NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|195168778|ref|XP_002025207|]
View 

protein SPT2 homolog [Drosophila persimilis]

Protein Classification

SPT2 domain-containing protein( domain architecture ID 10549523)

SPT2 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SPT2 pfam08243
SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which ...
 516-592 5.48e-13

SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation.


:

Pssm-ID: 462407  Cd Length: 106  Bit Score: 65.41  E-value: 5.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195168778  516 FIDDGECEED--ISSHIRDIFGYDKRRYRDLDDDDS-----EMESSFAQMQREEFLSGKMGLQEDLEDMRMEAIHKKRKI 588
Cdd:pfam08243  23 IADDEEEEEEeyDRDEIWAIFNKGKKYYYSRDDDDSddddrDMEANFAEIQKEERRSARIARLEDREEEERERREEKRKK 102


                  ....
gi 195168778  589 ARRK 592
Cdd:pfam08243 103 RRKK 106
 
Name Accession Description Interval E-value
SPT2 pfam08243
SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which ...
 516-592 5.48e-13

SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation.


Pssm-ID: 462407  Cd Length: 106  Bit Score: 65.41  E-value: 5.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195168778  516 FIDDGECEED--ISSHIRDIFGYDKRRYRDLDDDDS-----EMESSFAQMQREEFLSGKMGLQEDLEDMRMEAIHKKRKI 588
Cdd:pfam08243  23 IADDEEEEEEeyDRDEIWAIFNKGKKYYYSRDDDDSddddrDMEANFAEIQKEERRSARIARLEDREEEERERREEKRKK 102


                  ....
gi 195168778  589 ARRK 592
Cdd:pfam08243 103 RRKK 106
SPT2 smart00784
SPT2 chromatin protein; This entry includes the Saccharomyces cerevisiae protein SPT2 which is ...
 491-593 2.31e-07

SPT2 chromatin protein; This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation.


Pssm-ID: 214818 [Multi-domain]  Cd Length: 106  Bit Score: 49.30  E-value: 2.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195168778   491 KPQQKSPTKRRIDDEDDDYDSELDDFIDDGECEEDISSHIRDIFGYDKRRYRDLDDDDSE--MESSFAQMQREEFLSGKM 568
Cdd:smart00784   2 SPRLERSRRSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDddMEAGGADIQEEERRSARL 81

                           90       100
                   ....*....|....*....|....*
gi 195168778   569 GLQEDLEDMRMEAIHKKRKIARRKA 593
Cdd:smart00784  82 ARLEDREEERLEKEEEREKRARKRK 106
 
Name Accession Description Interval E-value
SPT2 pfam08243
SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which ...
 516-592 5.48e-13

SPT2 chromatin protein; This family includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation.


Pssm-ID: 462407  Cd Length: 106  Bit Score: 65.41  E-value: 5.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195168778  516 FIDDGECEED--ISSHIRDIFGYDKRRYRDLDDDDS-----EMESSFAQMQREEFLSGKMGLQEDLEDMRMEAIHKKRKI 588
Cdd:pfam08243  23 IADDEEEEEEeyDRDEIWAIFNKGKKYYYSRDDDDSddddrDMEANFAEIQKEERRSARIARLEDREEEERERREEKRKK 102


                  ....
gi 195168778  589 ARRK 592
Cdd:pfam08243 103 RRKK 106
SPT2 smart00784
SPT2 chromatin protein; This entry includes the Saccharomyces cerevisiae protein SPT2 which is ...
 491-593 2.31e-07

SPT2 chromatin protein; This entry includes the Saccharomyces cerevisiae protein SPT2 which is a chromatin protein involved in transcriptional regulation.


Pssm-ID: 214818 [Multi-domain]  Cd Length: 106  Bit Score: 49.30  E-value: 2.31e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 195168778   491 KPQQKSPTKRRIDDEDDDYDSELDDFIDDGECEEDISSHIRDIFGYDKRRYRDLDDDDSE--MESSFAQMQREEFLSGKM 568
Cdd:smart00784   2 SPRLERSRRSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDddMEAGGADIQEEERRSARL 81

                           90       100
                   ....*....|....*....|....*
gi 195168778   569 GLQEDLEDMRMEAIHKKRKIARRKA 593
Cdd:smart00784  82 ARLEDREEERLEKEEEREKRARKRK 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH