NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|512908751|ref|XP_004926758|]
View 

attacin-like [Bombyx mori]

Protein Classification

Attacin_N and Attacin_C domain-containing protein( domain architecture ID 10265529)

Attacin_N and Attacin_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Attacin_C pfam03769
Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All ...
 94-214 1.76e-43

Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


:

Pssm-ID: 397714  Cd Length: 120  Bit Score: 141.75  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512908751   94 PGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSaipNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGK 173
Cdd:pfam03769   1 PGFGSQTTAAAQANLFNNNNHNLNANAFASHNQPA---NGPNFDTFGGGLDYQTANGHGASLGVSHTPKLGMTDLNAGGR 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 512908751  174 LNLFQSPS--SSLDFNAGFKKFDTPFYRSSWEPNVGFSFSKFF 214
Cdd:pfam03769  78 ANLWTSPSgnTSLDATGNASRHTSGPFRGKSDFGGGLGLSHNF 120
Attacin_N super family cl04252
Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin ...
 27-92 2.16e-14

Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin (which share similarity to the C-terminal region of attacin). All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


The actual alignment was detected with superfamily member pfam03768:

Pssm-ID: 397713  Cd Length: 64  Bit Score: 65.16  E-value: 2.16e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512908751   27 QAGSFTVNSDGTSGAALKVPLTGNDKNVLS---AIGSAdfndrHKLSAASAGLALDNINGHGLSLTGTR 92
Cdd:pfam03768   1 LGGSATSNPTGGADARLGLTLGTPDHNVRGqvfAAGNT-----QAGPVTSGGTLAYNNNGHGLSLTKTH 64
 
Name Accession Description Interval E-value
Attacin_C pfam03769
Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All ...
 94-214 1.76e-43

Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


Pssm-ID: 397714  Cd Length: 120  Bit Score: 141.75  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512908751   94 PGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSaipNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGK 173
Cdd:pfam03769   1 PGFGSQTTAAAQANLFNNNNHNLNANAFASHNQPA---NGPNFDTFGGGLDYQTANGHGASLGVSHTPKLGMTDLNAGGR 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 512908751  174 LNLFQSPS--SSLDFNAGFKKFDTPFYRSSWEPNVGFSFSKFF 214
Cdd:pfam03769  78 ANLWTSPSgnTSLDATGNASRHTSGPFRGKSDFGGGLGLSHNF 120
Attacin_N pfam03768
Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin ...
 27-92 2.16e-14

Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin (which share similarity to the C-terminal region of attacin). All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


Pssm-ID: 397713  Cd Length: 64  Bit Score: 65.16  E-value: 2.16e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512908751   27 QAGSFTVNSDGTSGAALKVPLTGNDKNVLS---AIGSAdfndrHKLSAASAGLALDNINGHGLSLTGTR 92
Cdd:pfam03768   1 LGGSATSNPTGGADARLGLTLGTPDHNVRGqvfAAGNT-----QAGPVTSGGTLAYNNNGHGLSLTKTH 64
 
Name Accession Description Interval E-value
Attacin_C pfam03769
Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All ...
 94-214 1.76e-43

Attacin, C-terminal region; This family includes attacin, sarcotoxin and diptericin. All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


Pssm-ID: 397714  Cd Length: 120  Bit Score: 141.75  E-value: 1.76e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512908751   94 PGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSaipNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGK 173
Cdd:pfam03769   1 PGFGSQTTAAAQANLFNNNNHNLNANAFASHNQPA---NGPNFDTFGGGLDYQTANGHGASLGVSHTPKLGMTDLNAGGR 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 512908751  174 LNLFQSPS--SSLDFNAGFKKFDTPFYRSSWEPNVGFSFSKFF 214
Cdd:pfam03769  78 ANLWTSPSgnTSLDATGNASRHTSGPFRGKSDFGGGLGLSHNF 120
Attacin_N pfam03768
Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin ...
 27-92 2.16e-14

Attacin, N-terminal region; This family includes attacin and sarcotoxin, but not diptericin (which share similarity to the C-terminal region of attacin). All members of this family are insect antibacterial proteins which are induced by the fat body and subsequently released into secreted into the hemolymph where they act synergistically to kill the invading microorganizm.


Pssm-ID: 397713  Cd Length: 64  Bit Score: 65.16  E-value: 2.16e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 512908751   27 QAGSFTVNSDGTSGAALKVPLTGNDKNVLS---AIGSAdfndrHKLSAASAGLALDNINGHGLSLTGTR 92
Cdd:pfam03768   1 LGGSATSNPTGGADARLGLTLGTPDHNVRGqvfAAGNT-----QAGPVTSGGTLAYNNNGHGLSLTKTH 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH