|
Name |
Accession |
Description |
Interval |
E-value |
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
520-753 |
2.64e-108 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 333.70 E-value: 2.64e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYpgttklgcckctKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03263 1 LQIRNLTKTY------------KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SvgMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:cd03263 69 D--RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAI 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLK 753
Cdd:cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
520-756 |
5.22e-79 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 256.53 E-value: 5.22e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:COG1131 1 IEVRGLTKRYGD--------------KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVAR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SVgmSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:COG1131 67 DP--AEVRRRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKSRF 756
Cdd:COG1131 145 ALLHDPELLILDEPTSGLDPEARRELWELLRElAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
546-847 |
1.84e-73 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 244.22 E-value: 1.84e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVgmSNIRKMIGVCPQFDILWDALSS 625
Cdd:TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVDEDLTG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 706 WDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKSRFGTGFITTVSFPENKKDSARSTSPEPLKR 784
Cdd:TIGR01188 164 WDYIRALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIAELGE 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 785 FFKEHLKVEPTEESKAFMTfvipHDKEQLLTGFFAELQDRESEfgISDIQLGLATLEEVFLNI 847
Cdd:TIGR01188 244 TGLGLLAVTVDSDRIKILV----PDGDETVPEIVEAAIRNGIR--IRSISTERPSLDDVFLKL 300
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
232-861 |
8.13e-70 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 254.55 E-value: 8.13e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 232 PVFFLAFSMFGFVLQLGSVVTEKELKLREAMTTMGVYDSAYWLSWLLWEGILTFVSSLFLVLFGM----------MFQFD 301
Cdd:TIGR01257 656 PIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMhgrilhysdpFILFL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 302 FFLKNSFVLvfllfflfqfnmIGLAFALSSIISKSSSATTVGFLVFLVGFITQIVTatgFPYSSSYSIGSRVIWSLFPPN 381
Cdd:TIGR01257 736 FLLAFSTAT------------IMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPV 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 382 TFSAGLQLLLEATSSpgDSGISWSE--RAICAGGESTCIITTNKIYIwlvgTFFFWFVLALYFDNIIPNASGVRKSIFYF 459
Cdd:TIGR01257 801 AFGFGTEYLVRFEEQ--GLGLQWSNigNSPLEGDEFSFLLSMKMMLL----DAALYGLLAWYLDQVFPGDYGTPLPWYFL 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 460 LKPSYWTGKEGNKVEEGSicscigSVPHVEHITPEDEDVLEEEilvkqqamdGIVDPNIAVQIHGLAktyPGTTKLGCCK 539
Cdd:TIGR01257 875 LQESYWLGGEGCSTREER------ALEKTEPLTEEMEDPEHPE---------GINDSFFERELPGLV---PGVCVKNLVK 936
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 540 CTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvgMSNIRKMIGVCPQFDIL 619
Cdd:TIGR01257 937 IFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN--LDAVRQSLGMCPQHNIL 1014
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP 699
Cdd:TIGR01257 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 700 ITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKSRFGTGFITTVSFPENKKDSAR---- 775
Cdd:TIGR01257 1095 YSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRggce 1174
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 776 -----------STSPEPLKRFFKEH-----------LKVEPTEESKAF------MTFVIPHD--KEQLLTGFFAELQDRE 825
Cdd:TIGR01257 1175 gtcsctskgfsTRCPARVDEITPEQvldgdvnelmdLVYHHVPEAKLVecigqeLIFLLPNKnfKQRAYASLFRELEETL 1254
|
650 660 670
....*....|....*....|....*....|....*.
gi 297797133 826 SEFGISDIQLGLATLEEVFLNIARRAELESATVEGT 861
Cdd:TIGR01257 1255 ADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGA 1290
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
546-753 |
2.12e-68 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 227.25 E-value: 2.12e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGmsNIRKMIGVCPQFDILWDALSS 625
Cdd:cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR--EVRRRIGIVFQDLSVDDELTG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 297797133 706 WDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLK 753
Cdd:cd03265 171 WEYIEKLKEefGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
486-850 |
4.54e-67 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 246.46 E-value: 4.54e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 486 PHVEHITPEDEDVLEEeilvKQQAMDGIVDPNIaVQIHGLAKTYPGTTklgcckctktSPfhAVKGLWLNIAKDQLFCLL 565
Cdd:TIGR01257 1909 PAKEPIFDEDDDVAEE----RQRIISGGNKTDI-LRLNELTKVYSGTS----------SP--AVDRLCVGVRPGECFGLL 1971
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 566 GPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVgmSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKS 645
Cdd:TIGR01257 1972 GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI--SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK 2049
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 646 IAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHS 724
Cdd:TIGR01257 2050 VANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSiIREGRAVVLTSHS 2129
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 725 MEEADILGDRIGIMAKGRLRCIGTSIRLKSRFGTGFITTVSFPENKKDSARSTSpePLKRFFKEHLKVEPTEESK-AFMT 803
Cdd:TIGR01257 2130 MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLN--PVEQFFQGNFPGSVQRERHyNMLQ 2207
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 297797133 804 FVIPHDKeqlLTGFFAELQDRESEFGISDIQLGLATLEEVFLNIARR 850
Cdd:TIGR01257 2208 FQVSSSS---LARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQ 2251
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
520-743 |
6.80e-58 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 196.46 E-value: 6.80e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03230 1 IEVRNLSKRYGK--------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SVgmSNIRKMIGVCPQFDILWDALSSEEHLHlfasikglppasiksiavklladvklieaakiragsYSGGMKRRLSVAI 679
Cdd:cd03230 67 EP--EEVKRRIGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQ 108
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRElKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
521-757 |
4.83e-51 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 179.67 E-value: 4.83e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSS 600
Cdd:COG4555 3 EVENLSKKYGK--------------VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 VGMsnIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIA 680
Cdd:COG4555 69 PRE--ARRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 681 LIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:COG4555 147 LVHDPKVLLLDEPTNGLDVMARRLLREILRALKKeGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
520-744 |
9.84e-47 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 166.21 E-value: 9.84e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAkDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03264 1 LQLENLTKRYGKK--------------RALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SvgMSNIRKMIGVCPQfDILWDA-LSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVA 678
Cdd:cd03264 66 Q--PQKLRRRIGYLPQ-EFGVYPnFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 679 IALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLR 744
Cdd:cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
520-744 |
1.24e-44 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 160.08 E-value: 1.24e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrs 599
Cdd:cd03268 1 LKTNDLTKTYGKKR--------------VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 sVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIavklLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:cd03268 65 -QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----LDVVGLKDSAKKKVKGFSLGMKQRLGIAL 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ-ESKKGRAIILTTHSMEEADILGDRIGIMAKGRLR 744
Cdd:cd03268 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILsLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
549-742 |
1.05e-41 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 155.35 E-value: 1.05e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRkmIGVCPQFDILWDALSSEEH 628
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR--VGVVPQFDNLDPDFTVREN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 629 LHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDI 708
Cdd:PRK13537 101 LLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER 180
|
170 180 190
....*....|....*....|....*....|....*
gi 297797133 709 IQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK13537 181 LRSlLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
495-742 |
1.69e-41 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 155.76 E-value: 1.69e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 495 DEDVLEEEILVKQQAMDGIVD--PNIAVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGK 572
Cdd:PRK13536 15 ELSPIERKHQGISEAKASIPGsmSTVAIDLAGVSKSYGDKA--------------VVNGLSFTVASGECFGLLGPNGAGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 573 TTTISCLTGINPVTGGDAIIYGNSIRSSVGMSniRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLA 652
Cdd:PRK13536 81 STIARMILGMTSPDAGKITVLGVPVPARARLA--RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 653 DVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADIL 731
Cdd:PRK13536 159 FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERL 238
|
250
....*....|.
gi 297797133 732 GDRIGIMAKGR 742
Cdd:PRK13536 239 CDRLCVLEAGR 249
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
540-747 |
9.00e-41 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 149.44 E-value: 9.00e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 540 CTKT-----SPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGnsIRSSVGMSNIRKMIGVCP 614
Cdd:cd03266 7 LTKRfrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG--FDVVKEPAEARRRLGFVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 615 QFDILWDALSSEEHLHLFASIKGLPPASIKSiAVKLLADVKLIEA-AKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEP 693
Cdd:cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLGMEElLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 694 TTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03266 164 TTGLDVMATRALREFIRQLRAlGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
520-747 |
8.11e-39 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 143.58 E-value: 8.11e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03269 1 LEVENVTKRFGRVT--------------ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SvgmsnIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:cd03269 67 A-----ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELArAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
519-852 |
1.86e-37 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 142.55 E-value: 1.86e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYpGTtklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR 598
Cdd:COG4152 1 MLELKGLTKRF-GD-------------KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVgmsniRKMIGVCPqfdilwdalssEE-----------HLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSY 667
Cdd:COG4152 67 PED-----RRRIGYLP-----------EErglypkmkvgeQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEEL 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCI 746
Cdd:COG4152 131 SKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRElAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLS 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 747 GTSIRLKSRFGTGFItTVSFPENKKdsarstspeplkrFFKEHLKVEPTEESKAFMTFVIPH--DKEQLLtgffAELQDR 824
Cdd:COG4152 211 GSVDEIRRQFGRNTL-RLEADGDAG-------------WLRALPGVTVVEEDGDGAELKLEDgaDAQELL----RALLAR 272
|
330 340
....*....|....*....|....*...
gi 297797133 825 eseFGISDIQLGLATLEEVFLNIARRAE 852
Cdd:COG4152 273 ---GPVREFEEVRPSLNEIFIEVVGEKA 297
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
520-743 |
4.25e-37 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 139.18 E-value: 4.25e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-- 597
Cdd:cd03257 2 LEVKNLSVSFP----------TGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlk 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIRKMIGVCPQfdilwDALSS-------EEHL-HLFASIKGLPPASIKSIAVKLLAdvKLIEAAKIRAGSY-- 667
Cdd:cd03257 72 LSRRLRKIRRKEIQMVFQ-----DPMSSlnprmtiGEQIaEPLRIHGKLSKKEARKEAVLLLL--VGVGLPEEVLNRYph 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 --SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03257 145 elSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKlqEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
520-746 |
3.95e-36 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 136.06 E-value: 3.95e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttklgcckctKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03293 1 LEVRNVSKTYGG----------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 svgmsnIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:cd03293 71 ------PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALAR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRH----VWDIIQESKKgrAIILTTHSMEEADILGDRIGIMAK--GRLRCI 746
Cdd:cd03293 145 ALAVDPDVLLLDEPFSALDALTREQlqeeLLDIWRETGK--TVLLVTHDIDEAVFLADRVVVLSArpGRIVAE 215
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
547-744 |
6.04e-36 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 135.99 E-value: 6.04e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSIRSSVGMSNIRKMIGVCPqfdiLWDALSSE 626
Cdd:TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE-IIFDGHPWTRKDLHKIGSLIESPP----LYENLTAR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 EHLHLFASIKGLPPASIKSIavklLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:TIGR03740 89 ENLKVHTTLLGLPDSRIDEV----LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164
|
170 180 190
....*....|....*....|....*....|....*....
gi 297797133 707 DIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLR 744
Cdd:TIGR03740 165 ELIRSfPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
521-742 |
6.34e-36 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 133.14 E-value: 6.34e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSS 600
Cdd:cd00267 1 EIENLSFRYGGRT--------------ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 VGMSNIRKMIGVCPQFdilwdalsseehlhlfasikglppasiksiavklladvklieaakiragsySGGMKRRLSVAIA 680
Cdd:cd00267 66 LPLEELRRRIGYVPQL---------------------------------------------------SGGQRQRVALARA 94
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 681 LIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRElAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
520-743 |
9.66e-36 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 134.92 E-value: 9.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktsPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR- 598
Cdd:cd03255 1 IELKNLSKTYGGGGE----------KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISk 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 -SSVGMSNIR-KMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLS 676
Cdd:cd03255 71 lSEKELAAFRrRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 677 VAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADiLGDRIGIMAKGRL 743
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
516-744 |
1.05e-35 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 136.37 E-value: 1.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 516 PNIAVQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN 595
Cdd:COG1116 4 AAPALELRGVSKRFP----------TGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIRSsvgmsnIRKMIGVCPQFDIL--WdaLSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKR 673
Cdd:COG1116 74 PVTG------PGPDRGVVFQEPALlpW--LTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAK--GRLR 744
Cdd:COG1116 146 RVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIV 220
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
520-748 |
1.30e-35 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 135.15 E-value: 1.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:COG1122 1 IELENLSFSYPGGTP-------------ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SvGMSNIRKMIGVCPQF------------DIlwdALSSEEHlhlfasikGLPPASIKSIAVKLLADVKLIEAAKIRAGSY 667
Cdd:COG1122 68 K-NLRELRRKVGLVFQNpddqlfaptveeDV---AFGPENL--------GLPREEIRERVEEALELVGLEHLADRPPHEL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCI 746
Cdd:COG1122 136 SGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
..
gi 297797133 747 GT 748
Cdd:COG1122 216 GT 217
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
521-742 |
5.87e-34 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 129.51 E-value: 5.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSS 600
Cdd:cd03225 1 ELKNLSFSYPDGARP------------ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 vGMSNIRKMIGVCPQF------------DILWDAlsseEHLhlfasikGLPPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:cd03225 69 -SLKELRRKVGLVFQNpddqffgptveeEVAFGL----ENL-------GLPEEEIEERVEEALELVGLEGLRDRSPFTLS 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAeGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
520-748 |
7.03e-34 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 130.31 E-value: 7.03e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLgcckctktspfhavKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR- 598
Cdd:cd03261 1 IELRGLTKSFGGRTVL--------------KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISg 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 -SSVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKG-LPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLS 676
Cdd:cd03261 67 lSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTrLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 677 VAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
550-748 |
1.45e-33 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 129.33 E-value: 1.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRKMIGVCPQFDILWDALSSEE 627
Cdd:COG1127 22 DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglSEKELYELRRRIGMLFQGGALFDSLTVFE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 --------HLHLfasikglPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP 699
Cdd:COG1127 102 nvafplreHTDL-------SEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDP 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 297797133 700 ITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:COG1127 175 ITSAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
519-748 |
3.79e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 135.03 E-value: 3.79e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTKlgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTG---GDAIIYGN 595
Cdd:COG1123 4 LLEVRDLSVRYPGGDV------------PAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIRSSvGMSNIRKMIGVCPQfdilwDALSS------EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSG 669
Cdd:COG1123 72 DLLEL-SEALRGRRIGMVFQ-----DPMTQlnpvtvGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 670 GMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:COG1123 146 GQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRElqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDG 225
|
.
gi 297797133 748 T 748
Cdd:COG1123 226 P 226
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
560-735 |
4.47e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 126.82 E-value: 4.47e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 560 QLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVgmSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLP 639
Cdd:COG4133 29 EALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAR--EDYRRRLAYLGHADGLKPELTVRENLRFWAALYGLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 640 PASIKsiAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAI 718
Cdd:COG4133 107 ADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAhLARGGAV 184
|
170
....*....|....*..
gi 297797133 719 ILTTHsmEEADILGDRI 735
Cdd:COG4133 185 LLTTH--QPLELAAARV 199
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
520-747 |
7.62e-33 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 126.48 E-value: 7.62e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrs 599
Cdd:cd03259 1 LELKGLSKTYGSV--------------RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 sVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:cd03259 65 -TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALAR 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITR----RHVWDIIQESkkGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03259 144 ALAREPSLLLLDEPLSALDAKLReelrEELKELQREL--GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
520-748 |
5.04e-32 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 125.11 E-value: 5.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03295 1 IEFENVTKRYGGGKK-------------AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 sVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAkiRAGSY----SGGMKRRL 675
Cdd:cd03295 68 -QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAE--FADRYphelSGGQQQRV 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 676 SVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
521-742 |
1.03e-31 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 124.22 E-value: 1.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSS 600
Cdd:cd03256 2 EVENLSKTYPNGK-------------KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKL 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 VGMSN--IRKMIGVCPQFDILWDALSSEE--------HLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGG 670
Cdd:cd03256 69 KGKALrqLRRQIGMIFQQFNLIERLSVLEnvlsgrlgRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 671 MKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
506-749 |
3.06e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 129.25 E-value: 3.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 506 KQQAMDGIVDPNIAVQIHGLAKTYPGTTKlgcckctktSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPV 585
Cdd:COG1123 247 RGRAAPAAAAAEPLLEVRNLSKRYPVRGK---------GGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRP 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 586 TGGDAIIYGNSIR--SSVGMSNIRKMIGVCPQ------------FDILWDALsseeHLHlfasiKGLPPASIKSIAVKLL 651
Cdd:COG1123 318 TSGSILFDGKDLTklSRRSLRELRRRVQMVFQdpysslnprmtvGDIIAEPL----RLH-----GLLSRAERRERVAELL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 652 ADVKLIEAAKIR-AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEA 728
Cdd:COG1123 389 ERVGLPPDLADRyPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDlqRELGLTYLFISHDLAVV 468
|
250 260
....*....|....*....|.
gi 297797133 729 DILGDRIGIMAKGRLRCIGTS 749
Cdd:COG1123 469 RYIADRVAVMYDGRIVEDGPT 489
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
520-743 |
4.71e-31 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 121.48 E-value: 4.71e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYpgttklgcckctktSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-R 598
Cdd:cd03262 1 IEIKNLHKSF--------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSNIRKMIG-VCPQFDiLWDALSSEEHLHLfASIK--GLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRL 675
Cdd:cd03262 67 DKKNINELRQKVGmVFQQFN-LFPHLTVLENITL-APIKvkGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRV 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 676 SVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
520-743 |
6.21e-31 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 121.67 E-value: 6.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLGCCKCTKTSPFH-------AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAII 592
Cdd:cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKrkyreveALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 593 YGNsiRSSVGMSNIRKMIG-VCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGM 671
Cdd:cd03267 81 AGL--VPWKRRKKFLRRIGvVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 672 KRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEynRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
547-735 |
1.82e-30 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 119.56 E-value: 1.82e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRssvgmsNIRKMIGVCPQ-FDILWDA-LS 624
Cdd:cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------KERKRIGYVPQrRSIDRDFpIS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEE--------HLHLFASIKglppASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTG 696
Cdd:cd03235 87 VRDvvlmglygHKGLFRRLS----KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 297797133 697 MDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRI 735
Cdd:cd03235 163 VDPKTQEDIYELLRElRREGMTILVVTHDLGLVLEYFDRV 202
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
546-748 |
9.05e-30 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 118.31 E-value: 9.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRssvGMS-NIRKMIGVCPQFDI--LWDA 622
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT---GLPpHEIARLGIGRTFQIprLFPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 623 LSSEE------HLHLFASIKGLPPAS----IKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:cd03219 90 LTVLEnvmvaaQARTGSGLLLARARReereARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 693 PTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMeeaDI---LGDRIGIMAKGRLRCIGT 748
Cdd:cd03219 170 PAAGLNPEETEELAELIRElRERGITVLLVEHDM---DVvmsLADRVTVLDQGRVIAEGT 226
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
515-748 |
1.05e-29 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 118.65 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 515 DPNIAVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG 594
Cdd:COG1121 2 MMMPAIELENLTVSYGGRP--------------VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 595 NSIRSSvgmsniRKMIGVCPQ-FDILWD-ALSSEE--------HLHLFasikGLPPASIKSIAVKLLADVKLIEAAKIRA 664
Cdd:COG1121 68 KPPRRA------RRRIGYVPQrAEVDWDfPITVRDvvlmgrygRRGLF----RRPSRADREAVDEALERVGLEDLADRPI 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 665 GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG1121 138 GELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRGLV 217
|
....*
gi 297797133 744 rCIGT 748
Cdd:COG1121 218 -AHGP 221
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
517-743 |
3.41e-29 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 116.30 E-value: 3.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 517 NIAVQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS 596
Cdd:COG1136 2 SPLLELRNLTKSYG----------TGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IR--SSVGMSNIR-KMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKR 673
Cdd:COG1136 72 ISslSERELARLRrRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADIlGDRIGIMAKGRL 743
Cdd:COG1136 152 RVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRelGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
547-749 |
9.28e-29 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 115.33 E-value: 9.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSN-IRKMIGVCPQFDILWDALSS 625
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI-TKLPMHKrARLGIGYLPQEASIFRKLTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 297797133 706 WDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:cd03218 173 QKIIKIlKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
521-749 |
1.39e-28 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 115.13 E-value: 1.39e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI--- 597
Cdd:COG1137 5 EAENLVKSYGKRT--------------VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIthl 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 ----RSsvgmsniRKMIGVCPQfdilwDA-----LSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:COG1137 71 pmhkRA-------RLGIGYLPQ-----EAsifrkLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEadILG--DRIGIMAKGRLRC 745
Cdd:COG1137 139 GGERRRVEIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHlKERGIGVLITDHNVRE--TLGicDRAYIISEGKVLA 216
|
....
