|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
12-445 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 720.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 12 PDLLHVDRSAMGPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFKAIS 91
Cdd:COG2256 2 DDAAAEASAANAPLAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAEFVALS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 AVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVL 171
Cdd:COG2256 82 AVTSGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVFVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 172 EGVSPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEG-GEITPQTLLQVLADR 250
Cdd:COG2256 162 KPLSEEDLEQLLERALADDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLSAPPDGvIEITLELVEEALQRR 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 251 TRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERL 330
Cdd:COG2256 242 ALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQAVERL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 331 GSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHDAEGGIAlDQT 410
Cdd:COG2256 322 GMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPGGYV-GQQ 400
|
410 420 430
....*....|....*....|....*....|....*
gi 2794475719 411 GFPDAMGERVYYNPVPRGMEIKLKEKLDRLREARA 445
Cdd:COG2256 401 YLPDELKGRRYYEPTERGFERKIKERLEKLRKLRR 435
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
24-445 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 697.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPEVRQV 103
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 104 LAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEAL 183
Cdd:PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 184 QRALRDAERGLgaetIQVSEASLLEIASAADGDVRRALTLLEIAAELaageGGEITPQTLLQVLADRTRRFDKNGEQFYD 263
Cdd:PRK13342 161 KRALEDKERGL----VELDDEALDALARLANGDARRALNLLELAALG----VDSITLELLEEALQKRAARYDKDGDEHYD 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 264 QISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLV 343
Cdd:PRK13342 233 LISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAV 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 344 LYLASTAKSNAGYAAFNQAKADVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHDAEGGIAlDQTGFPDAMGERVYYN 423
Cdd:PRK13342 313 IYLALAPKSNAAYTAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPNGYV-GQQYLPDELKGKRYYE 391
|
410 420
....*....|....*....|..
gi 2794475719 424 PVPRGMEIKLKEKLDRLREARA 445
Cdd:PRK13342 392 PTERGFEKKIKERLEKLKDKNR 413
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
24-449 |
9.92e-134 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 402.13 E-value: 9.92e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPEVRQV 103
Cdd:PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 104 LAEAAQRFAG-GCRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEA 182
Cdd:PRK13341 97 VDRAKERLERhGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 183 LQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGEITPQTLLQVLADRTRR---FDKNGE 259
Cdd:PRK13341 177 LKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRavlYDKEGD 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 260 QFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAF 339
Cdd:PRK13341 257 AHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 340 AQLVLYLASTAKSNAGYAAFNQAKAdVRATGTQEVPLHLRNaPTKLMKTLGYGQDYQYDHdAEGGIALDQTGFPDAMGER 419
Cdd:PRK13341 337 AQAALYLATAPKSNSVLGFFDALKK-VREEQVQDVPNHLRD-ANRDGKAFGDGVGYRYPH-AFRDHWVAQQYLPEALQGE 413
|
410 420 430
....*....|....*....|....*....|
gi 2794475719 420 VYYNPVPRGMEIKLKEKLDRLREARaLARA 449
Cdd:PRK13341 414 VFWQPSRQGWEGERRERLARRRAAQ-LAAA 442
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
275-432 |
2.10e-84 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 256.12 E-value: 2.10e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 275 SNPDAALYWLTRMLDGGCDPAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNA 354
Cdd:pfam12002 2 SDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSNS 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2794475719 355 GYAAFNQAKADVRATGTQEVPLHLRNAPTKLMKTLGYGQDYQYDHDAEGGIAlDQTGFPDAMGERVYYNPVPRGMEIK 432
Cdd:pfam12002 82 AYLAIDAALADVREGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNGYV-KQQYLPDELKGRRYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
136-446 |
6.67e-71 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 226.82 E-value: 6.67e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 136 LPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAERgLGAETIQVSEASLLEIASAADG 215
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEV-LAKHKFKIDDGLYNAMHNYNEG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 216 DVRRALTLLEiAAELAAGEGGEITPQTLL--QVLADRTRRFDKNGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCD 293
Cdd:PRK14700 80 DCRKILNLLE-RMFLISTRGDEIYLNKELfdQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 294 PAYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRATGTQE 373
Cdd:PRK14700 159 PLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNID 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2794475719 374 VPLHLRNAPTklmktlgygQDYQYDHDAEGGIALDQTgFPDAMgERVYYNPVPRGMEIKLKEKLDRLREARAL 446
Cdd:PRK14700 239 VPQHLKNYKD---------SNYLYPHNYPNSYVIQQY-LPDNI-IQNFYQPTASGFEAKIKTKLDSINKIKKL 300
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
195-273 |
2.44e-26 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 101.39 E-value: 2.44e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 195 GAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG--EITPQTLLQVLADRTRRFDKNGEQFYDQISALHKSV 272
Cdd:pfam16193 1 GGLKIELDDEALEALAELADGDARRALNALELAVLSTPPDDGgiHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSI 80
|
.
gi 2794475719 273 R 273
Cdd:pfam16193 81 R 81
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
31-368 |
8.63e-24 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 101.81 E-value: 8.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 31 PRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLA----------------------------- 80
Cdd:COG2812 6 PQTFDDVVGQEHVVR---TLKNALASGRLaHAYLFTGPRGVGKTTLARILAkalncengptgepcgecescraiaagshp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 81 --HYADAEfkaisAVLSGLPEVRQVLAEAAQR-FAGGCRtVLFVDEVHRFNKAQQDAFL-------PHIergtiLFVGAT 150
Cdd:COG2812 83 dvIEIDAE-----ASNIGVDDIRELIEKVSYApVEGRYK-VYIIDEAHMLTTEAFNALLktleeppPHV-----VFILAT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 151 TEnpsfeLNSAL---LSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEia 227
Cdd:COG2812 152 TE-----PQKLLptiLSRCQRFDFRRLPPEEIAEHLAKIAE-------REGIEIEPEALALIARAADGSMRDALSLLD-- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 228 aelaageggeitpQTLLQVLADRTRRFDKngeqfydqisaLHKSVRSSNPDAALYWLTRMLDGGCDP----AYLARRLTR 303
Cdd:COG2812 218 -------------QAIAFGLLDRRELLLD-----------LLEALLAGDVAALLALAEELAKRGRDLkrflDDLLSLLRD 273
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 304 MAIEDIGladprAQSMALEAWDIYERLgspegeLAFAQLVlylaSTAKSNAGYAAFNQAKADVRA 368
Cdd:COG2812 274 LLLLKLG-----PDAELLVNEDERERL------QELARRL----SPERLLRAIQILLEARRELER 323
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
22-247 |
1.44e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 87.90 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 22 MGPLAERMRPRTLDEMVGQKRLlapDSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYADAEFK------------ 88
Cdd:PRK14962 1 MEALYRKYRPKTFSEVVGQDHV---KKLIINALKKNSIsHAYIFAGPRGTGKTTVARILAKSLNCENRkgvepcnecrac 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 89 -AI------------SAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTeN 153
Cdd:PRK14962 78 rSIdegtfmdvieldAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEppSHVVFVLATT-N 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 154 PSfELNSALLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAag 233
Cdd:PRK14962 157 LE-KVPPTIISRCQVIEFRNISDELIIKRLQEVAE-------AEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFS-- 226
|
250
....*....|....
gi 2794475719 234 eGGEITPQTLLQVL 247
Cdd:PRK14962 227 -EGKITLETVHEAL 239
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
62-171 |
9.74e-18 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 79.17 E-value: 9.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 62 MILWGPPGCGKTTLALLLAHYADAEFKAISA-------VLSGLPEVRQVLAEAaqRFAGGCrtVLFVDEVHRFNKAQ--- 131
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGselvskyVGESEKRLRELFEAA--KKLAPC--VIFIDEIDALAGSRgsg 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2794475719 132 --------QDAFLPHIERGT-----ILFVGATTEnpSFELNSALLSRCRVHVL 171
Cdd:pfam00004 77 gdsesrrvVNQLLTELDGFTssnskVIVIAATNR--PDKLDPALLGRFDRIIE 127
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
25-237 |
1.83e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 85.15 E-value: 1.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVH-SMILWGPPGCGKTTLALLLAHYADAE----------------- 86
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVV---KALQNALDEGRLHhAYLLTGTRGVGKTTIARILAKSLNCEnaqhgepcgvcqsctqi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 87 --------FKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTEnpSF 156
Cdd:PRK08691 83 dagryvdlLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD--PH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 157 ELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG 236
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHV-------LDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVA 233
|
.
gi 2794475719 237 E 237
Cdd:PRK08691 234 E 234
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
22-249 |
2.84e-17 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 82.73 E-value: 2.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 22 MGPL-AERMRPRTLDEMVGQKRLLApdsALRRAVESGRVHSMILWGPPGCGKTTLALLLAH-----YADAEFKAISA--- 92
Cdd:PRK12402 1 DAPLwTEKYRPALLEDILGQDEVVE---RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARelygdPWENNFTEFNVadf 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 93 ------------------------VLSGLPEVRQVLAEAA--QRFAGGCRTVLFvDEVHRFNKAQQDAFLPHIER--GTI 144
Cdd:PRK12402 78 fdqgkkylvedprfahflgtdkriRSSKIDNFKHVLKEYAsyRPLSADYKTILL-DNAEALREDAQQALRRIMEQysRTC 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 145 LFVGATTeNPSfELNSALLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLL 224
Cdd:PRK12402 157 RFIIATR-QPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE-------AEGVDYDDDGLELIAYYAGGDLRKAILTL 227
|
250 260
....*....|....*....|....*
gi 2794475719 225 EIAAElaagEGGEITPQTLLQVLAD 249
Cdd:PRK12402 228 QTAAL----AAGEITMEAAYEALGD 248
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
22-255 |
3.55e-17 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 83.43 E-value: 3.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 22 MGPLAERMRPRTLDEMVGQKRLLApdsALRRAVES---GRVH-SMILWGPPGCGKTTLALLLAHYADAEfkaisavlsgL 97
Cdd:PRK04195 1 MMPWVEKYRPKTLSDVVGNEKAKE---QLREWIESwlkGKPKkALLLYGPPGVGKTSLAHALANDYGWE----------V 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 98 PE-----------VRQVLAEAAQR--FAGGCRTVLFVDEVhrfnkaqqDAFLPHIERG---TILFVGATTENP------- 154
Cdd:PRK04195 68 IElnasdqrtadvIERVAGEAATSgsLFGARRKLILLDEV--------DGIHGNEDRGgarAILELIKKAKQPiiltand 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 155 --SFELNSaLLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEiaaelAA 232
Cdd:PRK04195 140 pyDPSLRE-LRNACLMIEFKRLSTRSIVPVLKRICR-------KEGIECDDEALKEIAERSGGDLRSAINDLQ-----AI 206
|
250 260
....*....|....*....|...
gi 2794475719 233 GEGGEITPQTLLQVLADRTRRFD 255
Cdd:PRK04195 207 AEGYGKLTLEDVKTLGRRDREES 229
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
25-281 |
8.51e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 79.74 E-value: 8.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAE----------------- 86
Cdd:PRK14957 6 LARKYRPQSFAEVAGQQHAL---NSLVHALETQKVHHAYLFtGTRGVGKTTLGRLLAKCLNCKtgvtaepcnkcencvai 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 87 --------FKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGATTEnpSF 156
Cdd:PRK14957 83 nnnsfidlIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPeyVKFILATTD--YH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 157 ELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGG 236
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKII-------LAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELK 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2794475719 237 EITPQTLLQVLadrtrrfdkNGEQFYDQISAlhksVRSSNPDAAL 281
Cdd:PRK14957 234 QAQIKQMLGII---------DSEEVYSIINA----IIDNDPKAIL 265
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
38-170 |
1.17e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.10 E-value: 1.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 38 VGQKRLLApdsALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYA---DAEFKAISA-------VLSGLPEVRQVLAEA 107
Cdd:cd00009 1 VGQEEAIE---ALREALELPPPKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNAsdlleglVVAELFGHFLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2794475719 108 AQRFAGGcRTVLFVDEVHRFNKAQQDAFLPHIE--------RGTILFVGATTENPSFELNSALLSRCRVHV 170
Cdd:cd00009 78 ELAEKAK-PGVLFIDEIDSLSRGAQNALLRVLEtlndlridRENVRVIGATNRPLLGDLDRALYDRLDIRI 147
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
49-324 |
2.94e-15 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 75.78 E-value: 2.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 49 ALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHY----ADAEFKAISAVLSGL------PEVRQVLAE----------- 106
Cdd:COG0470 7 QLLAAAESGRLpHALLLHGPPGIGKTTLALALARDllceNPEGGKACGQCHSRLmaagnhPDLLELNPEeksdqigidqi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 107 -AAQRFA------GGCRTVLfVDEVHRFNKAQQDAFLPHIE---RGTILFVgaTTENPSFELNSaLLSRCRVHVLEGVSP 176
Cdd:COG0470 87 rELGEFLsltpleGGRKVVI-IDEADAMNEAAANALLKTLEeppKNTPFIL--IANDPSRLLPT-IRSRCQVIRFRPPSE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 177 QDIVEALQRAlrdaerglgaetiQVSEASLLEIASAADGDVRRALTLLEIAAElaageggeitPQTLLQVLADRTRRfdk 256
Cdd:COG0470 163 EEALAWLREE-------------GVDEDALEAILRLAGGDPRAAINLLQALAG----------RKELLEDLAALLSR--- 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2794475719 257 ngeqfyDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLTRmAIEDIGLADPRAQS-----MALEAW 324
Cdd:COG0470 217 ------DRALELLDALLKAEALELLDWLLKWLLDNLPLEYAGEDLAR-AYEALSEADRRLGRyandrLLLEAL 282
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
24-367 |
3.74e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 77.56 E-value: 3.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKrllAPDSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAH--------------------- 81
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQE---IVVRILKNAVKLQRVsHAYIFAGPRGTGKTTIARILAKvlnclnpqegepcgkcencve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 82 -----YADA-EFKAISAvlSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER---GTIlFVGATTE 152
Cdd:PRK14953 82 idkgsFPDLiEIDAASN--RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEpppRTI-FILCTTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 153 npSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLEIAAELAA 232
Cdd:PRK14953 159 --YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE-------EKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 233 gegGEITPQTLLQVLA----DRTRRFDKN-GEQFYDQISALHKSVRSSNPDAALYWltRMLDggcdpaylarRLTRMAIE 307
Cdd:PRK14953 230 ---GKVTIKVVEEFLGivsqESVRKFLNLlLESDVDEAIKFLRTLEEKGYNLNKFW--KQLE----------EEIRNILL 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 308 DIGLADPraqSMALEAWDIYERLGSPEGELafaqlvLYLASTaksnagyaaFNQAKADVR 367
Cdd:PRK14953 295 NKSLKNP---EEVFQVEDFYRKLEKPLEAL------LYLEDV---------INKAFSEAR 336
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
25-274 |
9.51e-15 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 76.62 E-value: 9.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLlapDSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEF-------------KAI 90
Cdd:PRK14960 5 LARKYRPRNFNELVGQNHV---SRALSSALERGRLHHAYLFtGTRGVGKTTIARILAKCLNCETgvtstpcevcatcKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 91 ------------SAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGATTEnPSf 156
Cdd:PRK14960 82 negrfidlieidAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPehVKFLFATTD-PQ- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 157 ELNSALLSRCRVHVLEGVSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLEIAaeLAAGEGG 236
Cdd:PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEK-------EQIAADQDAIWQIAESAQGSLRDALSLTDQA--IAYGQGA 230
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2794475719 237 eITPQTLLQVLA--DRTrrfdkngeQFYDQISALHKSVRS 274
Cdd:PRK14960 231 -VHHQDVKEMLGliDRT--------IIYDLILAVHQNQRE 261
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
174-247 |
1.10e-14 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 68.81 E-value: 1.10e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 174 VSPQDIVEALQRALRDAERGlGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEGGE-ITPQTLLQVL 247
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERG-GDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAEEDGGIvITLEDLEEVL 74
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
25-302 |
4.48e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 74.04 E-value: 4.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLAH-------YADAE-------FKA 89
Cdd:PRK06305 7 SSRKYRPQTFSEILGQDAVVA---VLKNALRFNRAaHAYLFSGIRGTGKTTLARIFAKalncqnpTEDQEpcnqcasCKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 90 ISAVLS------------GLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENps 155
Cdd:PRK06305 84 ISSGTSldvleidgashrGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEppQHVKFFLATTEI-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 156 FELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAErglgaetIQVSEASLLEIASAADGDVRRALTLLEIAAELAAgeg 235
Cdd:PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-------IETSREALLPIARAAQGSLRDAESLYDYVVGLFP--- 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 236 GEITPQTLLQVLADRTRrfdkngeqfyDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLT 302
Cdd:PRK06305 232 KSLDPDSVAKALGLLSQ----------DSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLT 288
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
26-233 |
4.94e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 74.04 E-value: 4.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 26 AERMRPRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYADAE-------------FKAIS 91
