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Conserved domains on  [gi|2793968406|ref|WP_372127771|]
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flagellin, partial [Vibrio sp. 10N.222.46.A3]

Protein Classification

flagellin( domain architecture ID 1001289)

flagellin polymerizes to form the filaments of bacterial flagella

CATH:  3.30.70.2120|1.20.1330.10
Gene Ontology:  GO:0009288|GO:0005576
PubMed:  34299141
SCOP:  4007637

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 super family cl35743
polar flagellin E;
1-170 1.20e-87

polar flagellin E;


The actual alignment was detected with superfamily member PRK08869:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 261.02  E-value: 1.20e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406   1 IEELATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKpedpktlegkqVTVDTIDVTSVGGA 80
Cdd:PRK08869  218 IEELATYINGQTDGVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNATA-----------VTVDDLDISTVGGA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  81 QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQ 160
Cdd:PRK08869  287 QQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQ 366

                         170
                  ....*....|
gi 2793968406 161 APNSALSLLG 170
Cdd:PRK08869  367 APQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-170 1.20e-87

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 261.02  E-value: 1.20e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406   1 IEELATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKpedpktlegkqVTVDTIDVTSVGGA 80
Cdd:PRK08869  218 IEELATYINGQTDGVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNATA-----------VTVDDLDISTVGGA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  81 QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQ 160
Cdd:PRK08869  287 QQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQ 366

                         170
                  ....*....|
gi 2793968406 161 APNSALSLLG 170
Cdd:PRK08869  367 APQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
64-170 1.04e-23

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 93.01  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  64 GKQVTVDTIDVTSVGGA---QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTN 140
Cdd:COG1344   138 GTATDTPPFQVDYQGDAgqrTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITR 217

                          90       100       110
                  ....*....|....*....|....*....|
gi 2793968406 141 MTKSQILSQASSSILAQAKQApnSALSLLG 170
Cdd:COG1344   218 LTKLQTLLQAALAALAQANQL--SLLDLLR 245
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 84-169 2.97e-23

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 87.77  E-value: 2.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  84 VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN 163
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 2793968406 164 SALSLL 169
Cdd:pfam00700  81 SLLNLL 86
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
28-169 2.93e-19

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 82.19  E-value: 2.93e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  28 FAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDTI----DVTSVGGAQESVAV-----IDAALKYVDSHR 98
Cdd:NF038071  132 FGGQKLLKDGGKFEAAVTFQIGGSSAEKLDVDASANVQKVNAEVVgtekDVTAGIGTQAKAASaaitkLDTLLGDIGAVR 211

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2793968406  99 SELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:NF038071  212 SQFGANINRLEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 81-169 1.48e-05

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 43.88  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  81 QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQ 160
Cdd:TIGR02550 220 SASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299


                  ....*....
gi 2793968406 161 apnsaLSLL 169
Cdd:TIGR02550 300 -----LSLF 303
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-170 1.20e-87

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 261.02  E-value: 1.20e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406   1 IEELATYINGQQDLVKASIDEEGKLQIFAGNNKVDGEIAFSGALSDELGMQAGAKpedpktlegkqVTVDTIDVTSVGGA 80
Cdd:PRK08869  218 IEELATYINGQTDGVGASVSEDGKLQLFAAGQKVSGGVSFSGGLAAELGLGNATA-----------VTVDDLDISTVGGA 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  81 QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQ 160
Cdd:PRK08869  287 QQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQ 366

                         170
                  ....*....|
gi 2793968406 161 APNSALSLLG 170
Cdd:PRK08869  367 APQSALSLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
40-169 2.11e-32

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 118.73  E-value: 2.11e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  40 FSGALSDELGMQAGAKPEDPKTLEGKQVTVDTIDVTSVGGA-QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNI 118
Cdd:PRK06819  245 YKGEVDATNGKVTFADDANGDPITDATKLEAAAQFSPAGKAtASPLETLDDALKQVDGLRSSLGAVQNRFESTVTNLNNT 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2793968406 119 NENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK06819  325 VTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
PRK12806 PRK12806
flagellin; Provisional
 67-170 1.59e-27

