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Conserved domains on  [gi|2796055992|ref|WP_372816016|]
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family 4B encapsulin nanocompartment shell protein [Pyrococcus kukulkanii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
encap_f4b NF041191
family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments ...
 16-89 3.31e-36

family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments are commonly found in bacteria and archaea. Encapsulin nanocompartments, which are assembled from shell proteins, encapsulate various cargo proteins, typically peroxidases or ferritin-like proteins, to protect cells from oxidative stress caused by peroxide.


:

Pssm-ID: 469095  Cd Length: 90  Bit Score: 118.51  E-value: 3.31e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796055992  16 QLIDLITTAINELREEGLEPDIMLVGPDFQKHlTEDLSRLVNLRIYVIEELGADAVIADSKYMGQLKKASKRIS 89
Cdd:NF041191    1 ELLELLETAINELKEEGLEPDILLVGPGFIEY-AGEVLKDLGLKVYRIEELGYDAVIADSKYLGQLKKASRRIS 73
 
Name Accession Description Interval E-value
encap_f4b NF041191
family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments ...
 16-89 3.31e-36

family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments are commonly found in bacteria and archaea. Encapsulin nanocompartments, which are assembled from shell proteins, encapsulate various cargo proteins, typically peroxidases or ferritin-like proteins, to protect cells from oxidative stress caused by peroxide.


Pssm-ID: 469095  Cd Length: 90  Bit Score: 118.51  E-value: 3.31e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796055992  16 QLIDLITTAINELREEGLEPDIMLVGPDFQKHlTEDLSRLVNLRIYVIEELGADAVIADSKYMGQLKKASKRIS 89
Cdd:NF041191    1 ELLELLETAINELKEEGLEPDILLVGPGFIEY-AGEVLKDLGLKVYRIEELGYDAVIADSKYLGQLKKASRRIS 73
DUF1884 pfam08967
Domain of unknown function (DUF1884); This domain is found in a set of hypothetical bacterial ...
 13-89 1.99e-21

Domain of unknown function (DUF1884); This domain is found in a set of hypothetical bacterial proteins. It shows similarity to the N-terminus of ATP-synthase.


Pssm-ID: 370216  Cd Length: 92  Bit Score: 81.12  E-value: 1.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796055992  13 ITTQLIDLITTAINELREEGLEPDIMLVGPDFQKHLTEDLSR----------LVNLRIYVIEELGADAVIADSKYMGQLK 82
Cdd:pfam08967   3 DLIRILESIEEKINELKLEGFEPDIILAGPEAYEFLKEQVKEefggeeevfeLSNLKVYILEELGGDAVVADSKYLGQIP 82


                  ....*..
gi 2796055992  83 KASKRIS 89
Cdd:pfam08967  83 KAARRIK 89
 
Name Accession Description Interval E-value
encap_f4b NF041191
family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments ...
 16-89 3.31e-36

family 4B encapsulin nanocompartment shell protein; Capsid-like encapsulin nanocompartments are commonly found in bacteria and archaea. Encapsulin nanocompartments, which are assembled from shell proteins, encapsulate various cargo proteins, typically peroxidases or ferritin-like proteins, to protect cells from oxidative stress caused by peroxide.


Pssm-ID: 469095  Cd Length: 90  Bit Score: 118.51  E-value: 3.31e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796055992  16 QLIDLITTAINELREEGLEPDIMLVGPDFQKHlTEDLSRLVNLRIYVIEELGADAVIADSKYMGQLKKASKRIS 89
Cdd:NF041191    1 ELLELLETAINELKEEGLEPDILLVGPGFIEY-AGEVLKDLGLKVYRIEELGYDAVIADSKYLGQLKKASRRIS 73
DUF1884 pfam08967
Domain of unknown function (DUF1884); This domain is found in a set of hypothetical bacterial ...
 13-89 1.99e-21

Domain of unknown function (DUF1884); This domain is found in a set of hypothetical bacterial proteins. It shows similarity to the N-terminus of ATP-synthase.


Pssm-ID: 370216  Cd Length: 92  Bit Score: 81.12  E-value: 1.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796055992  13 ITTQLIDLITTAINELREEGLEPDIMLVGPDFQKHLTEDLSR----------LVNLRIYVIEELGADAVIADSKYMGQLK 82
Cdd:pfam08967   3 DLIRILESIEEKINELKLEGFEPDIILAGPEAYEFLKEQVKEefggeeevfeLSNLKVYILEELGGDAVVADSKYLGQIP 82


                  ....*..
gi 2796055992  83 KASKRIS 89
Cdd:pfam08967  83 KAARRIK 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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