|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
108-358 |
1.16e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 108 KISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEK 187
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 188 QAHRCEELLHAQHQrlLEVLDTEKELLKEKIQEALTQQSQEQKEtlgkclQEEMQKNKETLESAVKLEKEAMKDVITKAV 267
Cdd:COG1196 311 RRELEERLEELEEE--LAELEEELEELEEELEELEEELEEAEEE------LEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 268 EEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVRE 347
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250
....*....|.
gi 564349812 348 QRRLDQVTRQR 358
Cdd:COG1196 463 ELLAELLEEAA 473
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-353 |
3.34e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQyvS 183
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER-LEELEEELAELEEELEELEEELEELEEELEEAEEEL--E 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 184 AIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGkcLQEEMQKNKETLESAVKLEKEAMKDVI 263
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEE-LLEALRAAAELAAQLEE--LEEAEEALLERLERLEEELEELEEALA 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 264 TKAVEEERENLEkvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVE 343
Cdd:COG1196 432 ELEEEEEEEEEA---LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
250
....*....|
gi 564349812 344 YVREQRRLDQ 353
Cdd:COG1196 509 GVKAALLLAG 518
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
106-386 |
6.92e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 6.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 106 RQKISSLETKLKASEEEKQRIKKDVESL-MEKHSVLEKDFLKEKEQDAVSFQ--------ARYRELQALL------QSSV 170
Cdd:pfam17380 315 RRKLEEAEKARQAEMDRQAAIYAEQERMaMERERELERIRQEERKRELERIRqeeiameiSRMRELERLQmerqqkNERV 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 171 KQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEVLDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEM 241
Cdd:pfam17380 395 RQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRRLEEERAREMERVRLE-EQERQQQVERLRQ--QEEE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 242 QKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAE 321
Cdd:pfam17380 472 RKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEE-----ERKRKLLEKEMEERQKAIYEEERRREAE 539
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564349812 322 EQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSAliATEPVDIE 386
Cdd:pfam17380 540 EERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
115-381 |
4.26e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 115 KLKASEEEKQR--IKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSsVKQQLDAIEKQYVSAIEKqahrc 192
Cdd:COG1196 217 ELKEELKELEAelLLLKLRELEAELEELEAE-LEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAE----- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 193 EELLHAQHQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERE 272
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 273 NLEKVHAEEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLD 352
Cdd:COG1196 369 EAEAELAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260
....*....|....*....|....*....
gi 564349812 353 QVTRQRSLSSLELFLSCAQKQLSALIATE 381
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLE 476
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
113-340 |
2.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 113 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIEKQAHR 191
Cdd:PTZ00121 1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 192 CEELLHAQHQRLLEVLDTEKELLKEKIQEA-LTQQSQEQKETLGKCLQEEMQKNKEtlESAVKLEKEAMKDVITKAVEEE 270
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAeEAKKAEEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKAEELKKAEEE 1631
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564349812 271 RENLEKV-HAEEREMWKTEHARDQERvaEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDE 340
Cdd:PTZ00121 1632 KKKVEQLkKKEAEEKKKAEELKKAEE--ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
106-358 |
2.80e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK-DFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSA 184
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 185 IEKQAH----------RCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKL 254
Cdd:PTZ00121 1436 AKKKAEeakkadeakkKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 255 EK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQRRSEKAM 330
Cdd:PTZ00121 1516 KKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAKKAEEAR 1593
|
250 260
....*....|....*....|....*...
gi 564349812 331 EEAVKRTRDELVEYVREQRRLDQVTRQR 358
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
117-336 |
3.39e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 117 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELL 196
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 197 HAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLEsavKLEKEAMKdvitKAVEEERENLEK 276
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED---KKKAEEAK----KAEEDEKKAAEA 1693
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564349812 277 VHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 336
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
103-338 |
1.28e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQsSVKQQLDAIEKQYV 182
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIA-ELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 183 SAIEKQAhrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLgkclqEEMQKNKETLESAVKL--EKEAMK 260
Cdd:COG4942 108 ELLRALY------RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-----EELRADLAELAALRAEleAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564349812 261 DVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMsQEAVKAAIAEEQRRSEKAMEEAVKRTR 338
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL-EALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
107-335 |
4.22e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 107 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQALLQSS---VKQQLDAIEKQY 181
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 182 ------VSAIEKQAHRCEELLHAQHQRLLEvLDTEKELLKEKIQEALTQQSQEQK-----ETLGKCLQEEMQKNKETLES 250
Cdd:TIGR02168 347 eelkeeLESLEAELEELEAELEELESRLEE-LEEQLETLRSKVAQLELQIASLNNeierlEARLERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 251 AVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAM 330
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
....*
gi 564349812 331 EEAVK 335
Cdd:TIGR02168 505 SEGVK 509
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
105-301 |
4.69e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 105 LRQKISslETKLKASEEEKQRIKKDVESLMEKHSvlekdflKEKEQDAvsfQARYRELQALLQSSVKQQLDAIEKQyvsa 184
Cdd:PRK12704 24 VRKKIA--EAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRNELQKL---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 185 iEKQAHRCEELLhaqhQRLLEVLDTEKELL--KEKIQEALTQQSQEQKETLGKCLQEEMQKnketLESAVKLEKEAMKDV 262
Cdd:PRK12704 88 -EKRLLQKEENL----DRKLELLEKREEELekKEKELEQKQQELEKKEEELEELIEEQLQE----LERISGLTAEEAKEI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564349812 263 ITKAVEEE--RENLEKVHAEEREMWKTEHARDQERVAEAIQ 301
Cdd:PRK12704 159 LLEKVEEEarHEAAVLIKEIEEEAKEEADKKAKEILAQAIQ 199
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-353 |
6.14e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdAVSFQARYRELQALLQSSVKQQLDAIEKQYVS 183
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-ADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 184 AIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQKNKETLESAVKLEKEAMKDV 262
Cdd:PTZ00121 1412 KAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAEEAKKADEAKKKAEEAKKADE 1487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 263 ITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEEQRRSEKaMEEAVKRTRDELV 342
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEEKKKADE-LKKAEELKKAEEK 1563
|
250
....*....|.
gi 564349812 343 EYVREQRRLDQ 353
Cdd:PTZ00121 1564 KKAEEAKKAEE 1574
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-351 |
7.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQ--ARYRELQALLQSSVKQQLDAIE--K 179
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEelAEAEAEIEELEAQIEQLKEELKalR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 180 QYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQKETLGKC--LQEEMQKNKETLESAVKLEKE 257
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELSEDIESLaaEIEELEELIEELESELEALLN 880
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 258 AmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQEQQRMSQEA--VKAAIAEEQRRSEKAMEEA 333
Cdd:TIGR02168 881 E-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELRLEGLEVRIdnLQERLSEEYSLTLEEAEAL 959
|
250
....*....|....*...
gi 564349812 334 VKRTRDELVEYVREQRRL 351
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRL 977
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
187-381 |
1.00e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 187 KQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdv 262
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA---- 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 263 itKAVEEERENLEKVHAEEREMW---------KTEHARDQERVAEAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKA 329
Cdd:PTZ00121 1243 --KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELKKAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEA 1320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564349812 330 MEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQLSALIATE 381
Cdd:PTZ00121 1321 KKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-286 |
1.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 104 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKhsvlekdfLKEKEQDAVSFQARYRELQALLQS------SVKQQLDAI 177
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETlrskvaQLELQIASL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 178 EKQyVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKclQEEMQKNKETLESAVKLEKE 257
Cdd:TIGR02168 399 NNE-IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE--LERLEEALEELREELEEAEQ 475
|
170 180 190
....*....|....*....|....*....|....*...
gi 564349812 258 AMKDVITK---------AVEEERENLEKVHAEEREMWK 286
Cdd:TIGR02168 476 ALDAAERElaqlqarldSLERLQENLEGFSEGVKALLK 513
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
59-358 |
1.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 59 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 138
Cdd:PRK04863 809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 139 VLEKDFLKEKEQDAVSFQARYRELQAllqssvkqQLDAIE--KQYVsaiekqahrceellhAQHQRLLEVLDTEKELLke 216
Cdd:PRK04863 876 ALNRLLPRLNLLADETLADRVEEIRE--------QLDEAEeaKRFV---------------QQHGNALAQLEPIVSVL-- 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 217 kiqealtQQSQEQKETlgkcLQEEMQKNKETLEsAVKLEKEAMKDVITKA-----------VEEERENLEK-----VHAE 280
Cdd:PRK04863 931 -------QSDPEQFEQ----LKQDYQQAQQTQR-DAKQQAFALTEVVQRRahfsyedaaemLAKNSDLNEKlrqrlEQAE 998
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 281 -EREMWKTEHARDQERVAEAIQ--AAVQEQQRMSQEAVKAAIAEEQR---RSEKAMEEAVKRTRDELVEYVREQR-RLDQ 353
Cdd:PRK04863 999 qERTRAREQLRQAQAQLAQYNQvlASLKSSYDAKRQMLQELKQELQDlgvPADSGAEERARARRDELHARLSANRsRRNQ 1078
|
....*
gi 564349812 354 VTRQR 358
Cdd:PRK04863 1079 LEKQL 1083
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
117-339 |
1.55e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 117 KASEEEKQRIKKDVESL--MEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEK--QYVSAIEKQAHRC 192
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKveQLKKKEAEEKKKA 1649
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 193 EELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEER- 271
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENk 1729
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564349812 272 ---ENLEKvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVK---AAIAEE-QRRSEKAMEEAVKRTRD 339
Cdd:PTZ00121 1730 ikaEEAKK--EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKekeAVIEEElDEEDEKRRMEVDKKIKD 1802
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
166-333 |
1.56e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.17 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 166 LQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCLQEEMQKNK 245
Cdd:PRK09510 67 QQQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQKQAEEAAAK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 246 ETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMSQEAVKAAI 319
Cdd:PRK09510 141 AAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAAAEAKKKAA 220
|
170
....*....|....
