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Conserved domains on  [gi|2790487081|ref|WP_371181996|]
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cystine ABC transporter permease [Enterobacter sp. KBR-315C3_2022]

Protein Classification

cystine ABC transporter permease( domain architecture ID 11487640)

cystine ABC transporter permease similar to Escherichia coli L-cystine transport system permease protein YecS which is part of the ABC transporter complex FliY-YecC-YecS involved in L-cystine transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 2.63e-146

cystine ABC transporter permease;


:

Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 406.44  E-value: 2.63e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100    1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 FGIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100   81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQERD 220
Cdd:PRK15100  161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
 
Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 2.63e-146

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 406.44  E-value: 2.63e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100    1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 FGIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100   81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQERD 220
Cdd:PRK15100  161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-216 6.63e-99

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 286.20  E-value: 6.63e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 FGIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:COG0765    81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2790487081 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNR 216
Cdd:COG0765   161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 10-216 1.99e-47

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 155.39  E-value: 1.99e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  10 DSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFGIELDPIP 89
Cdd:TIGR03004   2 AYLPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  90 AAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVP 169
Cdd:TIGR03004  82 TGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLA 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2790487081 170 ELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNR 216
Cdd:TIGR03004 162 DLTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 22-204 4.32e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.96  E-value: 4.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  22 TLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFG---IELDPIPAAMIGLSLN 98
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  99 TAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLI 178
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                         170       180
                  ....*....|....*....|....*.
gi 2790487081 179 TSRTLEVFTMYLAASLIYWVMATVLS 204
Cdd:cd06261   164 LLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-211 5.43e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 78.11  E-value: 5.43e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  33 GLVLGFVLALMRMsqvWPVRWLARFYISVFRGTPLIAQLFMIYYgLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAIS 112
Cdd:pfam00528   1 GIPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 113 SIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATI----QVPELFRQAQLItSRTLEVFTM 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILG-YDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 2790487081 189 YLAASLIYWVMATVLSALQNYFE 211
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
 
Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 2.63e-146

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 406.44  E-value: 2.63e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100    1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 FGIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100   81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQERD 220
Cdd:PRK15100  161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-216 6.63e-99

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 286.20  E-value: 6.63e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:COG0765     1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 FGIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:COG0765    81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2790487081 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNR 216
Cdd:COG0765   161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 4-219 3.34e-77

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 231.52  E-value: 3.34e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   4 SIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFG- 82
Cdd:COG4160     2 DLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEw 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  83 --------IELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFI 154
Cdd:COG4160    82 vreswlwpLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVI 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2790487081 155 SLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQER 219
Cdd:COG4160   162 LMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLR 226
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
15-219 3.66e-63

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 196.11  E-value: 3.66e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  15 LLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ------------FG 82
Cdd:COG4215    18 LLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQIllnaladlfgydGF 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  83 IELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSL 162
Cdd:COG4215    98 IEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTAL 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2790487081 163 AATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQER 219
Cdd:COG4215   178 VSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERRASRGVR 234
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 10-216 1.99e-47

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 155.39  E-value: 1.99e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  10 DSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFGIELDPIP 89
Cdd:TIGR03004   2 AYLPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  90 AAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVP 169
Cdd:TIGR03004  82 TGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLA 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2790487081 170 ELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNR 216
Cdd:TIGR03004 162 DLTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 1-214 7.26e-43

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 144.04  E-value: 7.26e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   1 MQESIQLVIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK09494    1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  81 F--GIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVK 158
Cdd:PRK09494   81 AfnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2790487081 159 DTSLAATIQVPELFRQAQLITS---RTLEVFTmylAASLIYWVMATVLSALQNYFENQL 214
Cdd:PRK09494  161 DTSLFIVIGVAELTRQGQEIIAgnfRALEIWS---AVAVIYLIITLVLSFILRRLERRM 216
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 8-214 9.42e-43

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 143.45  E-value: 9.42e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   8 VIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFGIELDP 87
Cdd:TIGR03003   6 VRQILPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  88 IPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQ 167
Cdd:TIGR03003  86 LVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAIT 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2790487081 168 VPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQL 214
Cdd:TIGR03003 166 VLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
9-222 7.39e-42

