|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
611-1253 |
1.07e-47 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 186.53 E-value: 1.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILE--VSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRR--------------LEESEGE 674
Cdd:pfam01576 376 EKAKQALEseNAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKlsklqselesvsslLNEAEGK 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 675 LRKSLEELFQVKMEREQHQ--------------TEIRDLQDQ---LSEMHDELDSTKRSEDREKGALIEELLQAKQDLQD 737
Cdd:pfam01576 456 NIKLSKDVSSLESQLQDTQellqeetrqklnlsTRLRQLEDErnsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEE 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 738 LLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQeMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEAD 817
Cdd:pfam01576 536 DAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDK-LEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEK 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 818 LREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKEL 897
Cdd:pfam01576 615 AISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQV 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 898 EQARRELS------QVSQEQKELLE--------------KLRDEA--EQKEQLRKLKNEMESERwhldktiEKLQKEMAD 955
Cdd:pfam01576 695 EEMKTQLEeledelQATEDAKLRLEvnmqalkaqferdlQARDEQgeEKRRQLVKQVRELEAEL-------EDERKQRAQ 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 956 IAEASRTSSLELQKQLGEYKEKNR------RELAEMQTQLKEKCLEVEKARLA-----ASKMQDELRLK---------EE 1015
Cdd:pfam01576 768 AVAAKKKLELDLKELEAQIDAANKgreeavKQLKKLQAQMKDLQRELEEARASrdeilAQSKESEKKLKnleaellqlQE 847
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1016 ELQDYQRAEEEALTKRQLLEQSLKDleyELEAKSHLKDDRSRLikqmEDKVSQLEIELEEERTNADLLSERITWSREQME 1095
Cdd:pfam01576 848 DLAASERARRQAQQERDELADEIAS---GASGKSALQDEKRRL----EARIAQLEEELEEEQSNTELLNDRLRKSTLQVE 920
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1096 QMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRL 1175
Cdd:pfam01576 921 QLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRT 1000
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1176 ERKVKELVMQVDDEHL---SLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKG 1252
Cdd:pfam01576 1001 EKKLKEVLLQVEDERRhadQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTLKSK 1080
|
.
gi 568961968 1253 L 1253
Cdd:pfam01576 1081 L 1081
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
749-1290 |
3.82e-29 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 126.59 E-value: 3.82e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 749 LRKRERELTALKgalkeevsshDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENE 828
Cdd:COG1196 222 LKELEAELLLLK----------LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 829 KLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVS 908
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 909 QEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEyKEKNRRELAEMQTQ 988
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 989 LKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA-KSHLKDDRSRLIKQMEDKVS 1067
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1068 QLEIELEEERTNAD--LLSERITWSREQMEQMRSELLQEKAAKQD-LECDKISLERQNKDLKSRIIHLEGsyRSSKEGLV 1144
Cdd:COG1196 531 GVEAAYEAALEAALaaALQNIVVEDDEVAAAAIEYLKAAKAGRATfLPLDKIRARAALAAALARGAIGAA--VDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1145 VQMEARIAELEDRLENEERDRANLQLSNRRL-----ERKVKELVMQVDDEHLSLTDQ--KDQLSLRLKAMKRQVEEAEEE 1217
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAvtlagRLREVTLEGEGGSAGGSLTGGsrRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 1218 IDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLKTLSSKVLDDSDDDDLSSDAGSLYEAPLSYAFPKD 1290
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
641-1239 |
2.06e-28 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 123.89 E-value: 2.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 641 ERMREDLEELR-VRHQ--SQVE------ETA----TLQRRLEESEGEL-----RKSLEELFQVKMEREQHQTEIRDLQDQ 702
Cdd:COG1196 182 EATEENLERLEdILGEleRQLEplerqaEKAeryrELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 703 LSEMHDELDsTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEqyd 782
Cdd:COG1196 262 LAELEAELE-ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE--- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 783 aELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETL 862
Cdd:COG1196 338 -ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 863 RKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWhl 942
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL-- 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 943 dktiekLQKEMADIAEASRTSSLELQKQLGeyKEKNRRELAEMQTqlKEKCLEVEKARLAASKMQDELRLKEEELQDYQR 1022
Cdd:COG1196 495 ------LLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIG--VEAAYEAALEAALAAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1023 AEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTN---ADLLSERITWSREQMEQMRS 1099
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTllgRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1100 ELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSyRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKV 1179
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 1180 KELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEqMG-VN 1239
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA-LGpVN 783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-1250 |
3.23e-28 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 123.63 E-value: 3.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQ-QQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQ---- 684
Cdd:TIGR02168 220 AELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANeisr 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 685 VKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDR------EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTA 758
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDElaeelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 759 LKGALKEEVSSHDQEMDKLKeqydAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLRE------------KVLKEE 826
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLN----NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaeleeleeelEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 827 NEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEE------ALVHARK---------------EEKE 885
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSglsgilgvlselisvDEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 886 ATCARRALE--------KELEQARRELSqvSQEQKEL-------LEKLRDEAEQKEQLRKLKNEMESERWHLD--KTIEK 948
Cdd:TIGR02168 536 EAAIEAALGgrlqavvvENLNAAKKAIA--FLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDlvKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 949 LQKEMAD------IAEaSRTSSLELQKQLGE------------------------------YKEKNRRELAEMQTQLKEK 992
Cdd:TIGR02168 614 LRKALSYllggvlVVD-DLDNALELAKKLRPgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 993 CLEVEKARLAASKMQDELrlkEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIE 1072
Cdd:TIGR02168 693 IAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1073 LEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEgSYRSSKEGLVVQMEARIA 1152
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE-RRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1153 ELEDRLENEERDRANLQLSNRRLERKVKElvmqvddehlsLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQREL 1232
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELEA-----------LLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730
....*....|....*...
gi 568961968 1233 EEQMGVNEQLQGQLNSLK 1250
Cdd:TIGR02168 918 EELREKLAQLELRLEGLE 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
611-1236 |
2.04e-27 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 120.81 E-value: 2.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMERE 690
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 691 QHQTEIRDLQDQLSEMHDELDstkrsedrekgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSH 770
Cdd:COG1196 306 RLEERRRELEERLEELEEELA-----------ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 771 DQEMDKLKEQYDAELQALRESVEEatknvevlasrsnssEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMED 850
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAEL---------------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 851 VKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRD--EAEQKEQL 928
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 929 RKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAE----------MQTQLKEKCLEVEK 998
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkirarAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 999 ARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERT 1078
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1079 NADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRL 1158
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1159 ENEERDRANLqlsnRRLERKVKEL--V-MQVDDEHlsltdqkDQLSLRLKAMKRQVEEAEEEIDRLEsskkKLQRELEEQ 1235
Cdd:COG1196 760 PDLEELEREL----ERLEREIEALgpVnLLAIEEY-------EELEERYDFLSEQREDLEEARETLE----EAIEEIDRE 824
|
.
gi 568961968 1236 M 1236
Cdd:COG1196 825 T 825
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
709-1254 |
1.69e-25 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 114.78 E-value: 1.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 709 ELDSTKRSEDREKgALIEELLQAKQDLQDLLIAKEEQEDLL-RKRERELTALKGALKEevsshdqeMDKLKEQYDAELQA 787
Cdd:TIGR02169 178 ELEEVEENIERLD-LIIDEKRQQLERLRREREKAERYQALLkEKREYEGYELLKEKEA--------LERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 788 LRESVEEATKNVEVLASRSNSSEQSQAEADLREKVL--------KEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAK 859
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 860 ETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESER 939
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 940 WHLDKTIEKLQKEMADIaEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQD 1019
Cdd:TIGR02169 409 DRLQEELQRLSEELADL-NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1020 YQRAEEEALTKRQLLEQSLKdleYELEAKSHLKDDR-------SRLIKQMEDKVSQLEI-----------ELEEERTNAD 1081
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVR---GGRAVEEVLKASIqgvhgtvAQLGSVGERYATAIEVaagnrlnnvvvEDDAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1082 LLSERITWSR------EQMEQMRSEL-LQEKAAKQDLECDKISLERQ--------------------NKDL--KSRIIHL 1132
Cdd:TIGR02169 565 ELLKRRKAGRatflplNKMRDERRDLsILSEDGVIGFAVDLVEFDPKyepafkyvfgdtlvvedieaARRLmgKYRMVTL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGS-----------YRSSKEGLVV--QMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLS------- 1192
Cdd:TIGR02169 645 EGElfeksgamtggSRAPRGGILFsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKigeieke 724
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1193 ---LTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLR 1254
Cdd:TIGR02169 725 ieqLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
604-1097 |
4.87e-25 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 113.11 E-value: 4.87e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELF 683
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 763
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KEEvsshdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAE-LERRAA 842
Cdd:COG1196 442 EAL-----EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQA-RRELSQVSQEQKELLEKLRDE 921
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtFLPLDKIRARAALAAALARGA 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMESERWH------LDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLE 995
Cdd:COG1196 597 IGAAVDLVASDLREADARYYvlgdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 996 VEKARLAASKMQDELRLKEEELQDyQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEE 1075
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALL-AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500
....*....|....*....|....
gi 568961968 1076 ERTNADL--LSERITWSREQMEQM 1097
Cdd:COG1196 756 LPEPPDLeeLERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-1129 |
8.41e-25 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 112.34 E-value: 8.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMER 689
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKREReltalkgaLKEEVSS 769
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER--------LEEELEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 770 HDQEMDKLKEQYDAELQALRESVEEatknvevLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQME 849
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEE-------EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 850 DVKGDEAQAKETLRKCESEVQQLEEALVH--ARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ 927
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAvlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 928 LRKLKNEMESERWHLDKTIEKLqkemADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQ 1007
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAA----VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1008 D-ELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSER 1086
Cdd:COG1196 655 GgSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568961968 1087 ITWSREQMEQMRSELLQEKAAKQDLEcDKISLERQNKDLKSRI 1129
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPP-DLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
609-1256 |
1.43e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 111.69 E-value: 1.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 609 LDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMRE-DLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKM 687
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDELDSTKrSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEV 767
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 SSHDQEMDKLKEQYD---AELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQL 844
Cdd:TIGR02168 347 EELKEELESLEAELEeleAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 845 QRQMEDVKGDEAQA-----KETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLR 919
Cdd:TIGR02168 427 LKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 920 DEAEQKEQLRKLKNEME--SERWHLDK-----------------TIEKLQKEMADIA-----EASRTSSLELQKQLGEYK 975
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGvlSELISVDEgyeaaieaalggrlqavVVENLNAAKKAIAflkqnELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 976 EKNRRELAEMQTQLKEKCLEVEKARLAASKM------------------------------------------------- 1006
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsa 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1007 ---------QDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEER 1077
Cdd:TIGR02168 667 ktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1078 TNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYrSSKEGLVVQMEARIAELEDR 1157
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1158 LENEERDRANLQLSNRRLERKVKEL---VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQ---RE 1231
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSeelRE 905
|
730 740
....*....|....*....|....*
gi 568961968 1232 LEEQMGVNEQLQGQLNSLKKGLRLK 1256
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELR 930
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
611-1242 |
1.68e-23 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 108.23 E-value: 1.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRK-SLEELFQVKMER 689
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQTEIRDLQDQLSEMHDELdstKRSEDREkgalieellqakQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSS 769
Cdd:TIGR02169 297 GELEAEIASLERSIAEKEREL---EDAEERL------------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 770 HDQEMDKLK---EQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQR 846
Cdd:TIGR02169 362 LKEELEDLRaelEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 847 QMEDvkgdeaqAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLR------- 919
Cdd:TIGR02169 442 EKED-------KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggravee 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 920 -----------------------------------------DEAEQKEQLRKLK------------NEMESERWHLDKTI 946
Cdd:TIGR02169 515 vlkasiqgvhgtvaqlgsvgeryataievaagnrlnnvvveDDAVAKEAIELLKrrkagratflplNKMRDERRDLSILS 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 947 EKLQKEMA-DIAEASR---------------TSSLELQKQL----------GEYKEKN---------RRELAEMQTQLKE 991
Cdd:TIGR02169 595 EDGVIGFAvDLVEFDPkyepafkyvfgdtlvVEDIEAARRLmgkyrmvtleGELFEKSgamtggsraPRGGILFSRSEPA 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 992 KCLEVeKARLaaSKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAkshLKDDRSRL---IKQMEDKVSQ 1068
Cdd:TIGR02169 675 ELQRL-RERL--EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ---LEQEEEKLkerLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1069 LEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKI-----SLERQNKDLKSRIIHLEGSYRSSK--- 1140
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIqaelsKLEEEVSRIEARLREIEQKLNRLTlek 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1141 ---EGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKEL---VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEA 1214
Cdd:TIGR02169 829 eylEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
730 740
....*....|....*....|....*...
gi 568961968 1215 EEEIDRLESSKKKLQRELEEQMGVNEQL 1242
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
722-1251 |
8.19e-23 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 105.92 E-value: 8.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 722 GALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKgalkeevsshdQEMDKLKEqydaELQALRESVEEATKNVEV 801
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVL-----------REINEISS----ELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 802 LASRSNSSEQsqaeadlrekvLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCEsEVQQLEEALVHARK 881
Cdd:PRK03918 233 LEELKEEIEE-----------LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 882 EEKEATCARRALEKELEQARRELSQVsqeqKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASR 961
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGI----EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 962 tssleLQKQLGEY-KEKNRRELAEmqtqLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEA-----LTKRQLLE 1035
Cdd:PRK03918 377 -----LKKRLTGLtPEKLEKELEE----LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1036 QSLKDL--EYELEAKSHLKDdrsrlIKQMEDKVSQLEIELEEERtNADLLSERITWSREQMEQMRSelLQEKAAKQDLEc 1113
Cdd:PRK03918 448 EHRKELleEYTAELKRIEKE-----LKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKE--LEEKLKKYNLE- 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1114 dkiSLERQNKD---LKSRIIHLEGSYRSSKEGL--VVQMEARIAELEDRLENEERDRANLqlsNRRLERKVKELVMQVDD 1188
Cdd:PRK03918 519 ---ELEKKAEEyekLKEKLIKLKGEIKSLKKELekLEELKKKLAELEKKLDELEEELAEL---LKELEELGFESVEELEE 592
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 1189 EHLSLTDQKDQLsLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKK 1251
Cdd:PRK03918 593 RLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
613-1239 |
1.40e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.14 E-value: 1.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 613 NKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQH 692
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 693 QTEIRDLQDQLSEMHDELDSTKRsedrekgaLIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQ 772
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELES--------RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 773 EMDKL-KEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDV 851
Cdd:TIGR02168 422 EIEELlKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 852 KGDEAQAKETL--RKCESEVQQLEEALVHARKE---EKEATCARRA---LEKELEQARRELSqvSQEQKEL-------LE 916
Cdd:TIGR02168 502 EGFSEGVKALLknQSGLSGILGVLSELISVDEGyeaAIEAALGGRLqavVVENLNAAKKAIA--FLKQNELgrvtflpLD 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 917 KLRDEAEQKEQLRKLKNEMESERWHLD--KTIEKLQKEMAD------IAEaSRTSSLELQKQLGEY-------------- 974
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDlvKFDPKLRKALSYllggvlVVD-DLDNALELAKKLRPGyrivtldgdlvrpg 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 975 ----------------KEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELrlkEEELQDYQRAEEEALTKRQLLEQSL 1038
Cdd:TIGR02168 659 gvitggsaktnssileRRREIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKDL 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1039 KDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAA----------- 1107
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelraeltll 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1108 ----------KQDLECDKISLERQNKDLKSRIIHLEGSyRSSKEGLVVQMEARIAELEDRLE---------NEERDRANL 1168
Cdd:TIGR02168 816 neeaanlrerLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEallneraslEEALALLRS 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1169 QLSNRRLE-RKVKELVMQVDDEHLSLTDQKDQLSLRLKAMK----------------------RQVEEAEEEIDRLESSK 1225
Cdd:TIGR02168 895 ELEELSEElRELESKRSELRRELEELREKLAQLELRLEGLEvridnlqerlseeysltleeaeALENKIEDDEEEARRRL 974
|
730
....*....|....
gi 568961968 1226 KKLQRELEEQMGVN 1239
Cdd:TIGR02168 975 KRLENKIKELGPVN 988
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
696-1234 |
3.85e-22 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 103.61 E-value: 3.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 696 IRDLQDQLSEMHDELDSTKRSEDR--EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG---ALKEEVSSH 770
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELikEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEeieELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 771 DQEMDKLKEQydaeLQALRESVEEATKNVEVLASRSNSSEQSQAEAD-------LREKVLKEENEkLQGRIAELERRAAQ 843
Cdd:PRK03918 251 EGSKRKLEEK----IRELEERIEELKKEIEELEEKVKELKELKEKAEeyiklseFYEEYLDELRE-IEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQMEDVKGDEAQAKEtLRKCESEVQQLEEALVHARKEEKEAtcarRALEKELEQARRELSQVSQEqkELLEKLRDEAE 923
Cdd:PRK03918 326 IEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYEEA----KAKKEELERLKKRLTGLTPE--KLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 924 QKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSL---EL-QKQLGEYKEKNRRELAEMQTQLKEKCLEVEKA 999
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgrELtEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1000 RLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKddrSRLIKqMEDKVSQLEIELEEErtn 1079
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK---EKLIK-LKGEIKSLKKELEKL--- 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 adllseritwsreqmEQMRSELLQEKAAKQDLECDKISLERQ--------NKDLKSRIIHLEGSYRSSKEglVVQMEARI 1151
Cdd:PRK03918 552 ---------------EELKKKLAELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPFYNEYLE--LKDAEKEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1152 AELEDRLENEERD----RANLQLSNRRLERKVKEL----VMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1223
Cdd:PRK03918 615 EREEKELKKLEEEldkaFEELAETEKRLEELRKELeeleKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570
....*....|.
gi 568961968 1224 SKKKLQRELEE 1234
Cdd:PRK03918 695 TLEKLKEELEE 705
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
559-1239 |
2.57e-21 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 101.30 E-value: 2.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 559 LKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLE----MKNQQ 634
Cdd:TIGR02169 281 IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRrdklTEEYA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 635 NIKEERERMREDLEELRVRHQSQVEETATLQRRLEesegelrksleelfQVKMEREQHQTEIRDLQDQLSEMHDELDSTK 714
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLE--------------KLKREINELKRELDRLQEELQRLSEELADLN 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 715 rsedrekgaliEELLQAKQDLQDLLIAKEEQEDLLRKRERELTalkgALKEEVSSHDQEMDKLKEqydaELQALRESVEE 794
Cdd:TIGR02169 427 -----------AAIAGIEAKINELEEEKEDKALEIKKQEWKLE----QLAADLSKYEQELYDLKE----EYDRVEKELSK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 795 ATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKG---------DEAQAKET---- 861
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGnrlnnvvveDDAVAKEAiell 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 ---------------LRKCESEVQQLEE------ALVHARKEEKEATCARRALE-----KELEQARRELSQV-------- 907
Cdd:TIGR02169 568 krrkagratflplnkMRDERRDLSILSEdgvigfAVDLVEFDPKYEPAFKYVFGdtlvvEDIEAARRLMGKYrmvtlege 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 908 ------------------SQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQk 969
Cdd:TIGR02169 648 lfeksgamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE- 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 970 QLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEalTKRQLLEQSLKDLEYELEAks 1049
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSK-- 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1050 hLKDDRSRLIKQMEDkvsqLEIELEEertnadllseritwsreqmEQMRSELLQEKaaKQDLECDKISLERQNKDLKSRI 1129
Cdd:TIGR02169 803 -LEEEVSRIEARLRE----IEQKLNR-------------------LTLEKEYLEKE--IQELQEQRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1130 IHLEGSYRSSKEGLvVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQK-------DQLSL 1202
Cdd:TIGR02169 857 ENLNGKKEELEEEL-EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKaklealeEELSE 935
|
730 740 750
....*....|....*....|....*....|....*....