gi 297797133 746 IGTS 749
Cdd:COG1137 217 EGTP 220
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
516-766 |
1.65e-28 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 117.89 E-value: 1.65e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 516 PNIAVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN 595
Cdd:COG3842 2 AMPALELENVSKRYGDVT--------------ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGR 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIrssvgmSNI---RKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMK 672
Cdd:COG3842 68 DV------TGLppeKRNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 673 RRlsVAIA--LIGDPKLVFLDEPTTGMDPITRRHVW----DIIQESkkGRAIILTTHSMEEADILGDRIGIMAKGRLRCI 746
Cdd:COG3842 142 QR--VALAraLAPEPRVLLLDEPLSALDAKLREEMReelrRLQREL--GITFIYVTHDQEEALALADRIAVMNDGRIEQV 217
|
250 260
....*....|....*....|....
gi 297797133 747 GTSIRL----KSRFGTGFITTVSF 766
Cdd:COG3842 218 GTPEEIyerpATRFVADFIGEANL 241
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
546-761 |
4.20e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 113.49 E-value: 4.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrssVGMSNIRKMIGVCPQFDILWDALSS 625
Cdd:cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI---TNLPPHKRPVNTVFQNYALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:cd03300 90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 706 WDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRL----KSRFGTGFI 761
Cdd:cd03300 170 QLELKRLQKelGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIyeepANRFVADFI 231
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
549-743 |
6.08e-28 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 112.75 E-value: 6.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTT---TISCLTGINPVTGGDaIIYGNSIRSSVGMsniRKMIGVCPQFDILWDALSS 625
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTlldAISGRVEGGGTTSGQ-ILFNGQPRKPDQF---QKCVAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHlFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSY-----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPI 700
Cdd:cd03234 99 RETLT-YTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 297797133 701 TRRHVWDIIQE-SKKGRAIILTTHSmEEADI--LGDRIGIMAKGRL 743
Cdd:cd03234 178 TALNLVSTLSQlARRNRIVILTIHQ-PRSDLfrLFDRILLLSSGEI 222
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
546-743 |
6.09e-28 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 113.60 E-value: 6.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-------RSSVGMS----NIRkmigvcp 614
Cdd:COG0411 17 LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDItglpphrIARLGIArtfqNPR------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 615 qfdiLWDALSSEEHL----------HLFASIKGLPP-----ASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:COG0411 90 ----LFPELTVLENVlvaaharlgrGLLAALLRLPRarreeREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIAR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMeeaDI---LGDRIGIMAKGRL 743
Cdd:COG0411 166 ALATEPKLLLLDEPAAGLNPEETEELAELIRRlrDERGITILLIEHDM---DLvmgLADRIVVLDFGRV 231
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
520-743 |
1.24e-27 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 114.77 E-value: 1.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP---VTGGDAIIYGNS 596
Cdd:COG0444 2 LEVRNLKVYFP----------TRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGED 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IR--SSVGMSNIR-KMIGVCPQfdilwDALSS-----------EEHLHLFasiKGLPPASIKSIAVKLLADVKLIEAAKi 662
Cdd:COG0444 72 LLklSEKELRKIRgREIQMIFQ-----DPMTSlnpvmtvgdqiAEPLRIH---GGLSKAEARERAIELLERVGLPDPER- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 663 RAGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIG 736
Cdd:COG0444 143 RLDRYphelSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDlqRELGLAILFITHDLGVVAEIADRVA 222
|
....*..
gi 297797133 737 IMAKGRL 743
Cdd:COG0444 223 VMYAGRI 229
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
546-742 |
1.49e-27 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 111.37 E-value: 1.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSS 625
Cdd:cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIkgLPPASIKSIavklLADV-----KLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPI 700
Cdd:cd03224 93 EENLLLGAYA--RRRAKRKAR----LERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 297797133 701 TRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd03224 167 IVEEIFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
549-695 |
1.76e-27 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 108.89 E-value: 1.76e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVgMSNIRKMIGVCPQFDILWDALSSEEH 628
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE-RKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 629 LHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAG----SYSGGMKRRLSVAIALIGDPKLVFLDEPTT 695
Cdd:pfam00005 80 LRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
547-847 |
1.81e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 114.03 E-value: 1.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGI-NPvTGGDAIIYG-----NSIRssvgmsnIRKMIGVCpqF---- 616
Cdd:COG4586 36 EAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGIlVP-TSGEVRVLGyvpfkRRKE-------FARRIGVV--Fgqrs 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 617 DILWDaLSSEEHLHLFASIKGLPPASIKsiavKLLAD-VKLIEAAKIragsysggMK---RRLS--------VAIALIGD 684
Cdd:COG4586 106 QLWWD-LPAIDSFRLLKAIYRIPDAEYK----KRLDElVELLDLGEL--------LDtpvRQLSlgqrmrceLAAALLHR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMeeADI--LGDRIGIMAKGRLRCIGTSIRLKSRFGTGF 760
Cdd:COG4586 173 PKILFLDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDM--DDIeaLCDRVIVIDHGRIIYDGSLEELKERFGPYK 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 761 ITTVSFpenkkdsARSTSPEPLKRFFkehlKVEPTEESKAFMTFviphDKEQLLTGFFAELQDReseFGISDIQLGLATL 840
Cdd:COG4586 251 TIVLEL-------AEPVPPLELPRGG----EVIEREGNRVRLEV----DPRESLAEVLARLLAR---YPVRDLTIEEPPI 312
|
....*..
gi 297797133 841 EEVFLNI 847
Cdd:COG4586 313 EEVIRRI 319
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
548-749 |
5.23e-27 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 110.44 E-value: 5.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSSEE 627
Cdd:TIGR04406 16 VVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYLPQEASIFRKLTVEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HLHLFASI-KGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:TIGR04406 96 NIMAVLEIrKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVDPIAVGDIK 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 297797133 707 DIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:TIGR04406 176 KIIKHLKeRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTP 219
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
545-743 |
8.28e-27 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 109.58 E-value: 8.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 545 PFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPV-----TGGDAIIYGNSIRS-SVGMSNIRKMIGVCPQ--- 615
Cdd:cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDlDVDVLELRRRVGMVFQkpn 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 -FDilwdaLSSEEHLHLFASIKG-LPPASIKSIAVKLLADVKLIEAAKIR--AGSYSGGMKRRLSVAIALIGDPKLVFLD 691
Cdd:cd03260 92 pFP-----GSIYDNVAYGLRLHGiKLKEELDERVEEALRKAALWDEVKDRlhALGLSGGQQQRLCLARALANEPEVLLLD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 692 EPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03260 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
520-742 |
8.73e-27 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 108.04 E-value: 8.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03229 1 LELKNVSKRYGQKT--------------VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SVGMS-NIRKMIGVCPQFDILWDALSSEEHLHLfasikGLppasiksiavklladvklieaakiragsySGGMKRRLSVA 678
Cdd:cd03229 67 LEDELpPLRRRIGMVFQDFALFPHLTVLENIAL-----GL-----------------------------SGGQQQRVALA 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 679 IALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd03229 113 RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAqlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
521-747 |
1.79e-26 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 107.14 E-value: 1.79e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSS 600
Cdd:cd03214 1 EVENLSVGYGGRT--------------VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-AS 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 VGMSNIRKMIGVCPQfdilwdalsseehlhlfasikglppasiksiavkLLADVKLIEAAKIRAGSYSGGMKRRLSVAIA 680
Cdd:cd03214 66 LSPKELARKIAYVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARA 111
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 681 LIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARerGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
519-748 |
2.53e-26 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 108.98 E-value: 2.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR 598
Cdd:COG1120 1 MLEAENLSVGYGGRP--------------VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SsvgMSN--IRKMIGVCPQFDILWDALSSEE--------HLHLFASikglPPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:COG1120 67 S---LSRreLARRIAYVPQEPPAPFGLTVRElvalgrypHLGLFGR----PSAEDREAVEEALERTGLEHLADRPVDELS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCI 746
Cdd:COG1120 140 GGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQ 219
|
..
gi 297797133 747 GT 748
Cdd:COG1120 220 GP 221
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
554-743 |
4.06e-26 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 106.82 E-value: 4.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSIRSSVGMSNIRKMIGVCPQFDILWDAlSSEEHLHLFA 633
Cdd:COG4619 21 LTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGE-IYLDGKPLSAMPPPEWRRQVAYVPQEPALWGG-TVRDNLPFPF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SIKGLPPAsiKSIAVKLLADVKLIEAA-KIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE- 711
Cdd:COG4619 99 QLRERKFD--RERALELLERLGLPPDIlDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREy 176
|
170 180 190
....*....|....*....|....*....|...
gi 297797133 712 -SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG4619 177 lAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
520-742 |
5.99e-26 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 105.16 E-value: 5.99e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:cd03228 1 IEFKNVSFSYPGRPKP------------VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 sVGMSNIRKMIGVCPQFDILWDAlsseehlhlfasikglppasikSIAVKLLadvklieaakiragsySGGMKRRLSVAI 679
Cdd:cd03228 69 -LDLESLRKNIAYVPQDPFLFSG----------------------TIRENIL----------------SGGQRQRIAIAR 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADiLGDRIGIMAKGR 742
Cdd:cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
520-743 |
1.30e-25 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 106.13 E-value: 1.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktsPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-- 597
Cdd:cd03258 2 IELKNVSKVFGDTGG----------KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLtl 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFAS------------IKGLPPASIKSIAVKLLADVKLIEAAKIRAG 665
Cdd:cd03258 72 LSGKELRKARRRIGMIFQ------------HFNLLSSrtvfenvalpleIAGVPKAEIEERVLELLELVGLEDKADAYPA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDinRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
497-748 |
1.40e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 112.55 E-value: 1.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 497 DVLEEEILVKQQAMDGIVDPNIAVQIHGLAKTYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTI 576
Cdd:COG4987 311 ELLDAPPAVTEPAEPAPAPGGPSLELEDVSFRYPGAGRP------------VLDGLSLTLPPGERVAIVGPSGSGKSTLL 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 577 SCLTGINPVTGGDAIIYGNSIRSSVGmSNIRKMIGVCPQfdilwdalsseeHLHLF-ASIK-----GLPPASiksiavkl 650
Cdd:COG4987 379 ALLLRFLDPQSGSITLGGVDLRDLDE-DDLRRRIAVVPQ------------RPHLFdTTLRenlrlARPDAT-------- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 651 laDVKLIEAAKiRAG---------------------SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII 709
Cdd:COG4987 438 --DEELWAALE-RVGlgdwlaalpdgldtwlgeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADL 514
|
250 260 270
....*....|....*....|....*....|....*....
gi 297797133 710 QESKKGRAIILTTHSMEEADiLGDRIGIMAKGRLRCIGT 748
Cdd:COG4987 515 LEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGT 552
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
545-749 |
1.48e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 106.22 E-value: 1.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 545 PFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGdAIIY-GNSIrssVGMS---NIRKMIGVCPQFDILW 620
Cdd:COG0410 15 GIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSG-SIRFdGEDI---TGLPphrIARLGIGYVPEGRRIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 621 DALSSEEHLHLfasikGLPPASIKSIAVKLLADV-----KLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTT 695
Cdd:COG0410 91 PSLTVEENLLL-----GAYARRDRAEVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 696 GMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:COG0410 166 GLAPLIVEEIFEIIRRlNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTA 220
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
547-744 |
1.16e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.56 E-value: 1.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRssvGMSNIRkmiGVCPQFDILWDALSSE 626
Cdd:COG4525 21 PALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVT---GPGADR---GVVFQKDALLPWLNVL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 EHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH-- 704
Cdd:COG4525 95 DNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDALTREQmq 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 297797133 705 --VWDIIQESKKGraIILTTHSMEEADILGDRIGIMAKGRLR 744
Cdd:COG4525 175 elLLDVWQRTGKG--VFLITHSVEEALFLATRLVVMSPGPGR 214
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
519-756 |
1.35e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 103.73 E-value: 1.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR 598
Cdd:COG1124 1 MLEVRNLSVSYG----------QGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSnIRKMIGVCPQfdilwDALSS-------EEHLHLFASIKGLPPasIKSIAVKLLADVKLIEAAKIRagsY---- 667
Cdd:COG1124 71 RRRRKA-FRRRVQMVFQ-----DPYASlhprhtvDRILAEPLRIHGLPD--REERIAELLEQVGLPPSFLDR---Yphql 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRC 745
Cdd:COG1124 140 SGGQRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREerGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVE 219
|
250
....*....|.
gi 297797133 746 IGTSIRLKSRF 756
Cdd:COG1124 220 ELTVADLLAGP 230
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
554-743 |
1.88e-24 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 103.25 E-value: 1.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS-SVGMSNIRKMIG-VCPQFDiLWDALSSEEHLhL 631
Cdd:PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDpKVDERLIRQEAGmVFQQFY-LFPHLTALENV-M 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 632 FASIK--GLPPASIKSIAVKLLADVKLIEaakiRAGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:PRK09493 100 FGPLRvrGASKEEAEKQARELLAKVGLAE----RAHHYpselSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEV 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 297797133 706 WDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK09493 176 LKVMQDlAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
549-727 |
2.14e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 103.24 E-value: 2.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGIN-PVTGGDAIIYGNSiRSSVGMSNIRKMIGV--------CPQFDIL 619
Cdd:COG1119 19 LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLpPTYGNDVRLFGER-RGGEDVWELRKRIGLvspalqlrFPRDETV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDA-LSSeehlhLFASIkGL---PPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTT 695
Cdd:COG1119 98 LDVvLSG-----FFDSI-GLyrePTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTA 171
|
170 180 190
....*....|....*....|....*....|....
gi 297797133 696 GMDPITRRHVWDIIQE--SKKGRAIILTTHSMEE 727
Cdd:COG1119 172 GLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
564-743 |
2.25e-24 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 101.47 E-value: 2.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTG--INPVTGGDAIIYGnsirSSVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLppa 641
Cdd:cd03213 40 IMGPSGAGKSTLLNALAGrrTGLGVSGEVLING----RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL--- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 642 siksiavklladvklieaakiragsySGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII-QESKKGRAIIL 720
Cdd:cd03213 113 --------------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLrRLADTGRTIIC 166
|
170 180
....*....|....*....|....*
gi 297797133 721 TTHSmEEADILG--DRIGIMAKGRL 743
Cdd:cd03213 167 SIHQ-PSSEIFElfDKLLLLSQGRV 190
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
519-757 |
3.15e-24 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 105.20 E-value: 3.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYpGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAgktttiSCLTGINP--VTGGDAiiYGNS 596
Cdd:NF000106 13 AVEVRGLVKHF-GEVK-------------AVDGVDLDVREGTVLGVLGP*GA------A**RGALPahV*GPDA--GRRP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IRSSVGMSN---IRKMIGVC-PQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMK 672
Cdd:NF000106 71 WRF*TWCANrraLRRTIG*HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 673 RRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQES-KKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIR 751
Cdd:NF000106 151 RRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMvRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDE 230
|
....*.
gi 297797133 752 LKSRFG 757
Cdd:NF000106 231 LKTKVG 236
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
546-758 |
4.32e-24 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 109.06 E-value: 4.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvGMsNIRKMIGVCPQFDILWDALSS 625
Cdd:NF033858 279 FTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAG-DI-ATRRRVGYMSQAFSLYGELTV 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHV 705
Cdd:NF033858 357 RQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMF 436
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 706 WDIIQE--SKKGRAIILTTHSMEEADiLGDRIGIMAKGRLRCIGTSIRLKSRFGT 758
Cdd:NF033858 437 WRLLIElsREDGVTIFISTHFMNEAE-RCDRISLMHAGRVLASDTPAALVAARGA 490
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
541-749 |
9.68e-24 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 101.95 E-value: 9.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRK----MI---- 610
Cdd:cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAamSRKELRELRRkkisMVfqsf 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 611 GVCPQFDILwdalsseEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFL 690
Cdd:cd03294 112 ALLPHRTVL-------ENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 691 DEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:cd03294 185 DEAFSALDPLIRREMQDELLRlqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTP 245
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
520-747 |
2.08e-23 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 99.25 E-value: 2.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSirs 599
Cdd:cd03301 1 VELENVTKRFGNVT--------------ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD--- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 svgMSNIR---KMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSiavklladvKLIEAAKI---------RAGSY 667
Cdd:cd03301 64 ---VTDLPpkdRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE---------RVREVAELlqiehlldrKPKQL 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRhvwDIIQESKK-----GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV---QMRAELKRlqqrlGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
....*
gi 297797133 743 LRCIG 747
Cdd:cd03301 209 IQQIG 213
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
546-748 |
3.91e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 99.42 E-value: 3.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrssVGMSN--IRKMiGVCPQFDI--LWD 621
Cdd:COG4674 23 FKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDL---TGLDEheIARL-GIGRKFQKptVFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 ALSSEEHLHL--------FASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEP 693
Cdd:COG4674 99 ELTVFENLELalkgdrgvFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 694 TTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:COG4674 179 VAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
515-748 |
4.13e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 104.84 E-value: 4.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 515 DPNIAVQIHGLAKTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG 594
Cdd:COG4988 332 AGPPSIELEDVSFSYPGGRP-------------ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILING 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 595 NSIRsSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFA-SIK-----GLPPASiksiavkllaDVKLIEAAKiRAGSY- 667
Cdd:COG4988 399 VDLS-DLDPASWRRQIAWVPQ------------NPYLFAgTIRenlrlGRPDAS----------DEELEAALE-AAGLDe 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 --------------------SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEE 727
Cdd:COG4988 455 fvaalpdgldtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLAL 534
|
250 260
....*....|....*....|.
gi 297797133 728 ADiLGDRIGIMAKGRLRCIGT 748
Cdd:COG4988 535 LA-QADRILVLDDGRIVEQGT 554
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
517-748 |
9.39e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 98.91 E-value: 9.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 517 NIAVQIHGLAKTYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS 596
Cdd:PRK13632 5 SVMIKVENVSFSYPNSENN------------ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IrSSVGMSNIRKMIGVC---P--QF-------DIlwdALSSEEhlhlfasiKGLPPASIKSIAVKLLADVKLIEAAKIRA 664
Cdd:PRK13632 73 I-SKENLKEIRKKIGIIfqnPdnQFigatvedDI---AFGLEN--------KKVPPKKMKDIIDDLAKKVGMEDYLDKEP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 665 GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEAdILGDRIGIMAKGR 742
Cdd:PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDlrKTRKKTLISITHDMDEA-ILADKVIVFSEGK 219
|
....*.
