|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
11-523 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 940.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 11 PAPSSLPGSKSVFIKWGLLGSVGLINGYATILMYSRGELAFALLTVILTALALYIFGSKKTYAHRYIYPGIAGMILFILF 90
Cdd:PRK10999 5 DVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVLF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 91 PLAYTVGLAFTNYSAKNQLSLERTQTVLLDRSFQSGESYPFTLYKTDDGHQIVVKDGD--QLLATDVFSLDNMTETEMDL 168
Cdd:PRK10999 85 PLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGEtgKNYLSEPFSLEAGGEQKLQL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 169 SVIESA-QGEKEKIKAIIQNRAAISGVDFNLPDGGDIRMSGLRKFASVAPLYTLQDDEETLINNETGEVLKPNMDVGFYQ 247
Cdd:PRK10999 165 KETDALpEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGTTLTNNQSGVKYRPNNDIGFYQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 248 PVDADGEFTGNTISPGFVVSIGTHNFERVWKDDGIKEPFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYR 327
Cdd:PRK10999 245 SINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYR 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 328 VLLILPYAVPAFISILIFKGLFNQSFGEINMVLENIFGLSPNWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDD 407
Cdd:PRK10999 325 VLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDD 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 408 LYEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGPNMIGTSEPAGYTDLLVSYTYRIAFEG 487
Cdd:PRK10999 405 LYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEG 484
|
490 500 510
....*....|....*....|....*....|....*.
gi 2793931330 488 GGGQDFGLASAIATLIFLLVGALALLNLRFTKLSQD 523
Cdd:PRK10999 485 GGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
109-269 |
2.34e-86 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 263.35 E-value: 2.34e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 109 LSLERTQTVLLDRSFQSGESYPFTLYKTDDGHQIVVKDGD--QLLATDVFSLDNMTETEMDLSVIESA-QGEKEKIKAII 185
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGEsgQLLVSEPFTLDGAGEQKLALEPAESLpTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 186 QNRAAISGVDFNLPDGGDIRMSGLRKFASVAPLYTLQDDEETLINNETGEVLKPNMDVGFYQPVDADGEFTGNTISPGFV 265
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGETLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 2793931330 266 VSIG 269
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
254-519 |
2.68e-56 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 190.35 E-value: 2.68e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 254 EFTGNTISPGFVvsiGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVqWEELKGRSIYRVLLILP 333
Cdd:COG1175 49 DWNLLGPPPEFV---GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 334 YAVPAFISILIFKGLFNQSFGEINMVLENIFGLSPNWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASA 413
Cdd:COG1175 121 WVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAAR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 414 IDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGpnmigtsePAGYTDLLVSYTYRIAFEgggGQDF 493
Cdd:COG1175 201 IDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDF 269
|
250 260
....*....|....*....|....*.
gi 2793931330 494 GLASAIATLIFLLVGALALLNLRFTK 519
Cdd:COG1175 270 GYASAIAVVLFLIILVLTLLQLRLLR 295
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
290-507 |
4.12e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 73.85 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 290 FIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPAFISILIFKGLFNQSFgeinmvlenifglspN 369
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL---------------G 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 370 WFSDPILAKTMVLMVNTWLgFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNN 449
Cdd:cd06261 66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2793931330 450 FVMIQLLTNGGPNMIGTSepagytdllvsytYRIAFEGGGGQDFGLASAIATLIFLLV 507
Cdd:cd06261 145 FALVSFLGGGEAPGPGTG-------------LLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
249-429 |
7.77e-03 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 38.89 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 249 VDADGEFtgntispgfvvsIGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRV 328
Cdd:TIGR03262 31 YDSDGDF------------IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 329 LLILPYAVPAFISILIFKGLF-NQsfgeinmvlenifGLSPNWFSD-PILAKTMVLMVNTWLGFPYMMILCMGLLKAIPD 406
Cdd:TIGR03262 95 VALLPLLAPSLLPAISLIYLFgNQ-------------GLLKGLLGGfSIYGFWGIVIGEVFYTFPHALMILVTALSLADG 161
|
170 180
....*....|....*....|...
