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Conserved domains on  [gi|2785551963|gb|XDY02805|]
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quinolone resistance pentapeptide repeat protein QnrS1 (plasmid) [Klebsiella pneumoniae subsp. pneumoniae]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-204 8.99e-30

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 108.88  E-value: 8.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTFIRSDFRRANLRDTTFVNCkfIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA--LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  97 ANFSRTNFAHqvsnrmyFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEdvwgqFSLQG 176
Cdd:COG1357    79 ADLSGANLAN-------LSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG-----ANLSG 146

                         170       180
                  ....*....|....*....|....*...
gi 2785551963 177 ANLCHAELDGLDPRKVDTSGIKIAAWQQ 204
Cdd:COG1357   147 ADLSGADLSGANLSGANLSGANLANLEG 174
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-204 8.99e-30

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 108.88  E-value: 8.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTFIRSDFRRANLRDTTFVNCkfIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA--LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  97 ANFSRTNFAHqvsnrmyFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEdvwgqFSLQG 176
Cdd:COG1357    79 ADLSGANLAN-------LSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG-----ANLSG 146

                         170       180
                  ....*....|....*....|....*...
gi 2785551963 177 ANLCHAELDGLDPRKVDTSGIKIAAWQQ 204
Cdd:COG1357   147 ADLSGADLSGANLSGANLSGANLANLEG 174
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
17-99 2.33e-12

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 60.37  E-value: 2.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTFIRSDFRRANLRDTTFVNCKFieqgdiEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNL------VNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKG 75


                  ...
gi 2785551963  97 ANF 99
Cdd:pfam13599  76 ADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
12-166 7.41e-10

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 57.71  E-value: 7.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSD-----FRRANLRDTTFVNCKF----IEQGDIEGCHFDVADLRDASFQQCQLAmanfsna 82
Cdd:PRK15196  168 NLCDADLSGANLEGAVLFMADceganFKGANLSGTSLGDSNFknacLEDSIMCGATLDHANLTGANLQHASLL------- 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  83 NCYGIEfraCDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRG 162
Cdd:PRK15196  241 GCSMIE---CNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNT 317


                  ....
gi 2785551963 163 VFSE 166
Cdd:PRK15196  318 CFKD 321
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
17-204 8.99e-30

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 108.88  E-value: 8.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTFIRSDFRRANLRDTTFVNCkfIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA--LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  97 ANFSRTNFAHqvsnrmyFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEdvwgqFSLQG 176
Cdd:COG1357    79 ADLSGANLAN-------LSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG-----ANLSG 146

                         170       180
                  ....*....|....*....|....*...
gi 2785551963 177 ANLCHAELDGLDPRKVDTSGIKIAAWQQ 204
Cdd:COG1357   147 ADLSGADLSGANLSGANLSGANLANLEG 174
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
12-161 1.60e-22

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 90.00  E-value: 1.60e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVNCKFIeqgdieGCHFDVADLrdASFQQCQLAMANFSNANCYGIEFRA 91
Cdd:COG1357    40 NLSGANLTGANLSGADLSGADLSGANLSGADLSGANLT------GADLSGANL--ANLSGANLSGANLSGANLRGANLSG 111

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  92 CDLKGANFSRTNFAHqvsnrmyfcsAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSR 161
Cdd:COG1357   112 ANLSGADLSGADLSG----------ANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANLAN 171
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
17-99 2.33e-12

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 60.37  E-value: 2.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTFIRSDFRRANLRDTTFVNCKFieqgdiEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNL------VNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKG 75


                  ...
gi 2785551963  97 ANF 99
Cdd:pfam13599  76 ADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
12-166 7.41e-10

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 57.71  E-value: 7.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSD-----FRRANLRDTTFVNCKF----IEQGDIEGCHFDVADLRDASFQQCQLAmanfsna 82
Cdd:PRK15196  168 NLCDADLSGANLEGAVLFMADceganFKGANLSGTSLGDSNFknacLEDSIMCGATLDHANLTGANLQHASLL------- 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  83 NCYGIEfraCDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRG 162
Cdd:PRK15196  241 GCSMIE---CNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNT 317


                  ....
gi 2785551963 163 VFSE 166
Cdd:PRK15196  318 CFKD 321
PRK15196 PRK15196
type III secretion system effector PipB2;
62-186 1.80e-08

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 53.47  E-value: 1.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  62 ADLRDASFQQCQLAMANfsnanCYGIEFRACDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFE 141
Cdd:PRK15196  172 ADLSGANLEGAVLFMAD-----CEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIE 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2785551963 142 nrwigTNLAGASLKESDLSRGVFSEDVWGQFSLQGANLCHAELDG 186
Cdd:PRK15196  247 -----CNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEG 286
PRK15196 PRK15196
type III secretion system effector PipB2;
12-168 1.96e-08

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 53.47  E-value: 1.96e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVNCKFIEqgdiegCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRA 91
Cdd:PRK15196  208 NFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIE------CNCSGANMDHTNLSGATLIRADMSGATLQGATIMA 281

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2785551963  92 CDLKGANFSRTNFahqvsNRMYFCSAFISGCNLSYANMERVCLEKCELFENRwigTNLAGASLKESDLSRGVFSEDV 168
Cdd:PRK15196  282 AIMEGAVLTRANL-----RKASFISTNLDGADLAEANLNNTCFKDCTLTHLR---TEDATMSTSTQTLFNEFYSENI 350
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 62-104 1.01e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.17  E-value: 1.01e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2785551963  62 ADLRDASFQQCQLAMANFSNANcygieFRACDLKGANFSRTNF 104
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGAN-----LTGANLSGADLSGANL 38
PRK15197 PRK15197
type III secretion system effector PipB;
53-179 1.43e-05

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 44.92  E-value: 1.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  53 DIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRTNFAHqvsnrmyfcsafisgCNLSYANMERV 132
Cdd:PRK15197  165 DFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTH---------------ADLTCANMSGV 229

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2785551963 133 CLEKCELFENRWIGTNLAGASLKESDLSRGVfsedvwgqfSLQGANL 179
Cdd:PRK15197  230 NLTAAILFGSDLTDTKLNGAKLDKIALTLAK---------ALTGADL 267
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
12-107 3.44e-05

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 44.29  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVNCKFIEQGDIEGChfdvaDLRDASFQQCQLAMANFSNANCYGIEFRA 91
Cdd:PRK15377  191 TYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYS-----DISHLHFDECRFTYSTLSDVVCSNTKFSN 265

                          90
                  ....*....|....*.
gi 2785551963  92 CDLKGANFSRTNFAHQ 107
Cdd:PRK15377  266 SDMNEASLKYSITTQQ 281
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
53-139 1.52e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 39.18  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  53 DIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRTNFAHqvsnrmyfcsAFISGCNLSYANMERV 132
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKN----------AQFSGCNLKNSNFSDV 71


                  ....*..
gi 2785551963 133 CLEKCEL 139
Cdd:pfam13599  72 KLKGADF 78
PRK15197 PRK15197
type III secretion system effector PipB;
74-184 2.68e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 41.07  E-value: 2.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  74 LAMANFSNANCYGIEFRACDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGAS 153
Cdd:PRK15197  156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI 235

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2785551963 154 LKESDLSrgvfsedvwgQFSLQGANLCHAEL 184
Cdd:PRK15197  236 LFGSDLT----------DTKLNGAKLDKIAL 256
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 57-96 3.42e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 36.93  E-value: 3.42e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2785551963  57 CHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKG 96
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
87-162 3.83e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 38.02  E-value: 3.83e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2785551963  87 IEFRACDLKGANFSRTNFAHQVSNRMYFcsafiSGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRG 162
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNF-----TECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDV 71
PRK09718 PRK09718
SopA family protein;
17-174 4.50e-04

SopA family protein;


Pssm-ID: 182045 [Multi-domain]  Cd Length: 512  Bit Score: 40.80  E-value: 4.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  17 DLSDLTFTACTF-----IRSDFRRANLRDTTFvNCKfieqgDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRA 91
Cdd:PRK09718   91 DLSDLDLTSCHFkgdviSKVSFLSSNLQHVTF-ECK-----EIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYVDFSK 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  92 CDLKGANFSRTNFAHqvSNrmyFCSAFISGCNLSYANMERVCLEKCELFENR---WIGTNLAGASLKESDLSRGVFSEDV 168
Cdd:PRK09718  165 NILDTVDFSQSQLTH--SN---FRECQIRNSNFDNCYLYASHFTRAEFLSAKeisFIKSNLTAVMFDHVRISTGNFKDCI 239


                  ....*.
gi 2785551963 169 WGQFSL 174
Cdd:PRK09718  240 TEQLEL 245
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 77-135 8.29e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.78  E-value: 8.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2785551963  77 ANFSNANcygieFRACDLKGANFSRTNFahqvsnrmyfcsafiSGCNLSYANMERVCLE 135
Cdd:pfam00805   1 ANLSGAN-----LSGANLSGANLSGANL---------------TGANLSGADLSGANLS 39
PRK15197 PRK15197
type III secretion system effector PipB;
12-101 1.32e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 38.76  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785551963  12 NFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVN----CKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGI 87
Cdd:PRK15197  160 NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGanlcCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGS 239

                          90
                  ....*....|....
gi 2785551963  88 EFRACDLKGANFSR 101
Cdd:PRK15197  240 DLTDTKLNGAKLDK 253
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 92-139 9.05e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 33.08  E-value: 9.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2785551963  92 CDLKGANFSRTNFAHqvsnrmyfcsAFISGCNLSYANMERVCLEKCEL 139
Cdd:pfam00805   1 ANLSGANLSGANLSG----------ANLSGANLTGANLSGADLSGANL 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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