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Conserved domains on  [gi|2445349433|ref|XP_003105090|]
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hypothetical protein GCK72_001407 [Caenorhabditis remanei]

Protein Classification

RPEL domain-containing protein( domain architecture ID 13923524)

RPEL domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
460-483 3.87e-06

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


:

Pssm-ID: 128947  Cd Length: 26  Bit Score: 43.62  E-value: 3.87e-06
                           10        20
                   ....*....|....*....|....
gi 2445349433  460 KLARKLSERPTPEELEDRNILRRR 483
Cdd:smart00707   2 VLNRKLSQRPTREELEERNILKEL 25
RPEL super family cl29414
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 496-521 8.90e-03

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


The actual alignment was detected with superfamily member smart00707:

Pssm-ID: 475195  Cd Length: 26  Bit Score: 33.99  E-value: 8.90e-03
                           10        20
                   ....*....|....*....|....*.
gi 2445349433  496 KLLLRKLSFRPTIVQLKEQQIIQFND 521
Cdd:smart00707   1 DVLNRKLSQRPTREELEERNILKELS 26
 
Name Accession Description Interval E-value
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
460-483 3.87e-06

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 43.62  E-value: 3.87e-06
                           10        20
                   ....*....|....*....|....
gi 2445349433  460 KLARKLSERPTPEELEDRNILRRR 483
Cdd:smart00707   2 VLNRKLSQRPTREELEERNILKEL 25
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 460-481 1.65e-05

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 41.49  E-value: 1.65e-05
                          10        20
                  ....*....|....*....|..
gi 2445349433 460 KLARKLSERPTPEELEDRNILR 481
Cdd:pfam02755   1 SLERKLSHRPTREELVERNILP 22
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
496-521 8.90e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 33.99  E-value: 8.90e-03
                           10        20
                   ....*....|....*....|....*.
gi 2445349433  496 KLLLRKLSFRPTIVQLKEQQIIQFND 521
Cdd:smart00707   1 DVLNRKLSQRPTREELEERNILKELS 26
 
Name Accession Description Interval E-value
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
460-483 3.87e-06

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 43.62  E-value: 3.87e-06
                           10        20
                   ....*....|....*....|....
gi 2445349433  460 KLARKLSERPTPEELEDRNILRRR 483
Cdd:smart00707   2 VLNRKLSQRPTREELEERNILKEL 25
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 460-481 1.65e-05

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 41.49  E-value: 1.65e-05
                          10        20
                  ....*....|....*....|..
gi 2445349433 460 KLARKLSERPTPEELEDRNILR 481
Cdd:pfam02755   1 SLERKLSHRPTREELVERNILP 22
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
496-521 8.90e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 33.99  E-value: 8.90e-03
                           10        20
                   ....*....|....*....|....*.
gi 2445349433  496 KLLLRKLSFRPTIVQLKEQQIIQFND 521
Cdd:smart00707   1 DVLNRKLSQRPTREELEERNILKELS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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