|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
11-347 |
0e+00 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 631.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 11 SKVAATTEMEEEVTKEHQFQEIEKLQDLGINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIEN 90
Cdd:PTZ00035 2 QESQNEQQEEEEEEEAEGFQEIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 91 CsGFITAHQLVHKRSKVLKITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDT 170
Cdd:PTZ00035 82 M-GFISATEYLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 171 EGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQ 250
Cdd:PTZ00035 161 EGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 251 QKLNKTMSILSKLGEQFNIAVLITNQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPE 330
Cdd:PTZ00035 241 QHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPE 320
|
330
....*....|....*..
gi 156097941 331 VDCIFQLSDGGVIDATD 347
Cdd:PTZ00035 321 SEAVFAISEGGIIDAKD 337
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
32-345 |
0e+00 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 566.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 32 IEKLQDLGINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIENCsGFITAHQLVHKRSKVLKIT 111
Cdd:TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINP-GFITAFEISQKRKKVLKIT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 112 TGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGE 191
Cdd:TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 192 DVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNIAV 271
Cdd:TIGR02238 160 AVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 156097941 272 LITNQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVIDA 345
Cdd:TIGR02238 240 FVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
92-345 |
7.41e-171 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 475.25 E-value: 7.41e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 92 SGFITAHQLVHKRSKVLKITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTE 171
Cdd:pfam08423 1 MGFTTATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 172 GTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQ 251
Cdd:pfam08423 81 GTFRPERLVAIAERYGLDPEDVLDNVAYARAYNSEHQMQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELAERQQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 252 KLNKTMSILSKLGEQFNIAVLITNQVMSDP-GATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPE 330
Cdd:pfam08423 161 HLAKFLRTLQRLADEFGVAVVITNQVVAQVdGAAGMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPE 240
|
250
....*....|....*
gi 156097941 331 VDCIFQLSDGGVIDA 345
Cdd:pfam08423 241 SEAVFAIGSGGIIDP 255
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
1-347 |
9.06e-171 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 478.50 E-value: 9.06e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 1 MATLPSSKSTskVAATTEMEEEVTKEHQFQEIEKLQDLGINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEK 80
Cdd:PLN03187 2 SASAQADEGA--QLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 81 ILEVASKIENcSGFITAHQLVHKRSKVLKITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGG 160
Cdd:PLN03187 80 ICEAAEKLLN-QGFITGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 161 GNGKVCYIDTEGTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDF 240
Cdd:PLN03187 159 GNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 241 SGRGELSERQQKLNKTMSILSKLGEQFNIAVLITNQVMSDPGAtMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVC 320
Cdd:PLN03187 239 TGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGG-GMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVC 317
|
330 340
....*....|....*....|....*..
gi 156097941 321 KVYDAPNLPEVDCIFQLSDGGVIDATD 347
Cdd:PLN03187 318 KVFDAPNLPEAEAEFQITSGGIMDAKD 344
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
110-344 |
3.01e-168 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 467.99 E-value: 3.01e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGID 189
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIAERFGVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEP-FALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFN 268
Cdd:cd19514 81 HDAVLDNILYARAYTSEHQMELLDYVAAKFHEEAvFRLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 156097941 269 IAVLITNQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVID 344
Cdd:cd19514 161 VAVFITNQVTADPGAAMTFQADPKKPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAITAGGIAD 236
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
32-347 |
2.04e-154 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 436.08 E-value: 2.04e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 32 IEKLQDLGINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIENcSGFITAHQLVHKRSKVLKIT 111
Cdd:TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVP-MGFTTATEFHQRRQEVIQLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 112 TGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGE 191
Cdd:TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 192 DVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNIAV 271
Cdd:TIGR02239 160 DVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156097941 272 LITNQVMSDP-GATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVIDATD 347
Cdd:TIGR02239 240 VITNQVVAQVdGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
12-347 |
1.03e-153 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 435.32 E-value: 1.03e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 12 KVAATTEMEEEVTKEHQFQEIEKLQDLGINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIENC 91
Cdd:PLN03186 8 AAAQAMQEEEEEEAAHGPFPIEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 92 sGFITAHQLVHKRSKVLKITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTE 171
Cdd:PLN03186 88 -GFTTASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 172 GTFRPEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQ 251
Cdd:PLN03186 167 GTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQM 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 252 KLNKTMSILSKLGEQFNIAVLITNQVMSDPGAtMTFIANP-MKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPE 330
Cdd:PLN03186 247 HLGKFLRSLQRLADEFGVAVVITNQVVAQVDG-SAFFAGPqLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPE 325
|
330
....*....|....*..