gi 297797133 743 LRCIGT 748
Cdd:PRK13632 220 LIAQGK 225
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
540-748 |
4.29e-22 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 96.25 E-value: 4.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 540 CTKTSPFHaVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrssVGMSNIRKMIGVCPQFDIL 619
Cdd:cd03299 7 SKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI---TNLPPEKRDISYVPQNYAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP 699
Cdd:cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 297797133 700 ITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:cd03299 163 RTKEKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
548-757 |
1.11e-21 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 101.06 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQfdilwdalssee 627
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQ-IDPASLRRQIGVVLQ------------ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HLHLFA-SIK-----GLPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSVAIAL 681
Cdd:COG2274 557 DVFLFSgTIRenitlGDPDAT----------DEEIIEAARLaglhdfiealpmgydtvvgeGGSNLSGGQRQRLAIARAL 626
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 682 IGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:COG2274 627 LRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLDKGRIVEDGTHEELLARKG 701
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
554-747 |
1.52e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 93.90 E-value: 1.52e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKD---QLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG---NSIRSSVGMSNIRKMIGVCPQFDILWDALSSEE 627
Cdd:cd03297 15 LKIDFDlneEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HLhLFAsIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWD 707
Cdd:cd03297 95 NL-AFG-LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 297797133 708 IIQESKKGRAI--ILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03297 173 ELKQIKKNLNIpvIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
520-743 |
1.90e-21 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 96.69 E-value: 1.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-- 597
Cdd:COG1135 2 IELENLSKTFP----------TKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLta 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFAS------------IKGLPPASIKSIAVKLLADVKLIEaakiRAG 665
Cdd:COG1135 72 LSERELRAARRKIGMIFQ------------HFNLLSSrtvaenvalpleIAGVPKAEIRKRVAELLELVGLSD----KAD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 SY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMA 739
Cdd:COG1135 136 AYpsqlSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDinRELGLTIVLITHEMDVVRRICDRVAVLE 215
|
....
gi 297797133 740 KGRL 743
Cdd:COG1135 216 NGRI 219
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
549-743 |
2.24e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 92.28 E-value: 2.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDAlsseeh 628
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI-SQWDPNELGDHVGYLPQDDELFSG------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 629 lhlfasikglppasikSIAVKLLadvklieaakiragsySGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDI 708
Cdd:cd03246 91 ----------------SIAENIL----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
|
170 180 190
....*....|....*....|....*....|....*.
gi 297797133 709 IQE-SKKGRAIILTTHSMEEADILgDRIGIMAKGRL 743
Cdd:cd03246 139 IAAlKAAGATRIVIAHRPETLASA-DRILVLEDGRV 173
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
521-742 |
3.13e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 99.35 E-value: 3.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTKLGCCKCTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP---VTGGDAIIYGNSI 597
Cdd:TIGR00955 13 RVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNGMPI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 rssvGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKgLP---PASIKSIAVK-LLADVKLIEAAKIRAG------SY 667
Cdd:TIGR00955 93 ----DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR-MPrrvTKKEKRERVDeVLQALGLRKCANTRIGvpgrvkGL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSmEEADI--LGDRIGIMAKGR 742
Cdd:TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGlAQKGKTIICTIHQ-PSSELfeLFDKIILMAEGR 244
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
520-743 |
3.81e-21 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 93.19 E-value: 3.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG---NS 596
Cdd:COG2884 2 IRFENVSKRYPGGRE-------------ALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGqdlSR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IRSSvGMSNIRKMIGVCPQ-FDILWDaLSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRL 675
Cdd:COG2884 69 LKRR-EIPYLRRRIGVVFQdFRLLPD-RTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRV 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 676 SVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG2884 147 AIARALVNRPELLLADEPTGNLDPETSWEIMELLEEiNRRGTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
525-748 |
4.02e-21 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 93.42 E-value: 4.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 525 LAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMS 604
Cdd:PRK10895 9 LAKAYKGRR--------------VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 605 NIRKMIGVCPQFDILWDALSSEEHLHLFASI-KGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIG 683
Cdd:PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 684 DPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRdSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
520-768 |
5.22e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 96.06 E-value: 5.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:PRK11607 20 LEIRNLTKSFDGQ--------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 svgMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAI 679
Cdd:PRK11607 86 ---VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRR----HVWDIIQesKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRL--- 752
Cdd:PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDrmqlEVVDILE--RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIyeh 240
|
250
....*....|....*..
gi 297797133 753 -KSRFGTGFITTVSFPE 768
Cdd:PRK11607 241 pTTRYSAEFIGSVNVFE 257
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
519-761 |
9.39e-21 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 94.75 E-value: 9.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG---N 595
Cdd:COG3839 3 SLELENVSKSYGGVE--------------ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGrdvT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIRSS---VGMsnirkmigVcPQFDILWDALSSEEHLhLFA-SIKGLPPASIKSiAVKlladvkliEAAKI--------- 662
Cdd:COG3839 69 DLPPKdrnIAM--------V-FQSYALYPHMTVYENI-AFPlKLRKVPKAEIDR-RVR--------EAAELlgledlldr 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 663 RAGSYSGGMKRRlsVAI--ALIGDPKLVFLDEPTTGMDPITRrhvWDIIQESKK-----GRAIILTTHSMEEADILGDRI 735
Cdd:COG3839 130 KPKQLSGGQRQR--VALgrALVREPKVFLLDEPLSNLDAKLR---VEMRAEIKRlhrrlGTTTIYVTHDQVEAMTLADRI 204
|
250 260 270
....*....|....*....|....*....|
gi 297797133 736 GIMAKGRLRCIGTSIRL----KSRFGTGFI 761
Cdd:COG3839 205 AVMNDGRIQQVGTPEELydrpANLFVAGFI 234
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
520-742 |
1.18e-20 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 91.98 E-value: 1.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-R 598
Cdd:COG1126 2 IEIENLHKSFGD--------------LEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLtD 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFA-------------SIKGLPPASIKSIAVKLLADVKLIEaakiRAG 665
Cdd:COG1126 68 SKKDINKLRRKVGMVFQ------------QFNLFPhltvlenvtlapiKVKKMSKAEAEERAMELLERVGLAD----KAD 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 SY----SGGMKRRlsVAIA--LIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIM 738
Cdd:COG1126 132 AYpaqlSGGQQQR--VAIAraLAMEPKVMLFDEPTSALDPELVGEVLDVMRDlAKEGMTMVVVTHEMGFAREVADRVVFM 209
|
....
gi 297797133 739 AKGR 742
Cdd:COG1126 210 DGGR 213
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
521-741 |
1.54e-20 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 90.78 E-value: 1.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTKLgcckctktspfhaVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGdAIIYGNSIRSS 600
Cdd:cd03226 1 RIENISFSYKKGTEI-------------LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 601 vgmSNIRKMIGVCPQ---FDILWDALSSEehlhLFASIKGLPPAsiKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSV 677
Cdd:cd03226 67 ---KERRKSIGYVMQdvdYQLFTDSVREE----LLLGLKELDAG--NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAI 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 678 AIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKG 741
Cdd:cd03226 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
548-748 |
1.40e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 89.28 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKmiGVCPQFD--ILWDALSS 625
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM--GVVRTFQhvRLFREMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EE------HLHLFASI-KGL--PPASIKSIAVKL------LADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFL 690
Cdd:PRK11300 98 IEnllvaqHQQLKTGLfSGLlkTPAFRRAESEALdraatwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 691 DEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK11300 178 DEPAAGLNPKETKELDELIAELRNehNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
549-747 |
1.51e-19 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 88.68 E-value: 1.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvgmsNIRKMIgVCPQFDIL-WDALSSEE 627
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP----GPDRMV-VFQNYSLLpWLTVRENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWD 707
Cdd:TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 297797133 708 ----IIQESkkGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:TIGR01184 156 elmqIWEEH--RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
544-748 |
2.22e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 89.72 E-value: 2.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFH--AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS-SVGMSNIRKMIGVC---PQFD 617
Cdd:PRK13637 16 TPFEkkALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkKVKLSDIRKKVGLVfqyPEYQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ILWDALssEEHLHLFASIKGLPPASIKSIAVKLLADVKL-IEAAKIRAG-SYSGGMKRRLSVAIALIGDPKLVFLDEPTT 695
Cdd:PRK13637 96 LFEETI--EKDIAFGPINLGLSEEEIENRVKRAMNIVGLdYEDYKDKSPfELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 696 GMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13637 174 GLDPKGRDEILNKIKElhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
548-748 |
2.56e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 88.98 E-value: 2.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR-SSVGMSNIRKMIGVCPQF--DILWdALS 624
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKyDKKSLLEVRKTVGIVFQNpdDQLF-APT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH 704
Cdd:PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 297797133 705 VWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13639 176 IMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
544-743 |
5.03e-19 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 86.87 E-value: 5.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQfdilwdal 623
Cdd:cd03245 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQ-LDPADLRRNIGYVPQ-------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 624 sseeHLHLFA-SIK-----GLPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSV 677
Cdd:cd03245 86 ----DVTLFYgTLRdnitlGAPLAD----------DERILRAAELagvtdfvnkhpngldlqigeRGRGLSGGQRQAVAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 678 AIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADiLGDRIGIMAKGRL 743
Cdd:cd03245 152 ARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
547-747 |
8.90e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 86.82 E-value: 8.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTT---TISCLTGINPVTG--GDAIIYGNSIRS-SVGMSNIRKMIGVCPQFDILW 620
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTllrTFNRLLELNEEARveGEVRLFGRNIYSpDVDPIEVRREVGMVFQYPNPF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 621 DALSSEEHLHLFASIKGL--PPASIKSIAVKLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIGDPKLVFLDEPT 694
Cdd:PRK14267 98 PHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRlndyPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 695 TGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK14267 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
556-743 |
9.28e-19 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 86.41 E-value: 9.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 556 IAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIR-KMIGVCPQFDILWDALSSEEHLHLF 632
Cdd:PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSklSSAAKAELRnQKLGFIYQFHHLLPDFTALENVAMP 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 633 ASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE- 711
Cdd:PRK11629 112 LLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGEl 191
|
170 180 190
....*....|....*....|....*....|...
gi 297797133 712 -SKKGRAIILTTHSMEEADILGDRIGiMAKGRL 743
Cdd:PRK11629 192 nRLQGTAFLVVTHDLQLAKRMSRQLE-MRDGRL 223
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
520-748 |
1.22e-18 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 84.02 E-value: 1.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRs 599
Cdd:cd03216 1 LELRGITKRFGGV--------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 svgmsnirkmigvcpqfdilwdalsseehlhlFASIKglppasiksiavklladvkliEAakIRAGSY-----SGGMKRR 674
Cdd:cd03216 66 --------------------------------FASPR---------------------DA--RRAGIAmvyqlSVGERQM 90
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 675 LSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLrcIGT 748
Cdd:cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRlRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV--VGT 163
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
519-805 |
1.28e-18 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 91.34 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR 598
Cdd:NF033858 1 VARLEGVSHRYGKTV--------------ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMA 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGmsniRKMigVCPQfdI----------LWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:NF033858 67 DARH----RRA--VCPR--IaympqglgknLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRA---IILTTHSMEEADILgDRIGIMAKGRLRC 745
Cdd:NF033858 139 GGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERPgmsVLVATAYMEEAERF-DWLVAMDAGRVLA 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 746 IGTSIRLKSRFGTG-----FITTVsfPENKKDSARSTSPEPLKRFFKEHLKVEPTEESKAFMTFV 805
Cdd:NF033858 218 TGTPAELLARTGADtleaaFIALL--PEEKRRGHQPVVIPPRPADDDDEPAIEARGLTMRFGDFT 280
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
520-747 |
2.07e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 85.28 E-value: 2.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLG--------CCKCTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAI 591
Cdd:cd03220 1 IELENVSKSYPTYKGGSsslkklgiLGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 592 IYGNsIRSSVGMsnirkMIGVCPQfdilwdaLSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGM 671
Cdd:cd03220 81 VRGR-VSSLLGL-----GGGFNPE-------LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGM 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 672 KRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:cd03220 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRElLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
548-748 |
2.18e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 86.29 E-value: 2.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKMIGVC---PQFDILwdALS 624
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVfqnPDNQIV--ATI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH 704
Cdd:PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 297797133 705 VWDIIQE--SKKGRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13633 183 VVNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGT 227
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
550-757 |
2.71e-18 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 84.97 E-value: 2.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQFDILWDALsseehl 629
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE-VTLDSLRRAIGVVPQDTVLFNDT------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 630 hLFASIK-GLPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSVAIALIGDPKLV 688
Cdd:cd03253 91 -IGYNIRyGRPDAT----------DEEVIEAAKAaqihdkimrfpdgydtivgeRGLKLSGGEKQRVAIARAILKNPPIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHEELLAKGG 227
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
555-748 |
3.14e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 85.57 E-value: 3.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 555 NIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSIRSSVGMSNIRKMIGVCPQ------------FDIlwdA 622
Cdd:PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE-IFYNNQAITDDNFEKLRKHIGIVFQnpdnqfvgsivkYDV---A 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 623 LSSEEHLhlfasikgLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITR 702
Cdd:PRK13648 107 FGLENHA--------VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 297797133 703 RHVWDIIQESK--KGRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13648 179 QNLLDLVRKVKseHNITIISITHDLSEA-MEADHVIVMNKGTVYKEGT 225
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
520-743 |
3.91e-18 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 83.13 E-value: 3.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGGdaiIYGNSIR 598
Cdd:cd03247 1 LSINNVSFSYPEQEQ------------QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGdLKPQQGE---ITLDGVP 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFasikglppasiksiavkllaDVKLIEAAKIRagsYSGGMKRRLSVA 678
Cdd:cd03247 66 VSDLEKALSSLISVLNQ------------RPYLF--------------------DTTLRNNLGRR---FSGGERQRLALA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 679 IALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRL 743
Cdd:cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHhltGIEHM----DKILFLENGKI 174
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
547-743 |
3.93e-18 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 84.55 E-value: 3.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSSE 626
Cdd:PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 EHLHL--FASIKGLPPASIKSIaVKLLAdvKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH 704
Cdd:PRK11614 99 ENLAMggFFAERDQFQERIKWV-YELFP--RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 297797133 705 VWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK11614 176 IFDTIEQlREQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
520-743 |
4.00e-18 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 86.78 E-value: 4.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktsPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR- 598
Cdd:PRK11153 2 IELKNISKVFPQGGR----------TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTa 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 -SSVGMSNIRKMIGVCPQfdilwdalsseeHLHLFAS------------IKGLPPASIKSIAVKLLADVKLIEaakiRAG 665
Cdd:PRK11153 72 lSEKELRKARRQIGMIFQ------------HFNLLSSrtvfdnvalpleLAGTPKAEIKARVTELLELVGLSD----KAD 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 SY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMA 739
Cdd:PRK11153 136 RYpaqlSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDinRELGLTIVLITHEMDVVKRICDRVAVID 215
|
....
gi 297797133 740 KGRL 743
Cdd:PRK11153 216 AGRL 219
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
527-743 |
4.58e-18 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 84.00 E-value: 4.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 527 KTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI----RSSVG 602
Cdd:cd03292 8 KTYPNGTA-------------ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 603 MsnIRKMIGVCPQ-FDILWDaLSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIAL 681
Cdd:cd03292 75 Y--LRRKIGVVFQdFRLLPD-RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 682 IGDPKLVFLDEPTTGMDPITRRHVWDIIQES-KKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKInKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
517-742 |
8.07e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 84.79 E-value: 8.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 517 NIAVQIHGLAKTYPGTTklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS 596
Cdd:PRK13647 2 DNIIEVEDLHFRYKDGT-------------KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IRSSvGMSNIRKMIGVCPQ------FD-ILWDALSseehlhlFASIK-GLPPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:PRK13647 69 VNAE-NEKWVRSKVGLVFQdpddqvFSsTVWDDVA-------FGPVNmGLDKDEVERRVEEALKAVRMWDFRDKPPYHLS 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK13647 141 YGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
519-801 |
8.40e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 83.98 E-value: 8.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIr 598
Cdd:PRK11248 1 MLQISHLYADYGGKP--------------ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 ssVGMSNIRkmiGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVA 678
Cdd:PRK11248 66 --EGPGAER---GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 679 IALIGDPKLVFLDEPTTGMDPITRRH-------VWdiiQESkkGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGtsiR 751
Cdd:PRK11248 141 RALAANPQLLLLDEPFGALDAFTREQmqtlllkLW---QET--GKQVLLITHDIEEAVFMATELVLLSPGPGRVVE---R 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 752 LKSRFGTGFITtvsfpenkKDSARSTSPEPlkRFF--KEHLKVEPTEESKAF 801
Cdd:PRK11248 213 LPLNFARRFVA--------GESSRSIKSDP--QFIamREYVLSRVFEQREAF 254
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
498-729 |
1.08e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 87.34 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 498 VLEEEILVKQQAMDGIVDPNIAVQIHGLAKTYPGTTKlgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTIS 577
Cdd:TIGR02857 300 VLDAAPRPLAGKAPVTAAPASSLEFSGVSVAYPGRRP-------------ALRPVSFTVPPGERVALVGPSGAGKSTLLN 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 578 CLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQfdilwdalsseeHLHLFAsikglppasiKSIAVKLL-----A 652
Cdd:TIGR02857 367 LLLGFVDPTEGSIAVNGVPLAD-ADADSWRDQIAWVPQ------------HPFLFA----------GTIAENIRlarpdA 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 653 DVKLIEAAKIRAGSY---------------------SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE 711
Cdd:TIGR02857 424 SDAEIREALERAGLDefvaalpqgldtpigeggaglSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA 503
|
250 260
....*....|....*....|.
gi 297797133 712 SKKGRAIILTTHS---MEEAD 729
Cdd:TIGR02857 504 LAQGRTVLLVTHRlalAALAD 524
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
520-761 |
1.60e-17 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 85.20 E-value: 1.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN--SI 597
Cdd:COG1118 3 IEVRNISKRFGS--------------FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRdlFT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIrkmiGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSV 677
Cdd:COG1118 69 NLPPRERRV----GFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 678 AIALIGDPKLVFLDEPTTGMDPITRRHVW----DIIQESkkGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRL- 752
Cdd:COG1118 145 ARALAVEPEVLLLDEPFGALDAKVRKELRrwlrRLHDEL--GGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVy 222
|
250
....*....|..
gi 297797133 753 ---KSRFGTGFI 761
Cdd:COG1118 223 drpATPFVARFL 234
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
546-733 |
1.73e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 83.29 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPV-----TGGDAIIYGNSIRSS-VGMSNIRKMIGVCPQ---- 615
Cdd:PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLipgfrVEGKVTFHGKNLYAPdVDPVEVRRRIGMVFQkpnp 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 FdilwdALSSEEHLHLFASIKG-------LPPASIKSIAvkLLADVKliEAAKIRAGSYSGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK14243 103 F-----PKSIYDNIAYGARINGykgdmdeLVERSLRQAA--LWDEVK--DKLKQSGLSLSGGQQQRLCIARAIAVQPEVI 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGD 733
Cdd:PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSD 218
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
548-743 |
2.07e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 82.90 E-value: 2.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLT---GINP-VTGGDAIIY-GNSIRS-SVGMSNIRKMIGVCPQ----Fd 617
Cdd:PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmnDLNPeVTITGSIVYnGHNIYSpRTDTVDLRKEIGMVFQqpnpF- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ilwdALSSEEHLHLFASIKGLPPASIKSIAV-KLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:PRK14239 99 ----PMSIYENVVYGLRLKGIKDKQVLDEAVeKSLKGASIWDEVKDRlhdsALGLSGGQQQRVCIARVLATSPKIILLDE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 297797133 693 PTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK14239 175 PTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
547-743 |
2.73e-17 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 81.89 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQFDIL------- 619
Cdd:cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD-ISRKSLRSMIGVVLQDTFLfsgtime 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 -------------WDALSSEEHLHLFasIKGLPPAsiksiavklladvkLIEAAKIRAGSYSGGMKRRLSVAIALIGDPK 686
Cdd:cd03254 96 nirlgrpnatdeeVIEAAKEAGAHDF--IMKLPNG--------------YDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 687 LVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRL 743
Cdd:cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHrlsTIKNA----DKILVLDDGKI 215
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
516-748 |
2.79e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 85.84 E-value: 2.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 516 PNIAVQIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN 595
Cdd:COG1129 1 AEPLLEMRGISKSFGGV--------------KALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIR-SSVGMSnIRKMIGVCPQfDI-LWDALSSEEHLHLfasikGLPPAS--------IKSIAVKLLADVKLIEAAKIRAG 665
Cdd:COG1129 67 PVRfRSPRDA-QAAGIAIIHQ-ELnLVPNLSVAENIFL-----GREPRRgglidwraMRRRARELLARLGLDIDPDTPVG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 SYSGGmKRRLsVAI--ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:COG1129 140 DLSVA-QQQL-VEIarALSRDARVLILDEPTASLTEREVERLFRIIRRlKAQGVAIIYISHRLDEVFEIADRVTVLRDGR 217
|
....*.