gi 2793931330 407 DLYEASAIDGANFLDNFKRITFP 429
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLP 184
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
11-523 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 940.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 11 PAPSSLPGSKSVFIKWGLLGSVGLINGYATILMYSRGELAFALLTVILTALALYIFGSKKTYAHRYIYPGIAGMILFILF 90
Cdd:PRK10999 5 DVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVLF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 91 PLAYTVGLAFTNYSAKNQLSLERTQTVLLDRSFQSGESYPFTLYKTDDGHQIVVKDGD--QLLATDVFSLDNMTETEMDL 168
Cdd:PRK10999 85 PLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGEtgKNYLSEPFSLEAGGEQKLQL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 169 SVIESA-QGEKEKIKAIIQNRAAISGVDFNLPDGGDIRMSGLRKFASVAPLYTLQDDEETLINNETGEVLKPNMDVGFYQ 247
Cdd:PRK10999 165 KETDALpEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGTTLTNNQSGVKYRPNNDIGFYQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 248 PVDADGEFTGNTISPGFVVSIGTHNFERVWKDDGIKEPFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYR 327
Cdd:PRK10999 245 SINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVYR 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 328 VLLILPYAVPAFISILIFKGLFNQSFGEINMVLENIFGLSPNWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDD 407
Cdd:PRK10999 325 VLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDD 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 408 LYEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGPNMIGTSEPAGYTDLLVSYTYRIAFEG 487
Cdd:PRK10999 405 LYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFEG 484
|
490 500 510
....*....|....*....|....*....|....*.
gi 2793931330 488 GGGQDFGLASAIATLIFLLVGALALLNLRFTKLSQD 523
Cdd:PRK10999 485 GGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
109-269 |
2.34e-86 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 263.35 E-value: 2.34e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 109 LSLERTQTVLLDRSFQSGESYPFTLYKTDDGHQIVVKDGD--QLLATDVFSLDNMTETEMDLSVIESA-QGEKEKIKAII 185
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGEsgQLLVSEPFTLDGAGEQKLALEPAESLpTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 186 QNRAAISGVDFNLPDGGDIRMSGLRKFASVAPLYTLQDDEETLINNETGEVLKPNMDVGFYQPVDADGEFTGNTISPGFV 265
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGETLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 2793931330 266 VSIG 269
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
254-519 |
2.68e-56 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 190.35 E-value: 2.68e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 254 EFTGNTISPGFVvsiGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVqWEELKGRSIYRVLLILP 333
Cdd:COG1175 49 DWNLLGPPPEFV---GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 334 YAVPAFISILIFKGLFNQSFGEINMVLENIFGLSPNWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASA 413
Cdd:COG1175 121 WVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAAR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 414 IDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGpnmigtsePAGYTDLLVSYTYRIAFEgggGQDF 493
Cdd:COG1175 201 IDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDF 269
|
250 260
....*....|....*....|....*.
gi 2793931330 494 GLASAIATLIFLLVGALALLNLRFTK 519
Cdd:COG1175 270 GYASAIAVVLFLIILVLTLLQLRLLR 295
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
266-519 |
9.38e-20 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 92.53 E-value: 9.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 266 VSIGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPAFISILIF 345
Cdd:COG1178 36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 346 KGLFNQSfGEINMVLENIFGLSPNwfsdPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKR 425
Cdd:COG1178 112 IALFGPN-GLLNTLLRALFGLEPP----DIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRR 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 426 ITFPLMIKPLTPLLIaafafnfnnFVMIQLLTN-GGPNMIGTsepaGYTDLlvsyTYRIAFEGGGGQDFGLASAIATLIF 504
Cdd:COG1178 187 VTLPLLRPAIAAGAL---------LVFLLCLADfGTPLVLGG----GYTTL----TTAIYQAWLGDFDLGAAAALALVLL 249
|
250
....*....|....*
gi 2793931330 505 LLVGALALLNLRFTK 519
Cdd:COG1178 250 LLVLLLLLLERRLRR 264
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
268-517 |
2.11e-17 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 82.57 E-value: 2.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 268 IGTHNFERVWKDDgikePFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEeLKGRSIYRVLLILPYAVPAFISILIFKG 347
Cdd:PRK10561 39 VGLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYV-VRGSRFYQTLMLLPYAVAPAVAAVLWIF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 348 LFNQSFGEINMVLeNIFGLSPNWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRIT 427
Cdd:PRK10561 114 LFNPGRGLITHFL-AEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 428 FPLmIKPLT--PLLIAAFAFNFNNFVMIQLLTNGGPNMIGTsepagytdllvSYTYRIAFEGGGGQDFGLASAIATLIFL 505
Cdd:PRK10561 193 LPL-IAPVSffLLVVNLVYAFFDTFPVIDAATSGGPVQATT-----------TLIYKIYREGFTGLDLSSSAAQSVVLMF 260
|
250
....*....|..