gi 156097941 331 VDCIFQLSDGGVIDATD 347
Cdd:PLN03186 326 AEARFSISSEGVTDVKD 342
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
31-345 |
1.12e-134 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 386.16 E-value: 1.12e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 31 EIEKLQDL-GINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIENCSGFITAHQLVHKRSKVLK 109
Cdd:PRK04301 4 KEKDLEDLpGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKNVGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGID 189
Cdd:PRK04301 84 ITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAFTHEHlyQLLAV-SAAKMCEE--PFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQ 266
Cdd:PRK04301 164 PDEVLDNIHVARAYNSDH--QMLLAeKAEELIKEgeNIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156097941 267 FNIAVLITNQVMSDPGAtmtFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVIDA 345
Cdd:PRK04301 242 YNAAVVVTNQVMARPDA---FFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRDA 317
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
110-344 |
5.92e-132 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 375.89 E-value: 5.92e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGID 189
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNI 269
Cdd:cd19513 81 GEDVLDNVAYARAYNTDHQMQLLIQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156097941 270 AVLITNQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVID 344
Cdd:cd19513 161 AVVITNQVVAQVDGAAMFAGDPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
110-342 |
1.29e-129 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 369.94 E-value: 1.29e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGID 189
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNI 269
Cdd:cd01123 81 PDDVLDNVAYARAFNSDHQTQLLDQAAAMMVESRFKLLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156097941 270 AVLITNQVMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGV 342
Cdd:cd01123 161 AVVVTNQVVAQVDGAMMFAADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADGV 233
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
35-344 |
2.33e-125 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 362.14 E-value: 2.33e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 35 LQDL-GINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASKIENCSGFITAHQLVHKRSKVLKITTG 113
Cdd:TIGR02236 1 LEDLpGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKTIGKITTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 114 SSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGEDV 193
Cdd:TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 194 LDNILYARAFTHEHlyQLL----AVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNI 269
Cdd:TIGR02236 161 LKNIYVARAYNSNH--QMLlvekAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNA 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156097941 270 AVLITNQVMSDPGAtmtFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVID 344
Cdd:TIGR02236 239 AVVVTNQVMARPDA---FFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
110-344 |
4.52e-107 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 312.76 E-value: 4.52e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAERYGID 189
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAFTHEHlyQLLAV-SAAKMCEE--PFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQ 266
Cdd:cd19515 81 PDEVLDNIYVARAYNSNH--QMLLVeKAEDLIKEgnNIKLLIVDSLTSHFRAEYVGRGTLAERQQKLNKHLHDLHRLADL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 156097941 267 FNIAVLITNQVMSDPGAtmtFIANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVDCIFQLSDGGVID 344
Cdd:cd19515 159 YNIAVLVTNQVMAKPDA---FFGDPTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
109-344 |
3.16e-44 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 151.55 E-value: 3.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 109 KITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLprsvggGNGKVCYIDTEGtFRPEKICKIAeryGI 188
Cdd:PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYIDTEG-LSPERFKQIA---GE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 189 DGEDVLDNILYARAFTHEHlyQLLAV-SAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQF 267
Cdd:PRK09361 74 DFEELLSNIIIFEPSSFEE--QSEAIrKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKH 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 156097941 268 NIAVLITNQVMSDPGatmtfiANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPEVD-CIFQLSDGGVID 344
Cdd:PRK09361 152 DLAVVITNQVYSDID------SDGLRPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGEsAEFRITDRGIEI 223
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
110-343 |
1.88e-43 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 149.39 E-value: 1.88e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVsaqlprSVGGGNGKVCYIDTEGtFRPEKICKIAeryGID 189
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAV------EAAKQGKKVVYIDTEG-LSPERFQQIA---GER 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 GEDVLDNILYARAftHEHLYQLLAV-SAAKMC-EEPFALLVVDSIISLFRVDfsgRGELSERQQKLNKTMSILSKLGEQF 267
Cdd:cd01394 71 FESIASNIIVFEP--YSFDEQGVAIqEAEKLLkSDKVDLVVVDSATALYRLE---LGDDSEANRELSRQMSKLLSIARKY 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156097941 268 NIAVLITNQVMSDPGATMTfianpmKPVGGHVIGHASTTRLSLRKGKGDQRVCKVYDAPNLPE-VDCIFQLSDGGVI 343
Cdd:cd01394 146 DIPVVITNQVYSDIDDDRL------KPVGGTLLEHWSKAIIRLEKSPPGLRRATLEKHRSRPEgQSAGFRITDRGIR 216
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
129-312 |
5.45e-43 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 147.11 E-value: 5.45e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 129 SITELFGENRCGKTQICHTLAVSAQLprsvggGNGKVCYIDTEGTFRPEKICKIAERY---GIDGEDVLDNILYARAFTH 205
Cdd:cd01393 2 KITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILEASpssELELAEALSRLLYFRPPDT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 206 EHLYQLLAVSAAKMCEEP-FALLVVDSIISLFRVDF----SGRGELSERQQKLNKTMSILSKLGEQFNIAVLITNQVMSD 280
Cdd:cd01393 76 LAHLLALDSLPESLFPPPnTSLVVVDSVSALFRKAFprggDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTK 155
|
170 180 190
....*....|....*....|....*....|..
gi 156097941 281 PGATMTfiANPMKPVGGHVIGHASTTRLSLRK 312
Cdd:cd01393 156 IRGGSG--ASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
117-312 |
4.47e-39 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 138.96 E-value: 4.47e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 117 LDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFrPEK-----ICKIAERYG-IDG 190
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSF-PSKrlqqlASSLPKRYHlEKA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 191 EDVLDNILYARAFTHEHL-----YQLlavsAAKMCEEPFALLVVDSIISLFRVDF-SGRGELSERQQKLNKTMSILSKLG 264
Cdd:cd19491 80 KNFLDNIFVEHVADLETLehclnYQL----PALLERGPIRLVVIDSIAALFRSEFdTSRSDLVERAKYLRRLADHLKRLA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156097941 265 EQFNIAVLITNQVMSDPGA-----------TMTFIA--------NPMKPVGGHVIGHASTTRLSLRK 312
Cdd:cd19491 156 DKYNLAVVVVNQVTDRFDSssdasglgvldYLSQFSsfsggvsgNRKVPALGLTWANLVNTRLMLSR 222
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
118-318 |
1.81e-35 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 128.59 E-value: 1.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 118 DKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFRPEKICKIAER-----------Y 186