gi 568961968 1203 RLKAMKRQVEEAEEE--IDRLESSKKKLQRELEEQMGVN 1239
Cdd:TIGR02169 936 IEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALEPVN 974
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
638-1261 |
3.18e-21 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 100.91 E-value: 3.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 638 EERERMREDLEELRVR--------------------HQSQVEETATLQRRLEESEG-----ELRKSLEELFQVKMEREQH 692
Cdd:TIGR02169 170 RKKEKALEELEEVEENierldliidekrqqlerlrrEREKAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 693 QTEIRDLQDQLSEMHDELDSTKR------SEDREKGAliEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALK-- 764
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQlleelnKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAkl 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 765 -EEVSSHDQEMDKLK---EQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERR 840
Cdd:TIGR02169 328 eAEIDKLLAEIEELEreiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 841 AAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRD 920
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 921 EAEQKEQLRKLKNEMESErwhldktiEKLQKEMADIAEASRTSSLELQKQLGEYKEK----------NRRELAEMQTQL- 989
Cdd:TIGR02169 488 LQRELAEAEAQARASEER--------VRGGRAVEEVLKASIQGVHGTVAQLGSVGERyataievaagNRLNNVVVEDDAv 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 990 KEKCLEVEKAR-------LAASKMQDELRLKEEELQD------------------------------------------- 1019
Cdd:TIGR02169 560 AKEAIELLKRRkagratfLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgky 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1020 -------------------------------YQRAEEEALTKR-QLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVS 1067
Cdd:TIGR02169 640 rmvtlegelfeksgamtggsraprggilfsrSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1068 QLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSK----EGL 1143
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAE 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1144 VVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHL---SLTDQKDQLSLRLKAMKRQVEEAEEEIDR 1220
Cdd:TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEqikSIEKEIENLNGKKEELEEELEELEAALRD 879
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 568961968 1221 LESSKKKLQRE---LEEQMGVNEQLQGQLNSL--KKGLRLKTLSSK 1261
Cdd:TIGR02169 880 LESRLGDLKKErdeLEAQLRELERKIEELEAQieKKRKRLSELKAK 925
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
604-1127 |
5.77e-21 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 99.73 E-value: 5.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQlemknqqNIKEERERMREDLEELrvrhQSQVEETATLQRRLEESEGELRKSLEELF 683
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIE-------RYEEQREQARETRDEA----DEVLEEHEERREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREkGALIEELLQAKQDLQDlliAKEEQEDLLRKRERELTALKG-- 761
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD-DADAEAVEARREELED---RDEELRDRLEECRVAAQAHNEea 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 762 -ALKEEVSSHDQEMDKLKEQ---YDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAEL 837
Cdd:PRK02224 345 eSLREDADDLEERAEELREEaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 838 ERRAAQLQRQMEDVKGDEAQAKETLR--KCESEVQQLEEALVHARKEEKEAtcARRALEKELEQARRELSQVSQEqkelL 915
Cdd:PRK02224 425 REREAELEATLRTARERVEEAEALLEagKCPECGQPVEGSPHVETIEEDRE--RVEELEAELEDLEEEVEEVEER----L 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 916 EKLRDEAEQKEQLRKLKNEMEserwhldkTIEKLQKEMADIAEASRTSSLELQKQLGEYKEknrrELAEMQTQLKEKCLE 995
Cdd:PRK02224 499 ERAEDLVEAEDRIERLEERRE--------DLEELIAERRETIEEKRERAEELRERAAELEA----EAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 996 VEKARLAASKMQDELRLKEEELQDYQRAeEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEE 1075
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE 645
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 568961968 1076 ERTNAdlLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKS 1127
Cdd:PRK02224 646 ARIEE--AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
641-1235 |
6.18e-21 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 99.73 E-value: 6.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 641 ERMREDLEELRVRHQSQVE--ETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMhdeldstkrsed 718
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEekEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH------------ 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 719 REKGALIEELlqaKQDLQDLLIAKEEQEdllrkREREltalkgALKEEVSSHDQEMDKLKEQYD---AELQALRESVEEA 795
Cdd:PRK02224 247 EERREELETL---EAEIEDLRETIAETE-----RERE------ELAEEVRDLRERLEELEEERDdllAEAGLDDADAEAV 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 796 TKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEA 875
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 876 LVHARKEEKEATCARRALEKELEQARRELSQVSQEQKEL---LEKLRDEAEQKEQL------------------------ 928
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELeatLRTARERVEEAEALleagkcpecgqpvegsphvetiee 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 929 -RKLKNEMESERWHLDKTIEKLQKEMaDIAEASRTSSLELQKqLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQ 1007
Cdd:PRK02224 473 dRERVEELEAELEDLEEEVEEVEERL-ERAEDLVEAEDRIER-LEERREDLEELIAERRETIEEKRERAEELRERAAELE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1008 DELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAkshLKDDRSRLikqmeDKVSQLEIELEEERTNADLLSERI 1087
Cdd:PRK02224 551 AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES---LERIRTLL-----AAIADAEDEIERLREKREALAELN 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1088 TWSREQMEQmRSELLQEKAAKqdLECDKISLERQNKDlksriihlegsyrsskeglvvQMEARIAELEDRLENEERDRAN 1167
Cdd:PRK02224 623 DERRERLAE-KRERKRELEAE--FDEARIEEAREDKE---------------------RAEEYLEQVEEKLDELREERDD 678
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 1168 LQLSNRRLERKVKELVmqvddehlSLTDQKDQLSLRLKAMKRQVEEAEEeidrLESSKKKLQRELEEQ 1235
Cdd:PRK02224 679 LQAEIGAVENELEELE--------ELRERREALENRVEALEALYDEAEE----LESMYGDLRAELRQR 734
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
609-1120 |
5.95e-19 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 93.20 E-value: 5.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 609 LDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKmE 688
Cdd:PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-E 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 689 REQHQTEIRDLQDQ---LSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDlLRKRERELTALKGALKE 765
Cdd:PRK03918 281 KVKELKELKEKAEEyikLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE-LKKKLKELEKRLEELEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 766 EVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEvlasrsnsseqsqaEADLREKVLKEENEKLQGRIAELERRAAQLQ 845
Cdd:PRK03918 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE--------------ELEKAKEEIEEEISKITARIGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 RQMEDVKG------------DEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARR--ELSQVSQEQ 911
Cdd:PRK03918 426 KAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 912 KEL--------LEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQ---KEMADIAEASRTSSLELQKQLGEYKEKNRR 980
Cdd:PRK03918 506 KELeeklkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelkKKLAELEKKLDELEEELAELLKELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 981 ELAEMQTQLKEkCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRliK 1060
Cdd:PRK03918 586 SVEELEERLKE-LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY--E 662
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1061 QMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLER 1120
Cdd:PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-1235 |
6.13e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 6.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 567 EDATKRKVNLVFEKIQTLKSRAAGSAQgSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMRED 646
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQ-LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 647 LEE------------------LRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQ-TEIRDLQDQLSEMH 707
Cdd:TIGR02168 377 LEEqletlrskvaqlelqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 708 DELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHD-----QEMDKLKEQYD 782
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlSELISVDEGYE 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 783 AELQA---------LRESVEEATKNVEVLASRS---------NSSEQSQAEADLREkvLKEENEKLQGRIAELERRAAQL 844
Cdd:TIGR02168 537 AAIEAalggrlqavVVENLNAAKKAIAFLKQNElgrvtflplDSIKGTEIQGNDRE--ILKNIEGFLGVAKDLVKFDPKL 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 845 QRQMEDVKG------DEAQAKETLRKCESEVQ--QLEEALVHAR-------KEEKEATCARRA----LEKELEQARRELS 905
Cdd:TIGR02168 615 RKALSYLLGgvlvvdDLDNALELAKKLRPGYRivTLDGDLVRPGgvitggsAKTNSSILERRReieeLEEKIEELEEKIA 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 906 QVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELqKQLGEYKEKNRRELAEM 985
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEA 773
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 986 QTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDK 1065
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1066 VSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLvV 1145
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL-E 932
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1146 QMEARIAELEDRLENEERD--------RANLQLSNRRLERKVKELVMQVD---DEHLSLTDQKDQLSLRLKAMKRQVEEA 1214
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEYSLtleeaealENKIEDDEEEARRRLKRLENKIKelgPVNLAAIEEYEELKERYDFLTAQKEDL 1012
|
730 740
....*....|....*....|.
gi 568961968 1215 EEEIDRLESSKKKLQRELEEQ 1235
Cdd:TIGR02168 1013 TEAKETLEEAIEEIDREARER 1033
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
677-1236 |
1.27e-18 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 92.29 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 677 KSLEELFQVKM-EREQHQTEIRDLQ---DQLSEMHDELDSTKRSEDrekgaLIEELLQAKQDLQDLLIAKEEQEDLLRKR 752
Cdd:COG4913 207 GDLDDFVREYMlEEPDTFEAADALVehfDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAAL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 753 ERELTALKGALKEEvsshdqemdkLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADL-REKVLKEENEKLQ 831
Cdd:COG4913 282 RLWFAQRRLELLEA----------ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 832 GRIAELERRAAQLQRQMEDVK----GDE-------AQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQA 900
Cdd:COG4913 352 RELEERERRRARLEALLAALGlplpASAeefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 901 RRELSQVSQEQKELLEKLRDEAEQKE----------QLRKlknemESERWHldKTIEKL-----------QKEMADIAEA 959
Cdd:COG4913 432 ERRKSNIPARLLALRDALAEALGLDEaelpfvgeliEVRP-----EEERWR--GAIERVlggfaltllvpPEHYAAALRW 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 960 SRTSSLELQKQLGEYKEKNRRELAEmqtQLKEKCLeVEKARLAASKMQDELRLK------------EEELQDYQRaeeeA 1027
Cdd:COG4913 505 VNRLHLRGRLVYERVRTGLPDPERP---RLDPDSL-AGKLDFKPHPFRAWLEAElgrrfdyvcvdsPEELRRHPR----A 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1028 LTKRQLLEQSlkdleyeleAKSHLKDDRSRLIKQM------EDKVSQLEIELEEERTNADLLSERITWSREQMEQM--RS 1099
Cdd:COG4913 577 ITRAGQVKGN---------GTRHEKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALqeRR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1100 ELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEgsyRSSKEglVVQMEARIAELEDRLENEERDRANLQLSNRRLERKV 1179
Cdd:COG4913 648 EALQRLAEYSWDEIDVASAEREIAELEAELERLD---ASSDD--LAALEEQLEELEAELEELEEELDELKGEIGRLEKEL 722
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961968 1180 KELVMQVD---------------DEHLSLTDQKDQLSLRlKAMKRQVEEAEEEIDRLESSKKKLQRELEEQM 1236
Cdd:COG4913 723 EQAEEELDelqdrleaaedlarlELRALLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
636-1255 |
1.70e-18 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 91.82 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 636 IKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKsleELFQVKMEREQHQTEIRDLQDQLSEMHDElDSTKR 715
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNG---ELSAADAAVAKDRSELEALEDQHGAFLDA-DIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 716 SEDREKGALIEELLQAKQDLQDLLIAKeeQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEA 795
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKALTGK--HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQAL 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 796 tknvevlasrsNSSEQSQAEADLREkvLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEA------QAKETLRKCESEV 869
Cdd:pfam12128 421 -----------ESELREQLEAGKLE--FNEEEYRLKSRLGELKLRLNQATATPELLLQLENfderieRAREEQEAANAEV 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 870 QQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQ----EQKELLEKLRDEAEQKEQlrklknemeserwHLDKT 945
Cdd:pfam12128 488 ERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELqlfpQAGTLLHFLRKEAPDWEQ-------------SIGKV 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 946 IEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRR----ELAEMQTQLKEKCLEVEKARLAASKMQ----DELRLKEEEL 1017
Cdd:pfam12128 555 ISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRidvpEWAASEEELRERLDKAEEALQSAREKQaaaeEQLVQANGEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1018 QDYQRAEEEALTKRQLLEQSLKDLEYELEA-KSHLKDDRSRLIKQMEDKVSQLEIELEEertnadLLSERITWSREQMEQ 1096
Cdd:pfam12128 635 EKASREETFARTALKNARLDLRRLFDEKQSeKDKKNKALAERKDSANERLNSLEAQLKQ------LDKKHQAWLEEQKEQ 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1097 MRSELLQEKAAKQDLECDKislERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAEL---EDRLENEERDRANLQLSNR 1173
Cdd:pfam12128 709 KREARTEKQAYWQVVEGAL---DAQLALLKAAIAARRSGAKAELKALETWYKRDLASLgvdPDVIAKLKREIRTLERKIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1174 RLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGL 1253
Cdd:pfam12128 786 RIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
|
..
gi 568961968 1254 RL 1255
Cdd:pfam12128 866 RC 867
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-1227 |
2.88e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 91.28 E-value: 2.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRD 698
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 699 LQDQLSEMHDELDSTKRSEDR---EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALK---EEVSSHDQ 772
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRlqeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEqlaADLSKYEQ 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 773 EMDKLKEqydaELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVK 852
Cdd:TIGR02169 470 ELYDLKE----EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAA 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 853 G---------DEAQAKET-------------------LRKCESEVQQLEE------ALVHARKEEKEATCARRALE---- 894
Cdd:TIGR02169 546 GnrlnnvvveDDAVAKEAiellkrrkagratflplnkMRDERRDLSILSEdgvigfAVDLVEFDPKYEPAFKYVFGdtlv 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 895 -KELEQARRELSQV--------------------------SQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIE 947
Cdd:TIGR02169 626 vEDIEAARRLMGKYrmvtlegelfeksgamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 948 KLQKEMADIAEASRTSSLELQkQLGEYKEKNRRELAEMQTQLKEK-----CLEVEKARLAA------------------- 1003
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIE-QLEQEEEKLKERLEELEEDLSSLeqeieNVKSELKELEArieeleedlhkleealndl 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1004 ----------------SKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVS 1067
Cdd:TIGR02169 785 earlshsripeiqaelSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1068 QLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIihlegsyrSSKEGLVVQM 1147
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--------EALEEELSEI 936
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1148 EARIAELEDRLEnEERDRANLQLSNRRLERKVKELV---MQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESS 1224
Cdd:TIGR02169 937 EDPKGEDEEIPE-EELSLEDVQAELQRVEEEIRALEpvnMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
...
gi 568961968 1225 KKK 1227
Cdd:TIGR02169 1016 KRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
655-1058 |
1.08e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.35 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 655 QSQVEETATLQRRLEESEGELRKSLEELfqvkmEREQHQTEI-RDLQDQLSEMhdeldstkrsedrEKGALIEELLQAKQ 733
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSL-----ERQAEKAERyKELKAELREL-------------ELALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 734 DLQDLLIAKEEQEDLLRKRERELTALKGALkEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQ 813
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKL-EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 814 AEADlrekvlkEENEKLQGRIAELERRAAQLQRQMEDVKGdeaqaketlrkcesEVQQLEEALVHARKEEKEATCARRAL 893
Cdd:TIGR02168 319 EELE-------AQLEELESKLDELAEELAELEEKLEELKE--------------ELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 894 EKELEQARRELSQVSQEQKELleklrdeAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAeasrtsslelqkqlge 973
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASL-------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE---------------- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 974 yKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKD 1053
Cdd:TIGR02168 435 -LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
....*
gi 568961968 1054 DRSRL 1058
Cdd:TIGR02168 514 NQSGL 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
637-1231 |
1.08e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 89.82 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 637 KEERERMREDLEELRVRHQSQVEETATLQRRLEESEG--------ELRKSLEElfQVKMEREQHQTEIRDLQDQLSEMHD 708
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKaeavkkaeEAKKDAEE--AKKAEEERNNEEIRKFEEARMAHFA 1266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 709 ELDSTKRSEDREKGaliEELLQAKQDLQDLLIAKEEQ----EDLLRKRERELTALKGALK-EEVSSHDQEMDKLKEQYDA 783
Cdd:PTZ00121 1267 RRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEkkkaDEAKKKAEEAKKADEAKKKaEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 784 ELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQgRIAELERRAAQLQRQMEDVKGDEAQAK--ET 861
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKKAAAAKKkaDE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 LRKCESEVQQLEEALVHA---RKEE---KEATCARRA--LEKELEQARR--ELSQVSQEQK--ELLEKLRDEAEQKEQLR 929
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAeeaKKADeakKKAEEAKKAeeAKKKAEEAKKadEAKKKAEEAKkaDEAKKKAEEAKKKADEA 1502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 930 KLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSlELQKQLGEYKEKNRRELAEMQTqlKEKCLEVEKARLAASKMQDE 1009
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD-EAKKAEEKKKADELKKAEELKK--AEEKKKAEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1010 LRlKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSEritw 1089
Cdd:PTZ00121 1580 LR-KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK---- 1654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1090 sREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELED-RLENEERDRANL 1168
Cdd:PTZ00121 1655 -AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEElKKAEEENKIKAE 1733
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1169 QLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEA--EEEIDRlESSKKKLQRE 1231
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDE-EDEKRRMEVD 1797
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
603-1250 |
1.10e-17 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 89.41 E-value: 1.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 603 SEGNSLLD-QKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEE 681
Cdd:pfam15921 95 NESNELHEkQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 682 LFQVKMEREQHQTEIR----DLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQD----LQDLLIAKEEQEDLLRKRE 753
Cdd:pfam15921 175 LRKMMLSHEGVLQEIRsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSES 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 754 RELTALKgalkeeVSSHDQEMDKLKEQYDAELQALRESVEEATknvevlaSRSNSseqSQAEADLREKVLKEENEKLQGR 833
Cdd:pfam15921 255 QNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSAR-------SQANS---IQSQLEIIQEQARNQNSMYMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 834 IAELERRAAQLQRQMEDVKgdeaqaketlRKCESEVQQLEEALVHArkeekeatcarralEKELEQARRELSQVSQEQKE 913
Cdd:pfam15921 319 LSDLESTVSQLRSELREAK----------RMYEDKIEELEKQLVLA--------------NSELTEARTERDQFSQESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 914 L---LEKLRDEAEQKEQLRKLKNEMESERWHLDK----TIEKLQKEMADI-AEASRTSSLeLQKQLGEYKEKNRRELAEM 985
Cdd:pfam15921 375 LddqLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsiTIDHLRRELDDRnMEVQRLEAL-LKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 986 Q------TQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYE---LEAKSHLKDDRS 1056
Cdd:pfam15921 454 QgkneslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEitkLRSRVDLKLQEL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1057 RLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEgSY 1136
Cdd:pfam15921 534 QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK-IL 612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1137 RSSKEGLVVQMEARIAEledrLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEE 1216
Cdd:pfam15921 613 KDKKDAKIRELEARVSD----LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688
|
650 660 670
....*....|....*....|....*....|....
gi 568961968 1217 EidrLESSKKKLQRELEEQMGVNEQLQGQLNSLK 1250
Cdd:pfam15921 689 E---METTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
565-1256 |
1.54e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 89.04 E-value: 1.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 565 DNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLIL-EVSELQQQLQLEMKNQQNIKEERERM 643
Cdd:PTZ00121 1037 NNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRAdEATEEAFGKAEEAKKTETGKAEEARK 1116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 644 REDLEElRVRHQSQVEET--ATLQRRLEESEgelrksleelfqvKMEREQHQTEIRDLQDQlsemhDELDSTKRSEDREK 721
Cdd:PTZ00121 1117 AEEAKK-KAEDARKAEEArkAEDARKAEEAR-------------KAEDAKRVEIARKAEDA-----RKAEEARKAEDAKK 1177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 722 galIEELLQAKQdlqdllIAKEEQedlLRKRErELTALKGALKEEVSSHDQEMDKLKEQYDAE----LQALRESVEEATK 797
Cdd:PTZ00121 1178 ---AEAARKAEE------VRKAEE---LRKAE-DARKAEAARKAEEERKAEEARKAEDAKKAEavkkAEEAKKDAEEAKK 1244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 798 NVEVlasRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDV-KGDEAQAKETLRKCESEVQQLEEAL 876
Cdd:PTZ00121 1245 AEEE---RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkKAEEKKKADEAKKKAEEAKKADEAK 1321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 877 VHARKEEKEATCARRALE---------KELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIE 947
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEeakkaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 948 KLQKEMADI--AEASRTSSLELQKQLGEYKE----KNRRELAEMQTQLKEKCLEVEKARLAASKMQ-----DELRLKEEE 1016
Cdd:PTZ00121 1402 EDKKKADELkkAAAAKKKADEAKKKAEEKKKadeaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkaDEAKKKAEE 1481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1017 LQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRL---IKQMEDKVSQLEIELEEERTNADLLsERITWSREQ 1093
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKadeAKKAEEAKKADEAKKAEEKKKADEL-KKAEELKKA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1094 MEQMRSEllQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSK----EGLVVQMEARIAELEDRLENEERDRANLQ 1169
Cdd:PTZ00121 1561 EEKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaEEAKKAEEAKIKAEELKKAEEEKKKVEQL 1638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1170 LSNRRLERKVKELVMQVDDEHLSltdQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSL 1249
Cdd:PTZ00121 1639 KKKEAEEKKKAEELKKAEEENKI---KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
....*..
gi 568961968 1250 KKGLRLK 1256
Cdd:PTZ00121 1716 KKAEELK 1722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
890-1254 |
1.42e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 890 RRALEKELEQARRELSQVSQEQKEL---LEKLRDEAEQKEQLRKLKNEMES-ERWHLDKTIEKLQKEMAdiaeasrtssl 965
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELerqLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELE----------- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 966 ELQKQLgeykEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYEL 1045
Cdd:TIGR02168 243 ELQEEL----KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1046 EAKS-HLKDDRSRLIKQmEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKD 1124
Cdd:TIGR02168 319 EELEaQLEELESKLDEL-AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1125 LKSRIIhlegsyrsskeglvvQMEARIAELEDRLENEERDRAnlQLSNRRLERKVKELVMQVDDEHLSLTDqkdqLSLRL 1204
Cdd:TIGR02168 398 LNNEIE---------------RLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEE----LQEEL 456
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 568961968 1205 KAMKRQVEEAEEEIDRLESSKKKLQRELeeqmgvnEQLQGQLNSLKKGLR 1254
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAEREL-------AQLQARLDSLERLQE 499
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
580-1245 |
3.82e-16 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 84.25 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 580 KIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVR---HQS 656
Cdd:TIGR00618 195 KAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARieeLRA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 657 QVEETATLQRRLEESEGELRKSLEE--LFQVKMEREQHQTEIRDLQDQL-SEMHDELDSTKRSEDREKGALIEELLQAKQ 733
Cdd:TIGR00618 275 QEAVLEETQERINRARKAAPLAAHIkaVTQIEQQAQRIHTELQSKMRSRaKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 734 DL-------QDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK-EQYDAELQALRESVEEATKNVevlasr 805
Cdd:TIGR00618 355 IHirdahevATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQrEQATIDTRTSAFRDLQGQLAH------ 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 806 snssEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKE 885
Cdd:TIGR00618 429 ----AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 886 ATCAR-------RALEKELEQARRELSQVSQEQKELLEKLRDEAEQ----KEQLRKLKNEMESERWHLDKTIEKLQkEMA 954
Cdd:TIGR00618 505 PLCGScihpnpaRQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQltseRKQRASLKEQMQEIQQSFSILTQCDN-RSK 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 955 DIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQ--------DYQRAEEE 1026
Cdd:TIGR00618 584 EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTAlhalqltlTQERVREH 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1027 ALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLlseritwsREQMEQMRSELLQEKA 1106
Cdd:TIGR00618 664 ALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE--------FNEIENASSSLGSDLA 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1107 AKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQ------LSNRRLERKVK 1180
Cdd:TIGR00618 736 AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDThllktlEAEIGQEIPSD 815
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961968 1181 ELVMQVDDEHL-----SLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQR--ELEEQMGVNEQLQGQ 1245
Cdd:TIGR00618 816 EDILNLQCETLvqeeeQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKiiQLSDKLNGINQIKIQ 887
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
633-1221 |
6.12e-16 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 83.43 E-value: 6.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 633 QQNIKEERERMR--EDLEELRVRHQSQVEETATLQR-----RLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSE 705
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYlraalRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 706 MHDELDSTKRSEDREKGALIEELlqaKQDLQDLliakeeqEDLLRKRERELTALKGALKeevsshdqemdKLKEQYDAEL 785
Cdd:COG4913 321 LREELDELEAQIRGNGGDRLEQL---EREIERL-------ERELEERERRRARLEALLA-----------ALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 786 QALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAketLRKC 865
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA---LGLD 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 866 ESEVQQLEEaLVHARKEEKE-ATCARRAL----------EKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKN- 933
Cdd:COG4913 457 EAELPFVGE-LIEVRPEEERwRGAIERVLggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDs 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 934 ---EMESE-----RWhldktiekLQKEMADIAEASRTSSLE-------------LQKQLGEYKEK--------------- 977
Cdd:COG4913 536 lagKLDFKphpfrAW--------LEAELGRRFDYVCVDSPEelrrhpraitragQVKGNGTRHEKddrrrirsryvlgfd 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 978 NRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEE---------------EALTKR----------- 1031
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaereiAELEAElerldassddl 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1032 QLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERI-TWSREQMEQMRSELLQEKAAKQD 1110
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArLELRALLEERFAAALGDAVEREL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1111 LEcdkiSLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANL-QLSNRRLERKVKELvmqvddE 1189
Cdd:COG4913 768 RE----NLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLdRLEEDGLPEYEERF------K 837
|
650 660 670
....*....|....*....|....*....|..
gi 568961968 1190 HLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRL 1221
Cdd:COG4913 838 ELLNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
607-1100 |
8.20e-16 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 83.17 E-value: 8.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 607 SLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELfqvk 686
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI---- 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 687 merEQHQTEIRDLQDQLSEMHDELDstkrsedrekgalieellqakqDLQDLLIAKEEQEDLLRKRERELTalkgalkee 766
Cdd:PRK02224 387 ---EELEEEIEELRERFGDAPVDLG----------------------NAEDFLEELREERDELREREAELE--------- 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 767 vsshdqemdklkeqydAELQALRESVEEAtknvEVLASRSNSSEQSQaeaDLREKVLKEENEKLQGRIAELERRAAQLQR 846
Cdd:PRK02224 433 ----------------ATLRTARERVEEA----EALLEAGKCPECGQ---PVEGSPHVETIEEDRERVEELEAELEDLEE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 847 QMEDVKGDEAQAKEtLRKCESEVQQLEE--ALVHARKEEKEATCARRALE-KELEQARRELSQVSQEQKELLEKLRDEAE 923
Cdd:PRK02224 490 EVEEVEERLERAED-LVEAEDRIERLEErrEDLEELIAERRETIEEKRERaEELRERAAELEAEAEEKREAAAEAEEEAE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 924 qkEQLRKLKnEMESERWHLDKTIEKLQKEMADIAEASrtsslELQKQLGEYKEKnRRELAEMQTQLKEKCLEV-EKARLA 1002
Cdd:PRK02224 569 --EAREEVA-ELNSKLAELKERIESLERIRTLLAAIA-----DAEDEIERLREK-REALAELNDERRERLAEKrERKREL 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1003 ASKMQD----ELRLKEEELQDYQRAEEEALT----KRQLLEQSLKDLEYELEAKSHLKDDRsrliKQMEDKVSQLEIELE 1074
Cdd:PRK02224 640 EAEFDEarieEAREDKERAEEYLEQVEEKLDelreERDDLQAEIGAVENELEELEELRERR----EALENRVEALEALYD 715
|
490 500 510
....*....|....*....|....*....|
gi 568961968 1075 E----ERTNADLLSERITWSREQMEQMRSE 1100
Cdd:PRK02224 716 EaeelESMYGDLRAELRQRNVETLERMLNE 745
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
614-1070 |
1.83e-15 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 81.89 E-value: 1.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 614 KLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEElfqvkmEREQHQ 693
Cdd:COG4913 278 RAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER------EIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 694 TEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLliakEEQEDLLRKRERELTALKGALKEEVSSHDQE 773
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEAL----EEELEALEEALAEAEAALRDLRRELRELEAE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 774 MDKLKEQ---YDAELQALRESVEEATKN-----------VEVLAsrSNSSEQSQAEADLR---------EKVLKE----- 825
Cdd:COG4913 428 IASLERRksnIPARLLALRDALAEALGLdeaelpfvgelIEVRP--EEERWRGAIERVLGgfaltllvpPEHYAAalrwv 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 826 ENEKLQGRI----AELERRAAQLQRQMED-------VKGDEAQA--------KETLRKCESeVQQLE--------EALVH 878
Cdd:COG4913 506 NRLHLRGRLvyerVRTGLPDPERPRLDPDslagkldFKPHPFRAwleaelgrRFDYVCVDS-PEELRrhpraitrAGQVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 879 ARKE--EK--------------EATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKN--EMESERW 940
Cdd:COG4913 585 GNGTrhEKddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEysWDEIDVA 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 941 HLDKTIEKLQKEMADIAEASRTSSlELQKQLGEYKEKnRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDY 1020
Cdd:COG4913 665 SAEREIAELEAELERLDASSDDLA-ALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568961968 1021 QRAEEEALTKRQLLEQSLKDLEYELEAksHLKDDRSRLIKQMEDKVSQLE 1070
Cdd:COG4913 743 ARLELRALLEERFAAALGDAVERELRE--NLEERIDALRARLNRAEEELE 790
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
618-1062 |
3.33e-15 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 80.58 E-value: 3.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKNQQNIKEERERMREDLEELR--VRHQSQVEETATLQRRLEESEGELRKSLEELfqvkMEREQHQTE 695
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAELPERLEELEERL----EELRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 696 IRDLQDQLSEMHDELDSTKRSEDREKgalIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKE-EVSSHDQEM 774
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQlENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 775 DKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADL----------REKVLKEENEKLQGRIAELERRAAQL 844
Cdd:COG4717 242 EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLlallflllarEKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 845 QRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCarraleKELEQARRELSQvsQEQKELLEKLRDEAEQ 924
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL------EELEQEIAALLA--EAGVEDEEELRAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 925 KEQLRKLKNEMESerwhLDKTIEKLQKEMADIAEASRTSSLELQ-KQLGEYKEKNRRELAEMQTQLKEkcLEVEKARLAA 1003
Cdd:COG4717 394 AEEYQELKEELEE----LEEQLEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELAE--LEAELEQLEE 467
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 1004 SKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDL--EYELEAKSHLKDDRSRLIKQM 1062
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEEWAALKLALELLEEAreEYREERLPPVLERASEYFSRL 528
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
609-1251 |
5.53e-15 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 80.60 E-value: 5.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 609 LDQKN-KLILEVSELQQQLQLEmknqQNIKEERERMREDLEElrvRHQSQVEETATLQRRLEESEgelrkslEELFQVKM 687
Cdd:pfam01576 31 LEKKHqQLCEEKNALQEQLQAE----TELCAEAEEMRARLAA---RKQELEEILHELESRLEEEE-------ERSQQLQN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDEldstkrsedREKGALIEELLQAK-QDLQDLLIAKEEQEDLLRKR----ERELTALKGA 762
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEEEAA---------RQKLQLEKVTTEAKiKKLEEDILLLEDQNSKLSKErkllEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 763 LKEEvSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAA 842
Cdd:pfam01576 168 LAEE-EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQ 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARrelsqvsqeqKELLEKLRDEA 922
Cdd:pfam01576 247 AALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALK----------TELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 923 EQKEqlrkLKNEMESERWHLDKTIEklqkemadiaEASRTSslelQKQLGEYKEKNRRELAEMQTQL---KEKCLEVEKA 999
Cdd:pfam01576 317 AQQE----LRSKREQEVTELKKALE----------EETRSH----EAQLQEMRQKHTQALEELTEQLeqaKRNKANLEKA 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1000 RLAASKMQDELrlkEEELQDYQRAEEEALTKRQLLEQSLKDLEYELeakshlkDDRSRLIKQMEDKVSQLEIELEEERTN 1079
Cdd:pfam01576 379 KQALESENAEL---QAELRTLQQAKQDSEHKRKKLEGQLQELQARL-------SESERQRAELAEKLSKLQSELESVSSL 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 ADLLSERITWSREQMEQMRSELlqekaakQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARiaeledrlE 1159
Cdd:pfam01576 449 LNEAEGKNIKLSKDVSSLESQL-------QDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAK--------R 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1160 NEERDRANLQLSNRRLERKVKELVMQVDdehlSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVN 1239
Cdd:pfam01576 514 NVERQLSTLQAQLSDMKKKLEEDAGTLE----ALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDL 589
|
650
....*....|..
gi 568961968 1240 EQLQGQLNSLKK 1251
Cdd:pfam01576 590 DHQRQLVSNLEK 601
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
695-1251 |
8.20e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 8.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 695 EIRDLQDQLSEMHDELDSTKRsEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEM 774
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEK-QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 775 DKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSqaeadlreKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGD 854
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQN--------NQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 855 EAQAKETLRKCESEVQQLEEALVHarkeekeatcarraLEKELEQARRELSQVSQEQ-----KELLEKLRDEAEQKEQLR 929
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKIKE--------------LEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 930 KLKNEMESERWHLDKTIEKLQKEMADiaeaSRTSSLELQKQLGEY----------KEKNRRELAEMQTQLKEKCLEVEKA 999
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTN----SESENSEKQRELEEKqneieklkkeNQSYKQEIKNLESQINDLESKIQNQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1000 RLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTN 1079
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 ADllseritWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEgSYRSSKEGLVVQMEARIAELEDRLE 1159
Cdd:TIGR04523 484 LE-------QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLE-SEKKEKESKISDLEDELNKDDFELK 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1160 NEerdranlqlsnrrlerkvkelvmQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVN 1239
Cdd:TIGR04523 556 KE-----------------------NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
570
....*....|..
gi 568961968 1240 EQLQGQLNSLKK 1251
Cdd:TIGR04523 613 SSLEKELEKAKK 624
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
619-1141 |
1.06e-14 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 79.04 E-value: 1.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEgelrkslEELFQVKMEREQHQTEIRD 698
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-------EELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 699 LQDQLS-EMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKL 777
Cdd:COG4717 121 LEKLLQlLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 778 KEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENE-KLQGRIAELERRAAQLQRQMEDVKGdEA 856
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlLIAAALLALLGLGGSLLSLILTIAG-VL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 857 QAKETLRKCESEVQQLEEALVHARKEEKEATCARRALE-KELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEM 935
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 936 ESERwhldkTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKnRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLkEE 1015
Cdd:COG4717 360 EEEL-----QLEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEEL-EE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1016 ELQDYQRAEEEALTKRQLLEQSLKDLEYELEaksHLKDDR--SRLIKQMEDKVSQLEiELEEERTNADLLSERITWSREQ 1093
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELE---QLEEDGelAELLQELEELKAELR-ELAEEWAALKLALELLEEAREE 508
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 568961968 1094 MEQMRSELLQEKAAK--QDLECDKISLERQNKDLKSRIIHLEGSYRSSKE 1141
Cdd:COG4717 509 YREERLPPVLERASEyfSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVEE 558
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
894-1231 |
1.15e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 1.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 894 EKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGE 973
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 974 YkeknRRELAEMQTQLKEKCLEVEKARLAASKMQDELR-LKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELE-AKSHL 1051
Cdd:TIGR02169 249 L----EEELEKLTEEISELEKRLEEIEQLLEELNKKIKdLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEdAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1052 KDDRSRLIKQMEDkVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIH 1131
Cdd:TIGR02169 325 AKLEAEIDKLLAE-IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1132 LEGSYRSSKEGL------VVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHlsltDQKDQLSLRLK 1205
Cdd:TIGR02169 404 LKRELDRLQEELqrlseeLADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE----QELYDLKEEYD 479
|
330 340
....*....|....*....|....*.
gi 568961968 1206 AMKRQVEEAEEEIDRLESSKKKLQRE 1231
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEER 505
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
634-1251 |
2.28e-14 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 78.55 E-value: 2.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 634 QNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELfQVKMEREQHQTEIRDLQDQLSEMHDELDST 713
Cdd:TIGR00606 304 NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRL-QLQADRHQEHIRARDSLIQSLATRLELDGF 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 714 KRSEDREKG-----ALIEELLQAK--------QDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQE------- 773
Cdd:TIGR00606 383 ERGPFSERQiknfhTLVIERQEDEaktaaqlcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEElkfvike 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 774 -------MDKLKEQYDAELQALRE-SVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQgriaelerRAAQLQ 845
Cdd:TIGR00606 463 lqqlegsSDRILELDQELRKAERElSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN--------HHTTTR 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 RQMEDVKGDEAQAKETLRKCESE--------------VQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQ 911
Cdd:TIGR00606 535 TQMEMLTKDKMDKDEQIRKIKSRhsdeltsllgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 912 KELLEKLRDEAEQKEQLRKLKNEmESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKE---------KNRREL 982
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDVCGSQDE-ESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfQTEAEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 983 AEMQTQLKEKCLEVEkarlaaskmqDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYEL----EAKSHLKDDRSRL 1058
Cdd:TIGR00606 694 QEFISDLQSKLRLAP----------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIpelrNKLQKVNRDIQRL 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1059 IKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQ------DLECDKISLERQNKDLKSRIIHL 1132
Cdd:TIGR00606 764 KNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKlqgsdlDRTVQQVNQEKQEKQHELDTVVS 843
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGSyrsSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRR---LERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKR 1209
Cdd:TIGR00606 844 KIE---LNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRrqqFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568961968 1210 QVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKK 1251
Cdd:TIGR00606 921 DQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
611-1088 |
3.31e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 78.26 E-value: 3.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILEVSELQQQLQlEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMERE 690
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 691 QHQTEIRDLQDQLSEMHDELDSTKRSEDREKGAliEELLQAKQDLQDLLIAKEEQE-----DLLRKRERELTALKGALKE 765
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA--DELKKAAAAKKKADEAKKKAEekkkaDEAKKKAEEAKKADEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 766 EVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVlasrSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQ 845
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA----KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 RQMEDVKGDEAQAKETLRKCES-----EVQQLEEA--LVHARKEEKEATCARRALE--KELEQARRE--LSQVSQEQKEL 914
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADElkkaeELKKAEEKkkAEEAKKAEEDKNMALRKAEeaKKAEEARIEevMKLYEEEKKMK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 915 LEKLRDEAEQK---EQLRKLKNEMESERWHLDKTIEKLQK----------------EMADIAEASRTSSLELQKQLGEYK 975
Cdd:PTZ00121 1609 AEEAKKAEEAKikaEELKKAEEEKKKVEQLKKKEAEEKKKaeelkkaeeenkikaaEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 976 E-----KNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQdyQRAEEEaltkRQLLEQSLKDLEYELEAKSH 1050
Cdd:PTZ00121 1689 KaaealKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK--KEAEED----KKKAEEAKKDEEEKKKIAHL 1762
|
490 500 510
....*....|....*....|....*....|....*...
gi 568961968 1051 LKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERIT 1088
Cdd:PTZ00121 1763 KKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
604-1254 |
3.91e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 77.85 E-value: 3.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQLemknQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELF 683
Cdd:pfam15921 136 ESQSQEDLRNQLQNTVHELEAAKCL----KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMS 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QV----------KMEREQhQTEIRDLQDQLSEMHDELDSTKrSEDREKgalIEELLQAKQDLQDLLIAKEE--------- 744
Cdd:pfam15921 212 TMhfrslgsaisKILREL-DTEISYLKGRIFPVEDQLEALK-SESQNK---IELLLQQHQDRIEQLISEHEveitgltek 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 745 -------------QEDLLRKRERELTALK----GALKEEVSSHDQEMDKLKEQYDAELQALRESVEEAtkNVEVLASRSN 807
Cdd:pfam15921 287 assarsqansiqsQLEIIQEQARNQNSMYmrqlSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA--NSELTEARTE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 808 SSEQSQAEADLrekvlkeeNEKLQGRIAELERRAAQLQRQMEDVK-------GDEAQAKETLRKCES---EVQQLEeALV 877
Cdd:pfam15921 365 RDQFSQESGNL--------DDQLQKLLADLHKREKELSLEKEQNKrlwdrdtGNSITIDHLRRELDDrnmEVQRLE-ALL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 878 HARKEEKEAtcarralekeleQARRELSQVsQEQKELLEKLRDEAEQ----KEQLRKLKNEMESERWHLD---KTIEKLQ 950
Cdd:pfam15921 436 KAMKSECQG------------QMERQMAAI-QGKNESLEKVSSLTAQlestKEMLRKVVEELTAKKMTLEsseRTVSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 951 KEMADIAEASRTSSLELQKqLGEYKEKNRRELAEMQTQ---LKEKCLEVEKARLAASKMQDELRLKEEELQD-------Y 1020
Cdd:pfam15921 503 ASLQEKERAIEATNAEITK-LRSRVDLKLQELQHLKNEgdhLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqH 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1021 QRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIElEEERTNADllSERITWSREqMEQMRSE 1100
Cdd:pfam15921 582 GRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELE-KVKLVNAG--SERLRAVKD-IKQERDQ 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1101 LLQE-KAAKQDLEcdkiSLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELedrleneERDRANLQlSNRRLERKV 1179
Cdd:pfam15921 658 LLNEvKTSRNELN----SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL-------EQTRNTLK-SMEGSDGHA 725
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1180 KELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLR 1254
Cdd:pfam15921 726 MKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
775-1246 |
8.25e-14 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 76.49 E-value: 8.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 775 DKLKEQYDaELQALRESVEEATKNVEVLAsRSNSSEQSQAEADLREKVLKEENEKL-----QGRIAELERRAAQLQRQME 849
Cdd:COG4913 228 DALVEHFD-DLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 850 DVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEAtcarraLEKELEQARRELSQVSQEQKELleklrdeaeqKEQLR 929
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRRARL----------EALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 930 KLKNEMESERwhldKTIEKLQKEMADIAEASRtsslELQKQLGEYKEKNRRELAEMQTQLKEkcLEVEKARLAASK---- 1005
Cdd:COG4913 370 ALGLPLPASA----EEFAALRAEAAALLEALE----EELEALEEALAEAEAALRDLRRELRE--LEAEIASLERRKsnip 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1006 ---------MQDELRLKEEEL-------------QDYQRAEEEAL-TKRQLLeqsLKDLEYELEAKSHL--KDDRSRLIK 1060
Cdd:COG4913 440 arllalrdaLAEALGLDEAELpfvgelievrpeeERWRGAIERVLgGFALTL---LVPPEHYAAALRWVnrLHLRGRLVY 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1061 QmedKVSQLEIELEEERTNADLLSERITWSREQMEQ-MRSELLQEKAAK-----QDLECDK--ISLERQNKDLKSRIIHL 1132
Cdd:COG4913 517 E---RVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVcvdspEELRRHPraITRAGQVKGNGTRHEKD 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKEL-------------------VMQVDDEHLSL 1193
Cdd:COG4913 594 DRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALqerrealqrlaeyswdeidVASAEREIAEL 673
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 1194 TDQKDQL---SLRLKAMKRQVEEAEEEIDRLESSKKKLQRE---LEEQMGVNEQLQGQL 1246
Cdd:COG4913 674 EAELERLdasSDDLAALEEQLEELEAELEELEEELDELKGEigrLEKELEQAEEELDEL 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
735-1234 |
8.66e-14 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 75.96 E-value: 8.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 735 LQDLLIAK--EEQEDLLRKRERELTALKGALKEEvsshDQEMDKLKEQYDaELQALRESVEEATKNVEVLASRSNSSEQS 812
Cdd:COG4717 43 IRAMLLERleKEADELFKPQGRKPELNLKELKEL----EEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 813 QAEADLREKVLK--EENEKLQGRIAELERRAAQLQRQMEDVKgdeaQAKETLRKCESEVQQLEEALVHARKEEKEATcar 890
Cdd:COG4717 118 LEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLAT--- 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 891 ralEKELEQARRELSQVSQEQKEL---LEKLRDEAEQ-KEQLRKLKNEMESErwhldKTIEKLQKEMADIAEASRTSSLE 966
Cdd:COG4717 191 ---EEELQDLAEELEELQQRLAELeeeLEEAQEELEElEEELEQLENELEAA-----ALEERLKEARLLLLIAAALLALL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 967 LQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLeyELE 1046
Cdd:COG4717 263 GLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE--ELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 AKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNAdLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLK 1126
Cdd:COG4717 341 ELLDRIEELQELLREAEELEEELQLEELEQEIAA-LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELE 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1127 SRIIHLEGSyrsskeglvvQMEARIAELEDRLENEERDRANLQLSNRRLERKVkelvmqvddEHLSLTDQKDQLSLRLKA 1206
Cdd:COG4717 420 ELLEALDEE----------ELEEELEELEEELEELEEELEELREELAELEAEL---------EQLEEDGELAELLQELEE 480
|
490 500
....*....|....*....|....*...
gi 568961968 1207 MKRQVEEAEEEIDRLESSKKKLQRELEE 1234
Cdd:COG4717 481 LKAELRELAEEWAALKLALELLEEAREE 508
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
717-1251 |
3.69e-13 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 74.62 E-value: 3.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 717 EDREKGALIEELLQAKQDLQDLLIAKEEQEdllRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEAT 796
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELK---LQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 797 KNVEVLASRSNSS-----------EQSQAEADLREKVLKEENEK---LQGRIAELERRAAQLQRQMEDVKGDEAQAKETL 862
Cdd:pfam02463 244 ELLRDEQEEIESSkqeiekeeeklAQVLKENKEEEKEKKLQEEElklLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 863 RKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHL 942
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 943 DKTIE---KLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQD 1019
Cdd:pfam02463 404 EKEAQlllELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1020 YQRAEEEALTKRQLLEQSLKDLEYELEAK-SHLKDDRSRLIKQMEDKVSQLEIELE-----------EERTNADLLSERI 1087
Cdd:pfam02463 484 EQLELLLSRQKLEERSQKESKARSGLKVLlALIKDGVGGRIISAHGRLGDLGVAVEnykvaistaviVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1088 TWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEAR-IAELEDRLENEERDRA 1166
Cdd:pfam02463 564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEgILKDTELTKLKESAKA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1167 NLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQL 1246
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL 723
|
....*
gi 568961968 1247 NSLKK 1251
Cdd:pfam02463 724 ADRVQ 728
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
622-1110 |
3.74e-13 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 74.37 E-value: 3.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 622 LQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEE----TATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIR 697
Cdd:pfam05483 315 LEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEfeatTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 698 DLQDQLSEMHDELDSTKRSEDrEKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKL 777
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILA-EDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEV 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 778 KE-QYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKV-----LKEENEKLQGRIAELERRAAQLQRQMEDV 851
Cdd:pfam05483 474 EDlKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQediinCKKQEERMLKQIENLEEKEMNLRDELESV 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 852 ------KGDEAQAKetLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQ- 924
Cdd:pfam05483 554 reefiqKGDEVKCK--LDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQl 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 925 ---KEQLRKLKNEMESERWHLDKTIEKLQKEMAD--IAEASRTSSLELQKQLGEYKEKNRREL-AEMQTQLKEKCLEVEK 998
Cdd:pfam05483 632 nayEIKVNKLELELASAKQKFEEIIDNYQKEIEDkkISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALMEK 711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 999 ARLAASKMQDElrlKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKShlkddrsrlikqmedkvSQLEIEleeert 1078
Cdd:pfam05483 712 HKHQYDKIIEE---RDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK-----------------KQLEIE------ 765
|
490 500 510
....*....|....*....|....*....|..
gi 568961968 1079 nadllseritwsREQMEQMRSELLQEKAAKQD 1110
Cdd:pfam05483 766 ------------KEEKEKLKMEAKENTAILKD 785
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
619-934 |
4.45e-13 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 74.00 E-value: 4.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQNIKEERERM------REDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQH 692
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKareverRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 693 QTEIRDLQDQLSEMHdELDSTKRSEDREKGALIEELLQAKQdlqdlliAKEEQEDLLRKRERELTALKGALKEEVSSHDQ 772
Cdd:pfam17380 364 RIRQEEIAMEISRMR-ELERLQMERQQKNERVRQELEAARK-------VKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 773 EMDKLKEQYDAELQALRESVEEATKNVEVLasrsnsseqSQAEADLREKVLKEENEKLQGRIAELERRAAqLQRQMEDVK 852
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERL---------RQQEEERKRKKLELEKEKRDRKRAEEQRRKI-LEKELEERK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 853 GDEAQAKETLRKCESEVQQLEEALvhARKEEKEATCARRALEKELEQARRELSQV--SQEQKELLEKLRDEAEQKEQLRK 930
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAI--YEEERRREAEEERRKQQEMEERRRIQEQMrkATEERSRLEAMEREREMMRQIVE 583
|
....
gi 568961968 931 LKNE 934
Cdd:pfam17380 584 SEKA 587
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
819-1251 |
4.77e-13 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 73.94 E-value: 4.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 819 REKVLK-----EENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRAL 893
Cdd:PRK03918 147 REKVVRqilglDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 894 EKE----------LEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLD------KTIEKLQKEMADIA 957
Cdd:PRK03918 227 EKEvkeleelkeeIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelkekaEEYIKLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 958 EASRtsslELQKQLGEYkeknRRELAEMQTQLKEkcLEVEKARLAA-SKMQDELRLKEEELQDYQRAEEEALTKRQLLEQ 1036
Cdd:PRK03918 307 DELR----EIEKRLSRL----EEEINGIEERIKE--LEEKEERLEElKKKLKELEKRLEELEERHELYEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1037 --------SLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSER----ITWSREQMEQMRSELLQE 1104
Cdd:PRK03918 377 lkkrltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcPVCGRELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1105 KAAK-QDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVV-QMEARIAELEDRLenEERDRANLQLSNRRLErKVKEL 1182
Cdd:PRK03918 457 YTAElKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkELAEQLKELEEKL--KKYNLEELEKKAEEYE-KLKEK 533
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1183 VMQVDDEHLSLtdqKDQLSlRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ-MGVNEQLQGQLNSLKK 1251
Cdd:PRK03918 534 LIKLKGEIKSL---KKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELEP 599
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
610-1112 |
5.43e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 5.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMER 689
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQT----------EIRDLQDQLSEMHDE---LDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKREREL 756
Cdd:TIGR04523 197 LKLELllsnlkkkiqKNKSLESQISELKKQnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 757 TALKGALKE---EVSSHDQEMDKLKEQYDAEL-QALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQG 832
Cdd:TIGR04523 277 EQNNKKIKElekQLNQLKSEISDLNNQKEQDWnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 833 RIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEatcarraLEKELEQARRELSQVSQEQK 912
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ-------KDEQIKKLQQEKELLEKEIE 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 913 ELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRR--ELAEMQTQLK 990
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKElkKLNEEKKELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 991 EKC-----------LEVEKARLAASKMQDELRLKEEELQ------DYQRAEEEALTKRQLLEQsLKDLEYELEAKSHLKD 1053
Cdd:TIGR04523 510 EKVkdltkkisslkEKIEKLESEKKEKESKISDLEDELNkddfelKKENLEKEIDEKNKEIEE-LKQTQKSLKKKQEEKQ 588
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 1054 DrsrLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLE 1112
Cdd:TIGR04523 589 E---LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
579-952 |
5.85e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 579 EKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEvseLQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQV 658
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 659 EETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGAL------IEELLQAK 732
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLeslerrIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 733 QDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQydaeLQALRESVEEATKNVEVLASRSNSSEQS 812
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA----LALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 813 QAEADLREKVLKEENEKLQGRIAEL-ERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALvharkeekeatcarr 891
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLqERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI--------------- 981
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961968 892 aleKEL----EQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESE-RWHLDKTIEKLQKE 952
Cdd:TIGR02168 982 ---KELgpvnLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREaRERFKDTFDQVNEN 1044
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
659-1234 |
6.67e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 6.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 659 EETATLQRRLEESEGELrKSLEELFQVKMEREQH-QTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQD 737
Cdd:TIGR04523 40 KKLKTIKNELKNKEKEL-KNLDKNLNKDEEKINNsNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 738 LLIAKEEQEDL---LRKRERELTALKGALK------EEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNS 808
Cdd:TIGR04523 119 KNKLEVELNKLekqKKENKKNIDKFLTEIKkkekelEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 809 SEQSQaeadLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATc 888
Cdd:TIGR04523 199 LELLL----SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ- 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 889 arraleKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ--LRKLKNEMESErwhlDKTIEKLQKEMADIaeasrtssle 966
Cdd:TIGR04523 274 ------KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQ----EKKLEEIQNQISQN---------- 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 967 lqkqlgeykEKNRRELAEMQTQLKEkclEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYEle 1046
Cdd:TIGR04523 334 ---------NKIISQLNEQISQLKK---ELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-- 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 akshlkddrsrlIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELlqekaakQDLECDKISLERQNKDLK 1126
Cdd:TIGR04523 400 ------------IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI-------KDLTNQDSVKELIIKNLD 460
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1127 SRIIHLEgsyrsskeglvvqmeARIAELEDRLENEERDranlqlsnrrLERKVKELVMQVDdEHLSLTDQKDQLSLRLKA 1206
Cdd:TIGR04523 461 NTRESLE---------------TQLKVLSRSINKIKQN----------LEQKQKELKSKEK-ELKKLNEEKKELEEKVKD 514
|
570 580
....*....|....*....|....*...
gi 568961968 1207 MKRQVEEAEEEIDRLESSKKKLQRELEE 1234
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESEKKEKESKISD 542
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
672-1233 |
1.77e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 72.13 E-value: 1.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 672 EGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDeldstkrsedrEKGALIEELlqakQDLQDLLIAKEEQEDLLRK 751
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE-----------EKNALQEQL----QAETELCAEAEEMRARLAA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 752 RERELTALKGALK---EEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENE 828
Cdd:pfam01576 69 RKQELEEILHELEsrlEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 829 KLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVS 908
Cdd:pfam01576 149 KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQ 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 909 QEQKELLEKLrdeAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRtsSLELQKQLGEYKEKNRRELAEMQTQ 988
Cdd:pfam01576 229 AQIAELRAQL---AKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQE--DLESERAARNKAEKQRRDLGEELEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 989 LKEKCLEVekarLAASKMQDELRLK-EEELQDYQRAEEEALTK--------RQLLEQSLKDLEYELE-----------AK 1048
Cdd:pfam01576 304 LKTELEDT----LDTTAAQQELRSKrEQEVTELKKALEEETRSheaqlqemRQKHTQALEELTEQLEqakrnkanlekAK 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1049 SHLKDDRSRLIKQMEdKVSQLEIELEEERTNADLLSERITWSREQMEQMRSElLQEKAAKQDLECDKISLERQNKDLKsr 1128
Cdd:pfam01576 380 QALESENAELQAELR-TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAE-LAEKLSKLQSELESVSSLLNEAEGK-- 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1129 iihlegSYRSSKEglVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLS---LTDQKDQLSLRLK 1205
Cdd:pfam01576 456 ------NIKLSKD--VSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAkrnVERQLSTLQAQLS 527
|
570 580
....*....|....*....|....*...
gi 568961968 1206 AMKRQVEEAEEEIDRLESSKKKLQRELE 1233
Cdd:pfam01576 528 DMKKKLEEDAGTLEALEEGKKRLQRELE 555
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
779-1043 |
7.96e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.94 E-value: 7.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 779 EQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEEN--EKLQGRIAELERRAAQLQRQMEDVkgdeA 856
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDDL----A 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 857 QAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQV----SQEQKELLEKLRDEAEQKEQLRKLK 932
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAedlaRLELRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 933 NEMESERWHLDKTIEKLQKE----MADIAEASRTSSLELQKQLGEYkeknrRELAEMQTQLKEKCLEVEKARLAASKMQD 1008
Cdd:COG4913 769 ENLEERIDALRARLNRAEEEleraMRAFNREWPAETADLDADLESL-----PEYLALLDRLEEDGLPEYEERFKELLNEN 843
|
250 260 270
....*....|....*....|....*....|....*
gi 568961968 1009 ELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEY 1043
Cdd:COG4913 844 SIEFVADLLSKLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
621-1030 |
1.11e-11 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 68.77 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 621 ELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEEtatLQRRLEESEGELRKSLEELfqvkMEREQHQTEIRDLQ 700
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRE---LESRVAELKEELRQSREKH----EELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 701 DQLSEMHDELdstkRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEvsshdqemdklKEQ 780
Cdd:pfam07888 111 EELSEEKDAL----LAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAE-----------RKQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 781 YDAELQALRESVEEATKNVEVLASrsnsseqSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGdeaqAKE 860
Cdd:pfam07888 176 LQAKLQQTEEELRSLSKEFQELRN-------SLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRS----LQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 861 TLRKCESEVQQLEEALvharkeeKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRK-LKNEMESER 939
Cdd:pfam07888 245 RLNASERKVEGLGEEL-------SSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQEREtLQQSAEADK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 940 WHLDKTIEKLQKEMADIAEAsRTSSLELQKQLGEYKEKNRRELAEMQTQLKekclEVEKARLAASKMQDELRLKEEELQD 1019
Cdd:pfam07888 318 DRIEKLSAELQRLEERLQEE-RMEREKLEVELGREKDCNRVQLSESRRELQ----ELKASLRVAQKEKEQLQAEKQELLE 392
|
410
....*....|.
gi 568961968 1020 YQRAEEEALTK 1030
Cdd:pfam07888 393 YIRQLEQRLET 403
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1078 |
2.66e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 2.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 606 NSLLDQKNKLILEVSELQQQLQ--------LEMKNQQ--NIKEERERMREDLEELRVRHQsQVEETATLQRRLEESEGEL 675
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINgieerikeLEEKEERleELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 676 R-KSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDstKRSEDREKGalIEELLQAKQD--LQDLLIAKEEQEDLLRKR 752
Cdd:PRK03918 382 TgLTPEKLEKELEELEKAKEEIEEEISKITARIGELK--KEIKELKKA--IEELKKAKGKcpVCGRELTEEHRKELLEEY 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 753 ERELTALKGALKEEVSSHDQEMDKLKE-----QYDAELQALRESVEEaTKNVEVLASRSNSSEQSQAEADLREkvLKEEN 827
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRElekvlKKESELIKLKELAEQ-LKELEEKLKKYNLEELEKKAEEYEK--LKEKL 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 828 EKLQGRIAELERRAAQLQrqmedvkgdeaQAKETLRKCESEVQQLEEAL--VHARKEEKEATCarralEKELEQARRELS 905
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLE-----------ELKKKLAELEKKLDELEEELaeLLKELEELGFES-----VEELEERLKELE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 906 QVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEM 985
Cdd:PRK03918 599 PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 986 QTQLKekclEVEKARLAASKMQDELrlkEEELQDYQRAEEEAltkrQLLEQSLKDLEyelEAKSHLKDDRSRLIKQMEDK 1065
Cdd:PRK03918 679 RAELE----ELEKRREEIKKTLEKL---KEELEEREKAKKEL----EKLEKALERVE---ELREKVKKYKALLKERALSK 744
|
490
....*....|...
gi 568961968 1066 VSQLEIELEEERT 1078
Cdd:PRK03918 745 VGEIASEIFEELT 757
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
842-1187 |
4.49e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 4.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 842 AQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATcARRALEKELEQArrelsqvsqEQKELLEKLRDE 921
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREY---------EGYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQL-------KEKCL 994
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIaslersiAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 995 EVEKARLAASKMQDELRLKEEELQDYQRA-EEEALTKRQL------LEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVS 1067
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREiEEERKRRDKLteeyaeLKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1068 QLEIELEEERTNADLLSERitwsreqMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGL---- 1143
Cdd:TIGR02169 396 KLKREINELKRELDRLQEE-------LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLskye 468
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 568961968 1144 --VVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVD 1187
Cdd:TIGR02169 469 qeLYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
610-859 |
6.28e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.94 E-value: 6.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRvrhqsqvEETATLQRRLEESEGELRKSLEELFQVKMER 689
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-------RRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQTEIRDLQDQLSEMhdeLDSTKRSEDREKGALI------EELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGAL 763
Cdd:COG4942 93 AELRAELEAQKEELAEL---LRALYRLGRQPPLALLlspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KEEVsshdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEadlrekvLKEENEKLQGRIAELERRAAQ 843
Cdd:COG4942 170 EAER----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE-------LQQEAEELEALIARLEAEAAA 238
|
250
....*....|....*.
gi 568961968 844 LQRQMEDVKGDEAQAK 859
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
659-1100 |
1.07e-10 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 66.52 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 659 EETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQdl 738
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQ-- 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 739 liakeEQEDLLRKRERELTALKgalkeevsSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASR-----SNSSEQSQ 813
Cdd:PRK04863 915 -----QHGNALAQLEPIVSVLQ--------SDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRahfsyEDAAEMLA 981
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 814 AEADLrekvlkeeNEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCarRAL 893
Cdd:PRK04863 982 KNSDL--------NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV--PAD 1051
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 894 EKELEQARRElsqvsqeQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADI------AEASRTSSLEL 967
Cdd:PRK04863 1052 SGAEERARAR-------RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMreqvvnAKAGWCAVLRL 1124
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 968 QKQLGEYKEKNRRELAEMqtqlkekclEVEKARLAASKMQDELRL---KEEELQDYQRAEEEALTKRQLLEqslkdleYE 1044
Cdd:PRK04863 1125 VKDNGVERRLHRRELAYL---------SADELRSMSDKALGALRLavaDNEHLRDVLRLSEDPKRPERKVQ-------FY 1188
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961968 1045 LEAKSHLK----------DDRSRLIKQMEDKVSQLEIELEeertnadllseritwSREQMEQMRSE 1100
Cdd:PRK04863 1189 IAVYQHLRerirqdiirtDDPVEAIEQMEIELSRLTEELT---------------SREQKLAISSE 1239
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
776-1005 |
1.23e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.79 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 776 KLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDE 855
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 AQAKETLRKCESEVQQLEEA---LVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAE-QKEQLRKL 931
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEaERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961968 932 KNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQkQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASK 1005
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELA-ELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
720-1103 |
1.28e-10 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 66.13 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 720 EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK------------EQYDAELQA 787
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalrqqekiERYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 788 LRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQrqmedvkgdeaQAKETLRKCES 867
Cdd:PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQ-----------QAVQALERAKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 868 -------EVQQLEEALVHARKEEKEATCARRALEKEL----------EQA------------RRELSQVSQEQKELLEKL 918
Cdd:PRK04863 429 lcglpdlTADNAEDWLEEFQAKEQEATEELLSLEQKLsvaqaahsqfEQAyqlvrkiagevsRSEAWDVARELLRRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 919 RDEAEQKEQLRKLKNEMEsERWHLDKTIEKLQKEMADIAEASRTSSLELQkqlgeykeknrRELAEMQTQLKEkcLEVEK 998
Cdd:PRK04863 509 RHLAEQLQQLRMRLSELE-QRLRQQQRAERLLAEFCKRLGKNLDDEDELE-----------QLQEELEARLES--LSESV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 999 ARLAASKMqdELRLKEEEL-QDYQR---------AEEEALTkrQLLEQSLKDLEyeleakshlkdDRSRLIKQMEDKVSQ 1068
Cdd:PRK04863 575 SEARERRM--ALRQQLEQLqARIQRlaarapawlAAQDALA--RLREQSGEEFE-----------DSQDVTEYMQQLLER 639
|
410 420 430
....*....|....*....|....*....|....*
gi 568961968 1069 lEIELEEERtnaDLLSERitwsREQMEQMRSELLQ 1103
Cdd:PRK04863 640 -ERELTVER---DELAAR----KQALDEEIERLSQ 666
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
663-1164 |
1.70e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 65.84 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 663 TLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREK--GALIEELLQAKQDLQDLLI 740
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESdlERLKEEIEKSSKQRAMLAG 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 741 AKEEQEDLLRKRERELTALkGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNS----SEQSQAEA 816
Cdd:TIGR00606 661 ATAVYSQFITQLTDENQSC-CPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEmlglAPGRQSII 739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 817 DLREKVLKEENEKLQGRIAELERRAAQLQRQmEDVKGDEAQAKETLRKCESEVQQLEEalVHARKEEKEATCARRALEKE 896
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ-ETLLGTIMPEEESAKVCLTDVTIMER--FQMELKDVERKIAQQAAKLQ 816
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 897 LEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEAsrtssLELQKQLGEYKE 976
Cdd:TIGR00606 817 GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN-----LQRRQQFEEQLV 891
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 977 KNRRELAEMQTQLKEKCLEVEKARLAASKMQDElrlKEEELQDYQRAEEEALTKRQLLEQSLKDLE-YELEAKSHLKDDR 1055
Cdd:TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQE---KEELISSKETSNKKAQDKVNDIKEKVKNIHgYMKDIENKIQDGK 968
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1056 SRLIKQMEDKVSQLEIELEEERTNadllSERItwsREQMEQMRSELLQEKAAKQDLEcDKISLERQNKDLKSRIIHLEGS 1135
Cdd:TIGR00606 969 DDYLKQKETELNTVNAQLEECEKH----QEKI---NEDMRLMRQDIDTQKIQERWLQ-DNLTLRKRENELKEVEEELKQH 1040
|
490 500
....*....|....*....|....*....
gi 568961968 1136 YRSSKEGLVVQMEARIAELEDRLENEERD 1164
Cdd:TIGR00606 1041 LKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
688-969 |
2.10e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.01 E-value: 2.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDELDSTKRSEDrekgalieellQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEev 767
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEK-----------ALLKQLAALERRIAALARRIRALEQELAALEAELAE-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 ssHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQ 847
Cdd:COG4942 88 --LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 848 MEDVkgdeaqaketlrkcESEVQQLEealvharkeekeatcarrALEKELEQARRELSQVSQEQKELLEKL-RDEAEQKE 926
Cdd:COG4942 166 RAEL--------------EAERAELE------------------ALLAELEEERAALEALKAERQKLLARLeKELAELAA 213
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568961968 927 QLRKLKNEMESerwhLDKTIEKLQKEMADIAEASRTSSLELQK 969
Cdd:COG4942 214 ELAELQQEAEE----LEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
832-1262 |
2.42e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 832 GRIAELERRAAQLQRQMEDVKGDeaqAKETLRKCESEVQQLEEALVHAR-----KEEKEATCARRALEKELEQARR---E 903
Cdd:PRK02224 162 GKLEEYRERASDARLGVERVLSD---QRGSLDQLKAQIEEKEEKDLHERlngleSELAELDEEIERYEEQREQAREtrdE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 904 LSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAE-------------ASRTSSLELQKQ 970
Cdd:PRK02224 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEerddllaeaglddADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 971 LGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQ---DELRLKEEELQDYQRAEEEALTKRqllEQSLKDLEYELE- 1046
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeraEELREEAAELESELEEAREAVEDR---REEIEELEEEIEe 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 --------------AKSHLKDDRSRLiKQMEDKVSQLEIELEEERT----NADLLSE-----------------RITWSR 1091
Cdd:PRK02224 396 lrerfgdapvdlgnAEDFLEELREER-DELREREAELEATLRTARErveeAEALLEAgkcpecgqpvegsphveTIEEDR 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1092 EQMEQMRSELLQEKAAKQDLEcDKISLERQNKDLKSRIIHLEGSyRSSKEGLVVQMEARIAELEDRLEnEERDRANLQLS 1171
Cdd:PRK02224 475 ERVEELEAELEDLEEEVEEVE-ERLERAEDLVEAEDRIERLEER-REDLEELIAERRETIEEKRERAE-ELRERAAELEA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1172 NRRLERKVKELVMQVDDEHL----SLTDQKDQLSLRLKAMKRqVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLN 1247
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAReevaELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630
|
490
....*....|....*
gi 568961968 1248 SLKKglRLKTLSSKV 1262
Cdd:PRK02224 631 EKRE--RKRELEAEF 643
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
539-991 |
2.70e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 539 QQELTQQTNEETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQTLKSRaagsaqgSNQAPNSPSEGNSLLDQKNKLILE 618
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE-------QNKIKKQLSEKQKELEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQNIKEErermrEDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRD 698
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQ-----DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 699 LQDQLSEMHDELDSTKRsEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGA-------LKEEVSSHD 771
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKK-ENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELlekeierLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 772 QEMDKLKEQ---YDAELQALRESVEEATKNVEVLASRSNSSEQSQaeadlrEKVLKEENEKLQgRIAELERRAAQLQRQM 848
Cdd:TIGR04523 440 SEIKDLTNQdsvKELIIKNLDNTRESLETQLKVLSRSINKIKQNL------EQKQKELKSKEK-ELKKLNEEKKELEEKV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 849 EDVKGDEAQAKETLRKCESEVQQLEEALVHARKE--EKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKE 926
Cdd:TIGR04523 513 KDLTKKISSLKEKIEKLESEKKEKESKISDLEDElnKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 927 QLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELqKQLGEYKEKNRRELAEMQTQLKE 991
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII-KNIKSKKNKLKQEVKQIKETIKE 656
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
608-1186 |
2.79e-10 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 65.36 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 608 LLDQKNKLILEVSELQQQLqlemknqqnikEERERMREDLEELRVRHQSQV-------EETATLQRRLEESEGELRKSLE 680
Cdd:COG3096 510 LAQRLQQLRAQLAELEQRL-----------RQQQNAERLLEEFCQRIGQQLdaaeeleELLAELEAQLEELEEQAAEAVE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 681 ELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRsedrekgaLIEELLQAKQDLQDLLIAKEEQEDLLRKRERE---LT 757
Cdd:COG3096 579 QRSELRQQLEQLRARIKELAARAPAWLAAQDALER--------LREQSGEALADSQEVTAAMQQLLEREREATVErdeLA 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 758 ALKGALKEEVS-------SHDQEMDKLKEQYDAELqaLRE-----SVEEA---------TKNVEVLASRSNSSEQSQAEA 816
Cdd:COG3096 651 ARKQALESQIErlsqpggAEDPRLLALAERLGGVL--LSEiyddvTLEDApyfsalygpARHAIVVPDLSAVKEQLAGLE 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 817 DLREKVL---------------KEENEK--------------------LQGRIAElERRAAQLQRQMEDVKGDEAQAKET 861
Cdd:COG3096 729 DCPEDLYliegdpdsfddsvfdAEELEDavvvklsdrqwrysrfpevpLFGRAAR-EKRLEELRAERDELAEQYAKASFD 807
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 LRKCESEVQQLE----EALVHARKEEKEAtcARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMES 937
Cdd:COG3096 808 VQKLQRLHQAFSqfvgGHLAVAFAPDPEA--ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANL 885
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 938 -ERWHLDKTIEKLQKEMADIAEASRtsslELQKQlgeykEKNRRELAEMQTQLKekclevekarlaaskmQDELrlKEEE 1016
Cdd:COG3096 886 lADETLADRLEELREELDAAQEAQA----FIQQH-----GKALAQLEPLVAVLQ----------------SDPE--QFEQ 938
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1017 LQ-DYQRAEEEaltkRQLLEQSLKDLEYELEAKSHLK-DDRSRLIKQMEDKVSQLEIEL---EEERTNAdllseritwsR 1091
Cdd:COG3096 939 LQaDYLQAKEQ----QRRLKQQIFALSEVVQRRPHFSyEDAVGLLGENSDLNEKLRARLeqaEEARREA----------R 1004
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1092 EQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLE-----------GSYRSSKEGLVVQMEARIAELEDRLEN 1160
Cdd:COG3096 1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGvqadaeaeeraRIRRDELHEELSQNRSRRSQLEKQLTR 1084
|
650 660
....*....|....*....|....*.
gi 568961968 1161 EERDRANLQLSNRRLERKVKELVMQV 1186
Cdd:COG3096 1085 CEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
608-1258 |
4.24e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 64.68 E-value: 4.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 608 LLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKM 687
Cdd:TIGR00606 368 SLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKE 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDELDSTKRSEdrekgaliEELLQAKQDLQdlLIAKEEQEDLLRKRERELTALKGALKEEV 767
Cdd:TIGR00606 448 ILEKKQEELKFVIKELQQLEGSSDRILELD--------QELRKAERELS--KAEKNSLTETLKKEVKSLQNEKADLDRKL 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 SSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQ--SQAEADLREKVLKEENEKLQGRIAELERRAAQLQ 845
Cdd:TIGR00606 518 RKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEltSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLN 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 RQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRaLEKELEQARRELSQVSQEQ---KELLEKLRDE- 921
Cdd:TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLER-LKEEIEKSSKQRAMLAGATavySQFITQLTDEn 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 --------------AEQKEQLRKLKNEMES---ERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKnRRELAE 984
Cdd:TIGR00606 677 qsccpvcqrvfqteAELQEFISDLQSKLRLapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL-RNKLQK 755
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 985 MQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDyqraeeeaLTKRQLLEQSLKDLE--YELEAKSHLKDDRSRLIKQM 1062
Cdd:TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD--------VTIMERFQMELKDVErkIAQQAAKLQGSDLDRTVQQV 827
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1063 EDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEG 1142
Cdd:TIGR00606 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDA 907
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1143 LVvQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTD-----------QKDQLSLRLKAMKRQV 1211
Cdd:TIGR00606 908 KE-QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgkddYLKQKETELNTVNAQL 986
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 568961968 1212 EEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLKTL 1258
Cdd:TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
611-1256 |
6.26e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 6.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMERE 690
Cdd:pfam02463 217 EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 691 QHQTEIRDLQDQLSEMHDEL---DSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQ----EDLLRKRERELTALKGAL 763
Cdd:pfam02463 297 ELKSELLKLERRKVDDEEKLkesEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEeeeeEELEKLQEKLEQLEEELL 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KE--EVSSHDQEMDKLKEQydaELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAElerra 841
Cdd:pfam02463 377 AKkkLESERLSSAAKLKEE---ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE----- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 842 aqlqrqmedvkgdEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDE 921
Cdd:pfam02463 449 -------------EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQ-LGEYKEKNRRELAEMQTQLKEKCLEVEKAR 1000
Cdd:pfam02463 516 IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQkLVRALTELPLGARKLRLLIPKLKLPLKSIA 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1001 LAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELE---------AKSHLKDDRSRLIKQMEDKVSQLEI 1071
Cdd:pfam02463 596 VLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAkakesglrkGVSLEEGLAEKSEVKASLSELTKEL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1072 ELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARI 1151
Cdd:pfam02463 676 LEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKS 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1152 aELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRE 1231
Cdd:pfam02463 756 -RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
|
650 660
....*....|....*....|....*
gi 568961968 1232 LEEQMGVNEQLQGQLNSLKKGLRLK 1256
Cdd:pfam02463 835 LEELALELKEEQKLEKLAEEELERL 859
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
610-1259 |
6.87e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 6.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMRE---DLEELRVRHQSQVEETATLQRRLEESEGELRKslEELFQVK 686
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAEliiDLEELKLQELKLKEQAKKALEYYQLKEKLELE--EEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 687 MEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREkgalieellQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEE 766
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKE---------EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKS 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 767 VSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQ- 845
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKk 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 RQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELsqvsQEQKELLEKLRDEAEQK 925
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI----ELKQGKLTEEKEELEKQ 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 926 EQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQtQLKEKCLEVEKARLAASK 1005
Cdd:pfam02463 457 ELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK-DGVGGRIISAHGRLGDLG 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1006 MQDELRL------KEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTN 1079
Cdd:pfam02463 536 VAVENYKvaistaVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 ADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLE 1159
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1160 NEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKK---KLQRELEEQM 1236
Cdd:pfam02463 696 RRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKeeeKSELSLKEKE 775
|
650 660
....*....|....*....|...
gi 568961968 1237 GVNEQLQGQLNSLKKGLRLKTLS 1259
Cdd:pfam02463 776 LAEEREKTEKLKVEEEKEEKLKA 798
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
866-1251 |
1.03e-09 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 62.84 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 866 ESEVQQLEEALVHARKE----EKEATCARRALEKELEQARRELSQVSQEQKEL---LEKLRDEAEQKEQLRKLKNEMESE 938
Cdd:pfam05557 1 RAELIESKARLSQLQNEkkqmELEHKRARIELEKKASALKRQLDRESDRNQELqkrIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 939 RWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKclevekarlaaSKMQDELRLKEEELQ 1018
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSEL-----------EELQERLDLLKAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1019 DYQRAEEEALTKRQLL---EQSLKDLEYELEAKSH----LKDDRSRL--IKQMEDKVSQLEIE---LEEERTNADLLSER 1086
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLaeaEQRIKELEFEIQSQEQdseiVKNSKSELarIPELEKELERLREHnkhLNENIENKLLLKEE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1087 ITWSREQMEQMrsELLQEKAAKQDLECDKISLERQN---------------KDLKSRIIHLEG-------------SYRS 1138
Cdd:pfam05557 230 VEDLKRKLERE--EKYREEAATLELEKEKLEQELQSwvklaqdtglnlrspEDLSRRIEQLQQreivlkeenssltSSAR 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1139 SKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVD---------DEHLSLTDQKDQLSLRLKAMKR 1209
Cdd:pfam05557 308 QLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDgyrailesyDKELTMSNYSPQLLERIEEAED 387
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 568961968 1210 QVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKK 1251
Cdd:pfam05557 388 MTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQ 429
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
609-1016 |
1.04e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 609 LDQKNKLILEVSELQQQLQLEMKNQqnikeererMREDLEELRVRHQSqVEETATLQRRLEESEGELRKSLEELFQVKME 688
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQGQ---------MERQMAAIQGKNES-LEKVSSLTAQLESTKEMLRKVVEELTAKKMT 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 689 REQHQTEIRDLQDQLSEMHDELDSTKrSEDREKGALIEELLQAKQDLQDlliakeeQEDLLRKRERELTALKGALKEEvs 768
Cdd:pfam15921 491 LESSERTVSDLTASLQEKERAIEATN-AEITKLRSRVDLKLQELQHLKN-------EGDHLRNVQTECEALKLQMAEK-- 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 769 shdqemDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQ--- 845
Cdd:pfam15921 561 ------DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLElek 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 846 -----------RQMEDVKGDEAQAKETLRKCESEVQQLEEAL------VHARKEEKEATCAR-----RALEKELEQARRE 903
Cdd:pfam15921 635 vklvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYevlkrnFRNKSEEMETTTNKlkmqlKSAQSELEQTRNT 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 904 LSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEyKEKNRRELA 983
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE-KNKMAGELE 793
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 568961968 984 EMQTQ---LKEKCLEVE----KARLAASKMQDELRLKEEE 1016
Cdd:pfam15921 794 VLRSQerrLKEKVANMEvaldKASLQFAECQDIIQRQEQE 833
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
819-1255 |
1.06e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.86 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 819 REKVLKEENEKLQGRIAELERRAAQLqRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKE--EKEATCARRALEKE 896
Cdd:COG4717 55 ADELFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 897 LEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEmeserwhldktIEKLQKEMADIAEASRTSSLELQKQLGEYKE 976
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAE-----------LAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 977 KNRRELAEMQTQLKEKCLEVEKARLAASKMQDEL-RLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDR 1055
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELeAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1056 SRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEgs 1135
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE-- 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1136 yrssKEGLVVQMEARIAELEDR--LENEERDRANLQLSNRR--LERKVKELVMQVDDEHLSLTDQKDQLSLrlkamkrqv 1211
Cdd:COG4717 361 ----EELQLEELEQEIAALLAEagVEDEEELRAALEQAEEYqeLKEELEELEEQLEELLGELEELLEALDE--------- 427
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 568961968 1212 EEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRL 1255
Cdd:COG4717 428 EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
624-1254 |
1.20e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 63.05 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 624 QQLQLEMKNQQNIKEERERMREDLEELRVRHQSQveetATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQL 703
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQ----QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 704 SEMhDELDSTKRSEDREKGALIEELLQ---AKQDLQDLLIAKEEQ---------------EDLLRkRERELTALKGALKE 765
Cdd:PRK04863 575 SEA-RERRMALRQQLEQLQARIQRLAArapAWLAAQDALARLREQsgeefedsqdvteymQQLLE-RERELTVERDELAA 652
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 766 EVSSHDQEMDKLKEQ---YDAELQALRE--------------SVEEA---------TKNVEVLASRSNSSEQSQAEADLR 819
Cdd:PRK04863 653 RKQALDEEIERLSQPggsEDPRLNALAErfggvllseiyddvSLEDApyfsalygpARHAIVVPDLSDAAEQLAGLEDCP 732
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 820 EKVL---------------KEENEK--------------------LQGRIAElERRAAQLQRQMEDVKGDEAQAKETLRK 864
Cdd:PRK04863 733 EDLYliegdpdsfddsvfsVEELEKavvvkiadrqwrysrfpevpLFGRAAR-EKRIEQLRAEREELAERYATLSFDVQK 811
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 865 CESEVQQL----------------EEALVHARKEEKEATCARRALEKELEQARRELSQvSQEQKELLEKLRDEA------ 922
Cdd:PRK04863 812 LQRLHQAFsrfigshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQ-AKEGLSALNRLLPRLnllade 890
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 923 -------EQKEQLRKLKNEMESERWHlDKTIEKLQKEMADIA------EASRTSSLELQKQLGEYKEK--------NRR- 980
Cdd:PRK04863 891 tladrveEIREQLDEAEEAKRFVQQH-GNALAQLEPIVSVLQsdpeqfEQLKQDYQQAQQTQRDAKQQafaltevvQRRa 969
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 981 ------------ELAEMQTQLKEKcleVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELE-- 1046
Cdd:PRK04863 970 hfsyedaaemlaKNSDLNEKLRQR---LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQdl 1046
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 -------AKSHLKDDRSRLIKQMED---KVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKqdleCDKI 1116
Cdd:PRK04863 1047 gvpadsgAEERARARRDELHARLSAnrsRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW----CAVL 1122
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1117 SLERQNkDLKSRIIHLEGSYRSSKE---------GLVVQMEARIAELedrleneeRDRANLQLSNRRLERKVkELVMQVd 1187
Cdd:PRK04863 1123 RLVKDN-GVERRLHRRELAYLSADElrsmsdkalGALRLAVADNEHL--------RDVLRLSEDPKRPERKV-QFYIAV- 1191
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 1188 dehlsltdqKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQmgvNEQLQGQLNSLKKGLR 1254
Cdd:PRK04863 1192 ---------YQHLRERIRQDIIRTDDPVEAIEQMEIELSRLTEELTSR---EQKLAISSESVANIIR 1246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1015-1252 |
1.35e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.01 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1015 EELQDYQRAEEEALTKRQlleqslkdleyELEAKSHLKDDRSRLIKQMEDkvsQLEIELEEERTNADLLSERITWSREQM 1094
Cdd:COG4913 232 EHFDDLERAHEALEDARE-----------QIELLEPIRELAERYAAARER---LAELEYLRAALRLWFAQRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1095 EQMRSELLQEKAAKQDLEcdkisleRQNKDLKSRIIHLEGSYRSSKeGlvvqmeARIAELEDRLENEERDRANLQLSNRR 1174
Cdd:COG4913 298 EELRAELARLEAELERLE-------ARLDALREELDELEAQIRGNG-G------DRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 1175 LERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEqmgvneqLQGQLNSLKKG 1252
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE-------LEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
856-1077 |
1.42e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 AQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEM 935
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 936 ESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQtQLKEKCLEVEKARLAASKMQDELRLKEE 1015
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 1016 ELQDYQRAEEEALTKRQLLEQSL-KDLEYELEAKSHLKDDRSRLikqmEDKVSQLEIELEEER 1077
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLeKELAELAAELAELQQEAEEL----EALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
745-992 |
1.46e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.70 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 745 QEDLLRKRERELTALKGALKEEvsshDQEMDKLKEQYDA---ELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREK 821
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAEL----EKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 822 VLKEENEKLQGRIAELERRAAQLQRQ-MEDVKGDEAQAKETLRKcesevQQLEEALVHARKEEKEAtcarraLEKELEQA 900
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQpPLALLLSPEDFLDAVRR-----LQYLKYLAPARREQAEE------LRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 901 RRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRR 980
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
250
....*....|..
