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Conserved domains on  [gi|2771098198|gb|XCX57634|]
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DUF3817 domain-containing protein [Bdellovibrio bacteriovorus]

Protein Classification

DUF3817 domain-containing protein( domain architecture ID 10581998)

DUF3817 domain-containing protein similar to Bacillus subtilis membrane protein YdzA

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3817 pfam12823
Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes ...
 2-89 5.15e-31

Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.


:

Pssm-ID: 432809  Cd Length: 89  Bit Score: 104.48  E-value: 5.15e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2771098198  2 IQAFRILGWLEGASFLILLLIAMPMKYMAGNPALVKSMGPIHGFLFIGYILMANFIASELNWSMKQRILSFAAAVLPAGT 81
Cdd:pfam12823  1 LRRFRVIAIAEGVSLLLLLLVAMPLKYLADNPEAVKIVGPIHGLLFVAYLVLALDLARKARWSLKRTLLALLASVVPFGT 80


                 ....*...
gi 2771098198 82 FWFERKYL 89
Cdd:pfam12823 81 FVVERKLR 88
 
Name Accession Description Interval E-value
DUF3817 pfam12823
Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes ...
 2-89 5.15e-31

Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.


Pssm-ID: 432809  Cd Length: 89  Bit Score: 104.48  E-value: 5.15e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2771098198  2 IQAFRILGWLEGASFLILLLIAMPMKYMAGNPALVKSMGPIHGFLFIGYILMANFIASELNWSMKQRILSFAAAVLPAGT 81
Cdd:pfam12823  1 LRRFRVIAIAEGVSLLLLLLVAMPLKYLADNPEAVKIVGPIHGLLFVAYLVLALDLARKARWSLKRTLLALLASVVPFGT 80


                 ....*...
gi 2771098198 82 FWFERKYL 89
Cdd:pfam12823 81 FVVERKLR 88
integ_memb_HG TIGR03954
integral membrane protein; This model describes a strictly bacterial integral membrane domain ...
 5-89 2.52e-30

integral membrane protein; This model describes a strictly bacterial integral membrane domain of about 85 residues in length. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices. [Unknown function, General]


Pssm-ID: 274878  Cd Length: 85  Bit Score: 102.57  E-value: 2.52e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2771098198  5 FRILGWLEGASFLILLLIAMPMKYMAGNPALVKSMGPIHGFLFIGYILMANFIASELNWSMKQRILSFAAAVLPAGTFWF 84
Cdd:TIGR03954  1 FRVIAFAEGVSLLLLLFIAMPLKYLAGNPEAVKIVGPIHGVLFILYLVAALDLARKARWSLKRTLLALLASVIPFGSFVF 80


                 ....*
gi 2771098198 85 ERKYL 89
Cdd:TIGR03954 81 ERKLR 85
 
Name Accession Description Interval E-value
DUF3817 pfam12823
Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes ...
 2-89 5.15e-31

Domain of unknown function (DUF3817); This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.


Pssm-ID: 432809  Cd Length: 89  Bit Score: 104.48  E-value: 5.15e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2771098198  2 IQAFRILGWLEGASFLILLLIAMPMKYMAGNPALVKSMGPIHGFLFIGYILMANFIASELNWSMKQRILSFAAAVLPAGT 81
Cdd:pfam12823  1 LRRFRVIAIAEGVSLLLLLLVAMPLKYLADNPEAVKIVGPIHGLLFVAYLVLALDLARKARWSLKRTLLALLASVVPFGT 80


                 ....*...
gi 2771098198 82 FWFERKYL 89
Cdd:pfam12823 81 FVVERKLR 88
integ_memb_HG TIGR03954
integral membrane protein; This model describes a strictly bacterial integral membrane domain ...
 5-89 2.52e-30

integral membrane protein; This model describes a strictly bacterial integral membrane domain of about 85 residues in length. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices. [Unknown function, General]


Pssm-ID: 274878  Cd Length: 85  Bit Score: 102.57  E-value: 2.52e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2771098198  5 FRILGWLEGASFLILLLIAMPMKYMAGNPALVKSMGPIHGFLFIGYILMANFIASELNWSMKQRILSFAAAVLPAGTFWF 84
Cdd:TIGR03954  1 FRVIAFAEGVSLLLLLFIAMPLKYLAGNPEAVKIVGPIHGVLFILYLVAALDLARKARWSLKRTLLALLASVIPFGSFVF 80


                 ....*
gi 2771098198 85 ERKYL 89
Cdd:TIGR03954 81 ERKLR 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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