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAEArfpeafsgfmeE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 187 GIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSG-RGELSERQQKLNKTMSILSKLGE 265
Cdd:cd19493 81 NERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSSGVRLVVIDSIAALVRREFGGsDGEVTERHNALAREASSLKRLAE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 156097941 266 QFNIAVLITNQVMSDPGATMTFIANpMKPVGGHVIGHASTTRLSLRKGKGDQR 318
Cdd:cd19493 161 EFRIAVLVTNQATTHFGDAGDGSSG-VTAALGDAWAHAVNTRLRLERCLLQLR 212
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
117-342 |
1.48e-33 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 123.30 E-value: 1.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 117 LDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQlprsvgGGNGKVCYIDTEGtFRPEKICKIAERygiDGEDVLDN 196
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED---RPERALSN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 197 ILYARAFTHEHlyQLLAVS-AAKMCE-EPFALLVVDSIISLFRVDFSgrGELSERQQKLNKTMSILSKLGEQFNIAVLIT 274
Cdd:TIGR02237 71 FIVFEVFDFDE--QGVAIQkTSKFIDrDSASLVVVDSFTALYRLELS--DDRISRNRELARQLTLLLSLARKKNLAVVIT 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156097941 275 NQVMSDPGatmtfiANPMKPVGGHVIGHASTTRLSLRKGKGDQRVCkVYDAPNLPE-VDCIFQLSDGGV 342
Cdd:TIGR02237 147 NQVYTDVN------NGTLRPLGGHLLEHWSKVILRLEKFRGRRLAT-LEKHRSRPEgESVYFRITDDGI 208
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
128-326 |
1.86e-28 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 108.47 E-value: 1.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 128 MSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFrpekickiaerygidgedvldNILYARAFTHEH 207
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF---------------------NIHYFRVHDYVE 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 208 LYQLLAVSAAKMCEEP-FALLVVDSIISLFRVDFSGrgeLSERQQKLNKTMSILSKLGEQFNIAVLITNQVMS--DPGAT 284
Cdd:cd19492 60 LLALINSLPKFLEDHPkVKLIVVDSIAFPFRHDFDD---LAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTkiSEDGQ 136
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 156097941 285 MTFIanpmkPVGGHVIGHASTTRLSLRKgKGDQRVCKVYDAP 326
Cdd:cd19492 137 SQLV-----PALGESWSHACTTRLFLTW-DEKQRFAHLYKSP 172
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
103-319 |
9.84e-26 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 105.64 E-value: 9.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 103 KRSKVLKITTGSSTLDKTLG-GGIESMSITELFGENRCGKTQICHTLAVSAQLprsvggGNGKVCYIDTEGTFRPEKick 181
Cdd:COG0468 37 ARQDVEVISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------AGGIAAFIDAEHALDPEY--- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 182 iAERYGIDgedvLDNILYARAFTHEHlyqllAVSAAKM--CEEPFALLVVDSIISLFRvdfsgR----GELSE-----RQ 250
Cdd:COG0468 108 -AKKLGVD----IDNLLVSQPDTGEQ-----ALEIAETlvRSGAVDLIVVDSVAALVP-----KaeieGEMGDshvglQA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156097941 251 QKLNKTMSILSKLGEQFNIAVLITNQVMSDPGatMTFiANPMKPVGGHVIGHASTTRLSLRKG----KGDQRV 319
Cdd:COG0468 173 RLMSQALRKLTGAISKSNTTVIFINQLREKIG--VMF-GNPETTTGGNALKFYASVRLDIRRIgtikDGDEVI 242
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
122-312 |
1.26e-21 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 91.16 E-value: 1.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 122 GGGIESMSITELFGENRCGKTQICHTLAVSAqlprsVGGGNGKVCYIDTEGTFRPEKICKIAERYGIDGED---VLDNIL 198
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANV-----ASRSGQNVLYIDTKSSFSARRLAQILKSRAQDAEEidkALQRIR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 199 YARAFTHEHLYQLLAVSAAKMCEE------PFALLVVDSIISLFRVDFSGrGELSERQQKLNKTMSILSKLGEQFNIAVL 272