gi 2793931330 506 LVGALALLNLRF 517
Cdd:PRK10561 261 LVIVLTVVQFRY 272
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
255-522 |
9.56e-16 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 77.50 E-value: 9.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 255 FTGNTISPGFVVSIGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPY 334
Cdd:COG1176 38 FTTRDPYGGVVPGFTLENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 335 AVP------AFISILIFKGLFNQSFGEINmVLENIFGLSPNWFSdpilaktmVLMVNTWLGFPYMMILCMGLLKAIPDDL 408
Cdd:COG1176 114 WTSflvrtyAWIVLLGRNGLLNSLLLALG-LIDEPLRLLYTEFA--------VVIGLVYVYLPFMVLPLYAALEKIDPSL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 409 YEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGPNMIGTSepagytdllvsytyrIAFEGG 488
Cdd:COG1176 185 LEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNL---------------IYQQFL 249
|
250 260 270
....*....|....*....|....*....|....
gi 2793931330 489 GGQDFGLASAIATLIFLLVGALALLNLRFTKLSQ 522
Cdd:COG1176 250 SALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
290-507 |
4.12e-15 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 73.85 E-value: 4.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 290 FIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPAFISILIFKGLFNQSFgeinmvlenifglspN 369
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL---------------G 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 370 WFSDPILAKTMVLMVNTWLgFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNN 449
Cdd:cd06261 66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2793931330 450 FVMIQLLTNGGPNMIGTSepagytdllvsytYRIAFEGGGGQDFGLASAIATLIFLLV 507
Cdd:cd06261 145 FALVSFLGGGEAPGPGTG-------------LLLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
268-499 |
9.65e-15 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 75.13 E-value: 9.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 268 IGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLA---NIVQWEelKGRSIYRVLLILPYavpaFISIL- 343
Cdd:COG4209 70 VGLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlllNELRSK--RFKKTVQTISYLPH----FLSWVv 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 344 ---IFKGLFNQSFGEINMVLENiFGLSP-NWFSDPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANF 419
Cdd:COG4209 140 vagIVYQFLSPDTGLVNQLLRA-LGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGR 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 420 LDNFKRITFPlMIKPLtplliaafafnfnnfVMIQLLTNGGpNMIGT--------SEPAGY--TDLLVSYTYRIAFEGGg 489
Cdd:COG4209 219 WQQIWHITLP-GIRPT---------------IVILLILNIG-NILNVgfeqiyllYNPLNYstSDVIDTYVYRIGLQNG- 280
|
250
....*....|
gi 2793931330 490 gqDFGLASAI 499
Cdd:COG4209 281 --DYSYATAV 288
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
270-434 |
5.73e-12 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 65.90 E-value: 5.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 270 THNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPAFI---SILIFk 346
Cdd:COG1177 47 LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVlgvALLLL- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 347 glFNQsfgeinmvleniFGLSPNWFSdpilaktmVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRI 426
Cdd:COG1177 122 --FSA------------LGLSGGLWG--------LILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRV 179
|
....*...
