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Conserved domains on  [gi|2794006547|ref|WP_372154282|]
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hypothetical protein, partial [Vibrio sp. 10N.261.51.A1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
conj_PilL super family cl14024
conjugative transfer region protein, TIGR03748 family; This model describes the conserved ...
 44-147 8.69e-18

conjugative transfer region protein, TIGR03748 family; This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions]


The actual alignment was detected with superfamily member TIGR03748:

Pssm-ID: 163460  Cd Length: 105  Bit Score: 78.46  E-value: 8.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794006547  44 VQTSRY-VIERSAGEQMTDILGVPIEARLPVMSKMSIKDGVEFLLSGSGVSLRTPTSYAETQLYAQPLPLGHTDMGHMSL 122
Cdd:TIGR03748   1 VRYGRYtLVETRPEAAQRDLLNQVIDITIPPSLVATVGDALRYLLRRSGYSLCPASALSEAALLTLPLPAAHRKLGPMTL 80

                          90       100
                  ....*....|....*....|....*
gi 2794006547 123 RQALQVIGGQAFSLEEDVVRRNVGF 147
Cdd:TIGR03748  81 RDALQVLAGPAWRLKVDDVTREVCF 105
 
Name Accession Description Interval E-value
conj_PilL TIGR03748
conjugative transfer region protein, TIGR03748 family; This model describes the conserved ...
 44-147 8.69e-18

conjugative transfer region protein, TIGR03748 family; This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163460  Cd Length: 105  Bit Score: 78.46  E-value: 8.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794006547  44 VQTSRY-VIERSAGEQMTDILGVPIEARLPVMSKMSIKDGVEFLLSGSGVSLRTPTSYAETQLYAQPLPLGHTDMGHMSL 122
Cdd:TIGR03748   1 VRYGRYtLVETRPEAAQRDLLNQVIDITIPPSLVATVGDALRYLLRRSGYSLCPASALSEAALLTLPLPAAHRKLGPMTL 80

                          90       100
                  ....*....|....*....|....*
gi 2794006547 123 RQALQVIGGQAFSLEEDVVRRNVGF 147
Cdd:TIGR03748  81 RDALQVLAGPAWRLKVDDVTREVCF 105
 
Name Accession Description Interval E-value
conj_PilL TIGR03748
conjugative transfer region protein, TIGR03748 family; This model describes the conserved ...
 44-147 8.69e-18

conjugative transfer region protein, TIGR03748 family; This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 163460  Cd Length: 105  Bit Score: 78.46  E-value: 8.69e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794006547  44 VQTSRY-VIERSAGEQMTDILGVPIEARLPVMSKMSIKDGVEFLLSGSGVSLRTPTSYAETQLYAQPLPLGHTDMGHMSL 122
Cdd:TIGR03748   1 VRYGRYtLVETRPEAAQRDLLNQVIDITIPPSLVATVGDALRYLLRRSGYSLCPASALSEAALLTLPLPAAHRKLGPMTL 80

                          90       100
                  ....*....|....*....|....*
gi 2794006547 123 RQALQVIGGQAFSLEEDVVRRNVGF 147
Cdd:TIGR03748  81 RDALQVLAGPAWRLKVDDVTREVCF 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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