Cdd:PRK06647 7 ATKRRPRDFNSLEGQDFVVE---TLKHSIESNKIaNAYIFSGPRGVGKTSSARAFARCLNCVngptpmpcgecssCKSID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 ------------AVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTEnpSFE 157
Cdd:PRK06647 84 ndnsldvieidgASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEppPYIVFIFATTE--VHK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 158 LNSALLSRCRVHVLEGVSPQDIVEALQRALrdAERGLGAEtiqvSEAsLLEIASAADGDVRRALTLLEIAAELAAG 233
Cdd:PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVC--LEDQIKYE----DEA-LKWIAYKSTGSVRDAYTLFDQVVSFSDS 230
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
22-246 |
9.33e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 72.95 E-value: 9.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 22 MGPLAERMRPRTLDEMVGQKRLLAPdsaLRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYAD---------AEFKAIS 91
Cdd:PRK14963 1 MSALYQRARPITFDEVVGQEHVKEV---LLAALRQGRLgHAYLFSGPRGVGKTTTARLIAMAVNcsgedpkpcGECESCL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 AVLSG------------------LPEVRQVLAEAAQRfagGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATT 151
Cdd:PRK14963 78 AVRRGahpdvleidaasnnsvedVRDLREKVLLAPLR---GGRKVYILDEAHMMSKSAFNALLKTLEEppEHVIFILATT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 152 EnPSfELNSALLSRCRVHVLEGVSPQDIVEALQRALrdAERGLGAEtiqvsEASLLEIASAADGDVRRALTLLEiaAELA 231
Cdd:PRK14963 155 E-PE-KMPPTILSRTQHFRFRRLTEEEIAGKLRRLL--EAEGREAE-----PEALQLVARLADGAMRDAESLLE--RLLA 223
|
250
....*....|....*
gi 2794475719 232 AGeggeiTPQTLLQV 246
Cdd:PRK14963 224 LG-----TPVTRKQV 233
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
25-378 |
1.13e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 72.92 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAH--------------------YA 83
Cdd:PRK14950 6 LYRKWRSQTFAELVGQEHVV---QTLRNAIAEGRVaHAYLFTGPRGVGKTSTARILAKavncttndpkgrpcgtcemcRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 84 DAEFKAI------SAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGATTEnpS 155
Cdd:PRK14950 83 IAEGSAVdviemdAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPphAIFILATTE--V 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 156 FELNSALLSRCRVHVLEGVSPQDIVEALqralrdaERGLGAETIQVSEASLLEIASAADGDVRRALTLLEiaaELAAGEG 235
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHL-------RKIAAAEGINLEPGALEAIARAATGSMRDAENLLQ---QLATTYG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 236 GEIT---PQTLLQVLADrtrrfdkngeqfyDQISALHKSVRSSNPDAALYWLTRMLDGGCDpaylARRLTRMAIEDIgla 312
Cdd:PRK14950 231 GEISlsqVQSLLGISGD-------------EEVKALAEALLAKDLKAALRTLNAVAADGAD----LRQFTRDLVEYL--- 290
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 313 dprAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRATGTQEVPLHL 378
Cdd:PRK14950 291 ---RQVMLLNSGADRSLLDLTADEKAALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLEL 353
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
26-225 |
1.17e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 72.21 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 26 AERMRPRTLDEMVGQKRLlapDSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAH------YADAE-------FKAIS 91
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHI---TNTLLNAIENNHLAQALLFcGPRGVGKTTCARILARkinqpgYDDPNedfsfniFELDA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 AVLSGLPEVRQVLAEAaqRFAG--GCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENpsFELNSALLSRCR 167
Cdd:PRK14970 85 ASNNSVDDIRNLIDQV--RIPPqtGKYKIYIIDEVHMLSSAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTILSRCQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2794475719 168 VHVLEGVSPQDIVEALQRAlrdAERglgaETIQVSEASLLEIASAADGDVRRALTLLE 225
Cdd:PRK14970 161 IFDFKRITIKDIKEHLAGI---AVK----EGIKFEDDALHIIAQKADGALRDALSIFD 211
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
3-250 |
1.78e-13 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 71.87 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 3 KAKRPDSITPDLLHVDRSAMGPLAERMRPRTLDEMVG--------QKRLLAPDSALRRAVESGRVHS--MILWGPPGCGK 72
Cdd:COG0464 125 SAEALALAAPLVTYEDIGGLEEELLELREAILDDLGGleevkeelRELVALPLKRPELREEYGLPPPrgLLLYGPPGTGK 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 73 TTLALLLAHYADAEFKAI--SAVLS---GLPE--VRQVLAEAAQRfaggCRTVLFVDEV-----------HRFNKAQQDA 134
Cdd:COG0464 205 TLLARALAGELGLPLIEVdlSDLVSkyvGETEknLREVFDKARGL----APCVLFIDEAdalagkrgevgDGVGRRVVNT 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 135 FLPHIE--RGTILFVGATteNPSFELNSALLSRCRVHV-LEGVSPQDIVEALQRALRDAERGlgaetiqvSEASLLEIAS 211
Cdd:COG0464 281 LLTEMEelRSDVVVIAAT--NRPDLLDPALLRRFDEIIfFPLPDAEERLEIFRIHLRKRPLD--------EDVDLEELAE 350
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2794475719 212 AADG----DVRralTLLEIAAELAAGEGGE-ITPQTLLQVLADR 250
Cdd:COG0464 351 ATEGlsgaDIR---NVVRRAALQALRLGREpVTTEDLLEALERE 391
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
24-225 |
6.04e-13 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 69.37 E-value: 6.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILWGPPGCGKTTLALLLAH------YADAEFKAISAVLSGL 97
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAV---SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHellgpnYKEAVLELNASDDRGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 98 PEVRQVLAEAAQR---FAGGCRTVLFVDEVHRFNKAQQDAFlphieRGTILFVGATTE-----NPSFELNSALLSRCRVH 169
Cdd:PLN03025 79 DVVRNKIKMFAQKkvtLPPGRHKIVILDEADSMTSGAQQAL-----RRTMEIYSNTTRfalacNTSSKIIEPIQSRCAIV 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 170 VLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLE 225
Cdd:PLN03025 154 RFSRLSDQEILGRLMKV-------VEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
24-247 |
6.25e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 70.66 E-value: 6.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLapdSALRRAVESGR-VHSMILWGPPGCGKTTLALLLAHYAD-----AEFKAI------- 90
Cdd:PRK06645 10 PFARKYRPSNFAELQGQEVLV---KVLSYTILNDRlAGGYLLTGIRGVGKTTSARIIAKAVNcsaliTENTTIktceqct 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 91 -----------------SAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATT 151
Cdd:PRK06645 87 ncisfnnhnhpdiieidAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEppPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 152 ENPsfELNSALLSRCRVHVLEGVSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLEIAAELA 231
Cdd:PRK06645 167 EVQ--KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ-------ENLKTDIEALRIIAYKSEGSARDAVSILDQAASMS 237
|
250
....*....|....*.
gi 2794475719 232 AGEGGEITPQTLLQVL 247
Cdd:PRK06645 238 AKSDNIISPQVINQML 253
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
25-235 |
7.41e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 70.55 E-value: 7.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEfKAISAVLSG------- 96
Cdd:PRK14969 6 LARKWRPKSFSELVGQEHVV---RALTNALEQQRLHHAYLFtGTRGVGKTTLARILAKSLNCE-TGVTATPCGvcsacle 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 97 --------LPEV-----------RQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTEnPS 155
Cdd:PRK14969 82 idsgrfvdLIEVdaasntqvdamRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD-PQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 156 fELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLEIAaeLAAGEG 235
Cdd:PRK14969 161 -KIPVTVLSRCLQFNLKQMPPPLIVSHLQHI-------LEQENIPFDATALQLLARAAAGSMRDALSLLDQA--IAYGGG 230
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
27-224 |
9.26e-13 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 68.86 E-value: 9.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 27 ERMRPRTLDEMVgqkrLLAPDSALRRA-VESGRVHSMILWGP-PGCGKTTLALLLAHYADAEFKAISAVLSGLPEVRQVL 104
Cdd:PHA02544 13 QKYRPSTIDECI----LPAADKETFKSiVKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 105 AEAAQ--RFAGGcRTVLFVDEVHRfnkaqqdAFLPHIERGTILFVGATTENPSF--------ELNSALLSRCRVHVLEGV 174
Cdd:PHA02544 89 TRFAStvSLTGG-GKVIIIDEFDR-------LGLADAQRHLRSFMEAYSKNCSFiitannknGIIEPLRSRCRVIDFGVP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2794475719 175 SPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASAADGDVRRALTLL 224
Cdd:PHA02544 161 TKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINEL 210
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
25-233 |
1.13e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 69.07 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVH-SMILWGPPGCGKTTLALLLAHYADAEFKAIS------------ 91
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIV---TAISNGLSLGRIHhAWLLSGTRGVGKTTIARLLAKSLNCQNGITSnpcrkciickei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 -------------AVLSGLPEVRQVL-----AEAAQRFaggcrTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGATT 151
Cdd:PRK14961 83 ekglcldlieidaASRTKVEEMREILdniyySPSKSRF-----KVYLIDEVHMLSRHSFNALLKTLEEPPqhIKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 152 ENPsfELNSALLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEIAAELA 231
Cdd:PRK14961 158 DVE--KIPKTILSRCLQFKLKIISEEKIFNFLKYILI-------KESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLG 228
|
..