gi 2793931330 427 TFPLmIKP 434
Cdd:COG1177 180 TLPL-IAP 186
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
259-519 |
1.89e-08 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 56.71 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 259 TISPGFVVSIGTHNFERVWKDDGIKEPFISifiwTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPA 338
Cdd:COG1178 313 SLTKALDDNLTLDNYRFVLLDPSLLRALLN----SLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPG 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 339 F---ISILIFkglFNQSFGeinmvlenifglspnwfsdPILAKTMVLMV--NTWLGFPYMMILCMGLLKAIPDDLYEASA 413
Cdd:COG1178 389 IvlgLGLLLL---FNRPLP-------------------LLLYGTLAILVlaYVVRFLPFALRSLEAALAQIDPSLEEAAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 414 IDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQLLTNGGpnmigtsepagyTDLLVSYTYRIAFEGgggqDF 493
Cdd:COG1178 447 SLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG------------FETLAVLIYQLASSG----RY 510
|
250 260
....*....|....*....|....*.
gi 2793931330 494 GLASAIATLIFLLVGALALLNLRFTK 519
Cdd:COG1178 511 GEAAALALLLVLVSLLPVLLLERLLG 536
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
272-431 |
6.61e-08 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 53.95 E-value: 6.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 272 NFERVWKDDgikePFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPaFISILIfkGLFnQ 351
Cdd:COG0395 62 NYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIP-GQVLLI--PLY-L 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 352 SFGEINMvLENIFGLspnwfsdpILAKTMVLMvntwlgfPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRITFPLM 431
Cdd:COG0395 134 LFRQLGL-LNTYWGL--------ILPYLAFGL-------PFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLS 197
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
305-519 |
3.65e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 50.38 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 305 LVIGLVLANIVQWeelKGRSIYRVLLILPYAVPAFISILIFkglfnqsfgeinmvlenifgLSPNWFSDPILAKTMVLMV 384
Cdd:pfam00528 2 IPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIIL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 385 NTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRITFPLMIKPLTPLLIAAFAFNFNNFVMIQlltnggpnMI 464
Cdd:pfam00528 59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLE--------FL 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2793931330 465 GTSEPAGYTDLLVSYTYRIAFEGGGGqdFGLASAIATLIFLLVGALALLNLRFTK 519
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPV--LAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
293-435 |
2.06e-03 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 40.12 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 293 TVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRVLLILPYAVPAFISILIFKGLFNQSfGEINMVLENiFGLspnwfs 372
Cdd:COG0555 59 SLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAP-LGI------ 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2793931330 373 DPILAKTMVLMVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFLDNFKRITFPLMIKPL 435
Cdd:COG0555 131 KVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPAL 193
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
249-429 |
7.77e-03 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 38.89 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 249 VDADGEFtgntispgfvvsIGTHNFERVWKDDGikepFISIFIWTVIFSVCTVAFTLVIGLVLANIVQWEELKGRSIYRV 328
Cdd:TIGR03262 31 YDSDGDF------------IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793931330 329 LLILPYAVPAFISILIFKGLF-NQsfgeinmvlenifGLSPNWFSD-PILAKTMVLMVNTWLGFPYMMILCMGLLKAIPD 406
Cdd:TIGR03262 95 VALLPLLAPSLLPAISLIYLFgNQ-------------GLLKGLLGGfSIYGFWGIVIGEVFYTFPHALMILVTALSLADG 161
|
170 180
....*....|....*....|...
gi 2793931330 407 DLYEASAIDGANFLDNFKRITFP 429
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLP 184
|
|
| TM_PBP2_N |
pfam16296 |
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of ... |
84-138 |
9.99e-03 |
|
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs, such as Binding-protein-dependent transport systems inner membrane component and Maltose transport permease MalF. It is around 580 residues in length and is mainly found in various species, such as Thermotoga, Dictyoglomus, Thermosipho, Fervidobacterium, Mesotoga and so on. The function of this family is unknown.
Pssm-ID: 435260 Cd Length: 79 Bit Score: 35.01 E-value: 9.99e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2793931330 84 MILFILFPLAYTVGLAFTNYSAKNQLSLERTQTVLLDRSFQ---SGESYPFTLYKTDD 138
Cdd:pfam16296 3 LLVFQVFPVLYTASTAFTNYGDGHRGTKEQAIAAIQASSVKrvpGSPEYALTVATKGS 60
|
|
| |