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 141.74  E-value: 7.39e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   9 IDSLPyLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQF------- 81
Cdd:PRK11123    2 NEFFP-LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsdg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  82 -----------------GIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARV 144
Cdd:PRK11123   81 ftlnlgfvqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2790487081 145 ALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQERDPK 222
Cdd:PRK11123  161 ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRATRFERRPS 238
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
8-211 1.13e-38

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 133.42  E-value: 1.13e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   8 VIDSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQF---GIE 84
Cdd:PRK15107    9 IVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFlqnVLG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  85 LDP-----IPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKD 159
Cdd:PRK15107   89 LSPktdirLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQD 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2790487081 160 TSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFE 211
Cdd:PRK15107  169 TSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLK 220
artM PRK11122
arginine ABC transporter permease ArtM;
10-219 2.69e-38

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 132.00  E-value: 2.69e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  10 DSLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQF-------- 81
Cdd:PRK11122    3 EYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFpwlqeypw 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  82 --GIELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLrRAILPQAARVALPPLSNSFISLVKD 159
Cdd:PRK11122   83 lwHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKS 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 160 TSLAATIQVPELFRQAQLITSRTLEVfTMYLAASLIYWVMATVLSALQNYFENQLNRQER 219
Cdd:PRK11122  162 TSLAYTITLMDVMGYSQLLYGRTYDV-MVFGAAGIIYLVVNGLLTLLMRLIERKALAFER 220
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 11-109 4.35e-35

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 119.94  E-value: 4.35e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  11 SLPYLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFGIELDPIPA 90
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTA 80

                          90
                  ....*....|....*....
gi 2790487081  91 AMIGLSLNTAAYTSETLRA 109
Cdd:TIGR01726  81 AVIALTLFYGAYLAEIFRG 99
PRK15069 PRK15069
histidine ABC transporter permease HisM;
14-206 7.71e-34

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 120.93  E-value: 7.71e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  14 YLLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLpqFGIEL-------- 85
Cdd:PRK15069   18 YRFTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGM--YSLEIvrgtdlld 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  86 ----DPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTS 161
Cdd:PRK15069   96 affrSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATT 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2790487081 162 LAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSAL 206
Cdd:PRK15069  176 LAFTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISL 220
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 22-219 9.95e-30

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 113.70  E-value: 9.95e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  22 TLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGL----------------------- 78
Cdd:COG4597    95 TLLVAVLGIVLATILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVlealpsprqslslfdgvflnnrg 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  79 -----PQFGIELDPIPAAMI------------------------------------------------------------ 93
Cdd:COG4597   175 lylpaPVFEPGFGWVLAALLaaivaafvlrrwarrrqeatgqrfpvwwislallvglpllaflllgaplsldypelkgfn 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  94 ----------------GLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLV 157
Cdd:COG4597   255 frggltlspefvalllALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLT 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 158 KDTSLAATIQVPELFR-QAQLI---TSRTLEVFTM----YLAASLIywvmatvLSALQNYFENQLNRQER 219
Cdd:COG4597   335 KNSSLAVAIGYPDLVSvFAGTTlnqTGQAIEIIAItmavYLTISLL-------ISLLMNWYNRRVALVER 397
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 22-204 4.32e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.96  E-value: 4.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  22 TLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQFG---IELDPIPAAMIGLSLN 98
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  99 TAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLI 178
Cdd:cd06261    84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                         170       180
                  ....*....|....*....|....*.
gi 2790487081 179 TSRTLEVFTMYLAASLIYWVMATVLS 204
Cdd:cd06261   164 LLIFAILFPGDLGVAAAVALILLLLS 189
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
15-202 4.28e-24