gi 297797133 743 LrcIGT 748
Cdd:COG1129 218 L--VGT 221
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
547-742 |
6.16e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 82.20 E-value: 6.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGI-NPVTGgdAIIYGNSI--RSSVGMSNIRKMIGVCPQF--DILWD 621
Cdd:PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIlKPSSG--RILFDGKPidYSRKGLMKLRESVGMVFQDpdNQLFS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 AlSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPIT 701
Cdd:PRK13636 98 A-SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 297797133 702 RRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK13636 177 VSEIMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
542-748 |
7.74e-17 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 83.93 E-value: 7.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 542 KTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIR-KMIGVCPQFDI 618
Cdd:PRK10070 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkiSDAELREVRrKKIAMVFQSFA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 LWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMD 698
Cdd:PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 699 PITRRHVWD--IIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK10070 197 PLIRTEMQDelVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
560-741 |
9.91e-17 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 79.21 E-value: 9.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 560 QLFCLLGPNGAGKTTTISCLTG--INPVTGGDAIIYGNSIRSsvgmsNIRKMIGVCPQFDILWDALSSEEHLHLFASIKG 637
Cdd:cd03232 34 TLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLDK-----NFQRSTGYVEQQDVHSPNLTVREALRFSALLRG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LppasiksiavklladvklieaakiragsySGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPitrRHVWDIIQESKK--- 714
Cdd:cd03232 109 L-----------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDS---QAAYNIVRFLKKlad 156
|
170 180 190
....*....|....*....|....*....|
gi 297797133 715 -GRAIILTTHSmEEADILG--DRIGIMAKG 741
Cdd:cd03232 157 sGQAILCTIHQ-PSASIFEkfDRLLLLKRG 185
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
497-748 |
1.10e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 84.49 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 497 DVLEEEILVKQQAMDGIVDPNIAVQIHGLAKTYPGttklgcckctktSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTI 576
Cdd:PRK11160 316 EITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPD------------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 577 SCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQfdilwdalsseeHLHLF-ASIK-----GLPPAS-IKSIAVk 649
Cdd:PRK11160 384 QLLTRAWDPQQGEILLNGQPI-ADYSEAALRQAISVVSQ------------RVHLFsATLRdnlllAAPNASdEALIEV- 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 650 lLADV---KLIEAAK-----IRAG--SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAII 719
Cdd:PRK11160 450 -LQQVgleKLLEDDKglnawLGEGgrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528
|
250 260 270
....*....|....*....|....*....|..
gi 297797133 720 LTTH---SMEEAdilgDRIGIMAKGRLRCIGT 748
Cdd:PRK11160 529 MITHrltGLEQF----DRICVMDNGQIIEQGT 556
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
548-748 |
1.86e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 80.80 E-value: 1.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNIRKMIGVCPQF-DILWDALSSE 626
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNpETQFVGRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 EHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 297797133 707 DIIQE-SKKGRAIILTTHSMEEADIlGDRIGIMAKGRLRCIGT 748
Cdd:PRK13644 177 ERIKKlHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
535-748 |
4.19e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 80.28 E-value: 4.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 535 LGCCKCTKTS-PFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTG---------------INPVTGGDAIIYGNSIR 598
Cdd:PRK13631 27 LYCVFDEKQEnELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGlikskygtiqvgdiyIGDKKNNHELITNPYSK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSNIRKMIGVC---PQFDILWDALsseEHLHLFASIK-GLPPASIKSIAVKLLADVKLIEAAKIRAG-SYSGGMKR 673
Cdd:PRK13631 107 KIKNFKELRRRVSMVfqfPEYQLFKDTI---EKDIMFGPVAlGVKKSEAKKLAKFYLNKMGLDDSYLERSPfGLSGGQKR 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13631 184 RVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAnNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
564-724 |
5.90e-16 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 82.02 E-value: 5.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQfdilwDAlsseehlHLFAS------IKG 637
Cdd:TIGR02868 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPV-SSLDQDEVRRRVSVCAQ-----DA-------HLFDTtvrenlRLA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASIKSIAvKLLADVKL---IEAAKI--------RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:TIGR02868 433 RPDATDEELW-AALERVGLadwLRALPDgldtvlgeGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELL 511
|
170
....*....|....*...
gi 297797133 707 DIIQESKKGRAIILTTHS 724
Cdd:TIGR02868 512 EDLLAALSGRTVVLITHH 529
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
519-761 |
9.40e-16 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 77.76 E-value: 9.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGnsiR 598
Cdd:cd03296 2 SIEVRNVSKRFGD--------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG---E 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMSNIRKMIGVCPQFDILWdalsseEHLHLFASIK-GL---------PPASIKSIAVKLLADVKLIEAAKIRAGSYS 668
Cdd:cd03296 65 DATDVPVQERNVGFVFQHYALF------RHMTVFDNVAfGLrvkprserpPEAEIRAKVHELLKLVQLDWLADRYPAQLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCI 746
Cdd:cd03296 139 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRlhDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
|
250
....*....|....*....
gi 297797133 747 GTSIRL----KSRFGTGFI 761
Cdd:cd03296 219 GTPDEVydhpASPFVYSFL 237
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
544-748 |
1.20e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 78.52 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFH--AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSN---IRKMIGVCPQFdi 618
Cdd:PRK13634 16 TPFErrALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKlkpLRKKVGIVFQF-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 lwdalssEEHlHLF-ASIK----------GLPPASIKSIAVKLLADVKLIEaaKIRAGS---YSGGMKRRLSVAIALIGD 684
Cdd:PRK13634 94 -------PEH-QLFeETVEkdicfgpmnfGVSEEDAKQKAREMIELVGLPE--ELLARSpfeLSGGQMRRVAIAGVLAME 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKlhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
546-755 |
1.43e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 78.23 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIakdqlfclLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQF-DILWDALS 624
Cdd:PRK13650 28 FHVKQGEWLSI--------IGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL-TEENVWDIRHKIGMVFQNpDNQFVGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH 704
Cdd:PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 705 VWDIIQESKK--GRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGTSIRLKSR 755
Cdd:PRK13650 179 LIKTIKGIRDdyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
541-748 |
1.45e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 77.92 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQF-DIL 619
Cdd:PRK13652 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI-TKENIREVRKFVGLVFQNpDDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDALSSEEHLHLFASIKGLPPASIK---SIAVKLLAdvklIEAAKIRAGSY-SGGMKRRLSVAIALIGDPKLVFLDEPTT 695
Cdd:PRK13652 91 IFSPTVEQDIAFGPINLGLDEETVAhrvSSALHMLG----LEELRDRVPHHlSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 696 GMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13652 167 GLDPQGVKELIDFLNDLPEtyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
548-747 |
1.58e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 80.62 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA-IIYGN-----SIRSSVGMSNIRKMIGVCPQFDILWD 621
Cdd:TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDewvdmTKPGPDGRGRAKRYIGILHQEYDLYP 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 ALSSEEHLHLFASIKgLPPASIKSIAVKLLADVKLIE--AAKI---RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTG 696
Cdd:TIGR03269 379 HRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEekAEEIldkYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 697 MDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:TIGR03269 458 MDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
542-743 |
2.34e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 77.51 E-value: 2.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 542 KTSPFH--AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGG---DAIIYGNSIRSSVgMSNIRKMIGVCPQ 615
Cdd:PRK13646 14 KGTPYEhqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAlLKPTTGTvtvDDITITHKTKDKY-IRPVRKRIGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 F---DILWDALSSEehlHLFASIK-GLPPASIKSIAVKLLADVKLieAAKIRAGS---YSGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK13646 93 FpesQLFEDTVERE---IIFGPKNfKMNLDEVKNYAHRLLMDLGF--SRDVMSQSpfqMSGGQMRKIAIVSILAMNPDII 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSlqTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
541-747 |
2.92e-15 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.83 E-value: 2.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKT-SPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS-------IRSSVGMSNIRKMIGV 612
Cdd:PRK09700 12 GKSfGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkldhkLAAQLGIGIIYQELSV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 613 CpqfdilwDALSSEEHL----HLFASIKGLPP---ASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDP 685
Cdd:PRK09700 92 I-------DELTVLENLyigrHLTKKVCGVNIidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 686 KLVFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKeGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
548-728 |
2.92e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 74.96 E-value: 2.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGdaiiygnSIRSSVGmsnirKMIGVCPQFDILWDAL--SS 625
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSG-------TVRRAGG-----ARVAYVPQRSEVPDSLplTV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EE--HLHLFASIKGL--PPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPIT 701
Cdd:NF040873 75 RDlvAMGRWARRGLWrrLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAES 154
|
170 180
....*....|....*....|....*...
gi 297797133 702 RRHVWDII-QESKKGRAIILTTHSMEEA 728
Cdd:NF040873 155 RERIIALLaEEHARGATVVVVTHDLELV 182
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
569-743 |
4.06e-15 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 74.39 E-value: 4.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 569 GAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvgmsNIRKMI--GVcpqfdilwdALSSEEHLHlfasiKGL-PPASIks 645
Cdd:cd03215 36 GNGQTELAEALFGLRPPASGEITLDGKPVTRR----SPRDAIraGI---------AYVPEDRKR-----EGLvLDLSV-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 646 iavklladvklieAAKIRAGSY-SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTH 723
Cdd:cd03215 96 -------------AENIALSSLlSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRElADAGKAVLLISS 162
|
170 180
....*....|....*....|
gi 297797133 724 SMEEADILGDRIGIMAKGRL 743
Cdd:cd03215 163 ELDELLGLCDRILVMYEGRI 182
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
564-748 |
4.07e-15 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 79.44 E-value: 4.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQfdilwDAlsseehlHLFA-SIK-----G 637
Cdd:COG1132 371 LVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRD-LTLESLRRQIGVVPQ-----DT-------FLFSgTIReniryG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:COG1132 438 RPDAT----------DEEVEEAAKAaqahefiealpdgydtvvgeRGVNLSGGQRQRIAIARALLKDPPILILDEATSAL 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 698 DPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRLRCIGT 748
Cdd:COG1132 508 DTETEALIQEALERLMKGRTTIVIAHrlsTIRNA----DRILVLDDGRIVEQGT 557
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
517-743 |
4.55e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 76.76 E-value: 4.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 517 NIAVQIHGLAKTYPGTTKlgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGI-NPVTGGDAIIYGN 595
Cdd:PRK13640 3 DNIVEFKHVSFTYPDSKK------------PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLlLPDDNPNSKITVD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIR-SSVGMSNIRKMIGVCPQF-DILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKR 673
Cdd:PRK13640 71 GITlTAKTVWDIREKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADiLGDRIGIMAKGRL 743
Cdd:PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKlkKKNNLTVISITHDIDEAN-MADQVLVLDDGKL 221
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
541-754 |
5.24e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 76.59 E-value: 5.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTSPFH--AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVG----MSNIRKMIGVC- 613
Cdd:PRK13645 17 AKKTPFEfkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKkikeVKRLRKEIGLVf 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 614 --PQFDILWDALSSE---EHLHLFAS----IKGLPpasiksiavKLLADVKLIEA-AKIRAGSYSGGMKRRLSVAIALIG 683
Cdd:PRK13645 97 qfPEYQLFQETIEKDiafGPVNLGENkqeaYKKVP---------ELLKLVQLPEDyVKRSPFELSGGQKRRVALAGIIAM 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 684 DPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKS 754
Cdd:PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKeyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
564-743 |
6.15e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 76.29 E-value: 6.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGIN-PVTG----GDAIIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGL 638
Cdd:PRK14271 52 LMGPTGSGKTTFLRTLNRMNdKVSGyrysGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 639 PPASIKSIAVKLLADVKLIEAAKIRAGS----YSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK 714
Cdd:PRK14271 132 PRKEFRGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
|
170 180
....*....|....*....|....*....
gi 297797133 715 GRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK14271 212 RLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
549-743 |
6.21e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 75.72 E-value: 6.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGI-----NPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDAL 623
Cdd:PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDI-FKMDVIELRRRVQMVFQIPNPIPNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 624 SSEEHLHLFASIKGL--PPASIKSIAVKLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:PRK14247 98 SIFENVALGLKLNRLvkSKKELQERVRWALEKAQLWDEVKDRldapAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 297797133 698 DPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK14247 178 DPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
520-743 |
7.89e-15 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 75.25 E-value: 7.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGttKLGCckctktspfhavKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA--IIYGNSI 597
Cdd:TIGR02323 4 LQVSGLSKSYGG--GKGC------------RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAtyIMRSGAE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSN------IRKMIGVCPQ-------FDILWDALSSEEHLHLFASIKGlppaSIKSIAVKLLADVKlIEAAKI-- 662
Cdd:TIGR02323 70 LELYQLSEaerrrlMRTEWGFVHQnprdglrMRVSAGANIGERLMAIGARHYG----NIRATAQDWLEEVE-IDPTRIdd 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 663 RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAK 740
Cdd:TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGlvRDLGLAVIIVTHDLGVARLLAQRLLVMQQ 224
|
...
gi 297797133 741 GRL 743
Cdd:TIGR02323 225 GRV 227
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
554-743 |
8.41e-15 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 75.05 E-value: 8.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS--------------IRSSVGMsnirkmigVCPQFDiL 619
Cdd:COG4161 23 LECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkpsekairlLRQKVGM--------VFQQYN-L 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDALSSEEHLhLFASIK--GLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:COG4161 94 WPHLTVMENL-IEAPCKvlGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 297797133 698 DPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG4161 173 DPEITAQVVEIIRElSQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
546-728 |
1.27e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 75.89 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGIN-PVTGGDAIIYGNS----------------------IRSSVG 602
Cdd:PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLlPDTGTIEWIFKDEknkkktkekekvleklviqktrFKKIKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 603 MSNIRKMIGVCPQF------------DILWDALSSeehlhlfasikGLPPASIKSIAVKLLADVKLIEAAKIRAG-SYSG 669
Cdd:PRK13651 100 IKEIRRRVGVVFQFaeyqlfeqtiekDIIFGPVSM-----------GVSKEEAKKRAAKYIELVGLDESYLQRSPfELSG 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 670 GMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEA 728
Cdd:PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNV 228
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
554-749 |
1.44e-14 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 74.28 E-value: 1.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN--------------SIRSSVGMsnirkmigVCPQFDiL 619
Cdd:PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfdfsktpsdkairELRRNVGM--------VFQQYN-L 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 WDALSSEEHLhLFASIK--GLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:PRK11124 94 WPHLTVQQNL-IEAPCRvlGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 698 DP-ITRRHVwDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:PRK11124 173 DPeITAQIV-SIIRElAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
550-724 |
1.54e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 73.37 E-value: 1.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGG------DAIIYGNSIRSS--VGMSNIRKmigvcpqfdilwD 621
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGtikldgGDIDDPDVAEAChyLGHRNAMK------------P 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 ALSSEEHLHLFASIKGLPPASIksiaVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPIT 701
Cdd:PRK13539 87 ALTVAENLEFWAAFLGGEELDI----AAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
170 180
....*....|....*....|....
gi 297797133 702 RRHVWDIIQE-SKKGRAIILTTHS 724
Cdd:PRK13539 163 VALFAELIRAhLAQGGIVIAATHI 186
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
554-754 |
1.61e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 74.80 E-value: 1.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI--RSSVGMSNIRKMIGVCPQFDILWDALSS------ 625
Cdd:PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpaMSRSRLYTVRKRMSMLFQSGALFTDMNVfdnvay 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 --EEHLHLfasikglPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:PRK11831 108 plREHTQL-------PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 704 HVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRLKS 754
Cdd:PRK11831 181 VLVKLISElnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
548-748 |
1.98e-14 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 73.30 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQ------------ 615
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLRSRISIIPQdpvlfsgtirsn 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 ---FDI-----LWDALsseEHLHLFASIKGLPPasiksiavKLLADVKLieaakiRAGSYSGGMKRRLSVAIALIGDPKL 687
Cdd:cd03244 98 ldpFGEysdeeLWQAL---ERVGLKEFVESLPG--------GLDTVVEE------GGENLSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 688 VFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEadILG-DRIGIMAKGRLRCIGT 748
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT--IIDsDRILVLDKGRVVEFDS 220
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
520-742 |
2.04e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 74.35 E-value: 2.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKT-YPGTTklgcckctktSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI- 597
Cdd:COG1101 2 LELKNLSKTfNPGTV----------NEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVt 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 ------RSS-VGmsniR----KMIGVCPqfdilwdALSSEEHLHLfASIKG----LPPASIKS---IAVKLLADVKL-IE 658
Cdd:COG1101 72 klpeykRAKyIG----RvfqdPMMGTAP-------SMTIEENLAL-AYRRGkrrgLRRGLTKKrreLFRELLATLGLgLE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 659 AA-KIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP--------ITRRhvwdIIQESKkgraiiLT----THSM 725
Cdd:COG1101 140 NRlDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEHTAALDPktaalvleLTEK----IVEENN------LTtlmvTHNM 209
|
250
....*....|....*..
gi 297797133 726 EEADILGDRIGIMAKGR 742
Cdd:COG1101 210 EQALDYGNRLIMMHEGR 226
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
543-743 |
3.14e-14 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 72.53 E-value: 3.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 543 TSPFHavkgLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsvgMSNIRKMIGVCPQFDILWDA 622
Cdd:cd03298 12 EQPMH----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA---APPADRPVSMLFQENNLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 623 LSSEEHLHLfasikGLPPaSIKSIAV------KLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTG 696
Cdd:cd03298 85 LTVEQNVGL-----GLSP-GLKLTAEdrqaieVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 297797133 697 MDPITRRHVWDIIQES--KKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:cd03298 159 LDPALRAEMLDLVLDLhaETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
546-723 |
3.73e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 72.01 E-value: 3.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAkdqlfcllGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMsnirkmigvcPQFDILW----- 620
Cdd:TIGR01189 21 FTLNAGEALQVT--------GPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDE----------PHENILYlghlp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 621 ---DALSSEEHLHLFASIKGLPPASIKSiavkLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:TIGR01189 83 glkPELSALENLHFWAAIHGGAQRTIED----ALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTAL 158
|
170 180 190
....*....|....*....|....*....|....
gi 297797133 698 DP--------ITRRHVwdiiqesKKGRAIILTTH 723
Cdd:TIGR01189 159 DKagvallagLLRAHL-------ARGGIVLLTTH 185
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
544-743 |
3.94e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 74.01 E-value: 3.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFH--AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSV---GMSNIRKMIGVCPQFdi 618
Cdd:PRK13649 16 TPFEgrALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkDIKQIRKKVGLVFQF-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 lwdalsSEEHLHLFASIK---------GLPPASIKSIAVKLLADVKLIEAAKIRAG-SYSGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK13649 94 ------PESQLFEETVLKdvafgpqnfGVSQEEAEALAREKLALVGISESLFEKNPfELSGGQMRRVAIAGILAMEPKIL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
554-748 |
4.01e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 73.03 E-value: 4.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQFDILWDAlsseehlHLFA 633
Cdd:cd03251 23 LDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRD-YTLASLRRQIGLVSQDVFLFND-------TVAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SIK-GLPPASIKSIavklladvklIEAAKI--------------------RAGSYSGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:cd03251 95 NIAyGRPGATREEV----------EEAARAanahefimelpegydtvigeRGVKLSGGQRQRIAIARALLKDPPILILDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 693 PTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRLRCIGT 748
Cdd:cd03251 165 ATSALDTESERLVQAALERLMKNRTTFVIAHrlsTIENA----DRIVVLEDGKIVERGT 219
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
519-748 |
4.16e-14 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 73.19 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTK--------LGCCKCTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA 590
Cdd:COG1134 4 MIEVENVSKSYRLYHEpsrslkelLLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 591 IIYGnSIRSSVGMsnirkMIGVCPQfdilwdaLSSEEHLHLFASIKGLPPASIKsiavKLLADVklIEAAKIRA------ 664
Cdd:COG1134 84 EVNG-RVSALLEL-----GAGFHPE-------LTGRENIYLNGRLLGLSRKEID----EKFDEI--VEFAELGDfidqpv 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 665 GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG1134 145 KTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRElRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
....*
gi 297797133 744 RCIGT 748
Cdd:COG1134 225 VMDGD 229
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
517-742 |
4.52e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 72.47 E-value: 4.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 517 NIAVQIHGLAKTYP----GTTKLgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGdAII 592
Cdd:COG4778 2 TTLLEVENLSKTFTlhlqGGKRL-----------PVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSG-SIL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 593 YgnsiRSSVGMSNI------------RKMIGVCPQF----------DILWDALsseehLHLfasikGLPPASIKSIAVKL 650
Cdd:COG4778 70 V----RHDGGWVDLaqaspreilalrRRTIGYVSQFlrviprvsalDVVAEPL-----LER-----GVDREEARARAREL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 651 LADVKLIEA-AKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEA 728
Cdd:COG4778 136 LARLNLPERlWDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKaRGTAIIGIFHDEEVR 215
|
250
....*....|....