gi 564349812 320 AEEQRRSEKAMEEA 333
Cdd:PRK09510 221 AEAKAAAAKAAAEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
106-306 |
2.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEK--------DFLKEKEQDAVSFQARYRELQallqssvkQQLDAI 177
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlAEYSWDEIDVASAEREIAELE--------AELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 178 EK--QYVSAIEKQAHRCEELLhAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKetlgkclQEEMQKNKETLESAVKLE 255
Cdd:COG4913 681 DAssDDLAALEEQLEELEAEL-EELEEELDELKGEIGRLEKELEQAEEELDELQD-------RLEAAEDLARLELRALLE 752
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 564349812 256 KEAMKDVITKAVEEERENLEkvhaEEREMWKTEHARDQERVAEAIQAAVQE 306
Cdd:COG4913 753 ERFAAALGDAVERELRENLE----ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
98-321 |
4.52e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.28 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 98 VHVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALLQSSVkQQLDAI 177
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-IEEERKRRDKLTEEYAELKEELEDLR-AELEEV 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 178 E----------KQYVSAIEKQAHRCEELLHAQH--QRLLEVLDTEKELLKEKIQEALTQQSQEQKETlgKCLQEEMQKNK 245
Cdd:TIGR02169 377 DkefaetrdelKDYREKLEKLKREINELKRELDrlQEELQRLSEELADLNAAIAGIEAKINELEEEK--EDKALEIKKQE 454
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564349812 246 ETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAE 321
Cdd:TIGR02169 455 WKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ 529
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
107-357 |
5.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.97 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 107 QKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYVSAIE 186
Cdd:PTZ00121 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 187 KQahRCEELLHAQHQRLLEVLDTEKEL-----LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEA 258
Cdd:PTZ00121 1277 AR--KADELKKAEEKKKADEAKKAEEKkkadeAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEA 1354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 259 MKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI-----------AEEQRRSE 327
Cdd:PTZ00121 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAakkkadeakkkAEEKKKAD 1434
|
250 260 270
....*....|....*....|....*....|.
gi 564349812 328 KAMEEAV-KRTRDELVEYVREQRRLDQVTRQ 357
Cdd:PTZ00121 1435 EAKKKAEeAKKADEAKKKAEEAKKAEEAKKK 1465
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
98-210 |
7.18e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 38.52 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 98 VHVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQALLQsSVKQQLDAI 177
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIE-EIQELKEEL 480
|
90 100 110
....*....|....*....|....*....|....*
gi 564349812 178 EKQY--VSAIEKQAHRCEELLHAQHQRLLEVLDTE 210
Cdd:COG0542 481 EQRYgkIPELEKELAELEEELAELAPLLREEVTEE 515
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
103-323 |
8.88e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 37.89 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 103 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQALL---QSSVKQQLDAIEK 179
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIeerREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 180 Q-----YVSAIEKQA------HRCEEL--LHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKetlgkcLQEEMQKNKE 246
Cdd:COG3883 98 SggsvsYLDVLLGSEsfsdflDRLSALskIADADADLLEELKADKAELEAKKAELEAKLAELEA------LKAELEAAKA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564349812 247 TLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQ 323
Cdd:COG3883 172 ELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAA 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
117-343 |
9.43e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.36 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 117 KASEEEKQRIKKDVESLMEKHSVLEK-----DFLKEKEQDAVSFQARYRELQALLQSSVKQQLDAIEKQYvSAIEKQAHR 191
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDareqiELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRL-ELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 192 CEELLhAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKcLQEEMQKNKETLESAVKLEKEAMKDVIT-----KA 266
Cdd:COG4913 300 LRAEL-ARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ-LEREIERLERELEERERRRARLEALLAAlglplPA 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564349812 267 VEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRmsQEAVKAAIAE-EQRRSekAMEEAVKRTRDELVE 343
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE--LRELEAEIASlERRKS--NIPARLLALRDALAE 451
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
106-350 |
9.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.20 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 106 RQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdavsfQARYRELQALLQSSVKQQLDAIEKQyvsai 185
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-----EAKKADEAKKKAEEAKKKADAAKKK----- 1337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 186 EKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKETLGKcLQEEMQKNKETLESAVKLEKEAmkDVITK 265
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEE--KAEAAEKKKEEAKKKADAAKK-KAEEKKKADEAKKKAEEDKKKA--DELKK 1412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564349812 266 AVEEER--ENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEavKRTRDELVE 343
Cdd:PTZ00121 1413 AAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE--AKKADEAKK 1490
|
....*..
gi 564349812 344 YVREQRR 350
Cdd:PTZ00121 1491 KAEEAKK 1497
|
|
|