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 95.63  E-value: 4.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  15 LLKGAVFTLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTPLIAQLFMIYYGLPQF-----------GI 83
Cdd:PRK15135    9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIAlnsvtealgvgQI 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  84 ELDPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLA 163
Cdd:PRK15135   89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2790487081 164 ATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATV 202
Cdd:PRK15135  169 SLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTV 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-211 5.43e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 78.11  E-value: 5.43e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  33 GLVLGFVLALMRMsqvWPVRWLARFYISVFRGTPLIAQLFMIYYgLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAIS 112
Cdd:pfam00528   1 GIPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081 113 SIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATI----QVPELFRQAQLItSRTLEVFTM 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILG-YDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 2790487081 189 YLAASLIYWVMATVLSALQNYFE 211
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 12-142 1.05e-14

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 70.49  E-value: 1.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  12 LPYLLKGAVFTLQLSIGGMFFGLVLGFVLALM---RMSQVWPVRWLARFYISVFRGTP--LIAQLFMIYYGLPQFgield 86
Cdd:COG3639    46 LPDLLSALLETLAIALLGTLLGAVLALPLAFLaarNLAPNPWVRLLARRLLNVLRAIPelVWALIFVAAVGLGPF----- 120

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2790487081  87 pipAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAA 142
Cdd:COG3639   121 ---AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVL 173
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-143 1.11e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 60.56  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLA-LMRMSQVWPVRWLARF---------------YISVFRGTPLIAQLFMIYY 76
Cdd:COG1178    50 PYLWRALGNTLLLALLVTLLSLLLGVPLAwLLARTDFPGRRLLRWLlllplalppyvvalaWIALFGPNGLLNTLLRALF 129

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2790487081  77 GLPQFGIEldPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAAR 143
Cdd:COG1178   130 GLEPPDIY--GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRP 194
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 4-166 3.99e-09

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 54.68  E-value: 3.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081   4 SIQLVIDSLPYLLKGAVFTLQLSIGGMFF----GLVLGFVLALMRMSQVWPVRWLAR---FYISVFRGTPLIAQLFMIyy 76
Cdd:COG2011     1 MLTMWSELWPLLLQATGETLYMVGVSTLIavllGLPLGVLLVLTRPGGLLPNPVLYRvlgVIVNIFRSIPFIILLVAL-- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  77 gLP--------QFGIEldpipAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQaarvALPP 148
Cdd:COG2011    79 -IPltrlivgtSIGTT-----AAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPE----ALPS 148

                         170       180
                  ....*....|....*....|..
gi 2790487081 149 LSNS----FISLVKDTSLAATI 166
Cdd:COG2011   149 LILGltvtLISLIGYSAMAGAV 170
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 13-142 1.44e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.53  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLALMrMSQVWPVRWLARFYISVFRGTPLIA--QLFMIYYGLPqfgieldpIPA 90
Cdd:COG0600    57 GELWEHLLASLLRVLLGFALAALLGVPLGLL-LGLSRLLRRLLDPLLVFLRPIPPLAlaPLLILWFGIG--------EAS 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2790487081  91 AMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAA 142
Cdd:COG0600   128 KIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAAL 179
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 23-166 3.89e-05

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 43.12  E-value: 3.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  23 LQLSIGGMFFGLVLGFVLALMrmsqVWPVRWLARFYI---SVFRGTPLIAQLFMIyygLPQFGIelDPIPAaMIGLSL-- 97
Cdd:COG1174    24 LLLVLLALLIALLIAVPLGIL----ITRRRRLAGLVLgvaNILQTIPSLALLALL---IPLLGI--GPAPA-IIALVLya 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2790487081  98 ------NTAAytsetlraAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATI 166
Cdd:COG1174    94 llpilrNTYT--------GLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALI 160
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-164 4.90e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 4.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLAlmrmsqvwpvrWLARFYISvfRGTPLIAQLFMIYYGLP---------QFGI 83
Cdd:COG1178   334 PSLLRALLNSLLLALLAALLAVLLALLLA-----------YLVRRRRG--RLARLLDRLAMLPYAVPgivlglgllLLFN 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  84 ELDPIP--AAMIGLSLNTA----AYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLV 157
Cdd:COG1178   401 RPLPLLlyGTLAILVLAYVvrflPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSM 480