gi 297797133 729 DILGDRIGIMAKGR 742
Cdd:COG4778 216 EAVADRVVDVTPFS 229
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
549-733 |
4.61e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 73.15 E-value: 4.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTG-----GDAIIYGNSI-RSSVGMSNIRKMIG-VCPQFDILwd 621
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyERRVNLNRLRRQVSmVHPKPNLF-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 ALSSEEHLHLFASIKGL-PPASIKSIAVKLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTG 696
Cdd:PRK14258 101 PMSVYDNVAYGVKIVGWrPKLEIDDIVESALKDADLWDEIKHKihksALDLSGGQQQRLCIARALAVKPKVLLMDEPCFG 180
|
170 180 190
....*....|....*....|....*....|....*....
gi 297797133 697 MDPITRRHVWDIIQES--KKGRAIILTTHSMEEADILGD 733
Cdd:PRK14258 181 LDPIASMKVESLIQSLrlRSELTMVIVSHNLHQVSRLSD 219
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
520-748 |
4.93e-14 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 74.98 E-value: 4.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrs 599
Cdd:PRK09452 15 VELRGISKSFDGKE--------------VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 svgmSNI----RKMIGVCPQFdilwdALSSeeHLHLFASI------KGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSG 669
Cdd:PRK09452 79 ----THVpaenRHVNTVFQSY-----ALFP--HMTVFENVafglrmQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 670 GMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ--ESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKalQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
.
gi 297797133 748 T 748
Cdd:PRK09452 228 T 228
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
546-743 |
6.00e-14 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 72.76 E-value: 6.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTG-----GDAIIYGNSIRS-SVGMSNIRKMIGVCPQfdil 619
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDLIPgarveGEILLDGEDIYDpDVDVVELRRRVGMVFQ---- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 wdalsseeHLHLFA-SIK-----GLPPASIKS------IAVKLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIG 683
Cdd:COG1117 100 --------KPNPFPkSIYdnvayGLRLHGIKSkseldeIVEESLRKAALWDEVKDRlkksALGLSGGQQQRLCIARALAV 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 684 DPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG1117 172 EPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
548-742 |
7.49e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 73.99 E-value: 7.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGI---NPVTGGDAIIYG-----------NSIRS-SVGMSNIRKMIGV 612
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLlaaNGRIGGSATFNGreilnlpekelNKLRAeQISMIFQDPMTSL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 613 CPQFDIlWDALSSEEHLHlfasiKGLPPASIKSIAVKLLADVKLIEAAKiRAGSY----SGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK09473 111 NPYMRV-GEQLMEVLMLH-----KGMSKAEAFEESVRMLDAVKMPEARK-RMKMYphefSGGMRQRVMIAMALLCRPKLL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKRefNTAIIMITHDLGVVAGICDKVLVMYAGR 239
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
547-743 |
8.19e-14 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 72.31 E-value: 8.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAV-KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI---RSSVG---------MSNIRKMIGVC 613
Cdd:PRK10619 18 HEVlKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvRDKDGqlkvadknqLRLLRTRLTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 614 PQFDILWDALSSEEHLhLFASIK--GLPPASIKSIAVKLLADVKLIEAAKIRAGSY-SGGMKRRLSVAIALIGDPKLVFL 690
Cdd:PRK10619 98 FQHFNLWSHMTVLENV-MEAPIQvlGLSKQEARERAVKYLAKVGIDERAQGKYPVHlSGGQQQRVSIARALAMEPEVLLF 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 691 DEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK10619 177 DEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
544-748 |
9.75e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 72.84 E-value: 9.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFhAVKGLW---LNIAKDQLFCLLGPNGAGKTTTISCLTGI-NPVTG----GDAIIYGNSIRSSVgmSNIRKMIGVCPQ 615
Cdd:PRK13643 15 SPF-ASRALFdidLEVKKGSYTALIGHTGSGKSTLLQHLNGLlQPTEGkvtvGDIVVSSTSKQKEI--KPVRKKVGVVFQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 F--------DILWDALSSEEHLhlfasikGLPPASIKSIAVKLLADVKLI-EAAKIRAGSYSGGMKRRLSVAIALIGDPK 686
Cdd:PRK13643 92 FpesqlfeeTVLKDVAFGPQNF-------GIPKEKAEKIAAEKLEMVGLAdEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 687 LVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLFESiHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
539-743 |
1.40e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 72.05 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 539 KCTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQF-D 617
Cdd:PRK13642 13 KYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL-TAENVWNLRRKIGMVFQNpD 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ILWDALSSEEHLHLFASIKGLPPAS-IKSIAVKLLA----DVKLIEAAKIragsySGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:PRK13642 92 NQFVGATVEDDVAFGMENQGIPREEmIKRVDEALLAvnmlDFKTREPARL-----SGGQKQRVAVAGIIALRPEIIILDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 693 PTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEAdILGDRIGIMAKGRL 743
Cdd:PRK13642 167 STSMLDPTGRQEIMRVIHEikEKYQLTVLSITHDLDEA-ASSDRILVMKAGEI 218
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
548-743 |
1.71e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 74.23 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQfdilwDAL---- 623
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT-VTRASLRRNIAVVFQ-----DAGlfnr 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 624 SSEEHLHLfasikGLPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSVAIALIG 683
Cdd:PRK13657 424 SIEDNIRV-----GRPDAT----------DEEMRAAAERaqahdfierkpdgydtvvgeRGRQLSGGERQRLAIARALLK 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 684 DPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRL 743
Cdd:PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHrlsTVRNA----DRILVFDNGRV 547
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
542-742 |
2.09e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 70.19 E-value: 2.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 542 KTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGinpvtggdaiiygnSIRSSVGMSNIRKMIGVCPQFDilWd 621
Cdd:cd03250 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--------------ELEKLSGSVSVPGSIAYVSQEP--W- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 alsseehlHLFASIK-----GLP------PASIKSIAvkLLADVKLIEAakiraG----------SYSGGMKRRLSVAIA 680
Cdd:cd03250 77 --------IQNGTIRenilfGKPfdeeryEKVIKACA--LEPDLEILPD-----GdlteigekgiNLSGGQKQRISLARA 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 681 LIGDPKLVFLDEPTTGMDPITRRHVWD--IIQESKKGRAIILTTHSME---EAdilgDRIGIMAKGR 742
Cdd:cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNKTRILVTHQLQllpHA----DQIVVLDNGR 204
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
546-743 |
2.52e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 73.57 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP----VTGGDAIIYG-----------NSIR-SSVGM------ 603
Cdd:COG4172 23 VEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPdpaaHPSGSILFDGqdllglserelRRIRgNRIAMifqepm 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 604 -S-----NIRKMIGvcpqfdilwDALSseehLHlfasiKGLPPASIKSIAVKLLADVKLIEAAKiRAGSY----SGGMKR 673
Cdd:COG4172 103 tSlnplhTIGKQIA---------EVLR----LH-----RGLSGAAARARALELLERVGIPDPER-RLDAYphqlSGGQRQ 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHsmeeaDiLG------DRIGIMAKGRL 743
Cdd:COG4172 164 RVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRelGMALLLITH-----D-LGvvrrfaDRVAVMRQGEI 235
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
560-741 |
2.56e-13 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 74.37 E-value: 2.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 560 QLFCLLGPNGAGKTTTISCL-----TGInpVTGGDAIIYGNSIRSSVGMSnirkmIGVCPQFDILWDALSSEEHLHLFAS 634
Cdd:TIGR00956 790 TLTALMGASGAGKTTLLNVLaervtTGV--ITGGDRLVNGRPLDSSFQRS-----IGYVQQQDLHLPTSTVRESLRFSAY 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 635 IKglPPASIkSIA---------VKLLADVKLIEAAKIRAGS-YSGGMKRRLSVAIALIGDPK-LVFLDEPTTGMDPITrr 703
Cdd:TIGR00956 863 LR--QPKSV-SKSekmeyveevIKLLEMESYADAVVGVPGEgLNVEQRKRLTIGVELVAKPKlLLFLDEPTSGLDSQT-- 937
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 297797133 704 hVWDIIQESKK----GRAIILTTHSmEEADILG--DRIGIMAKG 741
Cdd:TIGR00956 938 -AWSICKLMRKladhGQAILCTIHQ-PSAILFEefDRLLLLQKG 979
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
519-743 |
2.63e-13 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 70.93 E-value: 2.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGTTKLgcckctktspfhavKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR 598
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVL--------------HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITID 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 SSVGMS-------NIRKMIG-VCPQFDILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGG 670
Cdd:PRK11264 69 TARSLSqqkglirQLRQHVGfVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 671 MKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII-QESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIrQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
549-749 |
2.64e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 70.85 E-value: 2.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPV------TGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDA 622
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIydskikVDGKVLYFGKDI-FQIDAIKLRKEVGMVFQQPNPFPH 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 623 LSSEEHLHLFASIKGLPPA-SIKSIAVKLLADVKLIEAAKIR----AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:PRK14246 105 LSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLWKEVYDRlnspASQLSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 698 DPITRRHVWDIIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:PRK14246 185 DIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
643-742 |
2.77e-13 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 70.73 E-value: 2.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 643 IKSIAVKLLADVKlIEAAKI--RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAI 718
Cdd:PRK11701 127 IRATAGDWLERVE-IDAARIddLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAV 205
|
90 100
....*....|....*....|....
gi 297797133 719 ILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK11701 206 VIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
550-758 |
3.43e-13 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 70.26 E-value: 3.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsVGMSNIRKMIGVCPQFDILWDAlsseehl 629
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRD-LNLRWLRSQIGLVSQEPVLFDG------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 630 hlfaSIK-----GLPPASiksiavkllaDVKLIEAAKI--------------------RAGSYSGGMKRRLSVAIALIGD 684
Cdd:cd03249 92 ----TIAeniryGKPDAT----------DEEVEEAAKKanihdfimslpdgydtlvgeRGSQLSGGQKQRIAIARALLRN 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRLRCIGTSIRLKSRFGT 758
Cdd:cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHrlsTIRNA----DLIAVLQNGQVVEQGTHDELMAQKGV 230
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
544-743 |
4.10e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 71.01 E-value: 4.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 544 SPFHAvKGL---WLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSN---IRKMIGVCPQFd 617
Cdd:PRK13641 16 TPMEK-KGLdniSFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNlkkLRKKVSLVFQF- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ilwdalsSEEHLHLFASIK---------GLPPASIKSIAVKLLADVKLIEAAKIRAG-SYSGGMKRRLSVAIALIGDPKL 687
Cdd:PRK13641 94 -------PEAQLFENTVLKdvefgpknfGFSEDEAKEKALKWLKKVGLSEDLISKSPfELSGGQMRRVAIAGVMAYEPEI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 688 VFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK13641 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKaGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
549-748 |
6.05e-13 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 69.66 E-value: 6.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDI---------- 618
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI-SMLSSRQLARRLALLPQHHLtpegitvrel 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 ----------LWDALSSEEHlhlfasikglppasikSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK11231 97 vaygrspwlsLWGRLSAEDN----------------ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK11231 161 LLDEPTTYLDINHQVELMRLMRElNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
520-748 |
6.20e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 70.43 E-value: 6.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLGcckcTKTSPFHAVKGLWLNIakdqlfclLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSIRS 599
Cdd:PRK13635 6 IRVEHISFRYPDAATYA----LKDVSFSVYEGEWVAI--------VGHNGSGKSTLAKLLNGLLLPEAGT-ITVGGMVLS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SVGMSNIRKMIGVC---P--QF-------DIlwdALSSEEHlhlfasikGLP-PASIKSI--AVKLladVKLIEAAKIRA 664
Cdd:PRK13635 73 EETVWDVRRQVGMVfqnPdnQFvgatvqdDV---AFGLENI--------GVPrEEMVERVdqALRQ---VGMEDFLNREP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 665 GSYSGGMKRRlsVAIA--LIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAI--ILTTHSMEEAdILGDRIGIMAK 740
Cdd:PRK13635 139 HRLSGGQKQR--VAIAgvLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGItvLSITHDLDEA-AQADRVIVMNK 215
|
....*...
gi 297797133 741 GRLRCIGT 748
Cdd:PRK13635 216 GEILEEGT 223
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
551-723 |
6.53e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 68.67 E-value: 6.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 551 GLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGmSNIRKMIGVCPQfDILWDALSSEEHLH 630
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD-SIARGLLYLGHA-PGIKTTLSVLENLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 631 LFASIKGlppasiKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPIT-RRHVWDII 709
Cdd:cd03231 96 FWHADHS------DEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGvARFAEAMA 169
|
170
....*....|....
gi 297797133 710 QESKKGRAIILTTH 723
Cdd:cd03231 170 GHCARGGMVVLTTH 183
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
519-748 |
6.81e-13 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 72.37 E-value: 6.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 519 AVQIHGLAKTYPGttklgcckctktspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN--S 596
Cdd:COG3845 5 ALELRGITKRFGG--------------VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 597 IRSSvgMSNIRKMIGVCPQ-FdILWDALSSEEHLHLFASIKGLPPASIKSIAVKLLA-------DVKLieAAKIraGSYS 668
Cdd:COG3845 71 IRSP--RDAIALGIGMVHQhF-MLVPNLTVAENIVLGLEPTKGGRLDRKAARARIRElseryglDVDP--DAKV--EDLS 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 669 GGMKRRlsVAI--ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLrc 745
Cdd:COG3845 144 VGEQQR--VEIlkALYRGARILILDEPTAVLTPQEADELFEILRRlAAEGKSIIFITHKLREVMAIADRVTVLRRGKV-- 219
|
...
gi 297797133 746 IGT 748
Cdd:COG3845 220 VGT 222
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
510-743 |
8.86e-13 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 69.00 E-value: 8.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 510 MDGIVDPniAVQIHGLAKTYPgttklgcckcTKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGD 589
Cdd:COG4181 1 MSSSSAP--IIELRGLTKTVG----------TGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGT 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 590 AIIYGNSI-----------RssvgmsniRKMIGVCPQ-FDILwDALSSEEHLHLFASIKGLPPAsiKSIAVKLLADVKLI 657
Cdd:COG4181 69 VRLAGQDLfaldedararlR--------ARHVGFVFQsFQLL-PTLTALENVMLPLELAGRRDA--RARARALLERVGLG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 658 EaakiRAGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII----QESkkGRAIILTTHSMEEAD 729
Cdd:COG4181 138 H----RLDHYpaqlSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLfelnRER--GTTLVLVTHDPALAA 211
|
250
....*....|....
gi 297797133 730 iLGDRIGIMAKGRL 743
Cdd:COG4181 212 -RCDRVLRLRAGRL 224
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
515-748 |
1.12e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 71.70 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 515 DPNIAVQIHGLAKTYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG 594
Cdd:COG4618 326 RPKGRLSVENLTVVPPGSKRP------------ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDG 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 595 NSI----RSSVGmsnirKMIGVCPQfDIlwdalsseehlHLFasikglpPASIKS-IAvkLLADV---KLIEAAKiRAG- 665
Cdd:COG4618 394 ADLsqwdREELG-----RHIGYLPQ-DV-----------ELF-------DGTIAEnIA--RFGDAdpeKVVAAAK-LAGv 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 666 ---------SY-----------SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK-GRAIILTTHS 724
Cdd:COG4618 447 hemilrlpdGYdtrigeggarlSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKArGATVVVITHR 526
|
250 260
....*....|....*....|....*.
gi 297797133 725 MEeadILG--DRIGIMAKGRLRCIGT 748
Cdd:COG4618 527 PS---LLAavDKLLVLRDGRVQAFGP 549
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
548-743 |
1.15e-12 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 68.55 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP---------VTGGDAIIYGNSIRS---SVGMSNIRKMIGvcPQ 615
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPpgltqtsgeILLDGRPLLPLSIRGrhiATIMQNPRTAFN--PL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 FDIlwdalsseeHLHLFASIK--GLPPASIKSIAVKLLADVKLIEAAKIRAgSY----SGGMKRRLSVAIALIGDPKLVF 689
Cdd:TIGR02770 79 FTM---------GNHAIETLRslGKLSKQARALILEALEAVGLPDPEEVLK-KYpfqlSGGMLQRVMIALALLLEPPFLI 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 690 LDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:TIGR02770 149 ADEPTTDLDVVNQARVLKLLRElrQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
564-748 |
1.31e-12 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 70.14 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYG---NSIRSSVGMSNIRKMIGVCPQFDILWDALSSEEHLhLFASIKGLPP 640
Cdd:TIGR02142 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL-RYGMKRARPS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 641 ASIKSIA--VKLLADVKLIEAakiRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGR 716
Cdd:TIGR02142 107 ERRISFErvIELLGIGHLLGR---LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERlhAEFGI 183
|
170 180 190
....*....|....*....|....*....|..
gi 297797133 717 AIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:TIGR02142 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
546-749 |
1.37e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 68.89 E-value: 1.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKglwLNIAKDQLFCLLGPNGAGKTTTISCLTGInpVTGGDAI-----IYGNSIRSSVGMS-NIRKMIG----VCPQ 615
Cdd:PRK09984 20 LHAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGL--ITGDKSAgshieLLGRTVQREGRLArDIRKSRAntgyIFQQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 FDILwDALSSEEHLhLFASIKGLP---------PASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPK 686
Cdd:PRK09984 95 FNLV-NRLSVLENV-LIGALGSTPfwrtcfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 687 LVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:PRK09984 173 VILADEPIASLDPESARIVMDTLRDinQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
554-761 |
1.38e-12 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 70.13 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-RSSVGMSNIrkmigvCPQFD--ILWDALSSEEHLH 630
Cdd:PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVtHRSIQQRDI------CMVFQsyALFPHMSLGENVG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 631 LFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ 710
Cdd:PRK11432 101 YGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 711 ESKKGRAI--ILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRL----KSRFGTGFI 761
Cdd:PRK11432 181 ELQQQFNItsLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyrqpASRFMASFM 237
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
546-723 |
1.73e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 67.68 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGInpvtggdaiiygnsirssvgmsniRKMIGVCPQFDILWDALSS 625
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGA------------------------LKGTPVAGCVDVPDNQFGR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLhlfasIKGLPPASIKSIAVKLLADVKLIEAAKIRA--GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:COG2401 99 EASL-----IDAIGRKGDFKDAVELLNAVGLSDAVLWLRrfKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAK 173
|
170 180
....*....|....*....|..