gi 568961968 981 ELAEMQTQLKEK 992
Cdd:COG4942 243 TPAAGFAALKGK 254
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
812-1063 |
1.74e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 812 SQAEADLREKvLKEENEKLQGRIAELERRAAQLQRQMEDVkgdeaqaketlrkcESEVQQLEEALVHARKEekeatcaRR 891
Cdd:COG4942 15 AAAQADAAAE-AEAELEQLQQEIAELEKELAALKKEEKAL--------------LKQLAALERRIAALARR-------IR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 892 ALEKELEQARRELSQVSQEQKELLEKLrdeAEQKEQLRKLKNEMESERWHldkTIEKLQKEMADIAEASRtsSLELQKQL 971
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAEL---EAQKEELAELLRALYRLGRQ---PPLALLLSPEDFLDAVR--RLQYLKYL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 972 GEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKrqlLEQSLKDLEYELEAKSHL 1051
Cdd:COG4942 145 APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQE 221
|
250
....*....|..
gi 568961968 1052 KDDRSRLIKQME 1063
Cdd:COG4942 222 AEELEALIARLE 233
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
674-1016 |
1.79e-09 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 61.97 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 674 ELRKSLE-ELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRsedrekgaLIEEL-----------LQAKQDLQDLLIA 741
Cdd:pfam05701 35 ERRKLVElELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKR--------LIEELklnleraqteeAQAKQDSELAKLR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 742 KEEQEDLLRKRER-----ELTALKG---ALKEEVSSHDQEMDKLKEQYDaelqALRESVEEATKNVEVLASRSNSSEQSQ 813
Cdd:pfam05701 107 VEEMEQGIADEASvaakaQLEVAKArhaAAVAELKSVKEELESLRKEYA----SLVSERDIAIKRAEEAVSASKEIEKTV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 814 AEADLREKVLKEENEKLQG--RIAELERRAAQLQRQMedvkgDEAQAKETLRKCESEVQQLEEALVHAR----------- 880
Cdd:pfam05701 183 EELTIELIATKESLESAHAahLEAEEHRIGAALAREQ-----DKLNWEKELKQAEEELQRLNQQLLSAKdlkskletasa 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 881 ---------------------KEEKEATCARRALEKELEQARRELsqvsQEQKELLEKLRDEAEQ-KEQLRKLKNEMESE 938
Cdd:pfam05701 258 llldlkaelaaymesklkeeaDGEGNEKKTSTSIQAALASAKKEL----EEVKANIEKAKDEVNClRVAAASLRSELEKE 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 939 RWHLDKTieKLQKEMADIAEASRTSSLELQKQ---LGEYKEKNRRE-LAEMQTQLKEKCLEVEKARLAASKMQDELRLKE 1014
Cdd:pfam05701 334 KAELASL--RQREGMASIAVSSLEAELNRTKSeiaLVQAKEKEAREkMVELPKQLQQAAQEAEEAKSLAQAAREELRKAK 411
|
..
gi 568961968 1015 EE 1016
Cdd:pfam05701 412 EE 413
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
796-1253 |
1.84e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.50 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 796 TKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVkgdeAQAKETLRKCESEVQQLEEA 875
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELC----AEAEEMRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 876 L--VHARKEEKEATCArralekELEQARRELSQVSQEQKELLEKlRDEAEQKEQLRKLKNE-----MESERWHLDKTIEK 948
Cdd:pfam01576 77 LheLESRLEEEEERSQ------QLQNEKKKMQQHIQDLEEQLDE-EEAARQKLQLEKVTTEakikkLEEDILLLEDQNSK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 949 LQKEMADIAE--ASRTSSL----ELQKQLGEYKEKNRRELAEMQTQLK--EKC-LEVEKARlaaSKMQDELRLKEEELQD 1019
Cdd:pfam01576 150 LSKERKLLEEriSEFTSNLaeeeEKAKSLSKLKNKHEAMISDLEERLKkeEKGrQELEKAK---RKLEGESTDLQEQIAE 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1020 YQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRS 1099
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1100 EL---LQEKAAKQDLECDKislERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLE 1176
Cdd:pfam01576 307 ELedtLDTTAAQQELRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1177 RKVKELVMQV--------DDEH--LSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQL 1246
Cdd:pfam01576 384 SENAELQAELrtlqqakqDSEHkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV 463
|
....*..
gi 568961968 1247 NSLKKGL 1253
Cdd:pfam01576 464 SSLESQL 470
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
764-1255 |
2.02e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 62.29 E-value: 2.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRiAELERRAAQ 843
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQMEDVKGDEAQAKETLRKCESEVQQL-----EEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEK- 917
Cdd:TIGR00618 265 LRARIEELRAQEAVLEETQERINRARKAAplaahIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQr 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 918 ------------LRDEAEQKEQLRKLKNEMESERWHL-----DKTI------------EKLQKEMADI-AEASRTSSLEL 967
Cdd:TIGR00618 345 rllqtlhsqeihIRDAHEVATSIREISCQQHTLTQHIhtlqqQKTTltqklqslckelDILQREQATIdTRTSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 968 QKQLGEYKEKNRRELAEMQTQLKEKCLEVEKAR-LAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDL----- 1041
Cdd:TIGR00618 425 QLAHAKKQQELQQRYAELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELqeepc 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1042 -----EYELEAKSHLKDD---RSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLEC 1113
Cdd:TIGR00618 505 plcgsCIHPNPARQDIDNpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1114 DKISLERQNKDLKSRI---IHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRaNLQLSNRRLERKVKELVMQVDDEH 1190
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTeklSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQ-ELALKLTALHALQLTLTQERVREH 663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1191 LSLTDQKDQLSLrlkamkrqvEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRL 1255
Cdd:TIGR00618 664 ALSIRVLPKELL---------ASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE 719
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
633-877 |
2.56e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 61.57 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 633 QQNIKEERERMREDLEELRvrhqsqvEETATLQRRLEESEGELR--KSLEELFQVKMEREQHQTEIRDLQDQLSEMHDEL 710
Cdd:COG3206 163 EQNLELRREEARKALEFLE-------EQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 711 DSTKRSEDREKGALIEELLQAKQDLQDLLIAK-EEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALR 789
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPVIQQlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 790 ESVEeatknVEVLASRSNSSEQSQAEADLREKVLkeENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEV 869
Cdd:COG3206 316 ASLE-----AELEALQAREASLQAQLAQLEARLA--ELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNV 388
|
....*...
gi 568961968 870 QQLEEALV 877
Cdd:COG3206 389 RVIDPAVV 396
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
914-1250 |
2.60e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 914 LLEKLRDEAEQKEQLRKLKNEmeserwHLDKTIEK---LQKEMADIaEASRTSSLELQKQLGEYKEKNRRELAEMQTQLK 990
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQDE------NLKELIEKkdhLTKELEDI-KMSLQRSMSTQKALEEDLQIATKTICQLTEEKE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 991 EKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRqllEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLE 1070
Cdd:pfam05483 335 AQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN---EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELK 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1071 IELEEErtnadllsERITWSREQMEQMRSELlqeKAAKQDLECDKISLERQNKDLKSRIIhlegSYRSSKEGLVVQMEar 1150
Cdd:pfam05483 412 KILAED--------EKLLDEKKQFEKIAEEL---KGKEQELIFLLQAREKEIHDLEIQLT----AIKTSEEHYLKEVE-- 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1151 iaELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSlrlkAMKRQVEEAEEEIDRLESSKKKLQR 1230
Cdd:pfam05483 475 --DLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEERMLKQIENLEEKEMNLRD 548
|
330 340
....*....|....*....|
gi 568961968 1231 ELEEqmgVNEQLQGQLNSLK 1250
Cdd:pfam05483 549 ELES---VREEFIQKGDEVK 565
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
810-1259 |
2.95e-09 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 61.85 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 810 EQSQAEADLREKVlKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQ------AKETLRKCESEVQQLEEALVHARKEE 883
Cdd:PRK11281 66 EQTLALLDKIDRQ-KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEetretlSTLSLRQLESRLAQTLDQLQNAQNDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 884 KEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRK-LKNEMESERWHLDKTIEKLQKEMADiaeASRT 962
Cdd:PRK11281 145 AEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPsQRVLLQAEQALLNAQNDLQRKSLEG---NTQL 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 963 SSLeLQKQLGEYKEKNRR---ELAEMQTQLKEKclevekaRLAASKMQDElrlKEEELQDYQRAEEEALTKRQlLEQSLK 1039
Cdd:PRK11281 222 QDL-LQKQRDYLTARIQRlehQLQLLQEAINSK-------RLTLSEKTVQ---EAQSQDEAARIQANPLVAQE-LEINLQ 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1040 DLEYELEAKSHLKD--DRSRLIKQMEDKVSQLEIELEEERT--NADLLSERItwsreqmeqmrseLLQEkaaKQDLECDK 1115
Cdd:PRK11281 290 LSQRLLKATEKLNTltQQNLRVKNWLDRLTQSERNIKEQISvlKGSLLLSRI-------------LYQQ---QQALPSAD 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1116 IslerqNKDLKSRI--IHLEGSYRSSKEGLVVQMEARIAELEDRLENE----ERDRANLQLSNRR--LERKVKELVMQVD 1187
Cdd:PRK11281 354 L-----IEGLADRIadLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEvtdeVRDALLQLLDERRelLDQLNKQLNNQLN 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1188 dehLSLTDQKDQlslrlkamkRQveeaeeeidrLESSKKKLQRELEEQM---------------GVNEQLQGQLNSLKKG 1252
Cdd:PRK11281 429 ---LAINLQLNQ---------QQ----------LLSVSDSLQSTLTQQIfwvnsnkpmdldwlkAFPQALKDQFKSLKIT 486
|
....*..
gi 568961968 1253 LRLKTLS 1259
Cdd:PRK11281 487 VSFSNLW 493
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
875-1087 |
3.11e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 3.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 875 ALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMA 954
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 955 diaeasrtsslELQKQLGEYKEKNRRELAEMQTQLKEKCLEV--------EKARLA------ASKMQDELRLKEEELQDY 1020
Cdd:COG4942 94 -----------ELRAELEAQKEELAELLRALYRLGRQPPLALllspedflDAVRRLqylkylAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 1021 QRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERI 1087
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
620-1032 |
3.16e-09 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 61.38 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 620 SELQQ-QLQLEMKNQQN--IKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEI 696
Cdd:pfam10174 303 SELLAlQTKLETLTNQNsdCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEI 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 697 RDLQDQlsemhdeLDSTKRSedrekgalIEELLQAKQDLQDLLIAKEEQEDLLRKREREL--------TALkGALKEEVS 768
Cdd:pfam10174 383 RDLKDM-------LDVKERK--------INVLQKKIENLQEQLRDKDKQLAGLKERVKSLqtdssntdTAL-TTLEEALS 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 769 SHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQM 848
Cdd:pfam10174 447 EKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 849 EdvkgdeaQAKETLRKCESEVQQLEEALVHARKEEkEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQL 928
Cdd:pfam10174 527 E-------QKKEECSKLENQLKKAHNAEEAVRTNP-EINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDK 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 929 RKLKNEMES--ERWHLDKTIEKLQKEMADiAEASRTSSLELQKQLGEYKEKNR----RELAEMQTQLKEKCLEVEKARLA 1002
Cdd:pfam10174 599 DKKIAELESltLRQMKEQNKKVANIKHGQ-QEMKKKGAQLLEEARRREDNLADnsqqLQLEELMGALEKTRQELDATKAR 677
|
410 420 430
....*....|....*....|....*....|....
gi 568961968 1003 ASKMQDELRLKEEEL----QDYQRAEEEALTKRQ 1032
Cdd:pfam10174 678 LSSTQQSLAEKDGHLtnlrAERRKQLEEILEMKQ 711
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
620-1254 |
4.06e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 61.51 E-value: 4.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 620 SELQQQLQLEMKNQQNIKEER------ERMREDLEELRVRHQSQVEETATLQRRLEESEGELrksleelfqvkmerEQHQ 693
Cdd:PRK04863 324 SDLEQDYQAASDHLNLVQTALrqqekiERYQADLEELEERLEEQNEVVEEADEQQEENEARA--------------EAAE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 694 TEIRDLQDQLSEMHDELD--STKRSEDREKGALIEEllqAKQ--DLQDLLIAK-EEQEDLLRKRERELTALKGALKEEVS 768
Cdd:PRK04863 390 EEVDELKSQLADYQQALDvqQTRAIQYQQAVQALER---AKQlcGLPDLTADNaEDWLEEFQAKEQEATEELLSLEQKLS 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 769 SHDQemdkLKEQYDAELQALRESVEEatknvevlASRSNSSEQSQ-AEADLRE-KVLKEENEKLQGRIAELERRAAQlQR 846
Cdd:PRK04863 467 VAQA----AHSQFEQAYQLVRKIAGE--------VSRSEAWDVAReLLRRLREqRHLAEQLQQLRMRLSELEQRLRQ-QQ 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 847 QMEDVKGDEAQAKETLRKCESEVQQLEEalvharkeekeatcarralekELEQARRELSQVSQEQKELLEKLRDEAEQKE 926
Cdd:PRK04863 534 RAERLLAEFCKRLGKNLDDEDELEQLQE---------------------ELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 927 QLRKlKNEMESERWHldktieklqkemadiaeASRTSSLELQKQLGEYKEKNRRELAEMQTQL-KEKCLEVEKARLAASK 1005
Cdd:PRK04863 593 ARIQ-RLAARAPAWL-----------------AAQDALARLREQSGEEFEDSQDVTEYMQQLLeRERELTVERDELAARK 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1006 MQDELRLkeEELQdyQRAEEEALTKRQLLEQ-------------SLKDLEYELEAKSHLK-----DDRSRLIKQMEDKVS 1067
Cdd:PRK04863 655 QALDEEI--ERLS--QPGGSEDPRLNALAERfggvllseiyddvSLEDAPYFSALYGPARhaivvPDLSDAAEQLAGLED 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1068 QLE----IE-----LEEERTNADLLSERIT---------WSR-------------EQMEQMRSE--LLQEKAAKQDLECD 1114
Cdd:PRK04863 731 CPEdlylIEgdpdsFDDSVFSVEELEKAVVvkiadrqwrYSRfpevplfgraareKRIEQLRAEreELAERYATLSFDVQ 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1115 KisLERQNKDLKSRI-IHLEGSYRSSKEGLVVQMEARIAELEDRL----ENEERDRANLQLSNRRLE--RKVKELVMQVD 1187
Cdd:PRK04863 811 K--LQRLHQAFSRFIgSHLAVAFEADPEAELRQLNRRRVELERALadheSQEQQQRSQLEQAKEGLSalNRLLPRLNLLA 888
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1188 DEHLSltdqkdqlslrlkamkRQVEEAEEEIDRLESSKKKLQR------ELEEQMGV-------NEQLQGQLNSLKKGLR 1254
Cdd:PRK04863 889 DETLA----------------DRVEEIREQLDEAEEAKRFVQQhgnalaQLEPIVSVlqsdpeqFEQLKQDYQQAQQTQR 952
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
665-903 |
5.14e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 5.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 665 QRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLsemhdeldstKRSEDRekgalIEELLQAKQDLQDLLIAKEE 744
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----------AALERR-----IAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 745 QEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLK 824
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 825 EENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRE 903
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
688-1044 |
5.26e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.52 E-value: 5.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDELdsTKRSEDREKGALIEELLQAKQDLQDLLIAkeEQEDLLRKRERELTALKGALKEev 767
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEK--AREVERRRKLEEAEKARQAEMDRQAAIYA--EQERMAMERERELERIRQEERK-- 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 sshdQEMDKLKEQYDA-ELQALREsveeaTKNVEVLASRSNSSEQSQAEADLREKVLKEENE-KLQGRIAELERRAAQL- 844
Cdd:pfam17380 360 ----RELERIRQEEIAmEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQrKIQQQKVEMEQIRAEQe 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 845 ---QRQMEDVKGDEAQAKETLRKCESEVQQLEEALvhaRKEEKEatcaRRALEKELEQARRELSQVSQEQKELLEKLRDE 921
Cdd:pfam17380 431 earQREVRRLEEERAREMERVRLEEQERQQQVERL---RQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMeserwhldktiekLQKEMADiaeasrtsslelqKQLGEYKEKNRRELAEMqtqlKEKCLEVEKARl 1001
Cdd:pfam17380 504 RKQAMIEEERKRKL-------------LEKEMEE-------------RQKAIYEEERRREAEEE----RRKQQEMEERR- 552
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568961968 1002 aasKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYE 1044
Cdd:pfam17380 553 ---RIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
788-955 |
5.29e-09 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 60.18 E-value: 5.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 788 LRESVEEAT-KNVEVLASRSNSSEQSQAEADLREKVL--KEENEKLQGRI-AELERRAAQLQRQMEDVKgdeaQAKETLR 863
Cdd:PRK12704 24 VRKKIAEAKiKEAEEEAKRILEEAKKEAEAIKKEALLeaKEEIHKLRNEFeKELRERRNELQKLEKRLL----QKEENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 864 KCESEVQQLEEALVHARKEEKEatcarraLEKELEQARRELSQVSQEQKELLEKL----RDEAEQkEQLRKLKNEMESER 939
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQ-------KQQELEKKEEELEELIEEQLQELERIsgltAEEAKE-ILLEKVEEEARHEA 171
|
170
....*....|....*.
