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Conserved domains on  [gi|2791395033|ref|WP_371413206|]
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hypothetical protein [Synechococcus sp. WH 8101]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_5 super family cl46762
CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins ...
 26-65 2.43e-06

CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.


The actual alignment was detected with superfamily member pfam07878:

Pssm-ID: 481102  Cd Length: 43  Bit Score: 40.37  E-value: 2.43e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2791395033 26 SQRITITLPFAIAHGLMQRSIHEGRSLSNLAAFLLEASLQ 65
Cdd:pfam07878  1 SKRVNVTLPEDLLERLEQWADEEGRTVSNLAAFLIEKAVR 40
 
Name Accession Description Interval E-value
RHH_5 pfam07878
CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins ...
 26-65 2.43e-06

CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.


Pssm-ID: 429709  Cd Length: 43  Bit Score: 40.37  E-value: 2.43e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2791395033 26 SQRITITLPFAIAHGLMQRSIHEGRSLSNLAAFLLEASLQ 65
Cdd:pfam07878  1 SKRVNVTLPEDLLERLEQWADEEGRTVSNLAAFLIEKAVR 40
 
Name Accession Description Interval E-value
RHH_5 pfam07878
CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins ...
 26-65 2.43e-06

CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5; This family contains bacterial proteins that form a ribbon-helix-helix fold. This fold occurs in many examples of bacterial antitoxins.


Pssm-ID: 429709  Cd Length: 43  Bit Score: 40.37  E-value: 2.43e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 2791395033 26 SQRITITLPFAIAHGLMQRSIHEGRSLSNLAAFLLEASLQ 65
Cdd:pfam07878  1 SKRVNVTLPEDLLERLEQWADEEGRTVSNLAAFLIEKAVR 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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