Cdd:cd19489 76 VVRVFDPYELLDLLEELRNTLSQQqenlysRLKLVIIDSLSALISPLLGG-SKHSEGHALLASLARLLKKLAAEYQIAVL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 156097941 273 ITNQVMSDPGATMTFIanpMKPVGGHVIGHASTTRLSLRK 312
Cdd:cd19489 155 VTNLTVRGGDGGQQGS---TKPALGEYWESVPSTRLLLSR 191
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
130-312 |
4.67e-12 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 64.68 E-value: 4.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 130 ITELFGENRCGKTQICHTLAVSAQLPRS-----VGGGNGKVCYIDTEGTFRPEKICKIAERY----------GIDGEDV- 193
Cdd:cd19490 3 VIEITGPSGSGKTELLYHLAARCILPSSwggvpLGGLEAAVVFIDTDGRFDILRLRSILEARiraaiqaansSDDEEDVe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 194 ------LDNILYARAFTHEH----LYQLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQKLN----KTMSI 259
Cdd:cd19490 83 eiarecLQRLHIFRCHSSLQllatLLSLENYLLSLSANPELGLLLIDSISAFYWQDRFSAELARAAPLLQEaalrAILRE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 156097941 260 LSKLGEQFNIAVLITNQ-----------VMSDPGATMTFIANPMKPVGGHVIGHASTTRLSLRK 312
Cdd:cd19490 163 LRRLRRRFQLVVIATKQalfpgksastdNPAANNAVSKASAPSHREYLPRPWQRLVTHRLVLSR 226
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
110-313 |
7.69e-10 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 58.34 E-value: 7.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLG-GGIESMSITELFGENRCGKTqichTLAVSAQLPRSVGGGNgkVCYIDTEGTFRPEkickIAERYGI 188
Cdd:cd00983 5 IPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKT----TLALHAIAEAQKLGGT--AAFIDAEHALDPE----YAKKLGV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 189 DgedvLDNILYARAFTHEHLYQL---LAVSAAkmceepFALLVVDSIISLF-RVDFSgrGELSERQ---------QKLNK 255
Cdd:cd00983 75 D----IDNLLVSQPDTGEQALEIadtLIRSGA------VDLIVVDSVAALVpKAEIE--GEMGDSHvglqarlmsQALRK 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 156097941 256 TMSILSKLgeqfNIAVLITNQVMSDPGatmTFIANPMKPVGGHVIGHASTTRLSLRKG 313
Cdd:cd00983 143 LTGSLSKS----KTTVIFINQLREKIG---VMFGNPETTTGGNALKFYASVRLDIRRI 193
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
80-312 |
8.89e-08 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 52.40 E-value: 8.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 80 KILEVA-SKIENCSGFITAHQLV-HKRSKVLKITTGSSTLDKTLG-GGIESMSITELFGENRCGKTQIchTLAVSAQLPR 156
Cdd:pfam00154 1 KALEAAlKQIEKQFGKGSIMKLGdEKKLDVETISTGSLALDIALGiGGYPKGRIIEIYGPESSGKTTL--ALHAIAEAQK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 157 svgggNGKVC-YIDTEGTFRPekicKIAERYGIDgedvLDNILYARAFTHEhlyQLLAVSAAKMCEEPFALLVVDSIISL 235
Cdd:pfam00154 79 -----AGGTAaFIDAEHALDP----VYAKKLGVD----IDNLLVSQPDTGE---QALEIADMLVRSGAIDLIVVDSVAAL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 236 F-RVDFSgrGELSERQ---------QKLNKTMSILSKLgeqfNIAVLITNQVMSDPGatMTFiANPMKPVGGHVIGHAST 305
Cdd:pfam00154 143 VpKAEIE--GEMGDSHvglqarlmsQALRKLTGSISKS----NTTVIFINQIREKIG--VMF-GNPETTTGGRALKFYAS 213
|
....*..
gi 156097941 306 TRLSLRK 312
Cdd:pfam00154 214 VRLDIRR 220
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
109-276 |
2.50e-06 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 47.60 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 109 KITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSaqlprsvGGGNG-KVCYIDTEgtFRPEKICKIAERYG 187
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAE-------GLRRGeKGLYVSFE--ESPEQLLRRAESLG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 188 IDGEDVLDN--ILYARAFTH-------EHLYQLLAVSAakmcEEPFALLVVDSiISLFRvdfsgrgELSERQQKLNKTMS 258
Cdd:COG0467 72 LDLEEYIESglLRIIDLSPEelgldleELLARLREAVE----EFGAKRVVIDS-LSGLL-------LALPDPERLREFLH 139
|
170
....*....|....*...