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 106.70  E-value: 1.59e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  67 VTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQI 146
Cdd:PRK12806  371 VGIDSLDVSTASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQI 450

                          90       100
                  ....*....|....*....|....
gi 2793968406 147 LSQASSSILAQAKQAPNSALSLLG 170
Cdd:PRK12806  451 LQQAGTAMLAQANSLPQSVLSLLG 474
PRK12802 PRK12802
flagellin; Provisional
 67-170 5.48e-27

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 102.65  E-value: 5.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  67 VTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQI 146
Cdd:PRK12802  179 LITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQT 258

                          90       100
                  ....*....|....*....|....
gi 2793968406 147 LSQASSSILAQAKQAPNSALSLLG 170
Cdd:PRK12802  259 LQQASTSVLAQANQLPSAVLKLLQ 282
PRK12804 PRK12804
flagellin; Provisional
 45-169 1.43e-25

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 99.30  E-value: 1.43e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  45 SDELGM-QAGAKPEDPKTLEGKQVT-VDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENV 122
Cdd:PRK12804  174 ADALGVkDTDGTLVTGKSVSDIDVTkFANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASGENL 253

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2793968406 123 NASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK12804  254 TAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLL 300
PRK08026 PRK08026
FliC/FljB family flagellin;
85-169 2.81e-24

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 97.89  E-value: 2.81e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  85 AVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNS 164
Cdd:PRK08026  443 AALDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQ 522


                  ....*
gi 2793968406 165 ALSLL 169
Cdd:PRK08026  523 VLSLL 527
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
64-170 1.04e-23

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 93.01  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  64 GKQVTVDTIDVTSVGGA---QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTN 140
Cdd:COG1344   138 GTATDTPPFQVDYQGDAgqrTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITR 217

                          90       100       110
                  ....*....|....*....|....*....|
gi 2793968406 141 MTKSQILSQASSSILAQAKQApnSALSLLG 170
Cdd:COG1344   218 LTKLQTLLQAALAALAQANQL--SLLDLLR 245
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 84-169 2.97e-23

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 87.77  E-value: 2.97e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  84 VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN 163
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 2793968406 164 SALSLL 169
Cdd:pfam00700  81 SLLNLL 86
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
28-169 2.93e-19

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 82.19  E-value: 2.93e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  28 FAGNNKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDTI----DVTSVGGAQESVAV-----IDAALKYVDSHR 98
Cdd:NF038071  132 FGGQKLLKDGGKFEAAVTFQIGGSSAEKLDVDASANVQKVNAEVVgtekDVTAGIGTQAKAASaaitkLDTLLGDIGAVR 211

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2793968406  99 SELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:NF038071  212 SQFGANINRLEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
PRK12803 PRK12803
flagellin; Provisional
 15-169 2.39e-16

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 74.85  E-value: 2.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  15 VKASIDEEGKLQIFAGN--NKVDGEIAFSGALSDELGMQAGAKPEDPKTLEGKQVTVDT-IDVTSVGGAQESVAVIDAAL 91
Cdd:PRK12803  177 VGANQDEAIAVNIYAANvaNLFSGEGAQQAAPVQEGAQQEGAQAAPAPAAAPAQGGVNSpVNVTTTVDANMSLAKIENAI 256

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2793968406  92 KYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK12803  257 RMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLL 334
PRK12807 PRK12807
flagellin; Provisional
 74-169 8.20e-16

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 72.93  E-value: 8.20e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  74 VTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSS 153
Cdd:PRK12807  191 ISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGIS 270

                          90
                  ....*....|....*.
gi 2793968406 154 ILAQAKQAPNSALSLL 169
Cdd:PRK12807  271 MLSQANQTPQMVSKLL 286
PRK12584 PRK12584
flagellin A; Reviewed
 74-169 5.04e-15

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 71.48  E-value: 5.04e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  74 VTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSS 153
Cdd:PRK12584  414 VTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSY 493

