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Conserved domains on  [gi|124803597|ref|XP_001347766|]
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AP2 domain transcription factor, putative [Plasmodium falciparum 3D7]

Protein Classification

AP2/ERF family transcription factor( domain architecture ID 10467204)

AP2/ERF family transcription factor binds to the GCC-box pathogenesis-related promoter element; similar to Plasmodium falciparum AP2/ERF domain-containing protein PFD0985w

CATH:  3.30.730.10
Gene Ontology:  GO:0003700|GO:0003677|GO:0006355
PubMed:  15708341
SCOP:  4000937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 1488-1538 4.78e-05

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


:

Pssm-ID: 425904  Cd Length: 52  Bit Score: 42.62  E-value: 4.78e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 124803597  1488 KVKGVYFSKSprgVGKWNAYFQIaNNKRLFTSFSVSKYGYNEARKLSILKR 1538
Cdd:pfam00847    1 KIRGVRYDKK---WGRWVAEWSE-NGKRRKKRFSLGKYGTEEAKRAAIEAR 47
 
Name Accession Description Interval E-value
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 1488-1538 4.78e-05

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 42.62  E-value: 4.78e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 124803597  1488 KVKGVYFSKSprgVGKWNAYFQIaNNKRLFTSFSVSKYGYNEARKLSILKR 1538
Cdd:pfam00847    1 KIRGVRYDKK---WGRWVAEWSE-NGKRRKKRFSLGKYGTEEAKRAAIEAR 47
 
Name Accession Description Interval E-value
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 1488-1538 4.78e-05

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 42.62  E-value: 4.78e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 124803597  1488 KVKGVYFSKSprgVGKWNAYFQIaNNKRLFTSFSVSKYGYNEARKLSILKR 1538
Cdd:pfam00847    1 KIRGVRYDKK---WGRWVAEWSE-NGKRRKKRFSLGKYGTEEAKRAAIEAR 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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