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Conserved domains on  [gi|551516812|ref|XP_005809908|]
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NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 isoform X1 [Xiphophorus maculatus]

Protein Classification

NDUF_B4 domain-containing protein( domain architecture ID 10537755)

NDUF_B4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 3-126 1.39e-70

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


:

Pssm-ID: 429355  Cd Length: 124  Bit Score: 207.25  E-value: 1.39e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551516812    3 DYREAPLATRPKTLDPNEYfNLSPDYRRAEEDRAALRANLKRQYQLQLNNPHRTELIEDPALTRWVYAR-ASPYPHFRPT 81
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEY-NLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARsANIYPNFRPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 551516812   82 KKTSLLGVMFGVVPLFALYYIFKTDRDNKEEKIKAGTLDRKFNLS 126
Cdd:pfam07225  80 PKTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 3-126 1.39e-70

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 207.25  E-value: 1.39e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551516812    3 DYREAPLATRPKTLDPNEYfNLSPDYRRAEEDRAALRANLKRQYQLQLNNPHRTELIEDPALTRWVYAR-ASPYPHFRPT 81
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEY-NLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARsANIYPNFRPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 551516812   82 KKTSLLGVMFGVVPLFALYYIFKTDRDNKEEKIKAGTLDRKFNLS 126
Cdd:pfam07225  80 PKTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 3-126 1.39e-70

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 207.25  E-value: 1.39e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 551516812    3 DYREAPLATRPKTLDPNEYfNLSPDYRRAEEDRAALRANLKRQYQLQLNNPHRTELIEDPALTRWVYAR-ASPYPHFRPT 81
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEY-NLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARsANIYPNFRPT 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 551516812   82 KKTSLLGVMFGVVPLFALYYIFKTDRDNKEEKIKAGTLDRKFNLS 126
Cdd:pfam07225  80 PKTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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