                          90
                  ....*....|....*.
gi 2793968406 154 ILAQAKQAPNSALSLL 169
Cdd:PRK12584  494 AMSQANTVQQNILRLL 509
PRK13588 PRK13588
flagellin B; Provisional
 74-169 5.91e-14

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 68.36  E-value: 5.91e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  74 VTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSS 153
Cdd:PRK13588  418 VTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSF 497

                          90
                  ....*....|....*.
gi 2793968406 154 ILAQAKQAPNSALSLL 169
Cdd:PRK13588  498 AMAQANAVQQNVLRLL 513
PRK12808 PRK12808
flagellin; Provisional
 16-169 7.26e-14

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 68.06  E-value: 7.26e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  16 KASIDEEGKLQIFAGNNKVDGEIAFSGAlSDELGmQAGAKPEDPKTLEGKQVTVDTIDVTSVGGAQESVAVIDAALKYVD 95
Cdd:PRK12808  324 VAKAYLEAKMAYEKDNNAIDGKSKLEAA-DDALE-KDAIKTDASKVLVPKLEAAKKATTNSKADSLDAVKAIDEALKTVA 401

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2793968406  96 SHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK12808  402 DNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 475
PRK08411 PRK08411
flagellin; Reviewed
 67-169 2.31e-13

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 66.94  E-value: 2.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  67 VTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQI 146
Cdd:PRK08411  469 VKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANI 548

                          90       100
                  ....*....|....*....|...
gi 2793968406 147 LSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK08411  549 LAQSGSYAMAQANAVQQNVLRLL 571
PRK13589 PRK13589
flagellin A;
67-169 4.70e-12

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 63.12  E-value: 4.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  67 VTVDTIDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQI 146
Cdd:PRK13589  473 VKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNI 552

                          90       100
                  ....*....|....*....|...
gi 2793968406 147 LSQASSSILAQAKQAPNSALSLL 169
Cdd:PRK13589  553 LAQSGSYAMSQANAVQQNVLKLL 575
PRK12805 PRK12805
FliC/FljB family flagellin;
72-169 2.03e-09

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 54.88  E-value: 2.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  72 IDVTSVGGAQESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQAS 151
Cdd:PRK12805  188 LSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTS 267

                          90
                  ....*....|....*...
gi 2793968406 152 SSILAQAKQAPNSALSLL 169
Cdd:PRK12805  268 ISMLSQANQTPQMLTQLI 285
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 81-169 1.48e-05

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 43.88  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  81 QESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQ 160
Cdd:TIGR02550 220 SASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299


                  ....*....
gi 2793968406 161 apnsaLSLL 169
Cdd:TIGR02550 300 -----LSLF 303
PRK06663 PRK06663
flagellar hook-associated protein 3;
73-156 4.60e-05

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 42.37  E-value: 4.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  73 DVTSVGGaqESVAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASS 152
Cdd:PRK06663  326 DQELIGG--RALGEIDEALDNLLTTLADLGAKENRLDRSYARISKEKLDMTEALSKNEDIDVTEAITNLNMLELAHQASL 403


                  ....
gi 2793968406 153 SILA 156
Cdd:PRK06663  404 GVSG 407
PRK12687 PRK12687
flagellin; Reviewed
 84-169 2.16e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 40.42  E-value: 2.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  84 VAVIDAALKYVDSHRSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAKQAPN 163
Cdd:PRK12687  225 IGIVDQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQ 304


                  ....*.
gi 2793968406 164 SALSLL 169
Cdd:PRK12687  305 SILSLF 310
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 87-160 4.07e-03

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 36.51  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2793968406  87 IDAALKYVDSH-------RSELGAFQNRFDHAINNLDNINENVNASKSRIKDTDFAKETTNMTKSQILSQASSSILAQAK 159
Cdd:PRK07701  210 VSNLLSDIDQHidnvlavRAELGARSNRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARII 289


                  .
gi 2793968406 160 Q 160
Cdd:PRK07701  290 Q 290
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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