gi 2794475719 232 AG 233
Cdd:PRK14961 229 KG 230
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
25-227 |
4.26e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 68.05 E-value: 4.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYADAE----------------- 86
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIG---ALQNALKSGKIgHAYIFFGPRGVGKTTIARILAKRLNCEnpignepcnectsclei 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 87 --------FKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTEnpSF 156
Cdd:PRK14956 85 tkgissdvLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEppAHIVFILATTE--FH 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2794475719 157 ELNSALLSRCRVHVLEGVSP---QDIVEALQRalrdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEIA 227
Cdd:PRK14956 163 KIPETILSRCQDFIFKKVPLsvlQDYSEKLCK----------IENVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
29-130 |
4.64e-12 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 63.67 E-value: 4.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 29 MRPRTLDEMVGQKRLLApdsALRRAVESGRV------HsMILWGPPGCGKTTLALLLAHYADAEFKAIS----------- 91
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKE---NLKIFIEAAKQrgealdH-VLLYGPPGLGKTTLANIIANEMGVNIRITSgpaierpgdla 76
|
90 100 110
....*....|....*....|....*....|....*....
gi 2794475719 92 AVLSGLPEvrqvlaeaaqrfaggcRTVLFVDEVHRFNKA 130
Cdd:pfam05496 77 AILTNLEP----------------GDVLFIDEIHRLNRA 99
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
26-247 |
4.90e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 67.88 E-value: 4.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 26 AERMRPRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLA------------------------ 80
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTT---TLKNAIATNKLaHAYLFCGPRGVGKTTCARIFAktincqnltadgeacnecescvaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 81 --------HYADAefkaisAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGAT 150
Cdd:PRK14971 85 neqrsyniHELDA------ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEppSYAIFILAT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 151 TEN----PSfelnsaLLSRCRVHVLEGVSPQDIVEALQRAlrDAERGLGAETiqvsEAsLLEIASAADGDVRRALTLLEI 226
Cdd:PRK14971 159 TEKhkilPT------ILSRCQIFDFNRIQVADIVNHLQYV--ASKEGITAEP----EA-LNVIAQKADGGMRDALSIFDQ 225
|
250 260
....*....|....*....|.
gi 2794475719 227 AAELAageGGEITPQTLLQVL 247
Cdd:PRK14971 226 VVSFT---GGNITYKSVIENL 243
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
25-237 |
5.10e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 67.98 E-value: 5.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAH-----YADAEFKAIS------- 91
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVV---RALTHALEQQRLHHAYLFtGTRGVGKTTLSRILAKslnctGADGEGGITAqpcgqcr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 ------------------AVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATT 151
Cdd:PRK12323 83 acteidagrfvdyiemdaASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEppEHVKFILATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 152 EnPSfELNSALLSRCRVHVLEGVSPQDIVEALQRALrdaerglGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELA 231
Cdd:PRK12323 163 D-PQ-KIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL-------GEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYS 233
|
....*.
gi 2794475719 232 AGEGGE 237
Cdd:PRK12323 234 AGNVSE 239
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
26-248 |
6.43e-12 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 66.43 E-value: 6.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 26 AERMRPRTLDEMVGQKRLLApdsALRRAVESGRVHSMILWGPPGCGKTTLALLLAH--YADA------EFKAISAvlSGL 97
Cdd:PRK00440 8 VEKYRPRTLDEIVGQEEIVE---RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARelYGEDwrenflELNASDE--RGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 98 PEVRQVLAEAAQ-RFAGGCR-TVLFVDEVHRFNKAQQDAFLPHIERgtilfvgaTTENPSFELnSA---------LLSRC 166
Cdd:PRK00440 83 DVIRNKIKEFARtAPVGGAPfKIIFLDEADNLTSDAQQALRRTMEM--------YSQNTRFIL-SCnysskiidpIQSRC 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 167 RVHVLEGVSPQDIVEALQRAlrdAErglgAETIQVSEASLLEIASAADGDVRRALTLLEIAAELaageGGEITPQTLLQV 246
Cdd:PRK00440 154 AVFRFSPLKKEAVAERLRYI---AE----NEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT----GKEVTEEAVYKI 222
|
..
gi 2794475719 247 LA 248
Cdd:PRK00440 223 TG 224
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
25-244 |
8.19e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 67.43 E-value: 8.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLA----------------------- 80
Cdd:PRK14951 6 LARKYRPRSFSEMVGQEHVV---QALTNALTQQRLHHAYLFtGTRGVGKTTVSRILAkslncqgpdgqggitatpcgvcq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 81 --------HYAD-AEFKAISAvlSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGA 149
Cdd:PRK14951 83 acrdidsgRFVDyTELDAASN--RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPeyLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 150 TTEnPSfELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAE 229
Cdd:PRK14951 161 TTD-PQ-KVPVTVLSRCLQFNLRPMAPETVLEHLTQV-------LAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231
|
250
....*....|....*
gi 2794475719 230 LAAGEGGEITPQTLL 244
Cdd:PRK14951 232 FGSGQLQEAAVRQML 246
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
29-130 |
9.79e-12 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 65.92 E-value: 9.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 29 MRPRTLDEMVGQKRL-----LAPDSALRRavesGRV--HsMILWGPPGCGKTTLALLLAHYADAEFKAIS---------- 91
Cdd:PRK00080 19 LRPKSLDEFIGQEKVkenlkIFIEAAKKR----GEAldH-VLLYGPPGLGKTTLANIIANEMGVNIRITSgpalekpgdl 93
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2794475719 92 -AVLSGLPEvrqvlaeaaqrfaggcRTVLFVDEVHRFNKA 130
Cdd:PRK00080 94 aAILTNLEE----------------GDVLFIDEIHRLSPV 117
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
30-130 |
3.84e-11 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 63.95 E-value: 3.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 30 RPRTLDEMVGQKRL-----LAPDSALRRavesGRV--HsMILWGPPGCGKTTLALLLAHYADAEFKAIS----------- 91
Cdd:COG2255 23 RPKRLDEYIGQEKVkenlkIFIEAAKKR----GEAldH-VLLYGPPGLGKTTLAHIIANEMGVNIRITSgpaiekpgdla 97
|
90 100 110
....*....|....*....|....*....|....*....