gi 297797133 704 HVWDIIQE--SKKGRAIILTTH 723
Cdd:COG2401 174 RVARNLQKlaRRAGITLVVATH 195
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
569-743 |
2.07e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 70.43 E-value: 2.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 569 GAGKTTTISCLTGINPVTGGDAIIYG-----NSIRSSV--GMSNI---RKMIGVCPQFDILWD-ALSSeehLHLFASIKG 637
Cdd:COG1129 288 GAGRTELARALFGADPADSGEIRLDGkpvriRSPRDAIraGIAYVpedRKGEGLVLDLSIRENiTLAS---LDRLSRGGL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASIKSIAVKLLADVKlIEAAKI--RAGSYSGGM--KrrlsVAIA--LIGDPKLVFLDEPTTGMDPITRRHVWDIIQE 711
Cdd:COG1129 365 LDRRRERALAEEYIKRLR-IKTPSPeqPVGNLSGGNqqK----VVLAkwLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 439
|
170 180 190
....*....|....*....|....*....|....*
gi 297797133 712 -SKKGRAIILTTHSMEEadILG--DRIGIMAKGRL 743
Cdd:COG1129 440 lAAEGKAVIVISSELPE--LLGlsDRILVMREGRI 472
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
554-748 |
2.44e-12 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 69.34 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRssvGMSNIRKMIGVCPQFDILWdalsseEHLHLFA 633
Cdd:PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS---RLHARDRKVGFVFQHYALF------RHMTVFD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SI----KGLP------PASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:PRK10851 94 NIafglTVLPrrerpnAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 297797133 704 HV--W--DIIQESKkgRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK10851 174 ELrrWlrQLHEELK--FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
549-747 |
7.27e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 65.63 E-value: 7.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGiNP---VTGGDAIIYGNSI-------RSsvgmsniRKMIGVCPQFdi 618
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDItdlppeeRA-------RLGIFLAFQY-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 lwdalsseehlhlfasikglpPASIKSIAVK-LLADVKLieaakiragSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGM 697
Cdd:cd03217 86 ---------------------PPEIPGVKNAdFLRYVNE---------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 698 DPITRRHVWDIIQE-SKKGRAIILTTHSMEEAD-ILGDRIGIMAKGRLRCIG 747
Cdd:cd03217 136 DIDALRLVAEVINKlREEGKSVLIITHYQRLLDyIKPDRVHVLYDGRIVKSG 187
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
549-747 |
9.82e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 66.57 E-value: 9.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR-SSVGMSNIRKMIGVC---PQFDILWDALS 624
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDySKRGLLALRQQVATVfqdPEQQIFYTDID 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEehlhLFASIKGLPPASiKSIAVKLLADVKLIEAAKIRAGS---YSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPIT 701
Cdd:PRK13638 97 SD----IAFSLRNLGVPE-AEITRRVDEALTLVDAQHFRHQPiqcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 297797133 702 RRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK13638 172 RTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
516-743 |
1.71e-11 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 65.47 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 516 PNIAVQIHGLAKTYPGTTKLgcckctktspfhavKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGN 595
Cdd:PRK11247 9 QGTPLLLNAVSKRYGERTVL--------------NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIRSSVgMSNIRKMigvcpqfdilwdalsseehlhlFASIKGLPPASI------------KSIAVKLLADVKLIEAAKIR 663
Cdd:PRK11247 74 APLAEA-REDTRLM----------------------FQDARLLPWKKVidnvglglkgqwRDAALQALAAVGLADRANEW 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 664 AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKG 741
Cdd:PRK11247 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESlwQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210
|
..
gi 297797133 742 RL 743
Cdd:PRK11247 211 KI 212
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
549-743 |
2.02e-11 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 65.11 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP----VTGGDAIIYGnsirSSVGMSNIR-KMIGVcpqfdILWDAL 623
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPagvrQTAGRVLLDG----KPVAPCALRgRKIAT-----IMQNPR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 624 SSEEHLHLFAS-------IKGLPPASIKSIAVklLADVKLIEAAKIrAGSY----SGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:PRK10418 90 SAFNPLHTMHTharetclALGKPADDATLTAA--LEAVGLENAARV-LKLYpfemSGGMLQRMMIALALLCEAPFIIADE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 297797133 693 PTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK10418 167 PTTDLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
554-757 |
2.23e-11 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 64.81 E-value: 2.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDAlSSEEHLHLfa 633
Cdd:cd03252 23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL-ALADPAWLRRQVGVVLQENVLFNR-SIRDNIAL-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 sikGLPPASI-KSIAVKLLADV-----KLIEAAKI----RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:cd03252 99 ---ADPGMSMeRVIEAAKLAGAhdfisELPEGYDTivgeQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 704 HVWDIIQESKKGRAIILTTHSMeEADILGDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:cd03252 176 AIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
543-743 |
3.14e-11 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 64.03 E-value: 3.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 543 TSPFHAV-KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWd 621
Cdd:cd03248 23 TRPDTLVlQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-SQYEHKYLHSKVSLVGQEPVLF- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 622 ALSSEEHLHLfaSIKGLPPASIKSIAVKLLADVKLIEAAK-------IRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPT 694
Cdd:cd03248 101 ARSLQDNIAY--GLQSCSFECVKEAAQKAHAHSFISELASgydtevgEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 297797133 695 TGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMAKGRL 743
Cdd:cd03248 179 SALDAESEQQVQQALYDWPERRTVLVIAHrlsTVERA----DQILVLDGGRI 226
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
566-723 |
1.16e-10 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 62.13 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 566 GPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSsvgmsnirkmigVCPQF--DILW--------DALSSEEHLHLFASI 635
Cdd:PRK13538 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR------------QRDEYhqDLLYlghqpgikTELTALENLRFYQRL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 636 KGLPPAsikSIAVKLLADVKLIEAAKIRAGSYSGGMKRRlsVAIA--LIGDPKLVFLDEPTT-----GMDPITRRhvwdI 708
Cdd:PRK13538 102 HGPGDD---EALWEALAQVGLAGFEDVPVRQLSAGQQRR--VALArlWLTRAPLWILDEPFTaidkqGVARLEAL----L 172
|
170
....*....|....*
gi 297797133 709 IQESKKGRAIILTTH 723
Cdd:PRK13538 173 AQHAEQGGMVILTTH 187
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
564-748 |
1.25e-10 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 62.87 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRkmiGVCPQFDILWDALSSEEHLHLFASIKGLPPA 641
Cdd:PRK13548 33 ILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwSPAELARRR---AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 642 SIKSIAVKLLADVKLIEAAKiRagSY---SGGMKRRLSVAIALI------GDPKLVFLDEPTTGMDPITRRHVWDIIQE- 711
Cdd:PRK13548 110 EDDALVAAALAQVDLAHLAG-R--DYpqlSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQl 186
|
170 180 190
....*....|....*....|....*....|....*...
gi 297797133 712 -SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:PRK13548 187 aHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
551-728 |
1.35e-10 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 62.49 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 551 GLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS--SVGMSNIR-KMIGVCPQFDILWDALSSEE 627
Cdd:PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdEEARAKLRaKHVGFVFQSFMLIPTLNALE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWD 707
Cdd:PRK10584 108 NVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
|
170 180
....*....|....*....|...
gi 297797133 708 IIQESKKGRA--IILTTHSMEEA 728
Cdd:PRK10584 188 LLFSLNREHGttLILVTHDLQLA 210
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
550-742 |
1.82e-10 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 62.39 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGiNP---VTGGDAIIYGNSI-------RSsvgmsniRKMIGVCPQ---- 615
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG-HPkyeVTSGSILLDGEDIlelspdeRA-------RAGIFLAFQypve 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 ------FDILWDALSS--EEHLHLFASIKglppasiksIAVKLLADVKLIEAAKIRA--GSYSGGMKRRLSVAIALIGDP 685
Cdd:COG0396 89 ipgvsvSNFLRTALNArrGEELSAREFLK---------LLKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEILQMLLLEP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 686 KLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEeadILG----DRIGIMAKGR 742
Cdd:COG0396 160 KLAILDETDSGLDIDALRIVAEGVNKlRSPDRGILIITHYQR---ILDyikpDFVHVLVDGR 218
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
560-748 |
2.43e-10 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 62.06 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 560 QLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRkmiGVCPQ-----FdilwdALSSEEhlhlF 632
Cdd:COG4559 28 ELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAawSPWELARRR---AVLPQhsslaF-----PFTVEE----V 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 633 ASIKGLPPASIKSiavkllADVKLIEAAKIRAG-------SY---SGGMKRRLSVAIALI-------GDPKLVFLDEPTT 695
Cdd:COG4559 96 VALGRAPHGSSAA------QDRQIVREALALVGlahlagrSYqtlSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 696 GMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:COG4559 170 ALDLAHQHAVLRLARQlARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGT 223
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
520-757 |
2.57e-10 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 63.97 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKlgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:TIGR02203 331 VEFRNVTFRYPGRDR------------PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 sVGMSNIRKMIGVCPQfdilwdalsseeHLHLF----------ASIKGLPPASIKSIAVKL-LADV--KLIEAAKIRAGS 666
Cdd:TIGR02203 399 -YTLASLRRQVALVSQ------------DVVLFndtianniayGRTEQADRAEIERALAAAyAQDFvdKLPLGLDTPIGE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 667 ----YSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAdilgDRIGIMA 739
Cdd:TIGR02203 466 ngvlLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHrlsTIEKA----DRIVVMD 541
|
250
....*....|....*...
gi 297797133 740 KGRLRCIGTSIRLKSRFG 757
Cdd:TIGR02203 542 DGRIVERGTHNELLARNG 559
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
554-761 |
4.13e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 62.74 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIyGNSIRSSVGMSNirKMIGVCPQFDILWDALSSEEHLHLfa 633
Cdd:PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE--RGVGMVFQSYALYPHLSVAENMSF-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 sikGLPPASIKsiavKLLADVKLIEAAKI---------RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP----- 699
Cdd:PRK11000 99 ---GLKLAGAK----KEEINQRVNQVAEVlqlahlldrKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAalrvq 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 700 ----ITRRHvwdiiqeSKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTSIRL----KSRFGTGFI 761
Cdd:PRK11000 172 mrieISRLH-------KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGFI 234
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
560-772 |
5.26e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 63.36 E-value: 5.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 560 QLFCLLGPNGAGKTTTISCLTGInpvtggdaiIYGNSIRSSVGMSN------IRKMIGVCPQFDILWDALSSEEHLhLFA 633
Cdd:PLN03211 95 EILAVLGPSGSGKSTLLNALAGR---------IQGNNFTGTILANNrkptkqILKRTGFVTQDDILYPHLTVRETL-VFC 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SIKGLPPASIK----SIAVKLLADVKLIEAAKIRAGS-----YSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITR-R 703
Cdd:PLN03211 165 SLLRLPKSLTKqekiLVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAyR 244
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 704 HVWDIIQESKKGRAIILTTHS-MEEADILGDRIGIMAKGRLRCIGTSIRLKSRFGT-GFitTVSFPENKKD 772
Cdd:PLN03211 245 LVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESvGF--SPSFPMNPAD 313
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
549-728 |
7.19e-10 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 59.80 E-value: 7.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINP---VTGGDAIIYGNSIRssvGMSNIRKMIGVCPQFDILWDALSS 625
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSpafSASGEVLLNGRRLT---ALPAEQRRIGILFQDDLLFPHLSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHLhLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITR--- 702
Cdd:COG4136 94 GENL-AFALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRaqf 172
|
170 180
....*....|....*....|....*....
gi 297797133 703 RH-VWDIIQEskkgRAI--ILTTHSMEEA 728
Cdd:COG4136 173 REfVFEQIRQ----RGIpaLLVTHDEEDA 197
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
546-772 |
8.42e-10 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 62.51 E-value: 8.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGIN---PVTGgdAIIYGNSIRSSVGMSNIRKMIGV-CP------- 614
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyePTSG--RIIYHVALCEKCGYVERPSKVGEpCPvcggtle 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 615 QFDI-LWD---------------------ALSSEEHLhLFASIKGLPPASIKS-----IAVKLLADVKLIEAAKIRAGSY 667
Cdd:TIGR03269 91 PEEVdFWNlsdklrrrirkriaimlqrtfALYGDDTV-LDNVLEALEEIGYEGkeavgRAVDLIEMVQLSHRITHIARDL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQES--KKGRAIILTTHSMEEADILGDRIGIMAKGRLRC 745
Cdd:TIGR03269 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvkASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
|
250 260
....*....|....*....|....*..
gi 297797133 746 IGTSIRLKSRfgtgFITTVSFPENKKD 772
Cdd:TIGR03269 250 EGTPDEVVAV----FMEGVSEVEKECE 272
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
564-741 |
1.26e-09 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 60.28 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSnirkMIGVCPQ-------FDILW-DALSSEEHLHLfaSI 635
Cdd:PRK15056 38 LVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKN----LVAYVPQseevdwsFPVLVeDVVMMGRYGHM--GW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 636 KGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-K 714
Cdd:PRK15056 112 LRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRdE 191
|
170 180
....*....|....*....|....*..
gi 297797133 715 GRAIILTTHSMEEADILGDRIgIMAKG 741
Cdd:PRK15056 192 GKTMLVSTHNLGSVTEFCDYT-VMVKG 217
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
520-742 |
2.25e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.99 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIY--GNSI 597
Cdd:TIGR02633 2 LEMKGIVKTFGGVK--------------ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYwsGSPL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKgLP------PASIKSiAVKLLADVKLIEAAKIRA-GSYSGG 670
Cdd:TIGR02633 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEIT-LPggrmayNAMYLR-AKNLLRELQLDADNVTRPvGDYGGG 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 671 MKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKaHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
223-441 |
3.98e-09 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 59.33 E-value: 3.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 223 TTSAFYLMGPVFFLAFSMFGFVLQLGSVVTEKELKLREAMTTMGVYDSAYWLSWLLWEGILTFVSSLFLVLFgmMFQFDF 302
Cdd:pfam12698 156 QSGYAYYLVGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLIILLL--LFGIGI 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 303 FLKNSFVLVFLLFFLFqFNMIGLAFALSSIISKSSSATTVGFLVFLVGFITQIVTatgFPYSSSYSiGSRVIWSLFPPNT 382
Cdd:pfam12698 234 PFGNLGLLLLLFLLYG-LAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGL---FPLEDPPS-FLQWIFSIIPFFS 308
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 383 FSAGLQLLLeatsspgdSGISWSEraicaggestcIITTnkiYIWLVGTFFFWFVLALY 441
Cdd:pfam12698 309 PIDGLLRLI--------YGDSLWE-----------IAPS---LIILLLFAVVLLLLALL 345
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
521-741 |
4.12e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.02 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI--- 597
Cdd:PRK10762 6 QLKGIDKAFPGV--------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVtfn 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 --RSS--VGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGlppASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKR 673
Cdd:PRK10762 72 gpKSSqeAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDW---KKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 674 RLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKG 741
Cdd:PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKsQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
549-774 |
7.12e-09 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 59.08 E-value: 7.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTG-----GDAIiygnsirSSVGMSNIRKMIGVCPQ-----FD 617
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGtLTPTAGtvlvaGDDV-------EALSARAASRRVASVPQdtslsFE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ILWDA---LSSEEHLHLFASIKGlppasiksiavkllADVKLIEAAKIRAG----------SYSGGMKRRLSVAIALIGD 684
Cdd:PRK09536 92 FDVRQvveMGRTPHRSRFDTWTE--------------TDRAAVERAMERTGvaqfadrpvtSLSGGERQRVLLARALAQA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG------TSIRLKSRFG 757
Cdd:PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRlVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGppadvlTADTLRAAFD 237
|
250 260
....*....|....*....|....*..
gi 297797133 758 ----------TGFITTVSFPENKKDSA 774
Cdd:PRK09536 238 artavgtdpaTGAPTVTPLPDPDRTEA 264
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
569-743 |
1.13e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 58.86 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 569 GAGKTTTISCLTGINPVTGGDAIIYGNSI--RSS--------VGMSNIRKMIGVcpqfdILwdALSSEEHLHL-----FA 633
Cdd:PRK10762 288 GAGRTELMKVLYGALPRTSGYVTLDGHEVvtRSPqdglangiVYISEDRKRDGL-----VL--GMSVKENMSLtalryFS 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SIKGlppaSIKSIAVKLLADvKLIEAAKIRA-------GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:PRK10762 361 RAGG----SLKHADEQQAVS-DFIRLFNIKTpsmeqaiGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 297797133 707 DIIQESKK-GRAIILTTHSMEEadILG--DRIGIMAKGRL 743
Cdd:PRK10762 436 QLINQFKAeGLSIILVSSEMPE--VLGmsDRILVMHEGRI 473
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
546-746 |
2.13e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.82 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGLWLNIAkdqlfcllGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNI----------RKMIGVCPQ 615
Cdd:PRK10982 269 FDLHKGEILGIA--------GLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAInhgfalvteeRRSTGIYAY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 FDILWDALSSEEHLHLfASIKGLPPASIKSiavkllaDVK-LIEAAKIRA-------GSYSGGMKRRLSVAIALIGDPKL 687
Cdd:PRK10982 341 LDIGFNSLISNIRNYK-NKVGLLDNSRMKS-------DTQwVIDSMRVKTpghrtqiGSLSGGNQQKVIIGRWLLTQPEI 412
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 297797133 688 VFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEadILG--DRIGIMAKGRLRCI 746
Cdd:PRK10982 413 LMLDEPTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPE--LLGitDRILVMSNGLVAGI 472
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
541-748 |
2.28e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 57.63 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTspFHAVK---GLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVT--GGDAIIYGNSIRSSvgmsNIR----KMIG 611
Cdd:PRK13549 12 TKT--FGGVKaldNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGtyEGEIIFEGEELQAS----NIRdterAGIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 612 VCPQFDILWDALSSEEHLHLFASI-KG--LPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLV 688
Cdd:PRK13549 86 IIHQELALVKELSVLENIFLGNEItPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 689 FLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRLrcIGT 748
Cdd:PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKaHGIACIYISHKLNEVKAISDTICVIRDGRH--IGT 224
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
664-743 |
2.85e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 57.37 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 664 AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480
|
.
gi 297797133 743 L 743
Cdd:PRK15439 481 I 481
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
516-703 |
2.89e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 57.38 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 516 PNIAVQIHGLAKTYPGTTKLgcckctktspfhavKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGN 595
Cdd:COG0488 312 GKKVLELEGLSKSYGDKTLL--------------DDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 SIRssvgmsnirkmIGVCPQ-FDILWDALSSEEHLHLFAsiKGLPPASIKSIAVKLL---ADV-KLIeaakiraGSYSGG 670
Cdd:COG0488 377 TVK-----------IGYFDQhQEELDPDKTVLDELRDGA--PGGTEQEVRGYLGRFLfsgDDAfKPV-------GVLSGG 436
|
170 180 190
....*....|....*....|....*....|...
gi 297797133 671 MKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:COG0488 437 EKARLALAKLLLSPPNVLLLDEPTNHLDIETLE 469
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
554-723 |
3.28e-08 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 53.22 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGgdAIIYGNSIRssvgmsnirkmIGVCPQFdilwdalsseehlhlf 632
Cdd:cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGeLEPDEG--IVTWGSTVK-----------IGYFEQL---------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 633 asikglppasiksiavklladvklieaakiragsySGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQES 712
Cdd:cd03221 72 -----------------------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116
|
170
....*....|.
gi 297797133 713 KkgRAIILTTH 723
Cdd:cd03221 117 P--GTVILVSH 125
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
569-744 |
3.67e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 57.25 E-value: 3.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 569 GAGKTTTISCLTGINP-VTGGDAIIYG---------NSIRSSVGM-SNIRKMIGVCPQFDILWD-ALSSeehLHLFASIK 636
Cdd:PRK13549 298 GAGRTELVQCLFGAYPgRWEGEIFIDGkpvkirnpqQAIAQGIAMvPEDRKRDGIVPVMGVGKNiTLAA---LDRFTGGS 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 637 GLPPASIKSIAVKLLADVKLIEA-AKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII-QESKK 714
Cdd:PRK13549 375 RIDDAAELKTILESIQRLKVKTAsPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLInQLVQQ 454
|
170 180 190
....*....|....*....|....*....|..