gi 156097941 259 ILSKLGEQFNIAVLITNQ 276
Cdd:COG0467 140 RLLRYLKKRGVTTLLTSE 157
|
|
| HHH_5 |
pfam14520 |
Helix-hairpin-helix domain; |
32-87 |
8.97e-05 |
|
Helix-hairpin-helix domain;
Pssm-ID: 434010 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 8.97e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 156097941 32 IEKLQDL-GINAADINKLKGSGYCTILSLIQTTKKELCNVKGISEAKVEKILEVASK 87
Cdd:pfam14520 1 FEELLSIsGIGPKTALALLSAGIGTVEDLAEADVDELAEIPGIGEKTAQRIILELRD 57
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
110-289 |
4.67e-04 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 41.10 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 110 ITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLAVsAQLPRsvgggNGKVCYIDTEGTfrPEKICKIAERYGID 189
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLY-AGAKN-----GEPGLFFTFEES--PERLLRNAKSFGWD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 190 ---GEDVlDNILYARAFTHEHLY----QLLAVSAAKMCEEPFALLVVDSIISLFRvdfsgrgeLSERQQKLNKTMSILSK 262
Cdd:cd01124 73 fdeMEDE-GKLIIVDAPPTEAGRfsldELLSRILSIIKSFKAKRVVIDSLSGLRR--------AKEDQMRARRIVIALLN 143
|
170 180 190
....*....|....*....|....*....|...
gi 156097941 263 LGEQFNIAVLITNQVMSD------PGATMTFIA 289
Cdd:cd01124 144 ELRAAGVTTIFTSEMRSFlssesaGGGDVSFIV 176
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
109-242 |
6.32e-04 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 40.98 E-value: 6.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 109 KITTGSSTLDKTLGGGIESMSITELFGENRCGKTqichTLA--VSAQLPRSvgggNGKVCYIDTEGTfrPEKICKIAERY 186
Cdd:cd01121 63 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKS----TLLlqVAARLAQR----GGKVLYVSGEES--LSQIKLRAERL 132
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156097941 187 GIDGEDV-------LDNILyarafthehlyqllavsaAKMCEEPFALLVVDSIISLFRVDFSG 242
Cdd:cd01121 133 GLGSDNLyllaetnLEAIL------------------AEIEELKPSLVVIDSIQTVYSPELTS 177
|
|
| PRK08533 |
PRK08533 |
flagellar accessory protein FlaH; Reviewed |
106-155 |
3.11e-03 |
|
flagellar accessory protein FlaH; Reviewed
Pssm-ID: 181459 Cd Length: 230 Bit Score: 38.51 E-value: 3.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156097941 106 KVLKITTGSSTLDKTLGGGIESMSITELFGENRCGKTQICHTLA------------VSAQLP 155
Cdd:PRK08533 2 ELAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAygflqngysvsyVSTQLT 63
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
130-282 |
3.69e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 37.35 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156097941 130 ITELFGENRCGKTQICHTLAvsaqlpRSVGGGNGKVCYIDTEGTFRPEKickiaerygidgeDVLDNILYARAFTHEHLY 209
Cdd:smart00382 4 VILIVGPPGSGKTTLARALA------RELGPPGGGVIYIDGEDILEEVL-------------DQLLLIIVGGKKASGSGE 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156097941 210 QLLAVSAAKMCEEPFALLVVDSIISLFRVDFSGRGELSERQQklnktmsILSKLGEQFNIAVLITNQVMSDPG 282
Cdd:smart00382 65 LRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR-------LLLLLKSEKNLTVILTTNDEKDLG 130
|
|
| |