gi 2794475719 92 AVLSGLPEvrqvlaeaaqrfaggcRTVLFVDEVHRFNKA 130
Cdd:COG2255 98 AILTNLEE----------------GDVLFIDEIHRLSRV 120
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
25-295 |
5.82e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 64.54 E-value: 5.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRV-HSMILWGPPGCGKTTLALLLA---HYADAEF------------- 87
Cdd:PRK09111 14 LARKYRPQTFDDLIGQEAMV---RTLTNAFETGRIaQAFMLTGVRGVGKTTTARILAralNYEGPDGdggptidlcgvge 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 88 --KAISA-----VL-------SGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFL-------PHIErgtilF 146
Cdd:PRK09111 91 hcQAIMEgrhvdVLemdaashTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLktleeppPHVK-----F 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 147 VGATTEnpsfeLNS---ALLSRCRVHVLEGVSPQDIVEALQRALrdaerglGAETIQVSEASLLEIASAADGDVRRALTL 223
Cdd:PRK09111 166 IFATTE-----IRKvpvTVLSRCQRFDLRRIEADVLAAHLSRIA-------AKEGVEVEDEALALIARAAEGSVRDGLSL 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2794475719 224 LEIAAELAAGEGGEITPQTLLQvLADRTRRFDkngeqfydqisaLHKSVRSSNPDAALYWLTRMLDGGCDPA 295
Cdd:PRK09111 234 LDQAIAHGAGEVTAEAVRDMLG-LADRARVID------------LFEALMRGDVAAALAEFRAQYDAGADPV 292
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
32-263 |
6.30e-11 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 63.09 E-value: 6.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 32 RTLDEMVGQKRLLapdSALRRAVESGRVHS-----MILWGPPGCGKTTLALLLAHYADAEFKAIS-----------AVLS 95
Cdd:TIGR00635 1 KLLAEFIGQEKVK---EQLQLFIEAAKMRQealdhLLLYGPPGLGKTTLAHIIANEMGVNLKITSgpalekpgdlaAILT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 96 GLPEvrqvlaeaaqrfaggcRTVLFVDEVHRFNKAQQDAFLPHIE--RGTIL------------------FVGATTEnpS 155
Cdd:TIGR00635 78 NLEE----------------GDVLFIDEIHRLSPAVEELLYPAMEdfRLDIVigkgpsarsvrldlppftLVGATTR--A 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 156 FELNSALLSRCR-VHVLEGVSPQDIVEALQRALRDAErglgaetIQVSEASLLEIASAADGDVRRALTLLEIAAELAA-G 233
Cdd:TIGR00635 140 GMLTSPLRDRFGiILRLEFYTVEELAEIVSRSAGLLN-------VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQvR 212
|
250 260 270
....*....|....*....|....*....|
gi 2794475719 234 EGGEITPQTLLQVLAdrTRRFDKNGEQFYD 263
Cdd:TIGR00635 213 GQKIINRDIALKALE--MLMIDELGLDEID 240
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
30-302 |
1.06e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 63.74 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 30 RPRTLDEMVGQK---RllapdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLA------HYADAE-------FKAISA 92
Cdd:PRK05563 11 RPQTFEDVVGQEhitK------TLKNAIKQGKIsHAYLFSGPRGTGKTSAAKIFAkavnclNPPDGEpcneceiCKAITN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 93 -----VL-------SGLPEVRQVLAEAaqRFA--GGCRTVLFVDEVHR-----FNkaqqdAFLPHIERGT--ILFVGATT 151
Cdd:PRK05563 85 gslmdVIeidaasnNGVDEIRDIRDKV--KYApsEAKYKVYIIDEVHMlstgaFN-----ALLKTLEEPPahVIFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 152 EnPSfELNSALLSRC------RVhvlegvSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLE 225
Cdd:PRK05563 158 E-PH-KIPATILSRCqrfdfkRI------SVEDIVERLKYILDK-------EGIEYEDEALRLIARAAEGGMRDALSILD 222
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 226 IAaelAAGEGGEITPQTLLQVLadrtrrfdknGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPAYLARRLT 302
Cdd:PRK05563 223 QA---ISFGDGKVTYEDALEVT----------GSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLI 286
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
25-225 |
1.81e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 62.84 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLlapDSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYADAE----------------- 86
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHV---SRTLQNAIDTGRVaHAFLFTGARGVGKTSTARILAKALNCEqgltaepcnvcppcvei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 87 --------FKAISAVLSGLPEVRQvLAEAAQRFAGGCRTVLF-VDEVHRFNKAQQDAFL-------PHIErgtilFVGAT 150
Cdd:PRK14965 83 tegrsvdvFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFiIDEVHMLSTNAFNALLktleeppPHVK-----FIFAT 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 151 TEnpSFELNSALLSRCRVHVLEGVSPQDIVEALqRALRDAERglgaetIQVSEASLLEIASAADGDVRRALTLLE 225
Cdd:PRK14965 157 TE--PHKVPITILSRCQRFDFRRIPLQKIVDRL-RYIADQEG------ISISDAALALVARKGDGSMRDSLSTLD 222
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
25-235 |
2.44e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 62.44 E-value: 2.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAE----------------- 86
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVV---RALSNALDQQYLHHAYLFtGTRGVGKTTISRILAKCLNCEkgvsanpcndcencrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 87 --------FKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENpsF 156
Cdd:PRK14958 83 degrfpdlFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTDH--H 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2794475719 157 ELNSALLSRCRVHVLEGVSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLEiaAELAAGEG 235
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE-------ENVEFENAALDLLARAANGSVRDALSLLD--QSIAYGNG 230
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
30-233 |
1.91e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 59.83 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 30 RPRTLDEMVGQKRLLApdsALRRAVESGRV-HSMILWGPPGCGKTTLALLLA------HYAD------------------ 84
Cdd:PRK07133 13 RPKTFDDIVGQDHIVQ---TLKNIIKSNKIsHAYLFSGPRGTGKTSVAKIFAnalncsHKTDllepcqecienvnnsldi 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 85 AEFKAISAvlSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENPSFELnsAL 162
Cdd:PRK07133 90 IEMDAASN--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEppKHVIFILATTEVHKIPL--TI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2794475719 163 LSRCRVHVLEGVSPQDIVEALQRALRDaerglgaETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAG 233
Cdd:PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEK-------ENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNN 229
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
34-261 |
3.30e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 57.20 E-value: 3.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 34 LDEMVGQKRLLapdSALRRAVESGRV------------HSMILWGPPGCGKTTLALLLAHYAD---AEFKAISAVLSGLP 98
Cdd:COG1223 1 LDDVVGQEEAK---KKLKLIIKELRRrenlrkfglwppRKILFYGPPGTGKTMLAEALAGELKlplLTVRLDSLIGSYLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 99 E----VRQVLAEAAQRfaggcRTVLFVDEVH-----RFNkaQQD---------AFLPHIE--RGTILFVGATteNPSFEL 158
Cdd:COG1223 78 EtarnLRKLFDFARRA-----PCVIFFDEFDaiakdRGD--QNDvgevkrvvnALLQELDglPSGSVVIAAT--NHPELL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 159 NSALLSRCRvHVLEGVSP--QDIVEALQRALRD--AERGLGAETIqvseASLLEIASAAdgDVRRAL-TLLEIAAElaag 233
Cdd:COG1223 149 DSALWRRFD-EVIEFPLPdkEERKEILELNLKKfpLPFELDLKKL----AKKLEGLSGA--DIEKVLkTALKKAIL---- 217
|
250 260
....*....|....*....|....*....
gi 2794475719 234 EGGE-ITPQTLLQVLADRTRRFDKNGEQF 261
Cdd:COG1223 218 EDREkVTKEDLEEALKQRKERKKEPKKEG 246
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
25-235 |
1.13e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 57.18 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEfKAISAVLSG------- 96
Cdd:PRK07994 6 LARKWRPQTFAEVVGQEHVL---TALANALDLGRLHHAYLFsGTRGVGKTTIARLLAKGLNCE-TGITATPCGecdncre 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 97 --------LPEV-----------RQVL-----AEAAQRFaggcrTVLFVDEVHRFNKAQQDAFL-------PHIErgtil 145
Cdd:PRK07994 82 ieqgrfvdLIEIdaasrtkvedtRELLdnvqyAPARGRF-----KVYLIDEVHMLSRHSFNALLktleeppEHVK----- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 146 FVGATTEnPSfELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLE 225
Cdd:PRK07994 152 FLLATTD-PQ-KLPVTILSRCLQFHLKALDVEQIRQQLEHI-------LQAEQIPFEPRALQLLARAADGSMRDALSLTD 222
|
250
....*....|
gi 2794475719 226 IAaeLAAGEG 235
Cdd:PRK07994 223 QA--IASGNG 230
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
60-171 |
3.77e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 3.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 60 HSMILWGPPGCGKTTLALLLAHYADAEFKAISAV------------------------LSGLPEVRQVLAEAAQRFAGgc 115
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileevldqllliivggkkasGSGELRLRLALALARKLKPD-- 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 116 rtVLFVDEVHRFNKAQQDAFL----------PHIERGTILFVGATT-ENPSFELNSALLSRCRVHVL 171
Cdd:smart00382 81 --VLILDEITSLLDAEQEALLllleelrlllLLKSEKNLTVILTTNdEKDLGPALLRRRFDRRIVLL 145
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
24-234 |
9.04e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 54.30 E-value: 9.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLApdsALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEFKAISAVLSGLPEVRQ 102
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETVKA---ILSRAAQENRVAPAYLFsGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 103 VLA-----------------EAAQRF--------AGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGATTENPS 155
Cdd:PRK14959 82 VTQgmhvdvveidgasnrgiDDAKRLkeaigyapMEGRYKVFIIDEAHMLTREAFNALLKTLEEppARVTFVLATTEPHK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2794475719 156 FELnsALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLeiAAELAAGE 234
Cdd:PRK14959 162 FPV--TIVSRCQHFTFTRLSEAGLEAHLTKV-------LGREGVDYDPAAVRLIARRAAGSVRDSMSLL--GQVLALGE 229
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
25-228 |
1.28e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 53.64 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLA----------------------- 80
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLV---RILRNAFTLNKIPQSILLvGASGVGKTTCARIISlclncsngptsdpcgtchncisi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 81 ---HYADA-EFKAISAvlSGLPEVRQVLAE-----AAQRFaggcrTVLFVDEVHRFNKAQQDAFLPHIER--GTILFVGA 149
Cdd:PRK14964 80 knsNHPDViEIDAASN--TSVDDIKVILENscylpISSKF-----KVYIIDEVHMLSNSAFNALLKTLEEpaPHVKFILA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2794475719 150 TTENPSFELNsaLLSRCRVHVLEGVSPQDIVEALQRAlrdAERglgaETIQVSEASLLEIASAADGDVRRALTLLEIAA 228
Cdd:PRK14964 153 TTEVKKIPVT--IISRCQRFDLQKIPTDKLVEHLVDI---AKK----ENIEHDEESLKLIAENSSGSMRNALFLLEQAA 222
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
51-168 |
3.12e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 49.97 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 51 RRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAEFKAISA-------VLSGLPEVRQVLAEAAQRfaggCRTVLFVDE 123
Cdd:cd19481 18 LRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLssllskyVGESEKNLRKIFERARRL----APCILFIDE 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2794475719 124 VH-----RFNKAQQD-------AFLPHIE----RGTILFVGATteNPSFELNSALLSRCRV 168
Cdd:cd19481 94 IDaigrkRDSSGESGelrrvlnQLLTELDgvnsRSKVLVIAAT--NRPDLLDPALLRPGRF 152
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
61-166 |
1.02e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 47.67 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 61 SMILWGPPGCGKTTLALLLAH------------YAD---AEFKAISAVLSGLPE-VRQVLAEAAQRfagGCrtVLFVDEV 124
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAalsnrpvfyvqlTRDtteEDLFGRRNIDPGGASwVDGPLVRAARE---GE--IAVLDEI 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 125 HRFNKAQQDAFLPHIERGTIL----------------FVGATTENPS--FELNSALLSRC 166
Cdd:pfam07728 76 NRANPDVLNSLLSLLDERRLLlpdggelvkaapdgfrLIATMNPLDRglNELSPALRSRF 135
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
25-249 |
2.54e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 50.11 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEfKAISAVLSG------- 96
Cdd:PRK14949 6 LARKWRPATFEQMVGQSHVL---HALTNALTQQRLHHAYLFtGTRGVGKTSLARLFAKGLNCE-QGVTATPCGvcsscve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 97 --------LPEV-----------RQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILFVGATTEnPS 155
Cdd:PRK14949 82 iaqgrfvdLIEVdaasrtkvddtRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPehVKFLLATTD-PQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 156 fELNSALLSRCRVHVLEGVSPQDIVEALQRAlrdaergLGAETIQVSEASLLEIASAADGDVRRALTLLEIAAELAAGEG 235
Cdd:PRK14949 161 -KLPVTVLSRCLQFNLKSLTQDEIGTQLNHI-------LTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQV 232
|
250 260
....*....|....*....|....*.
gi 2794475719 236 ---------GEITPQ---TLLQVLAD 249
Cdd:PRK14949 233 mltqvqtmlGSIDEQhviALLKALTD 258
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
174-247 |
2.67e-06 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 44.80 E-value: 2.67e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2794475719 174 VSPQDIVEALQRALrdaerglGAETIQVSEASLLEIASAADGDVRRALTLLEiaaELAAGEGGEITPQTLLQVL 247
Cdd:cd18137 1 ISVEDIVGRLAHIL-------EKEGIEIEDEALELIARAAEGSMRDALSLLD---QAIAFGGGRVTLDDVREML 64
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
25-237 |
5.88e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.69 E-value: 5.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAHYADAEFKAIS------------ 91
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFtGTRGVGKTTLSRIFAKALNCETGVTSqpcgvcracrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 92 -------------AVLSGLPEV-----RQVLAEAAQRFaggcrTVLFVDEVHRFNKAQQDAFL-------PHIErgtilF 146
Cdd:PRK07003 83 degrfvdyvemdaASNRGVDEMaalleRAVYAPVDARF-----KVYMIDEVHMLTNHAFNAMLktleeppPHVK-----F 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 147 VGATTENPSFELNsaLLSRCRVHVLEGVSPQDIVEALqralrdaERGLGAETIQVSEASLLEIASAADGDVRRALTLLEI 226
Cdd:PRK07003 153 ILATTDPQKIPVT--VLSRCLQFNLKQMPAGHIVSHL-------ERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ 223
|
250
....*....|.
gi 2794475719 227 AAELAAGEGGE 237
Cdd:PRK07003 224 AIAYSANEVTE 234
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
25-247 |
6.55e-06 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 48.34 E-value: 6.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLLAPdsaLRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYADA------------------ 85
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEP---LSSALDAGRInHAYLFSGPRGCGKTSSARILARSLNCaqgptatpcgvcescval 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 86 -----------EFKAISAvlSGLPEVRQV-----LAEAAQRFaggcrTVLFVDEVHRFNKAQQDAFLPHIER--GTILFV 147
Cdd:PRK14952 80 apngpgsidvvELDAASH--GGVDDTRELrdrafYAPAQSRY-----RIFIVDEAHMVTTAGFNALLKIVEEppEHLIFI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 148 GATTEnPSFELNSaLLSRCRVHVLEGVSPQDIvealqRALrdAERGLGAETIQVSEASLLEIASAADGDVRRALTLLEia 227
Cdd:PRK14952 153 FATTE-PEKVLPT-IRSRTHHYPFRLLPPRTM-----RAL--IARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLD-- 221
|
250 260
....*....|....*....|.
gi 2794475719 228 aELAAG-EGGEITPQTLLQVL 247
Cdd:PRK14952 222 -QLLAGaADTHVTYQRALGLL 241
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
30-224 |
8.05e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 47.72 E-value: 8.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 30 RPRTLDEMVGQKrllAPDSALRRAVESGRV-HSMILWGPPGCGKTTLA-----LLLAHYADAEFKAISAVLS-------- 95
Cdd:PRK07471 14 HPRETTALFGHA---AAEAALLDAYRSGRLhHAWLIGGPQGIGKATLAyrmarFLLATPPPGGDGAVPPPTSlaidpdhp 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 96 -----------GLPEVRQVLAEAAQRF--------------------AGGCRTVLFVDEVHRFNKAQQDAFLPHIE---- 140
Cdd:PRK07471 91 varriaagahgGLLTLERSWNEKGKRLrtvitvdevrelisffgltaAEGGWRVVIVDTADEMNANAANALLKVLEeppa 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 141 RGTILFVgatTENPSfELNSALLSRCRVHVLEGVSPQDIVEALQRALRDAERGLGAetiqvseasllEIASAADGDVRRA 220
Cdd:PRK07471 171 RSLFLLV---SHAPA-RLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPRA-----------ALAALAEGSVGRA 235
|
....
gi 2794475719 221 LTLL 224
Cdd:PRK07471 236 LRLA 239
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
28-80 |
8.88e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 8.88e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2794475719 28 RMRPRTLDEMVGQKRLLAPdsaLRRAVESGRVHSMILW-GPPGCGKTTLALLLA 80
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTEP---LSTALDSGRINHAYLFsGPRGCGKTSSARILA 58
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
63-124 |
9.03e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 45.75 E-value: 9.03e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 63 ILWGPPGCGKTTLALLLAHYADAEFKAIS--AVLSGLP-EVRQVLAEAAQRFAGGCRTVLFVDEV 124
Cdd:cd19503 38 LLHGPPGTGKTLLARAVANEAGANFLSISgpSIVSKYLgESEKNLREIFEEARSHAPSIIFIDEI 102
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
48-240 |
9.14e-06 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 47.54 E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 48 SALRRAVESGRVHSMILWGPPGCGKTTLALLLA----------------HYADA-----EFKAISAVL-----------S 95
Cdd:COG1474 40 SALRPALRGERPSNVLIYGPTGTGKTAVAKYVLeeleeeaeergvdvrvVYVNCrqastRYRVLSRILeelgsgedipsT 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 96 GLP--EVRQVLAEAAQRFAGgcrTVLFV-DEVHRFNKAQQDAFL-------PHIERGTILFVGATTeNPSF--ELNSALL 163
Cdd:COG1474 120 GLStdELFDRLYEALDERDG---VLVVVlDEIDYLVDDEGDDLLyqllranEELEGARVGVIGISN-DLEFleNLDPRVK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 164 SRCRVHVLEgVSP------QDIVEalQRAlrdaERGL--GAetiqVSEASLLEIASAA---DGDVRRALTLLEIAAELAA 232
Cdd:COG1474 196 SSLGEEEIV-FPPydadelRDILE--DRA----ELAFydGV----LSDEVIPLIAALAaqeHGDARKAIDLLRVAGEIAE 264
|
....*....
gi 2794475719 233 GEGGE-ITP 240
Cdd:COG1474 265 REGSDrVTE 273
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
49-124 |
1.95e-05 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 44.58 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 49 ALRRAVESGRVHS-------------MILWGPPGCGKTTLALLLAHYADAEFKAISA--VLS---GLPE--VRQVLAEAA 108
Cdd:cd19511 4 ELKEAVEWPLKHPdafkrlgirppkgVLLYGPPGCGKTLLAKALASEAGLNFISVKGpeLFSkyvGESEraVREIFQKAR 83
|
90
....*....|....*.