                  ....*..
gi 2790487081 158 KDTSLAA 164
Cdd:COG1178   481 KELSATL 487
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-157 6.02e-05

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 42.41  E-value: 6.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  15 LLKGAVFTLQLSIGGMFFGLVLGF----VLALMRMSQVWPVRWLARF---YISVFRGTPLIAQL-FMIYYGLPQFGIELD 86
Cdd:PRK10782    9 LVRGVWETLAMTFVSGFFGFVIGLpvgvLLYVTRPGQIIANAKLYRTlsaLVNIFRSIPFIILLvWMIPFTRVIVGTSIG 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2790487081  87 pIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQaarvALPPLSNS----FISLV 157
Cdd:PRK10782   89 -LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPE----ALPGLVNAatitLITLV 158
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 22-141 9.75e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 42.30  E-value: 9.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  22 TLQLSIGGMFFGLVLGFVLALMRMSQVWPVRWLARFYISVFRGTP--LIAQLFMIYYG---------LPQFGIELDPIP- 89
Cdd:PRK15050   78 TLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPsfLITLAFTFLYGsagsvnialQRLFGLEAPPLDf 157

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2790487081  90 -AAMIGLSL-NTAAYTSETLR---AAISSIDKGQWEAAASIGMTPWQTLRRAILPQA 141
Cdd:PRK15050  158 lYSPGGVILaEITFYTPFVVRpllAAFAQLDARQLEAAASLGASPWRVARRVILPEA 214
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 13-141 1.53e-04

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 41.67  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLA--LMRMSQVWPVRWLA------------RFY--ISVFRGTPLIAQLFMiyy 76
Cdd:COG1176    63 PLYLKVLLRTLWIALLTTLICLLLGYPIAyfLARAPPRWRNLLLLlvilpfwtsflvRTYawIVLLGRNGLLNSLLL--- 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2790487081  77 glpQFGIELDPIP------AAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQA 141
Cdd:COG1176   140 ---ALGLIDEPLRllytefAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLS 207
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 106-143 1.71e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 41.66  E-value: 1.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2790487081 106 TLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAAR 143
Cdd:COG0555   154 TVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 13-142 2.77e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 40.87  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLALmrmsqvwpvrWLARFYisvFRGTPLIAQLFMIYYGLP------------- 79
Cdd:COG1177    57 PRLLDALLNSLLIALLSTLLATVLGTPAAL----------ALARYR---FRGRRLLLALLLLPLVVPgivlgvallllfs 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2790487081  80 QFGIELdPIPAAMIGLSLNTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAA 142
Cdd:COG1177   124 ALGLSG-GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIA 185
cysT CHL00187
sulfate transport protein; Provisional
 88-139 3.26e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 40.38  E-value: 3.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2790487081  88 IPAAMIGLSLntaAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILP 139
Cdd:CHL00187  140 VLLAMIFVSF---PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFP 188
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
13-210 1.83e-03

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 38.58  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  13 PYLLKGAVFTLQLSIGGMFFGLVLGFVLALMrMSQVWPVRWLAR--FYISVFRGTPLIAQLFMIYYGlPQFGI------- 83
Cdd:COG1175    72 PRFWNALGNTLLFTVVSVPLQLVLGLLLALL-LNRKLRGRGFFRtlFFLPWVISPVVVALIWKWLFN-PDYGLlnallga 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2790487081  84 -ELDPIP------AAMIGLSL----NTAAYTSETLRAAISSIDKGQWEAAASIGMTPWQTLRRAILPQAARValpplsnS 152
Cdd:COG1175   150 lGLEPINwlgdpsLALPAVIIvtvwKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPT-------I 222

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2790487081 153 FISLVkdTSLAATIQVpelFRQAQLITS----RTLEVFTMYL--------------AASLIYWVMATVLSALQNYF 210
Cdd:COG1175   223 LFVLV--LSTIGALQV---FDLVYVLTGggpgNSTTTLVLYIyqtafqqfdfgyasAIAVVLFLIILVLTLLQLRL 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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