gi 297797133 715 GRAIILTthSMEEADILG--DRIGIMAKGRLR 744
Cdd:PRK13549 455 GVAIIVI--SSELPEVLGlsDRVLVMHEGKLK 484
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
551-769 |
4.32e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.29 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 551 GLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILW--------DA 622
Cdd:PLN03232 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV-AKFGLTDLRRVLSIIPQSPVLFsgtvrfniDP 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 623 LSSEEHLHLFasiKGLPPASIKSIAVK--LLADVKLIEAAKiragSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPI 700
Cdd:PLN03232 1333 FSEHNDADLW---EALERAHIKDVIDRnpFGLDAEVSEGGE----NFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 701 TRRHVWDIIQESKKGRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGTSIRLKSRFGTGFITTV--SFPEN 769
Cdd:PLN03232 1406 TDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVhsTGPAN 1475
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
550-757 |
4.49e-08 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 57.04 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDALSSEEHL 629
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL-VQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 630 HlfaSIKGLPPASIKSIAVKLLADVKLIEAAKI------RAGSY-SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITR 702
Cdd:TIGR00958 577 Y---GLTDTPDEEIMAAAKAANAHDFIMEFPNGydtevgEKGSQlSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 703 RHVwdiiQESK--KGRAIILTTHSM---EEAdilgDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:TIGR00958 654 QLL----QESRsrASRTVLLIAHRLstvERA----DQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
554-757 |
4.58e-08 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 57.06 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILWDAlSSEEHLHLFA 633
Cdd:TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGA 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SikglPPASIKSI--AVKLLADVKLIEAAKI--------RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:TIGR01193 573 K----ENVSQDEIwaACEIAEIKDDIENMPLgyqtelseEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 704 HVWDIIQESKKgRAIILTTHSMEEADiLGDRIGIMAKGRLRCIGTSIRLKSRFG 757
Cdd:TIGR01193 649 KIVNNLLNLQD-KTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
563-694 |
5.25e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 56.61 E-value: 5.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 563 CLLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSIRssvgmsnirkmIGVCPQ-----------------FDILWDALSS 625
Cdd:COG0488 28 GLVGRNGAGKSTLLKILAGELEPDSGE-VSIPKGLR-----------IGYLPQeppldddltvldtvldgDAELRALEAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 626 EEHL------------------HLFASIKG-LPPASIKSIAVKL-LADVKLieAAKIraGSYSGGMKRRLSVAIALIGDP 685
Cdd:COG0488 96 LEELeaklaepdedlerlaelqEEFEALGGwEAEARAEEILSGLgFPEEDL--DRPV--SELSGGWRRRVALARALLSEP 171
|
....*....
gi 297797133 686 KLVFLDEPT 694
Cdd:COG0488 172 DLLLLDEPT 180
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
548-743 |
5.73e-08 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 56.57 E-value: 5.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI-RSSV------GMSNI---RKMIGVCPQFD 617
Cdd:COG3845 273 ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDItGLSPrerrrlGVAYIpedRLGRGLVPDMS 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 IlWDALSSEEHlhlfasikGLPPAS----IKSIAVKLLADvKLIEAAKIR-------AGSYSGGMKRRLSVAIALIGDPK 686
Cdd:COG3845 353 V-AENLILGRY--------RRPPFSrggfLDRKAIRAFAE-ELIEEFDVRtpgpdtpARSLSGGNQQKVILARELSRDPK 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 687 LVFLDEPTTGMDPITRRHVWD-IIQESKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:COG3845 423 LLIAAQPTRGLDVGAIEFIHQrLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
549-749 |
5.81e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 56.33 E-value: 5.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN--SIRSSV-----GMSNI---RKMIGVCPQFDI 618
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKdiSPRSPLdavkkGMAYItesRRDNGFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 LWD-ALSSEEHLHLFASIKGL-PPASIKSIAVKLLADVKlIEAAKIRA--GSYSGGMKRRLSVAIALIGDPKLVFLDEPT 694
Cdd:PRK09700 359 AQNmAISRSLKDGGYKGAMGLfHEVDEQRTAENQRELLA-LKCHSVNQniTELSGGNQQKVLISKWLCCCPEVIIFDEPT 437
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 695 TGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:PRK09700 438 RGIDVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
569-744 |
6.28e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 56.37 E-value: 6.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 569 GAGKTTTISCLTGINP-VTGGDAIIYG---------NSIRSSVGM-SNIRKMIGVCPQF----DILWDALSSeehlhlFA 633
Cdd:TIGR02633 296 GAGRTELVQALFGAYPgKFEGNVFINGkpvdirnpaQAIRAGIAMvPEDRKRHGIVPILgvgkNITLSVLKS------FC 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SIKGLPPASIKSIAVKLLADVKLIEAAKIRA-GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDII-QE 711
Cdd:TIGR02633 370 FKMRIDAAAELQIIGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLInQL 449
|
170 180 190
....*....|....*....|....*....|...
gi 297797133 712 SKKGRAIILTTHSMEEADILGDRIGIMAKGRLR 744
Cdd:TIGR02633 450 AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
523-743 |
9.03e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 55.69 E-value: 9.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 523 HGLAKTYPGTtklgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVG 602
Cdd:PRK11288 8 DGIGKTFPGV--------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 603 MSNIRKMIGVCPQFDILWDALSSEEHLHLfasikGLPPASIKSIAVKLLADVKLIEAAKI--------RAGSYSGGMKRR 674
Cdd:PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYL-----GQLPHKGGIVNRRLLNYEAREQLEHLgvdidpdtPLKYLSIGQRQM 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 675 LSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRaEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
564-742 |
1.14e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 53.04 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTG---GDaIIYGNSirssvgmsNIRKMIGVCPQfDILWdalSSEEHLHlfasikglpp 640
Cdd:cd03233 38 VLGRPGSGCSTLLKALANRTEGNVsveGD-IHYNGI--------PYKEFAEKYPG-EIIY---VSEEDVH---------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 641 asIKSIAVKLLADVklieAAKIRAGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKG 715
Cdd:cd03233 95 --FPTLTVRETLDF----ALRCKGNEFvrgiSGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTmADVL 168
|
170 180
....*....|....*....|....*....
gi 297797133 716 RAIILTTHSMEEADILG--DRIGIMAKGR 742
Cdd:cd03233 169 KTTTFVSLYQASDEIYDlfDKVLVLYEGR 197
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
564-748 |
1.39e-07 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 54.72 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVGMSNI---RKMIGVCPQFDILWDALSSEEHLhLFA---SIKG 637
Cdd:COG4148 30 LFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFLpphRRRIGYVFQEARLFPHLSVRGNL-LYGrkrAPRA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASIKSIaVKLLAdvklIEA-AKIRAGSYSGGMKRRlsVAI--ALIGDPKLVFLDEPTTGMDPiTRRHvwDIIQESKK 714
Cdd:COG4148 109 ERRISFDEV-VELLG----IGHlLDRRPATLSGGERQR--VAIgrALLSSPRLLLMDEPLAALDL-ARKA--EILPYLER 178
|
170 180 190
....*....|....*....|....*....|....*....
gi 297797133 715 GRA-----IILTTHSMEEADILGDRIGIMAKGRLRCIGT 748
Cdd:COG4148 179 LRDeldipILYVSHSLDEVARLADHVVLLEQGRVVASGP 217
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
547-743 |
2.02e-07 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 52.95 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRKMIGVCPQFDILWDALS 624
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITrlKNREVPFLRRQIGMIFQDHHLLMDRT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 SEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRH 704
Cdd:PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 297797133 705 VWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK10908 176 ILRLFEEfNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
549-742 |
2.07e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 54.71 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTT---ISCLTGINPV--TGGDAIIYGNS-----------IR-SSVGMSNIRKMIG 611
Cdd:PRK15134 25 VNDVSLQIEAGETLALVGESGSGKSVTalsILRLLPSPPVvyPSGDIRFHGESllhaseqtlrgVRgNKIAMIFQEPMVS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 612 VCPQFDI---LWDALSseehLHlfasiKGLPPASIKSIAVKLLADVKLIEAAKiRAGSY----SGGMKRRLSVAIALIGD 684
Cdd:PRK15134 105 LNPLHTLekqLYEVLS----LH-----RGMRREAARGEILNCLDRVGIRQAAK-RLTDYphqlSGGERQRVMIAMALLTR 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQelNMGLLFITHNLSIVRKLADRVAVMQNGR 234
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
564-743 |
2.16e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 54.85 E-value: 2.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIiygNSIR-SSVGMSNIRKMIGvcpqfdilWdaLSSEEHLhLFASIK-----G 637
Cdd:PRK11174 381 LVGPSGAGKTSLLNALLGFLPYQGSLKI---NGIElRELDPESWRKHLS--------W--VGQNPQL-PHGTLRdnvllG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASIKSIAvklladvKLIEAAKI-----------------RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPI 700
Cdd:PRK11174 447 NPDASDEQLQ-------QALENAWVseflpllpqgldtpigdQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 297797133 701 TRRHVWDIIQESKKGRAIILTTHSMEEADILgDRIGIMAKGRL 743
Cdd:PRK11174 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQI 561
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
554-725 |
2.82e-07 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 52.81 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGgdaiiygnSIRSSVGMSnirkmIGVCPQfDILWDA---LSSEEHL 629
Cdd:PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGlVAPDEG--------VIKRNGKLR-----IGYVPQ-KLYLDTtlpLTVNRFL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 630 HLFASIKG---LPpasiksiAVKLLADVKLIEAAKIRagsYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:PRK09544 91 RLRPGTKKediLP-------ALKRVQAGHLIDAPMQK---LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY 160
|
170 180
....*....|....*....|.
gi 297797133 707 DIIQESKK--GRAIILTTHSM 725
Cdd:PRK09544 161 DLIDQLRRelDCAVLMVSHDL 181
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
566-723 |
2.99e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.16 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 566 GPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvgmsNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPASIKS 645
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 646 IAvklLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQES-KKGRAIILTTH 723
Cdd:PRK13543 120 SA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHlRGGGAALVTTH 195
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
661-729 |
3.72e-07 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 53.16 E-value: 3.72e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 297797133 661 KIRAGSYSGGMKRRLSVAIALIGDPK---LVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEAD 729
Cdd:pfam13304 231 ELPAFELSDGTKRLLALLAALLSALPkggLLLIDEPESGLHPKLLRRLLELLKElSRNGAQLILTTHSPLLLD 303
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
546-742 |
5.67e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.19 E-value: 5.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 546 FHAVKGL---WLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSI--RSSV-----GMSNIRKMIGVCPQ 615
Cdd:PRK10982 8 FPGVKALdnvNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfKSSKealenGISMVHQELNLVLQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 616 ---FDILWdalsseehlhlfasikgLPPASIKSIAV---KLLADVKLIEA-------AKIRAGSYSGGMKRRLSVAIALI 682
Cdd:PRK10982 88 rsvMDNMW-----------------LGRYPTKGMFVdqdKMYRDTKAIFDeldididPRAKVATLSVSQMQMIEIAKAFS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 297797133 683 GDPKLVFLDEPTTGMDPITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKeRGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
521-754 |
6.24e-07 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 52.00 E-value: 6.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 521 QIHGLAKTYPGTTKLGcckctkTSPFHAV-KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR- 598
Cdd:PRK10419 5 NVSGLSHHYAHGGLSG------KHQHQTVlNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAk 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 -SSVGMSNIRKMI---------GVCPQFDILWdaLSSEEHLHLFasikGLPPASIKSIAVKLLADVKL-IEAAKIRAGSY 667
Cdd:PRK10419 79 lNRAQRKAFRRDIqmvfqdsisAVNPRKTVRE--IIREPLRHLL----SLDKAERLARASEMLRAVDLdDSVLDKRPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL-- 743
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKlqQQFGTACLFITHDLRLVERFCQRVMVMDNGQIve 232
|
250
....*....|..
gi 297797133 744 -RCIGTSIRLKS 754
Cdd:PRK10419 233 tQPVGDKLTFSS 244
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
541-749 |
6.53e-07 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 52.40 E-value: 6.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRKMIGVcpqfdI 618
Cdd:PRK15079 29 QPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLgmKDDEWRAVRSDIQM-----I 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 619 LWDALSS-----------EEHLHLFASikGLPPASIKSIAVKLLADVKLIEAAKIR-AGSYSGGMKRRLSVAIALIGDPK 686
Cdd:PRK15079 104 FQDPLASlnprmtigeiiAEPLRTYHP--KLSRQEVKDRVKAMMLKVGLLPNLINRyPHEFSGGQCQRIGIARALILEPK 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 687 LVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIGTS 749
Cdd:PRK15079 182 LIICDEPVSALDVSIQAQVVNLLQQLQRemGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTY 246
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
542-742 |
7.36e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 52.76 E-value: 7.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 542 KTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPvTGGDAIIYGNSI--RSSVGMSNIRKMIGVCPQfdil 619
Cdd:COG4172 295 TVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLdgLSRRALRPLRRRMQVVFQ---- 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 wDALSS-----------EEHLHLFAsiKGLPPASIKSIAVKLLADVKLIEAAKIRagsY----SGGMKRRLSVAIALIGD 684
Cdd:COG4172 370 -DPFGSlsprmtvgqiiAEGLRVHG--PGLSAAERRARVAEALEEVGLDPAARHR---YphefSGGQRQRIAIARALILE 443
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:COG4172 444 PKLLVLDEPTSALDVSVQAQILDLLRDlqREHGLAYLFISHDLAVVRALAHRVMVMKDGK 503
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
550-723 |
7.71e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 53.19 E-value: 7.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 550 KGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS--SVGMSNIRK-MIGVCPQFDILWDALSSE 626
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldADALAQLRReHFGFIFQRYHLLSHLTAA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 EHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVW 706
Cdd:PRK10535 105 QNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
|
170
....*....|....*...
gi 297797133 707 DII-QESKKGRAIILTTH 723
Cdd:PRK10535 185 AILhQLRDRGHTVIIVTH 202
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
561-723 |
8.29e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 50.68 E-value: 8.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 561 LFCLLGPNGAGKTTTISCLTginpvtggdAIIYGNSIRSSVGMSNIRKMIGVcpqfdilwDALSSEEHLHlFASIKGLPP 640
Cdd:cd03240 24 LTLIVGQNGAGKTTIIEALK---------YALTGELPPNSKGGAHDPKLIRE--------GEVRAQVKLA-FENANGKKY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 641 ASIKSIAV-------------KLLADVKlieaakiraGSYSGGMKR------RLSVAIALIGDPKLVFLDEPTTGMDPIT 701
Cdd:cd03240 86 TITRSLAIlenvifchqgesnWPLLDMR---------GRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEEN 156
|
170 180
....*....|....*....|....*
gi 297797133 702 RRHVW-DII--QESKKGRAIILTTH 723
Cdd:cd03240 157 IEESLaEIIeeRKSQKNFQLIVITH 181
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
520-743 |
8.52e-07 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 51.34 E-value: 8.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTKLGcckctKTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR- 598
Cdd:TIGR02769 3 LEVRDVTHTYRTGGLFG-----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYq 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 599 -SSVGMSNIRKMI---------GVCPQFDILWDALSSEEHLhlfasiKGLPPASIKSIAVKLLADVKL-IEAAKIRAGSY 667
Cdd:TIGR02769 78 lDRKQRRAFRRDVqlvfqdspsAVNPRMTVRQIIGEPLRHL------TSLDESEQKARIAELLDMVGLrSEDADKLPRQL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQafGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
561-723 |
9.05e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 53.31 E-value: 9.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 561 LFCLLGPNGAGKTTTISCLTGINpvTGGdaIIYGNsIRSS---VGMSNIRKMIGVCPQFDILWDALSSEEHLhLFASIKG 637
Cdd:PLN03140 908 LTALMGVSGAGKTTLMDVLAGRK--TGG--YIEGD-IRISgfpKKQETFARISGYCEQNDIHSPQVTVRESL-IYSAFLR 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 LPPASIKSIAVKLLADV-KLIEAAKIRAG--------SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMD----PITRRH 704
Cdd:PLN03140 982 LPKEVSKEEKMMFVDEVmELVELDNLKDAivglpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDaraaAIVMRT 1061
|
170
....*....|....*....
gi 297797133 705 VWDIIQeskKGRAIILTTH 723
Cdd:PLN03140 1062 VRNTVD---TGRTVVCTIH 1077
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
545-742 |
1.13e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.55 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 545 PFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR------------SSVGMSNIR----- 607
Cdd:PRK10261 28 KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRrrsrqvielseqSAAQMRHVRgadma 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 608 -----KMIGVCPQFDIlWDALSSEEHLHlfasiKGLPPASIKSIAVKLLADVKLIEAAKIRA---GSYSGGMKRRLSVAI 679
Cdd:PRK10261 108 mifqePMTSLNPVFTV-GEQIAESIRLH-----QGASREEAMVEAKRMLDQVRIPEAQTILSrypHQLSGGMRQRVMIAM 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 297797133 680 ALIGDPKLVFLDEPTTGMDPITRRHVWDII----QESKKGraIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIkvlqKEMSMG--VIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
554-742 |
1.80e-06 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 50.14 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSS------VGMsnirkmigvcpqfdilwdaLSSE- 626
Cdd:COG3840 20 LTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALppaerpVSM-------------------LFQEn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 627 ---EHLHLFASIK-GLPP-----ASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRlsVAIA--LIGDPKLVFLDEPTT 695
Cdd:COG3840 81 nlfPHLTVAQNIGlGLRPglkltAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQR--VALArcLVRKRPILLLDEPFS 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 297797133 696 GMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGR 742
Cdd:COG3840 159 ALDPALRQEMLDLVDElcRERGLTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
668-743 |
2.15e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 50.90 E-value: 2.15e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTHSMEEADILGDRIGIMAKGRL 743
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLElqQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
561-729 |
2.42e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 48.51 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 561 LFCLLGPNGAGKTTTIscltginpvtggDAIIYGNSIRSSVGMSNIRKMIGVcpqfdilwdaLSSEEHLHLFASIKGLpp 640
Cdd:cd03227 23 LTIITGPNGSGKSTIL------------DAIGLALGGAQSATRRRSGVKAGC----------IVAAVSAELIFTRLQL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 641 asiksiavklladvklieaakiragsySGGMKRRLSVAIAL-----IGDPkLVFLDEPTTGMDPITRRHVWDIIQE-SKK 714
Cdd:cd03227 79 ---------------------------SGGEKELSALALILalaslKPRP-LYILDEIDRGLDPRDGQALAEAILEhLVK 130
|
170
....*....|....*...
gi 297797133 715 GRAIILTTH---SMEEAD 729
Cdd:cd03227 131 GAQVIVITHlpeLAELAD 148
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
518-729 |
3.46e-06 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 50.87 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 518 IAVQIHglAKTYPGTTKlgcckctktspfHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaIIYGNSI 597
Cdd:PRK10789 314 LDVNIR--QFTYPQTDH------------PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD-IRFHDIP 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 598 RSSVGMSNIRKMIGVCPQFDILW-DALSSEEHLhlfasikGLPPASIKSI-AVKLLADV-----KLIEAAKIRAGS---- 666
Cdd:PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFsDTVANNIAL-------GRPDATQQEIeHVARLASVhddilRLPQGYDTEVGErgvm 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 667 YSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAD 729
Cdd:PRK10789 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHrlsALTEAS 517
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
555-735 |
3.58e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 49.33 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 555 NIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSvgmsnirkmigvcPQFDILWDALSSEEHLHLFAS 634
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-------------PQYIKADYEGTVRDLLSSITK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 635 IKGLPPASIKSIAVKLLADvKLIEAakiRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ---E 711
Cdd:cd03237 88 DFYTHPYFKTEIAKPLQIE-QILDR---EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRrfaE 163
|
170 180
....*....|....*....|....
gi 297797133 712 SKKGRAIILtTHSMEEADILGDRI 735
Cdd:cd03237 164 NNEKTAFVV-EHDIIMIDYLADRL 186
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
551-776 |
3.68e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.10 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 551 GLWLNIAKDQLFCLLGPNGAGKTTTISCLTGinpvtggdaiiygnSIRSSVGMSNIRKMIGVCPQfdILWDALSSEEHLH 630
Cdd:TIGR00957 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLA--------------EMDKVEGHVHMKGSVAYVPQ--QAWIQNDSLRENI 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 631 LFAsiKGLPPASIKSI--AVKLLADVKLIEAA-KIRAG----SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:TIGR00957 720 LFG--KALNEKYYQQVleACALLPDLEILPSGdRTEIGekgvNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 704 HVWDIIQESK---KGRAIILTTHSMEEADILgDRIGIMAKGRLRCIGTSIRLKSRFGT--GFITTVSFPENKKDSARS 776
Cdd:TIGR00957 798 HIFEHVIGPEgvlKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQRDGAfaEFLRTYAPDEQQGHLEDS 874
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
564-724 |
5.54e-06 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 47.53 E-value: 5.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDaiiygnsirssvgmsnirkmIGVCPQFDILwdalsseehlhlFASIKG-LPPAS 642
Cdd:cd03223 32 ITGPSGTGKSSLFRALAGLWPWGSGR--------------------IGMPEGEDLL------------FLPQRPyLPLGT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 643 IKSIAVKLLADVklieaakiragsYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQEskKGRAIILTT 722
Cdd:cd03223 80 LREQLIYPWDDV------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE--LGITVISVG 145
|
..
gi 297797133 723 HS 724
Cdd:cd03223 146 HR 147
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
543-747 |
5.87e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 50.24 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 543 TSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIR--SSVGMSNIRKMIgvcpQFdILW 620
Cdd:PRK10261 334 TREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDtlSPGKLQALRRDI----QF-IFQ 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 621 DALSSEEHLHLFA-------SIKGLPP--ASIKSIAvKLLADVKLI-EAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFL 690
Cdd:PRK10261 409 DPYASLDPRQTVGdsimeplRVHGLLPgkAAAARVA-WLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 691 DEPTTGMDPITRRHVWDIIQESKK--GRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRdfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
554-760 |
9.11e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 49.97 E-value: 9.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIygnsirssvgmsnIRKMIGVCPQFDILWDALSSEEHLhlFA 633
Cdd:PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-------------IRGSVAYVPQVSWIFNATVRENIL--FG 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 SiKGLPPASIKSIAVKLLA-DVKLIEAAKI-----RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWD 707
Cdd:PLN03232 703 S-DFESERYWRAIDVTALQhDLDLLPGRDLteigeRGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 297797133 708 -IIQESKKGRAIILTTHSMEEADILgDRIGIMAKGRLRCIGTSIRLkSRFGTGF 760
Cdd:PLN03232 782 sCMKDELKGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAEL-SKSGSLF 833
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
528-731 |
2.99e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 47.71 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 528 TYPGTTKLgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRSSVgMSNIR 607
Cdd:PRK11176 350 TYPGKEVP------------ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT-LASLR 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 608 KMIGVCPQfdilwdalsseeHLHLF----------ASIKGLPPASIKSiAVKLLADVKLIEaaKIRAG----------SY 667
Cdd:PRK11176 417 NQVALVSQ------------NVHLFndtianniayARTEQYSREQIEE-AARMAYAMDFIN--KMDNGldtvigengvLL 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH---SMEEAD-IL 731
Cdd:PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHrlsTIEKADeIL 549
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
668-723 |
3.18e-05 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 47.88 E-value: 3.18e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKKGRAIILTTH 723
Cdd:COG4178 487 SLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
541-727 |
3.55e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 47.58 E-value: 3.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 541 TKTSPFH-AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNS--IRSSVGMSNirkmigvcpqfd 617
Cdd:PRK13545 31 SKDGEYHyALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAalIAISSGLNG------------ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ilwdALSSEEHLHLFASIKGLPPASIKSIAVKLL--ADV-KLIEAAkirAGSYSGGMKRRLSVAIALIGDPKLVFLDEPT 694
Cdd:PRK13545 99 ----QLTGIENIELKGLMMGLTKEKIKEIIPEIIefADIgKFIYQP---VKTYSSGMKSRLGFAISVHINPDILVIDEAL 171
|
170 180 190
....*....|....*....|....*....|....
gi 297797133 695 TGMDPITRRHVWDIIQESK-KGRAIILTTHSMEE 727
Cdd:PRK13545 172 SVGDQTFTKKCLDKMNEFKeQGKTIFFISHSLSQ 205
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
520-748 |
3.61e-05 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 46.23 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPGTTklgcckctktspfhAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIRS 599
Cdd:COG4604 2 IEIKNVSKRYGGKV--------------VLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVAT 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 600 SVGMsNIRKMIGVCPQfdilwdalssEEHLHL------------FASIKGLPPAsiksiavkllADVKLIEAAkIR---- 663
Cdd:COG4604 68 TPSR-ELAKRLAILRQ----------ENHINSrltvrelvafgrFPYSKGRLTA----------EDREIIDEA-IAyldl 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 664 ---AGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPitrRHVWDIIQESKK-----GRAIILTTHsmeeaDI- 730
Cdd:COG4604 126 edlADRYldelSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM---KHSVQMMKLLRRladelGKTVVIVLH-----DIn 197
|
250 260
....*....|....*....|..
gi 297797133 731 ----LGDRIGIMAKGRLRCIGT 748
Cdd:COG4604 198 fascYADHIVAMKDGRVVAQGT 219
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
564-738 |
3.67e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 46.59 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTG-INPVTGGdaiiYGNSirssvgmsnirkmigvcPQFDILWDALSSEEHLHLFASIKG----- 637
Cdd:cd03236 31 LVGPNGIGKSTALKILAGkLKPNLGK----FDDP-----------------PDWDEILDEFRGSELQNYFTKLLEgdvkv 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 --------LPPASIKSIAVKLLADV-------KLIEAAKIRA------GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTG 696
Cdd:cd03236 90 ivkpqyvdLIPKAVKGKVGELLKKKdergkldELVDQLELRHvldrniDQLSGGELQRVAIAAALARDADFYFFDEPSSY 169
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 297797133 697 MDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIM 738
Cdd:cd03236 170 LDIKQRLNAARLIRElAEDDNYVLVVEHDLAVLDYLSDYIHCL 212
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
520-698 |
6.17e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 46.11 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 520 VQIHGLAKTYPgtTKLGCCKCTKTspFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGN---- 595
Cdd:PRK11308 6 LQAIDLKKHYP--VKRGLFKPERL--VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQdllk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 596 -------SIRSSVGMS--------NIRKMIGvcpqfDILwdalssEEHLHLFASikgLPPASIKSIAVKLLADVKL-IEA 659
Cdd:PRK11308 82 adpeaqkLLRQKIQIVfqnpygslNPRKKVG-----QIL------EEPLLINTS---LSAAERREKALAMMAKVGLrPEH 147
|
170 180 190
....*....|....*....|....*....|....*....
gi 297797133 660 AKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMD 698
Cdd:PRK11308 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
558-729 |
8.00e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.90 E-value: 8.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 558 KDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIygnsirssVGMSNIRKMigvcpqfdilwdalsseehlhlfasikg 637
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------IDGEDILEE---------------------------- 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 638 lppasiksiavklLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQ------- 710
Cdd:smart00382 45 -------------VLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEElrlllll 111
|
170
....*....|....*....
gi 297797133 711 ESKKGRAIILTTHSMEEAD 729
Cdd:smart00382 112 KSEKNLTVILTTNDEKDLG 130
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
664-743 |
8.34e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 46.32 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 664 AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEadILG--DRIGIMAK 740
Cdd:NF040905 402 VGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINElAAEGKGVIVISSELPE--LLGmcDRIYVMNE 479
|
...
gi 297797133 741 GRL 743
Cdd:NF040905 480 GRI 482
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
564-800 |
1.28e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 46.27 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQ----------FDI----------LWDAL 623
Cdd:PLN03130 1270 IVGRTGAGKSSMLNALFRIVELERGRILIDGCDI-SKFGLMDLRKVLGIIPQapvlfsgtvrFNLdpfnehndadLWESL 1348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 624 sseEHLHLFASIKGLPpasiksiavkLLADVKLIEAAKiragSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:PLN03130 1349 ---ERAHLKDVIRRNS----------LGLDAEVSEAGE----NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 704 HVWDIIQESKKGRAIILTTHSMEEAdILGDRIGIMAKGRLRCIGTSIRLKSRFGTGFITTVsfpenkkdsaRSTSP---E 780
Cdd:PLN03130 1412 LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV----------QSTGAanaQ 1480
|
250 260
....*....|....*....|.
gi 297797133 781 PLKRF-FKEHLKVEPTEESKA 800
Cdd:PLN03130 1481 YLRSLvFGGDEDRLAREESKA 1501
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
566-727 |
1.30e-04 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 44.32 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 566 GPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQ----F-DILWDALsseehlhLFasikglpP 640
Cdd:PRK10247 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDI-STLKPEIYRQQVSYCAQtptlFgDTVYDNL-------IF-------P 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 641 ASIKSIAV---KLLADVKLIEAA----KIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-- 711
Cdd:PRK10247 105 WQIRNQQPdpaIFLDDLERFALPdtilTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRyv 184
|
170
....*....|....*.
gi 297797133 712 SKKGRAIILTTHSMEE 727
Cdd:PRK10247 185 REQNIAVLWVTHDKDE 200
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
535-738 |
1.37e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 45.57 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 535 LGCCKCTKTSPFHAVK--GLWLNIAKD----------QLFCL-----------LGPNGAGKTTTISCLTG-INPVTGG-- 588
Cdd:PRK13409 52 IGCGICVKKCPFDAISivNLPEELEEEpvhrygvngfKLYGLpipkegkvtgiLGPNGIGKTTAVKILSGeLIPNLGDye 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 589 -----DAII---------------YGNSIRSSVgmsnirKmigvcPQF-DILwdalsseehlhlfasikglpPASIKSIA 647
Cdd:PRK13409 132 eepswDEVLkrfrgtelqnyfkklYNGEIKVVH------K-----PQYvDLI--------------------PKVFKGKV 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 648 VKLLADV-------KLIEAAKIRA------GSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK 714
Cdd:PRK13409 181 RELLKKVdergkldEVVERLGLENildrdiSELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260
|
250 260
....*....|....*....|....
gi 297797133 715 GRAIILTTHSMEEADILGDRIGIM 738
Cdd:PRK13409 261 GKYVLVVEHDLAVLDYLADNVHIA 284
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
547-698 |
1.50e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 45.47 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 547 HAVKGLWLNIAKDQLFCLLGPNGAGKTTT-ISCLTGINpvTGGDAIIYGNSIRSSvgmsNIRKMIGVCPQFDILW-DALS 624
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTgLALLRLIN--SQGEIWFDGQPLHNL----NRRQLLPVRHRIQVVFqDPNS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 625 S-----------EEHLHLFAsiKGLPPASIKSIAVKLLADVKLIEAAKIR-AGSYSGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:PRK15134 374 SlnprlnvlqiiEEGLRVHQ--PTLSAAQREQQVIAVMEEVGLDPETRHRyPAEFSGGQRQRIAIARALILKPSLIILDE 451
|
....*.
gi 297797133 693 PTTGMD 698
Cdd:PRK15134 452 PTSSLD 457
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
668-743 |
1.55e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 45.29 E-value: 1.55e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 668 SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTthSMEEADILG--DRIGIMAKGRL 743
Cdd:PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYElAAQGVAVLFV--SSDLPEVLGvaDRIVVMREGRI 474
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
542-747 |
1.74e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 44.42 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 542 KTSPFHAVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYG--NSIRSSVGMSNirkmigvcpqfdil 619
Cdd:PRK13546 33 KNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGevSVIAISAGLSG-------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 620 wdALSSEEHLHLFASIKGLPPASIKSIAVKLLADVKLIEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDP 699
Cdd:PRK13546 99 --QLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 297797133 700 ITRRHVWDIIQESK-KGRAIILTTHSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK13546 177 TFAQKCLDKIYEFKeQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
644-738 |
2.09e-04 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 44.51 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 644 KSIAVKLLADVKLIEAAKIRAgSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRA 717
Cdd:COG4170 133 KKRAIELLHRVGIKDHKDIMN-SYphelTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlqGTS 211
|
90 100
....*....|....*....|.
gi 297797133 718 IILTTHSMEEADILGDRIGIM 738
Cdd:COG4170 212 ILLISHDLESISQWADTITVL 232
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
554-726 |
2.87e-04 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 43.47 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 554 LNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGgdAIIYGNSIRSSVGMSNI----RKMIGVCPQFDILWDAlSSEEH 628
Cdd:cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGeMQTLEG--KVHWSNKNESEPSFEATrsrnRYSVAYAAQKPWLLNA-TVEEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 629 LhLFASIKGLPPASIKSIAVKLLADVKLI---EAAKI--RAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRR 703
Cdd:cd03290 99 I-TFGSPFNKQRYKAVTDACSLQPDIDLLpfgDQTEIgeRGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
|
170 180
....*....|....*....|....*...
gi 297797133 704 H-----VWDIIQESKkgRAIILTTHSME 726
Cdd:cd03290 178 HlmqegILKFLQDDK--RTLVLVTHKLQ 203
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
644-742 |
4.31e-04 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 43.64 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 644 KSIAVKLLADVKlIEAAKIRAGSY----SGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESKK--GRA 717
Cdd:PRK15093 133 KRRAIELLHRVG-IKDHKDAMRSFpyelTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnnNTT 211
|
90 100
....*....|....*....|....*
gi 297797133 718 IILTTHSMEEADILGDRIGIMAKGR 742
Cdd:PRK15093 212 ILLISHDLQMLSQWADKINVLYCGQ 236
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
666-729 |
6.08e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.86 E-value: 6.08e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 666 SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGRAIILTTH---SMEEAD 729
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDikDKADKTIITIAHriaSIKRSD 1426
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
648-747 |
6.54e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 42.94 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 648 VKLLAdvklIEAAKIR-AGSYSGGMKRRlsVAI--ALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIIL-TT 722
Cdd:PRK11144 113 VALLG----IEPLLDRyPGSLSGGEKQR--VAIgrALLTAPELLLMDEPLASLDLPRKRELLPYLERlAREINIPILyVS 186
|
90 100
....*....|....*....|....*
gi 297797133 723 HSMEEADILGDRIGIMAKGRLRCIG 747
Cdd:PRK11144 187 HSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
558-755 |
6.70e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 43.07 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 558 KDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAI------------------------IYGNSIRSSVGMSNIRKMIGVC 613
Cdd:COG3593 22 SDDLTVLVGENNSGKSSILEALRLLLGPSSSRKFdeedfylgddpdlpeieieltfgsLLSRLLRLLLKEEDKEELEEAL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 614 PQFDILWDALSSE--EHL-HLFASIKGLPPASIKSIAVKLL-----ADVKLIEAAKIRAGSYSGGMKRRLSVAIALI--- 682
Cdd:COG3593 102 EELNEELKEALKAlnELLsEYLKELLDGLDLELELSLDELEdllksLSLRIEDGKELPLDRLGSGFQRLILLALLSAlae 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 297797133 683 ----GDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILG-DRIGIMAKGRLRCIGTSIRLKSR 755
Cdd:COG3593 182 lkraPANPILLIEEPEAHLHPQAQRRLLKLLKElSEKPNQVIITTHSPHLLSEVPlENIRRLRRDSGGTTSTKLIDLDD 260
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
548-744 |
7.09e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 43.42 E-value: 7.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 548 AVKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKmigvcpqfdiLWDALSSEE 627
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV-TAEQPEDYRK----------LFSAVFTDF 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 628 HL--HLFASiKGLPPAsiKSIAVKLLADVKL-----IEAAKIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPI 700
Cdd:PRK10522 407 HLfdQLLGP-EGKPAN--PALVEKWLERLKMahkleLEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 297797133 701 TRRHVWDII----QEskKGRAIILTTHSmeeaD---ILGDRIGIMAKGRLR 744
Cdd:PRK10522 484 FRREFYQVLlpllQE--MGKTIFAISHD----DhyfIHADRLLEMRNGQLS 528
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
664-725 |
7.78e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.48 E-value: 7.78e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 664 AGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQESK--KGRAIILTTHSM 725
Cdd:PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgnENRITIIIAHRL 640
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
549-785 |
1.04e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 42.15 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 549 VKGLWLNIAKDQLFCLLGPNGAGKTTTISCLTG-INPVTGgdaiiygnSIRSSvgmsnirKMIGVCPQF----------D 617
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGeLEPSEG--------KIKHS-------GRISFSSQFswimpgtikeN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 618 ILWdALSSEEHLHLfasikglppASIKsiAVKLLADV-KLIEAAKIRAG----SYSGGMKRRLSVAIALIGDPKLVFLDE 692
Cdd:cd03291 118 IIF-GVSYDEYRYK---------SVVK--ACQLEEDItKFPEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDS 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 693 PTTGMDPITRRHVWD-IIQESKKGRAIILTTHSMEEADIlGDRIGIMAKGRLRCIGTSIRLKSR---FGTGFITTVSFPE 768
Cdd:cd03291 186 PFGYLDVFTEKEIFEsCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQSLrpdFSSKLMGYDTFDQ 264
|
250
....*....|....*..
gi 297797133 769 NKKDSARSTSPEPLKRF 785
Cdd:cd03291 265 FSAERRNSILTETLRRF 281
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
564-698 |
1.46e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 42.63 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGINPVTGGDAIIYGNSIrSSVGMSNIRKMIGVCPQFDILW--------DALS--SEE------ 627
Cdd:TIGR00957 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-AKIGLHDLRFKITIIPQDPVLFsgslrmnlDPFSqySDEevwwal 1395
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 297797133 628 ---HLHLFASikglppasikSIAVKLlaDVKLIEAAKiragSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMD 698
Cdd:TIGR00957 1396 elaHLKTFVS----------ALPDKL--DHECAEGGE----NLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
556-735 |
1.58e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.63 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 556 IAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDaiiygnsirssvgmsnirkmigvcpqfdILWDALSseehlhlfasi 635
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN----------------------------DEWDGIT----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 636 kglppASIKSIAVKLladvklieaakiragsySGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SK 713
Cdd:cd03222 63 -----PVYKPQYIDL-----------------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRlsEE 120
|
170 180
....*....|....*....|..
gi 297797133 714 KGRAIILTTHSMEEADILGDRI 735
Cdd:cd03222 121 GKKTALVVEHDLAVLDYLSDRI 142
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
564-738 |
1.93e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 42.08 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 564 LLGPNGAGKTTTISCLTGInpvtggdaIIygnsirssvgmsnirkmigvcPQFDILWDALSSEEHLHLFA---------- 633
Cdd:COG1245 104 ILGPNGIGKSTALKILSGE--------LK---------------------PNLGDYDEEPSWDEVLKRFRgtelqdyfkk 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297797133 634 ----SIKglppASIKSIAVKLLADV-------------------KLIEAAKIRA------GSYSGGMKRRLSVAIALIGD 684
Cdd:COG1245 155 langEIK----VAHKPQYVDLIPKVfkgtvrellekvdergkldELAEKLGLENildrdiSELSGGELQRVAIAAALLRD 230
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 297797133 685 PKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEEADILGDRIGIM 738
Cdd:COG1245 231 ADFYFFDEPSSYLDIYQRLNVARLIRElAEEGKYVLVVEHDLAILDYLADYVHIL 285
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
666-726 |
5.52e-03 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 40.03 E-value: 5.52e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 666 SYSGGMKRRLSVAIALIG---DPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRA-IILTTHSME 726
Cdd:COG1106 202 EESDGTKRLLALAGALLDalaKGGVLLIDEIEASLHPSLLRKLLKLFLDlANKNNAqLIFTTHSTE 267
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
664-733 |
7.09e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.46 E-value: 7.09e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 297797133 664 AGSYSGGMKRRLSVAIALIGDPK--LVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHS---MEEADILGD 733
Cdd:cd03238 85 LSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGlIDLGNTVILIEHNldvLSSADWIID 160
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
666-698 |
9.71e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 39.55 E-value: 9.71e-03
10 20 30
....*....|....*....|....*....|...
gi 297797133 666 SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMD 698
Cdd:PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
|
| |