gi 2794475719 109 QrfAGGCrtVLFVDEV 124
Cdd:cd19511 84 Q--AAPC--IIFFDEI 95
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
60-163 |
2.56e-05 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 46.64 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 60 HSMILwGPPGCGKTTLALLLAHYA--------DAEFKA------------ISAVL--------SGLPEVRQVLAEAAQrf 111
Cdd:COG1221 132 HTLIL-GPTGVGKSFFAELMYEYAieigvlpeDAPFVVfncadyannpqlLMSQLfgyvkgafTGADKDKEGLIEKAD-- 208
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 112 aGGcrtVLFVDEVHRFNKAQQDAFLPHIERGT--------------ILFVGATTENPsfelNSALL 163
Cdd:COG1221 209 -GG---ILFLDEVHRLPPEGQEMLFTFMDKGIyrrlgetektrkanVRIIFATTEDP----ESSLL 266
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
61-170 |
3.20e-05 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 44.27 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 61 SMILWGPPGCGKTTLALLLAHYADAEFKAISA--VLS---GLPE--VRQVLAEAAQRFAggcrTVLFVDEV--------- 124
Cdd:cd19509 34 GILLYGPPGTGKTLLARAVASESGSTFFSISAssLVSkwvGESEkiVRALFALARELQP----SIIFIDEIdsllsergs 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 125 --HRFNKAQQDAFL------PHIERGTILFVGATteNPSFELNSALLSRC--RVHV 170
Cdd:cd19509 110 geHEASRRVKTEFLvqmdgvLNKPEDRVLVLGAT--NRPWELDEAFLRRFekRIYI 163
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
32-131 |
5.46e-05 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 43.27 E-value: 5.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 32 RTLDEMVgQKRLLAPDSALRRAVESGRvhSMILWGPPGCGKTTLALLLAHYADAEFKAISA--VLS---GLPE--VRQVL 104
Cdd:cd19528 3 RELQELV-QYPVEHPDKFLKFGMTPSK--GVLFYGPPGCGKTLLAKAIANECQANFISVKGpeLLTmwfGESEanVRDIF 79
|
90 100
....*....|....*....|....*..
gi 2794475719 105 AEAaqRFAGGCrtVLFVDEVHRFNKAQ 131
Cdd:cd19528 80 DKA--RAAAPC--VLFFDELDSIAKAR 102
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
25-237 |
5.53e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 45.70 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLlapDSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYAD------------------- 84
Cdd:PRK14954 6 IARKYRPSKFADITAQEHI---THTIQNSLRMDRVgHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddpvylqevtepcg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 85 ----------------AEFKAISAvlSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIER--GTILF 146
Cdd:PRK14954 83 ecescrdfdagtslniSEFDAASN--NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEppPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 147 VGATTEnpSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEI 226
Cdd:PRK14954 161 IFATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICR-------AEGIQIDADALQLIARKAQGSMRDAQSILDQ 231
|
250
....*....|.
gi 2794475719 227 AAELAAGEGGE 237
Cdd:PRK14954 232 VIAFSVGSEAE 242
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
25-247 |
6.66e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 44.88 E-value: 6.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 25 LAERMRPRTLDEMVGQKRLlapDSALRRAVESGRV-HSMILWGPPGCGKTTLALLLAHYAD------------------- 84
Cdd:PRK14955 6 IARKYRPKKFADITAQEHI---TRTIQNSLRMGRVgHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddadylqevtepcg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 85 ----------------AEFKAISAvlSGLPEVRQVLAEAAQRFAGGCRTVLFVDEVHRFNKAQQDAFLPHIERGT--ILF 146
Cdd:PRK14955 83 ecescrdfdagtslniSEFDAASN--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPphAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 147 VGATTEnpSFELNSALLSRCRVHVLEGVSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLE- 225
Cdd:PRK14955 161 IFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE-------AEGISVDADALQLIGRKAQGSMRDAQSILDq 231
|
250 260
....*....|....*....|...
gi 2794475719 226 -IAAELAAGEGGEITPQTLLQVL 247
Cdd:PRK14955 232 vIAFSVESEGEGSIRYDKVAELL 254
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
24-294 |
9.24e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 44.95 E-value: 9.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 24 PLAERMRPRTLDEMVGQKrllAPDSALRRAVESGRVHSMILW-GPPGCGKTTLALLLAH--------------------- 81
Cdd:PRK14948 5 PLHHKYRPQRFDELVGQE---AIATTLKNALISNRIAPAYLFtGPRGTGKTSSARILAKslnclnsdkptpepcgkcelc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 82 ------YA------DAefkaisAVLSGLPEVRQvLAEAAQrFAG-GCR-TVLFVDEVHRFNKAQQDAFLPHIE----Rgt 143
Cdd:PRK14948 82 raiaagNAldvieiDA------ASNTGVDNIRE-LIERAQ-FAPvQARwKVYVIDECHMLSTAAFNALLKTLEepppR-- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 144 ILFVGATTeNPSFELNSaLLSRCRVHVLEGVSPQDIVEALQRAlrdAERglgaETIQVSEASLLEIASAADGDVRRALTL 223
Cdd:PRK14948 152 VVFVLATT-DPQRVLPT-IISRCQRFDFRRIPLEAMVQHLSEI---AEK----ESIEIEPEALTLVAQRSQGGLRDAESL 222
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2794475719 224 LEIAAELAagegGEITPQTLLQVLadrtrrfdknGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDP 294
Cdd:PRK14948 223 LDQLSLLP----GPITPEAVWDLL----------GAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREP 279
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
33-123 |
9.31e-05 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 44.23 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 33 TLDEMVG---QKRllapdsALRRAVESGRVHS-------------MILWGPPGCGKTTLALLLAHYADAEFKAI--SAVL 94
Cdd:COG1222 76 TFDDIGGldeQIE------EIREAVELPLKNPelfrkygieppkgVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgSELV 149
|
90 100 110
....*....|....*....|....*....|....
gi 2794475719 95 S-----GLPEVRQVLaEAAQRFAggcRTVLFVDE 123
Cdd:COG1222 150 SkyigeGARNVREVF-ELAREKA---PSIIFIDE 179
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
62-187 |
1.02e-04 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 42.80 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 62 MILWGPPGCGKTTLALLLAHYADAEFkaISAVLSGLPEV----RQVLAEA----AQRFAggcRTVLFVDEVhrfnkaqqD 133
Cdd:cd19520 38 VLLYGPPGCGKTMLAKATAKEAGARF--INLQVSSLTDKwygeSQKLVAAvfslASKLQ---PSIIFIDEI--------D 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 134 AFLPHiERGTILFVGATTENPSFELNSALLS--RCRVHVLEGVS-PQDIVEALQRAL 187
Cdd:cd19520 105 SFLRQ-RSSTDHEATAMMKAEFMSLWDGLSTdgNCRVIVMGATNrPQDLDEAILRRM 160
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
43-150 |
1.05e-04 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 42.48 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 43 LLAPDSALRRAVESGRvhSMILWGPPGCGKTTLALLLAHYADAEFKAISA--VLS---GLPE--VRQVLAEAAQrfagGC 115
Cdd:cd19529 13 LLKPEVFKRLGIRPPK--GILLYGPPGTGKTLLAKAVATESNANFISVKGpeLLSkwvGESEkaIREIFRKARQ----VA 86
|
90 100 110
....*....|....*....|....*....|....*
gi 2794475719 116 RTVLFVDEVhrfnkaqqDAFLPhiERGTILFVGAT 150
Cdd:cd19529 87 PCVIFFDEI--------DSIAP--RRGTTGDSGVT 111
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
62-124 |
1.89e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 42.01 E-value: 1.89e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 62 MILWGPPGCGKTTLALLLAHYADAEFKAISA--VLSGLP-----EVRQVLAEAAQRfaGGCrtVLFVDEV 124
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELKVPFLKISAteIVSGVSgeseeKIRELFDQAISN--APC--IVFIDEI 102
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
62-124 |
3.90e-04 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 40.93 E-value: 3.90e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 62 MILWGPPGCGKTTLALLLAHYADAEFKAISAvlsglPE------------VRQVLaeaaQRFAGGCRTVLFVDEV 124
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKG-----PEllnkyvgeseraVRQVF----QRARASAPCVIFFDEV 98
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
63-163 |
4.92e-04 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 40.78 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 63 ILWGPPGCGKTTLALLLAHYADAEFkaisavlsglpeVRQVLAEAAQRFAG-GCRTV--------------LFVDEV--- 124
Cdd:cd19502 41 LLYGPPGTGKTLLAKAVANHTDATF------------IRVVGSELVQKYIGeGARLVrelfemarekapsiIFIDEIdai 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 125 --HRFNK----------------AQQDAFLPhieRGTILFVGATteNPSFELNSALL 163
Cdd:cd19502 109 gaKRFDSgtggdrevqrtmlellNQLDGFDP---RGNIKVIMAT--NRPDILDPALL 160
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
24-72 |
5.53e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 42.52 E-value: 5.53e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2794475719 24 PLAERMRPRTLDEMVGQKRLLapdSALRRAVESGRVHSMILWGPPGCGK 72
Cdd:PRK04132 8 PWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGK 53
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
63-124 |
5.60e-04 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 40.68 E-value: 5.60e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2794475719 63 ILWGPPGCGKTTLALLLAHYADAEFKAISA-------VLSGLPEVRQVLAEAAQRfaggCRTVLFVDEV 124
Cdd:cd19501 41 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGsdfvemfVGVGASRVRDLFEQAKKN----APCIVFIDEI 105
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
36-130 |
9.13e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 41.47 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 36 EMVGQKRLLapDSALRRAVESGRVhsMILWGPPGCGKTTLALLLA------HYADAEFKAISAVLSGLPEvrQVLAEAAQ 109
Cdd:COG1373 1 VMIMIKRKI--LDKLLKLLDNRKA--VVITGPRQVGKTTLLKQLAkeleniLYINLDDPRLRALAEEDPD--DLLEALKE 74
|
90 100
....*....|....*....|.
gi 2794475719 110 RFAGgcRTVLFVDEVHRFNKA 130
Cdd:COG1373 75 LYPG--KTYLFLDEIQRVPEW 93
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
174-246 |
1.10e-03 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 37.12 E-value: 1.10e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2794475719 174 VSPQDIVEALQRALRdaerglgAETIQVSEASLLEIASAADGDVRRALTLLEIAAELaageGGEITPQTLLQV 246
Cdd:cd18140 1 LSKEQIVKRLREICK-------KEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAG----GGVITEEDVYEV 62
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
63-134 |
1.64e-03 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 38.92 E-value: 1.64e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 63 ILWGPPGCGKTTLALLLAHYADAEFKAISAVLSGLPE-VRQVLAEAAQRFAGGCRTVLFVDEV---HRFNKAQQDA 134
Cdd:cd00046 5 LITAPTGSGKTLAALLAALLLLLKKGKKVLVLVPTKAlALQTAERLRELFGPGIRVAVLVGGSsaeEREKNKLGDA 80
|
|
| DUF815 |
pfam05673 |
Protein of unknown function (DUF815); This family consists of several bacterial proteins of ... |
33-122 |
2.81e-03 |
|
Protein of unknown function (DUF815); This family consists of several bacterial proteins of unknown function.
Pssm-ID: 428578 [Multi-domain] Cd Length: 250 Bit Score: 39.44 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 33 TLDEMVG---QKRLLapDSALRRAVESGRVHSMILWGPPGCGKTTL--AlLLAHYADAEFKAISAV---LSGLPEVRQVL 104
Cdd:pfam05673 26 RLDDLVGierQKEAL--IRNTRRFLAGLPANNVLLWGARGTGKSSLvkA-LLNEYADQGLRLIEVDkedLGDLPDLVDLL 102
|
90
....*....|....*...
gi 2794475719 105 AEAAQRFaggcrtVLFVD 122
Cdd:pfam05673 103 RDRPYRF------ILFCD 114
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
51-76 |
3.13e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 38.67 E-value: 3.13e-03
10 20
....*....|....*....|....*....
gi 2794475719 51 RRAVE---SGRvHSMILWGPPGCGKTTLA 76
Cdd:pfam01078 12 KRALEiaaAGG-HNLLMIGPPGSGKTMLA 39
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
64-124 |
3.52e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 39.43 E-value: 3.52e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2794475719 64 LWGPPGCGKTTLALLLAHYADAEFkaisavlsglpeVRQVLAEAAQRFAG-GCRTV--------------LFVDEV 124
Cdd:PRK03992 170 LYGPPGTGKTLLAKAVAHETNATF------------IRVVGSELVQKFIGeGARLVrelfelarekapsiIFIDEI 233
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
63-124 |
3.82e-03 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 39.36 E-value: 3.82e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 63 ILWGPPGCGKTTLALLLAHYADAEFkaisavlsglpeVRQVLAEAAQRFAG-GCRTV--------------LFVDEV 124
Cdd:PTZ00454 183 LLYGPPGTGKTMLAKAVAHHTTATF------------IRVVGSEFVQKYLGeGPRMVrdvfrlarenapsiIFIDEV 247
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
54-179 |
4.53e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 38.86 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 54 VESGRV-HSMILWGPPGCGKTTLALLLA----------HYAD-AEFKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVLFV 121
Cdd:PRK05564 20 IIKNRFsHAHIIVGEDGIGKSLLAKEIAlkilgksqqrEYVDiIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIII 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2794475719 122 DEVHRFNKAQQDAFLPHIE---RGTILFVgaTTENPSFELNSaLLSRCRVHVLEGVSPQDI 179
Cdd:PRK05564 100 YNSEKMTEQAQNAFLKTIEeppKGVFIIL--LCENLEQILDT-IKSRCQIYKLNRLSKEEI 157
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
32-221 |
4.54e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 39.44 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 32 RTLDEMVGQKRLLAPDSALRRAVE------------SGRVHSMILWGPPGCGKTTLAlllahyadaefKAISAVLSGL-- 97
Cdd:TIGR03922 273 AELAEQIGLERVKRQVAALKSSTAmalaraerglpvAQTSNHMLFAGPPGTGKTTIA-----------RVVAKIYCGLgv 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 98 ---PEVRQV---------LAEAAQR----FAGGCRTVLFVDEVHR-----------FNKAQQDAFLPHIE--RGTILFVG 148
Cdd:TIGR03922 342 lrkPLVREVsradligqyIGESEAKtneiIDSALGGVLFLDEAYTlvetgygqkdpFGLEAIDTLLARMEndRDRLVVIG 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 149 ATTENPS---FELNSALLSR-CRVHVLEGVSPQDIVEALQRALRDAERGLGAETIQVSEASLLEIASA----ADGDVRRA 220
Cdd:TIGR03922 422 AGYRKDLdkfLEVNEGLRSRfTRVIEFPSYSPDELVEIARRMATERDSVLDDAAADALLEAATTLAQDttpdANGDLRRG 501
|
.
gi 2794475719 221 L 221
Cdd:TIGR03922 502 L 502
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
66-119 |
5.12e-03 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 37.47 E-value: 5.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2794475719 66 GPPGCGKTTLALLLA-----HYADA------EFKAISAVLSGLPEVRQVLAEAAQRFAGGCRTVL 119
Cdd:cd02020 6 GPAGSGKSTVAKLLAkklglPYLDTggirteEVGKLASEVAAIPEVRKALDERQRELAKKPGIVL 70
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
38-119 |
5.22e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.87 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 38 VGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAHYADAE--------------FKAISAVLSGLPEVRQV 103
Cdd:pfam13191 3 VGREEELEQLLDALDRVRSGRPPSVLLTGEAGTGKTTLLRELLRALERDggyflrgkcdenlpYSPLLEALTREGLLRQL 82
|
90
....*....|....*.
gi 2794475719 104 LAEAAQRFAGGCRTVL 119
Cdd:pfam13191 83 LDELESSLLEAWRAAL 98
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
61-131 |
6.33e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 36.94 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 61 SMILWGPPGCGKTTLA-LLLAHYADAEFKAISAVLSGLPEVRQVLAEAAQRF----------------------AGGCRT 117
Cdd:pfam13401 7 ILVLTGESGTGKTTLLrRLLEQLPEVRDSVVFVDLPSGTSPKDLLRALLRALglplsgrlskeellaalqqlllALAVAV 86
|
90
....*....|....
gi 2794475719 118 VLFVDEVHRFNKAQ 131
Cdd:pfam13401 87 VLIIDEAQHLSLEA 100
|
|
| cell_div_CdvC |
NF041006 |
cell division protein CdvC; |
62-124 |
7.75e-03 |
|
cell division protein CdvC;
Pssm-ID: 468935 [Multi-domain] Cd Length: 371 Bit Score: 38.56 E-value: 7.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2794475719 62 MILWGPPGCGKTTLALLLAHYADAEFKAISA--VLSglpevrQVLAEAAQRFAG------------GCRTVLFVDEV 124
Cdd:NF041006 137 ILLYGPPGCGKTMLAAAVANEIDSEFIHVDAasIMS------KWLGEAEKNVAKifkkarekskeeGKPAIIFIDEI 207
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
64-158 |
8.30e-03 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 37.33 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2794475719 64 LWGPPGCGKTTLALLLAhyADAEFKAISAV----LSGLPEVRQV-LAEAAQRFAGGCRTVLfvDEVHRFnkaQQDAFLPH 138
Cdd:cd01393 6 IYGPPGSGKTQLALQLA--ANALLLGGGVVwidtEGAFPPSRLVqILEASPSSELELAEAL--SRLLYF---RPPDTLAH 78
|
90 100
....*....|....*....|
gi 2794475719 139 IERGTILfVGATTENPSFEL 158
Cdd:cd01393 79 LLALDSL-PESLFPPPNTSL 97
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
51-76 |
9.38e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 38.48 E-value: 9.38e-03
10 20
....*....|....*....|....*....
gi 2794475719 51 RRAVE---SGRvHSMILWGPPGCGKTTLA 76
Cdd:COG0606 201 KRALEiaaAGG-HNLLMIGPPGSGKTMLA 228
|
|
| |