gi 568961968 940 WHLDKTIEKLQKEMAD 955
Cdd:PRK12704 172 AVLIKEIEEEAKEEAD 187
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
595-1250 |
6.56e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.83 E-value: 6.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 595 SNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERerMREDLEELRVRHQSQVEETATLQRRLEESEGE 674
Cdd:TIGR00606 161 SNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQ--MELKYLKQYKEKACEIRDQITSKEAQLESSRE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 675 LRKS----LEELFQVKMEREQHQTEIRDLQDQLSemhdELDSTKRSEDREKGALIEELLQAKQDLQDLL---------IA 741
Cdd:TIGR00606 239 IVKSyeneLDPLKNRLKEIEHNLSKIMKLDNEIK----ALKSRKKQMEKDNSELELKMEKVFQGTDEQLndlyhnhqrTV 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 742 KEEQEDLLR---------KRERELTALKGALKEEVSSHDQEMDKLKEQ---YDAELQALRESVE------EATKNVEVLA 803
Cdd:TIGR00606 315 REKERELVDcqreleklnKERRLLNQEKTELLVEQGRLQLQADRHQEHiraRDSLIQSLATRLEldgferGPFSERQIKN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 804 SRSNSSEQSQAEADLREKVLKEENEKL---QGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHAR 880
Cdd:TIGR00606 395 FHTLVIERQEDEAKTAAQLCADLQSKErlkQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 881 KEEKEATCARRALEKELEQA-----RRELSQVSQEQKELLEKLRDEAEQKEQL------RKLKNEMESERWHLDKTIEKL 949
Cdd:TIGR00606 475 ELDQELRKAERELSKAEKNSltetlKKEVKSLQNEKADLDRKLRKLDQEMEQLnhhtttRTQMEMLTKDKMDKDEQIRKI 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 950 QKEMADIAeASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQ-------- 1021
Cdd:TIGR00606 555 KSRHSDEL-TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEdklfdvcg 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1022 -RAEEEALTK-RQLLEQSLKDLEyELEAKSHLKD-------DRSRLIKQMEDKVSQLEIELEEerTNADLLSERITWSRE 1092
Cdd:TIGR00606 634 sQDEESDLERlKEEIEKSSKQRA-MLAGATAVYSqfitqltDENQSCCPVCQRVFQTEAELQE--FISDLQSKLRLAPDK 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1093 QME--------QMRSELLQEKAAKQDLECDKISLE----RQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDrLEN 1160
Cdd:TIGR00606 711 LKSteselkkkEKRRDEMLGLAPGRQSIIDLKEKEipelRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLT 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1161 EERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKdqlslrlkaMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNE 1240
Cdd:TIGR00606 790 DVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ---------VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860
|
730
....*....|
gi 568961968 1241 QLQGQLNSLK 1250
Cdd:TIGR00606 861 HLKSKTNELK 870
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
638-1254 |
9.69e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 59.97 E-value: 9.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 638 EERERMREDLEELRVRHQSQVEETATLQRRLEESEGELrksleelfqvkmerEQHQTEIRDLQDQLSEMHDELDSTKRSE 717
Cdd:COG3096 347 EKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARL--------------EAAEEEVDSLKSQLADYQQALDVQQTRA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 718 DREKGALiEELLQAKQ--DLQDLLI--AKEEQEDlLRKRERELTALKGALKEEVSshdqEMDKLKEQYDAELQALRESVE 793
Cdd:COG3096 413 IQYQQAV-QALEKARAlcGLPDLTPenAEDYLAA-FRAKEQQATEEVLELEQKLS----VADAARRQFEKAYELVCKIAG 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 794 EatknvevlASRSNSSEQS-QAEADLRE-KVLKEENEKLQGRIAELERRAAQLQRQmedvkgdEAQAKETlrkCESEVQQ 871
Cdd:COG3096 487 E--------VERSQAWQTArELLRRYRSqQALAQRLQQLRAQLAELEQRLRQQQNA-------ERLLEEF---CQRIGQQ 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 872 LEEALvharkeekeatcarrALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESE--RWHldKTIEKL 949
Cdd:COG3096 549 LDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapAWL--AAQDAL 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 950 QKemadiaeasrtssleLQKQLGEYKEKNRRELAEMQTQL-KEKCLEVEKARLAASKmqDELRLKEEELQDYQRAEEEAL 1028
Cdd:COG3096 612 ER---------------LREQSGEALADSQEVTAAMQQLLeREREATVERDELAARK--QALESQIERLSQPGGAEDPRL 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1029 tkRQLLEQ-------------SLKDLEYeLEA------KSHLKDDRSRLIKQMEDKVSQLE----IELE----------- 1074
Cdd:COG3096 675 --LALAERlggvllseiyddvTLEDAPY-FSAlygparHAIVVPDLSAVKEQLAGLEDCPEdlylIEGDpdsfddsvfda 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1075 EERTNADL--LSER-ITWSR-------------EQMEQMRSELLQEKAAKQDLECDKISLERQNKDLkSRII--HLEGSY 1136
Cdd:COG3096 752 EELEDAVVvkLSDRqWRYSRfpevplfgraareKRLEELRAERDELAEQYAKASFDVQKLQRLHQAF-SQFVggHLAVAF 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1137 RSSKEGLVVQMEARIAELEDRLEN----EERDRANLQLSNRRLE--RKVKELVMQVDDEHlsltdqkdqLSLRLKAMKRQ 1210
Cdd:COG3096 831 APDPEAELAALRQRRSELERELAQhraqEQQLRQQLDQLKEQLQllNKLLPQANLLADET---------LADRLEELREE 901
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 568961968 1211 VEEAEEEIDRLESSKKKLqRELEEQMGV-------NEQLQGQLNSLKKGLR 1254
Cdd:COG3096 902 LDAAQEAQAFIQQHGKAL-AQLEPLVAVlqsdpeqFEQLQADYLQAKEQQR 951
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
604-925 |
1.94e-08 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 58.37 E-value: 1.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELF 683
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQ 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEdrekgALIEELLQAKQDLQDLLIAKeeqedllrkrERELTALKGAL 763
Cdd:pfam07888 196 ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKE-----AENEALLEELRSLQERLNAS----------ERKVEGLGEEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KEEVSSHDQEMDKLkeqYDAELQALRESVEEATKNvevLASRSNSSEQSQAEADLREKVLKEEnEKLQGRIAELERRAAQ 843
Cdd:pfam07888 261 SSMAAQRDRTQAEL---HQARLQAAQLTLQLADAS---LALREGRARWAQERETLQQSAEADK-DRIEKLSAELQRLEER 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQ-MEDVKGDEAQAKEtlrKCESEVQQLEealvhARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEA 922
Cdd:pfam07888 334 LQEErMEREKLEVELGRE---KDCNRVQLSE-----SRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVA 405
|
...
gi 568961968 923 EQK 925
Cdd:pfam07888 406 DAK 408
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
608-851 |
2.47e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 608 LLDQKNKLILEVSELQQQLQlEMKNQQNIKEERERMREDLEELR---VRHQSQVEETATLQ---RRLEESEGELRKSLEE 681
Cdd:COG4913 615 LEAELAELEEELAEAEERLE-ALEAELDALQERREALQRLAEYSwdeIDVASAEREIAELEaelERLDASSDDLAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 682 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 761
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 762 ALKEEVSSHDQEMDKL-------KEQYDAELQALRESVEEATKNVEVLAsRSNSSEQSQAEADLREKVLKEENEKLQGRI 834
Cdd:COG4913 774 RIDALRARLNRAEEELeramrafNREWPAETADLDADLESLPEYLALLD-RLEEDGLPEYEERFKELLNENSIEFVADLL 852
|
250
....*....|....*..
gi 568961968 835 AELERRAAQLQRQMEDV 851
Cdd:COG4913 853 SKLRRAIREIKERIDPL 869
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
604-1019 |
2.67e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQlemkNQQNIKEERERMREDLEELrvrhqsQVEETATLQRRLEESEGELRKSLEELF 683
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLE----ELRELEEELEELEAELAEL------QEELEELLEQLSLATEEELQDLAEELE 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKrsEDREKGALIEELLQAKQDLQDL--LIAKEEQEDLLRKRERELTALKG 761
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLE--NELEAAALEERLKEARLLLLIAaaLLALLGLGGSLLSLILTIAGVLF 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 762 ALKEEVSSHDQEMDKLKEQYDAELQALResveeatknvevLASRSNSSEQSQAEADLREKVLKEENEKlqGRIAELERRA 841
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQ------------ALPALEELEEEELEELLAALGLPPDLSP--EELLELLDRI 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 842 AQLQRQMEDVKGDEAQAKetLRKCESEVQQL--------EEALVHARKEEKEatcaRRALEKELEQARRELSQVSQEQKE 913
Cdd:COG4717 347 EELQELLREAEELEEELQ--LEELEQEIAALlaeagvedEEELRAALEQAEE----YQELKEELEELEEQLEELLGELEE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 914 LLEKLrDEAEQKEQLRKLKNEMESerwhLDKTIEKLQKEMADIaeASRTSSLELQKQLgeykEKNRRELAEMQTQLKEKC 993
Cdd:COG4717 421 LLEAL-DEEELEEELEELEEELEE----LEEELEELREELAEL--EAELEQLEEDGEL----AELLQELEELKAELRELA 489
|
410 420
....*....|....*....|....*.
gi 568961968 994 LEVEKARLAASKMQDELRLKEEELQD 1019
Cdd:COG4717 490 EEWAALKLALELLEEAREEYREERLP 515
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
893-1256 |
3.08e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.11 E-value: 3.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 893 LEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIaeasRTSSLELQKQLG 972
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI----KNKLLKLELLLS 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 973 EYKEKNRRelaemQTQLKEKCLEVEKARlaaSKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLK 1052
Cdd:TIGR04523 205 NLKKKIQK-----NKSLESQISELKKQN---NQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1053 DDRSRLIKQMEDKVSQLEIELeeertnadllseritwsreqmeqmrSELLQEKaaKQDLecdkislerqNKDLKSRIIHL 1132
Cdd:TIGR04523 277 EQNNKKIKELEKQLNQLKSEI-------------------------SDLNNQK--EQDW----------NKELKSELKNQ 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGSYRSSKEGLVvQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQvddehlsltdqkdqlslrLKAMKRQVE 1212
Cdd:TIGR04523 320 EKKLEEIQNQIS-QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE------------------IEKLKKENQ 380
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568961968 1213 EAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLK 1256
Cdd:TIGR04523 381 SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
891-1233 |
3.22e-08 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 57.94 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 891 RALEKELEQARRELSQVSQEQKELL---EKLRDEAEQ-KEQLRKLKNEMESERWHLDKTIEKLQKEMADIaEASRTSSLE 966
Cdd:pfam06160 89 DEIEELLDDIEEDIKQILEELDELLeseEKNREEVEElKDKYRELRKTLLANRFSYGPAIDELEKQLAEI-EEEFSQFEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 967 LQKQlGEYkEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDyqraeeealTKRQLLEQslkdlEYELE 1046
Cdd:pfam06160 168 LTES-GDY-LEAREVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEELKE---------GYREMEEE-----GYALE 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 AKSHLKDdrsrlIKQMEDKVSQLEIELEE-ERTNADLLSERITwsrEQMEQMRSELLQEKAAKQDLE--CDKIS-----L 1118
Cdd:pfam06160 232 HLNVDKE-----IQQLEEQLEENLALLENlELDEAEEALEEIE---ERIDQLYDLLEKEVDAKKYVEknLPEIEdylehA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1119 ERQNKDLKSRIIHLEGSYRSSKEGLVVQM--EARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDehlsLTDQ 1196
Cdd:pfam06160 304 EEQNKELKEELERVQQSYTLNENELERVRglEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEE----IEEE 379
|
330 340 350
....*....|....*....|....*....|....*..
gi 568961968 1197 KDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELE 1233
Cdd:pfam06160 380 QEEFKESLQSLRKDELEAREKLDEFKLELREIKRLVE 416
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
559-1238 |
3.89e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 559 LKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMknQQNIKE 638
Cdd:pfam05483 65 LKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKL--EEEIQE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 639 ERERMRED---------LEELRVR-------HQSQVEETATLQRRLEESEGELRKSLEEL-FQVKMEREQHQTEIRDLQD 701
Cdd:pfam05483 143 NKDLIKENnatrhlcnlLKETCARsaektkkYEYEREETRQVYMDLNNNIEKMILAFEELrVQAENARLEMHFKLKEDHE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 702 QLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHD---QEMDKLK 778
Cdd:pfam05483 223 KIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDhltKELEDIK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 779 ---EQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQlqrqmedvkgde 855
Cdd:pfam05483 303 mslQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQ------------ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 aqakeTLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEqarrELSQVSQEQKELLEklrdeaeQKEQLRKLKNEM 935
Cdd:pfam05483 371 -----RLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE----ELKKILAEDEKLLD-------EKKQFEKIAEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 936 ESERWHLDKTIEKLQKEMADI---AEASRTSSLELQKQLGEYK---EKNRRELAEMQTQLKEKCLEVEKARLAASKMQDE 1009
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLeiqLTAIKTSEEHYLKEVEDLKtelEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1010 LRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA-KSHLKDDRSRL---IKQMEDKVSQLEIELEEERTNADLLSE 1085
Cdd:pfam05483 515 LKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESvREEFIQKGDEVkckLDKSEENARSIEYEVLKKEKQMKILEN 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1086 RITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDR 1165
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLL 674
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1166 ANLQLS--------------NRRLERKVKELVMQVD-------------DEHLSLTDQKDQ--------LSLRLKAMKRQ 1210
Cdd:pfam05483 675 EEVEKAkaiadeavklqkeiDKRCQHKIAEMVALMEkhkhqydkiieerDSELGLYKNKEQeqssakaaLEIELSNIKAE 754
|
730 740
....*....|....*....|....*...
gi 568961968 1211 VEEAEEEIDRLESSKKKLQRELEEQMGV 1238
Cdd:pfam05483 755 LLSLKKQLEIEKEEKEKLKMEAKENTAI 782
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
722-886 |
4.32e-08 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 57.48 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 722 GALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKgalKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNV-- 799
Cdd:PRK12704 17 GAVIGYFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIK---KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLlq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 800 --EVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKG---DEAQaKETLRKCESEVQqlEE 874
Cdd:PRK12704 94 keENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGltaEEAK-EILLEKVEEEAR--HE 170
|
170
....*....|..
gi 568961968 875 ALVHARKEEKEA 886
Cdd:PRK12704 171 AAVLIKEIEEEA 182
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
604-976 |
4.38e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 57.91 E-value: 4.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 604 EGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLeelrvrhQSQVEetaTLQRRLEESEGELRKSLEELF 683
Cdd:pfam10174 356 EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVL-------QKKIE---NLQEQLRDKDKQLAGLKERVK 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLliakEEQEDLLRKRERELTALKGAL 763
Cdd:pfam10174 426 SLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQPELTEKESSLIDL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 KEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKV---------LKEENEKLQgri 834
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIrlleqevarYKEESGKAQ--- 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 835 AELERRAAQLqRQMEDVKGDEAQAKETLRKCESevQQLEEALVHARKEEKEATCARRALEKELEQARRElsqvsqeqkel 914
Cdd:pfam10174 579 AEVERLLGIL-REVENEKNDKDKKIAELESLTL--RQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR----------- 644
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 915 lEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASR---TSSLELQKQLGEYKE 976
Cdd:pfam10174 645 -EDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGhltNLRAERRKQLEEILE 708
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
814-977 |
5.37e-08 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 55.32 E-value: 5.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 814 AEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCArral 893
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 894 eKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGE 973
Cdd:COG1579 89 -KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....
gi 568961968 974 YKEK 977
Cdd:COG1579 168 LAAK 171
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
602-1221 |
8.12e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.83 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 602 PSEGNSLLDQknklILEVSELQQ----------QLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEES 671
Cdd:PRK01156 148 PAQRKKILDE----ILEINSLERnydklkdvidMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 672 EGE----------LRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIA 741
Cdd:PRK01156 224 SIEynnamddynnLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKY 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 742 KEEQEDLlrkreRELtaLKGaLKEEVSSHDQEMDKLkeqydAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREK 821
Cdd:PRK01156 304 KNDIENK-----KQI--LSN-IDAEINKYHAIIKKL-----SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 822 VLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEekeatcaRRALEKELEQAR 901
Cdd:PRK01156 371 SIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR-------IRALRENLDELS 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 902 RELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESErwhLDKTIEKLQKEMADIAEASRTsslelQKQLGEYKEKNR-R 980
Cdd:PRK01156 444 RNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSR---LEEKIREIEIEVKDIDEKIVD-----LKKRKEYLESEEiN 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 981 ELAEMQTQLKEKCLEVEKArlaaskMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDL--------EYELEAKSHLK 1052
Cdd:PRK01156 516 KSINEYNKIESARADLEDI------KIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWlnalavisLIDIETNRSRS 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1053 DDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQdlecdkiSLERQNKDLKSRIIHL 1132
Cdd:PRK01156 590 NEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIE-------KLRGKIDNYKKQIAEI 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGSYRSSKEglvvqMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDehlsLTDQKDQLSLRLKAMKRqVE 1212
Cdd:PRK01156 663 DSIIPDLKE-----ITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE----LSDRINDINETLESMKK-IK 732
|
....*....
gi 568961968 1213 EAEEEIDRL 1221
Cdd:PRK01156 733 KAIGDLKRL 741
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
806-1133 |
8.32e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 806 SNSSEQSQAEADLREKVLKEENEKLQgriaELERRaaqlqRQMEDvkgdeaqaKETLRKCESEVQqleeALVHArKEEKE 885
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAR----EVERR-----RKLEE--------AEKARQAEMDRQ----AAIYA-EQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 886 ATCARRALEK-ELEQARRELSQVSQEQKEL-------LEKLRDEAEQKEQlrKLKNEMESERWHLDKTIE---KLQKEMA 954
Cdd:pfam17380 343 AMERERELERiRQEERKRELERIRQEEIAMeisrmreLERLQMERQQKNE--RVRQELEAARKVKILEEErqrKIQQQKV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 955 DIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEaltKRQLL 1034
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQ---RRKIL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1035 EqslKDLEYELEAKSHLKDDRSRLIKQMEDKvsQLEIELEEERTNADllSERitwsREQMEQMRSELLQEKAAKQDLECD 1114
Cdd:pfam17380 498 E---KELEERKQAMIEEERKRKLLEKEMEER--QKAIYEEERRREAE--EER----RKQQEMEERRRIQEQMRKATEERS 566
|
330
....*....|....*....
gi 568961968 1115 KISLERQNKDLKSRIIHLE 1133
Cdd:pfam17380 567 RLEAMEREREMMRQIVESE 585
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
856-1015 |
8.58e-08 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 56.76 E-value: 8.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 AQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQlrklknem 935
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ-------- 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 936 eserwhldKTIEKLQKEMADIAEASRtsslelQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEE 1015
Cdd:PRK00409 577 --------QAIKEAKKEADEIIKELR------QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
674-1103 |
8.64e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.88 E-value: 8.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 674 ELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEdrekGALIEELLQAKQDLQDLLIAKEEQEDLlrkre 753
Cdd:COG3096 279 ERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE----SDLEQDYQAASDHLNLVQTALRQQEKI----- 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 754 reltalkgalkeevsshdqemdklkEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGR 833
Cdd:COG3096 350 -------------------------ERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 834 IAELERRAAQLQ---RQMEDVKG-------DEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRE 903
Cdd:COG3096 405 LDVQQTRAIQYQqavQALEKARAlcglpdlTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKI 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 904 LSQVSQEQ-----KELLEKLRDE---AEQKEQLRKLKNEMEsERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYK 975
Cdd:COG3096 485 AGEVERSQawqtaRELLRRYRSQqalAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELE 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 976 EKnRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELqdyqRAEEEALTkrQLLEQSLKDLEyeleakshlkdDR 1055
Cdd:COG3096 564 AQ-LEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAW----LAAQDALE--RLREQSGEALA-----------DS 625
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568961968 1056 SRLIKQMEDKVSQlEIELEEERtnaDLLSERitwsREQMEQMRSELLQ 1103
Cdd:COG3096 626 QEVTAAMQQLLER-EREATVER---DELAAR----KQALESQIERLSQ 665
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
618-1007 |
8.76e-08 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 56.38 E-value: 8.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLemknqqnIKEERERMREDLEELRVRHQSQVEETATLQRRLEEsegeLRKSLEElfqvkmEREQHQTEIR 697
Cdd:PRK04778 106 EINEIESLLDL-------IEEDIEQILEELQELLESEEKNREEVEQLKDLYRE----LRKSLLA------NRFSFGPALD 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 698 DLQDQLSEMHDELDS-TKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTA----LKGALKEEVSSH-- 770
Cdd:PRK04778 169 ELEKQLENLEEEFSQfVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDqlqeLKAGYRELVEEGyh 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 771 ------DQEMDKLKEQYDAELQALRE-SVEEATKNVEVLASRSNS-SEQSQAEADLReKVLKEENEKLQGRIAELERRAA 842
Cdd:PRK04778 249 ldhldiEKEIQDLKEQIDENLALLEElDLDEAEEKNEEIQERIDQlYDILEREVKAR-KYVEKNSDTLPDFLEHAKEQNK 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVK------GDEAqakETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLE 916
Cdd:PRK04778 328 ELKEEIDRVKqsytlnESEL---ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 917 KLR----DEAEQKEQLRKLKNEMESERWHLDKT-IEKLQKEMADIAEASRTSSLELQKQLGEYK---EKNRRELAEMQTQ 988
Cdd:PRK04778 405 MLQglrkDELEAREKLERYRNKLHEIKRYLEKSnLPGLPEDYLEMFFEVSDEIEALAEELEEKPinmEAVNRLLEEATED 484
|
410 420
....*....|....*....|...
gi 568961968 989 ---LKEKCLE-VEKARLAASKMQ 1007
Cdd:PRK04778 485 vetLEEETEElVENATLTEQLIQ 507
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
618-991 |
1.43e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.18 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIR 697
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 698 DLQDQLSEMHDELDSTKRSEDREKGALieellqakqdlqdlliakEEQEDLLRKRERELTALKGALKEEVSSHDqEMDKL 777
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQL------------------KVLSRSINKIKQNLEQKQKELKSKEKELK-KLNEE 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 778 KEQYDAELQALRESVEEATKNVEVLASRSNSSEQ--SQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDE 855
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkiSDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 AQAKETLRKCESEVQQLEEALvharkEEKEATCARraLEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEM 935
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEI-----EEKEKKISS--LEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 936 ESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEY-----KEKNRRELAEMQTQLKE 991
Cdd:TIGR04523 658 RNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYitrmiRIKDLPKLEEKYKEIEK 718
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
807-1059 |
1.51e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.79 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 807 NSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEaQAKETLrkceSEVQQLEEALVHARKEEKEA 886
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSE-EAKLLL----QQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 887 TCARRALEKELEQARRELSQVSQEQ--KELLEKLRD-EAEQKEQLRKLKNEmeserwhlDKTIEKLQKEMADIAEasrts 963
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPviQQLRAQLAElEAELAELSARYTPN--------HPDVIALRAQIAALRA----- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 964 slELQKQLGEYKEKNRRELAEMQTQLKEkcLEVEKARLaaSKMQDELRLKEEELQDYQRaeeEALTKRQLLEQSLKDLEy 1043
Cdd:COG3206 306 --QLQQEAQRILASLEAELEALQAREAS--LQAQLAQL--EARLAELPELEAELRRLER---EVEVARELYESLLQRLE- 375
|
250
....*....|....*.
gi 568961968 1044 ELEAKSHLKDDRSRLI 1059
Cdd:COG3206 376 EARLAEALTVGNVRVI 391
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
603-851 |
1.69e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 603 SEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEET----ATLQRRLEESEGELRKS 678
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLkeqiKSIEKEIENLNGKKEEL 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 679 LEELfqvkmerEQHQTEIRDLQDQLSEMhdeldstkrSEDREKgaLIEELLQAKQDLQDLliakEEQEDLLRKRERELTA 758
Cdd:TIGR02169 867 EEEL-------EELEAALRDLESRLGDL---------KKERDE--LEAQLRELERKIEEL----EAQIEKKRKRLSELKA 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 759 LKGALKEEVSSHDQEMDKLKEQYDAELQA--LRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAE 836
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEEELSLedVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
250
....*....|....*
gi 568961968 837 LERRAAQLQRQMEDV 851
Cdd:TIGR02169 1005 ILERIEEYEKKKREV 1019
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
876-1065 |
1.77e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 55.55 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 876 LVHARKEEKEATCARRALEKELEQARRELSQVSQEQkelleklrdEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMAD 955
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA---------LLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 956 iaeasRTSSLELQKqlgEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRaeEEAltKRQLLE 1035
Cdd:PRK12704 94 -----KEENLDRKL---ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA--EEA--KEILLE 161
|
170 180 190
....*....|....*....|....*....|
gi 568961968 1036 QslkdleyeleAKSHLKDDRSRLIKQMEDK 1065
Cdd:PRK12704 162 K----------VEEEARHEAAVLIKEIEEE 181
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
714-1251 |
2.15e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.50 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 714 KRSEDREKGALIEELLQAKQDLQ------DLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKlkeQYDAELQA 787
Cdd:pfam05483 104 KENKLQENRKIIEAQRKAIQELQfenekvSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTK---KYEYEREE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 788 LRESVEEATKNVE--VLASRSNSSEQSQAEADLREKvLKEENEKLQ-------GRIAELERRAAQLQRQMEDVKGDEAQA 858
Cdd:pfam05483 181 TRQVYMDLNNNIEkmILAFEELRVQAENARLEMHFK-LKEDHEKIQhleeeykKEINDKEKQVSLLLIQITEKENKMKDL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 859 KETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKnEMESE 938
Cdd:pfam05483 260 TFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK-EAQME 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 939 RWHLDKTIEKLqkeMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKArlaaSKMQDELRLKEEELQ 1018
Cdd:pfam05483 339 ELNKAKAAHSF---VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEM----TKFKNNKEVELEELK 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1019 DYQRAEEEALTKRQLLEQslkdLEYELEAKshlKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSEritwsreQMEQMR 1098
Cdd:pfam05483 412 KILAEDEKLLDEKKQFEK----IAEELKGK---EQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK-------EVEDLK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1099 SELLQEKAAKQDL--ECDKISLErqNKDLKSRIIHLEGSYRSSKEGlVVQMEARIAELEDRLENEERDRANLQlsnRRLE 1176
Cdd:pfam05483 478 TELEKEKLKNIELtaHCDKLLLE--NKELTQEASDMTLELKKHQED-IINCKKQEERMLKQIENLEEKEMNLR---DELE 551
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1177 RKVKELVMQVDDEHLSLtdqkDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKK 1251
Cdd:pfam05483 552 SVREEFIQKGDEVKCKL----DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKK 622
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
667-1048 |
2.26e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.44 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 667 RLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREK----------GALIEELLQAKQDLQ 736
Cdd:TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndieeqetllGTIMPEEESAKVCLT 789
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 737 DLLIAK---EEQEDLLRKRERELTALKGA-LKEEVSSHDQEMDKLKEQYD---AELQALRESVEEATKNVEVLASRSN-- 807
Cdd:TIGR00606 790 DVTIMErfqMELKDVERKIAQQAAKLQGSdLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNel 869
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 808 -SSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDvkgdEAQAKETLrkcesevQQLEEALVHARKEEKEA 886
Cdd:TIGR00606 870 kSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP----LETFLEKD-------QQEKEELISSKETSNKK 938
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 887 TcarralEKELEQARRELSQVSQEQKELLEKLRDEAE----QKE-QLRKLKNEMESERWHLDKTIEKLQKEMADIaEASR 961
Cdd:TIGR00606 939 A------QDKVNDIKEKVKNIHGYMKDIENKIQDGKDdylkQKEtELNTVNAQLEECEKHQEKINEDMRLMRQDI-DTQK 1011
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 962 TSSLELQKQLGEYKEKNrrELAEMQTQLKEKCLEVEKARLaaSKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDL 1041
Cdd:TIGR00606 1012 IQERWLQDNLTLRKREN--ELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087
|
....*..
gi 568961968 1042 EYELEAK 1048
Cdd:TIGR00606 1088 KKELREP 1094
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
663-960 |
2.31e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 55.32 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 663 TLQRRLEESEGELRKslEELFQVKMEREQHQTE-IRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIA 741
Cdd:PRK05771 13 TLKSYKDEVLEALHE--LGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 742 KEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK--EQYDAELQALRESveeatKNVEVLA---SRSNSSEQSQAEA 816
Cdd:PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLLGF-----KYVSVFVgtvPEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 817 DLREKVLKEENEK-------LQGRIAELERRAAQLQRQMEDVKgDEAQAKETLRKCESEVQQLEealvharKEEKEatca 889
Cdd:PRK05771 166 VENVEYISTDKGYvyvvvvvLKELSDEVEEELKKLGFERLELE-EEGTPSELIREIKEELEEIE-------KERES---- 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 890 rraLEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKlknemeSER------WHLDKTIEKLQKEMADIAEAS 960
Cdd:PRK05771 234 ---LLEELKELAKKYLEELLALYEYLEIELERAEALSKFLK------TDKtfaiegWVPEDRVKKLKELIDKATGGS 301
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
743-930 |
2.39e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.45 E-value: 2.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 743 EEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYD----------AELQALRESVEEATKNV----EVLASRSNS 808
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNelqaelealqAEIDKLQAEIAEAEAEIeerrEELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 809 SEQSQAEADLREKVLKEENeklqgrIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATC 888
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSES------FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568961968 889 ARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRK 930
Cdd:COG3883 169 AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
647-1093 |
4.56e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 4.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 647 LEELRVRHQSQVEETATL---QRRLEESEGELRKSLEELFQVKMEREQHQtEIRDLQDQLSEMHDELDSTKRSEDREKga 723
Cdd:COG3096 787 LEELRAERDELAEQYAKAsfdVQKLQRLHQAFSQFVGGHLAVAFAPDPEA-ELAALRQRRSELERELAQHRAQEQQLR-- 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 724 liEELLQAKQDLQDL--------LIAKEEQEDLLRKRERELTALKGAlKEEVSSHDQEMDKLKEQYDAeLQALRESVEEA 795
Cdd:COG3096 864 --QQLDQLKEQLQLLnkllpqanLLADETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVAV-LQSDPEQFEQL 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 796 TKNVEVLASRSNSSEQsQAEA--DLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQle 873
Cdd:COG3096 940 QADYLQAKEQQRRLKQ-QIFAlsEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQ-- 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 874 ealvharkeekeATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRK--LKNEM---------------- 935
Cdd:COG3096 1017 ------------YNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRdeLHEELsqnrsrrsqlekqltr 1084
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 936 -ESERWHLDKTIEKLQKEMADI------AEASRTSSLELQKQLGEYKEKNRRELAEMqtqlkekclEVEKARLAASKMQD 1008
Cdd:COG3096 1085 cEAEMDSLQKRLRKAERDYKQEreqvvqAKAGWCAVLRLARDNDVERRLHRRELAYL---------SADELRSMSDKALG 1155
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1009 ELRLK---EEELQDYQRAEEEAltkrqllEQSLKDLEYELEAKSHLK----------DDRSRLIKQMEDKVSQLEIELEE 1075
Cdd:COG3096 1156 ALRLAvadNEHLRDALRLSEDP-------RRPERKVQFYIAVYQHLRerirqdiirtDDPVEAIEQMEIELARLTEELTS 1228
|
490 500
....*....|....*....|....
gi 568961968 1076 ERTNADLLSE------RITWSREQ 1093
Cdd:COG3096 1229 REQKLAISSEsvaniiRKTIQREQ 1252
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
595-937 |
6.13e-07 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 53.88 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 595 SNQAPNSPSEGNSLLDQKNKLILEVSEL-----QQQLQLEMKNQQNIKEERERMREDLEElRVRHQSQveETATLQRRLE 669
Cdd:pfam05667 195 TAQPSSRASVVPSLLERNAAELAAAQEWeeewnSQGLASRLTPEEYRKRKRTKLLKRIAE-QLRSAAL--AGTEATSGAS 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 670 ESEGELRKSLEELfqvkmereqhqteirdlqDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLqdlLIAKEEQEDLL 749
Cdd:pfam05667 272 RSAQDLAELLSSF------------------SGSSTTDTGLTKGSRFTHTEKLQFTNEAPAATSSP---PTKVETEEELQ 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 750 RKRERELTALKG---ALKEEVSSHDQEMDKLK---EQYDAELQALRESVEEATKNVEVlasrsnsseqsqaeadlREKVL 823
Cdd:pfam05667 331 QQREEELEELQEqleDLESSIQELEKEIKKLEssiKQVEEELEELKEQNEELEKQYKV-----------------KKKTL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 824 K-----EEN-EKLQGRIAELERRAAQLQRQMEDVKGdeaqaketlrkcesevqqleeALVHARKEEKEAtCARRALEkel 897
Cdd:pfam05667 394 DllpdaEENiAKLQALVDASAQRLVELAGQWEKHRV---------------------PLIEEYRALKEA-KSNKEDE--- 448
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568961968 898 eqARRELSQVsQEQKELLEKLRDEAEQKEQLRK-LKNEMES 937
Cdd:pfam05667 449 --SQRKLEEI-KELREKIKEVAEEAKQKEELYKqLVAEYER 486
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
851-1005 |
6.32e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 53.63 E-value: 6.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 851 VKGDEAQAKETLRKCESEVQQL-EEALVHARKEEKEAtcaRRALEKELEQARRELSQVSQ----------EQKELLEKLR 919
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIkKEALLEAKEEIHKL---RNEFEKELRERRNELQKLEKrllqkeenldRKLELLEKRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 920 DEAEQKEQ-LRKLKNEMESERWHLDKTIEKLQKEMADIAEASRtsslELQKQ--LGEYKEKNRRELAEMqtqLKEKcleV 996
Cdd:PRK12704 110 EELEKKEKeLEQKQQELEKKEEELEELIEEQLQELERISGLTA----EEAKEilLEKVEEEARHEAAVL---IKEI---E 179
|
....*....
gi 568961968 997 EKARLAASK 1005
Cdd:PRK12704 180 EEAKEEADK 188
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
568-1063 |
6.38e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 6.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 568 DATKRKVNLVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDL 647
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKII 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 648 EELRVRHQSQVEETATLQRRLE-------------ESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEM---HDELD 711
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYKNDIEnkkqilsnidaeiNKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELegyEMDYN 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 712 STKRSEDREKgALIEELLQAKQDLQDlliakeEQEDLLRKRERELTALKgALKEEVSSHDQEMDKLKEQYDAELQALRES 791
Cdd:PRK01156 367 SYLKSIESLK-KKIEEYSKNIERMSA------FISEILKIQEIDPDAIK-KELNEINVKLQDISSKVSSLNQRIRALREN 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 792 VEEATKNVEVLASRS-----NSSEQSQAEADLREKvLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQ-AKETLRKC 865
Cdd:PRK01156 439 LDELSRNMEMLNGQSvcpvcGTTLGEEKSNHIINH-YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYlESEEINKS 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 866 ESEVQQLEEALVHARK-EEKEATCARRALEKE-------------LEQARRE----LSQVSQEQKELLEKLRDEAEQK-E 926
Cdd:PRK01156 518 INEYNKIESARADLEDiKIKINELKDKHDKYEeiknrykslkledLDSKRTSwlnaLAVISLIDIETNRSRSNEIKKQlN 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 927 QLRKLKNEMESERWHLDKTIEKLQKEMADIAeasrtSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKM 1006
Cdd:PRK01156 598 DLESRLQEIEIGFPDDKSYIDKSIREIENEA-----NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI 672
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 1007 QDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQME 1063
Cdd:PRK01156 673 TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
782-992 |
6.48e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.30 E-value: 6.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 782 DAELQALRESVEEATKNVEVLASRSNSSeQSQAEAdlrekvLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKET 861
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDAL-QAELEE------LNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 LRKCESEVQQ------LEEALVHArKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEM 935
Cdd:COG3883 88 LGERARALYRsggsvsYLDVLLGS-ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 936 ESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEK 992
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
726-936 |
8.09e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 8.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 726 EELLQAKQDLQDLLiakEEQEDLLRKRERELTALK-----GALKEEVSSHDQEMDKLKEQY---DAELQALRESVEEATK 797
Cdd:COG3206 171 EEARKALEFLEEQL---PELRKELEEAEAALEEFRqknglVDLSEEAKLLLQQLSELESQLaeaRAELAEAEARLAALRA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 798 NVEVLASRSNSSEQSQAEADLREKVLKeenekLQGRIAELERR-------AAQLQRQMEDVKGD-EAQAKETLRKCESEV 869
Cdd:COG3206 248 QLGSGPDALPELLQSPVIQQLRAQLAE-----LEAELAELSARytpnhpdVIALRAQIAALRAQlQQEAQRILASLEAEL 322
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 870 QQLEEALvharkeekeatcarRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEME 936
Cdd:COG3206 323 EALQARE--------------ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
606-1065 |
1.18e-06 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 52.77 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 606 NSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELR----------VRH---QSQVEETATLQRRLEESE 672
Cdd:pfam05622 3 SEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLEsgddsgtpggKKYlllQKQLEQLQEENFRLETAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 673 GELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKG--ALIEELLQAKQDLQDL------------ 738
Cdd:pfam05622 83 DDYRIKCEELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESSDKVKKleATVETYKKKLEDLGDLrrqvklleerna 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 739 --LIAKEEQEDLLRKR----------ERELTALKGALKEEVSSHDQ---EMDKLKEQYDA----------ELQALRESVE 793
Cdd:pfam05622 163 eyMQRTLQLEEELKKAnalrgqletyKRQVQELHGKLSEESKKADKlefEYKKLEEKLEAlqkekerliiERDTLRETNE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 794 EatknveVLASRSNSSEQSQAEADLREKVLKEENekLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 873
Cdd:pfam05622 243 E------LRCAQLQQAELSQADALLSPSSDPGDN--LAAEIMPAEIREKLIRLQHENKMLRLGQEGSYRERLTELQQLLE 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 874 EAlvHARKEEkeatcarraLEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEM 953
Cdd:pfam05622 315 DA--NRRKNE---------LETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKK 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 954 ADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARlaaskmqDELRLKEEELQDYQRAEEEALtKRQL 1033
Cdd:pfam05622 384 EQIEELEPKQDSNLAQKIDELQEALRKKDEDMKAMEERYKKYVEKAK-------SVIKTLDPKQNPASPPEIQAL-KNQL 455
|
490 500 510
....*....|....*....|....*....|....
gi 568961968 1034 LEQ--SLKDLEYELEAkshlkddrSRLIKQMEDK 1065
Cdd:pfam05622 456 LEKdkKIEHLERDFEK--------SKLQREQEEK 481
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
730-1036 |
1.37e-06 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 53.07 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 730 QAKQDLQDLL--IAKEEQEDLLRKRERELTALKGALKE--EVSSHDQEMDKLKEQYDAELQA-LRESVEEATKNVEVLAS 804
Cdd:pfam13779 463 EALDEVADLLweLALRIEDGDLSDAERRLRAAQERLSEalERGASDEEIAKLMQELREALDDyMQALAEQAQQNPQDLQQ 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 805 RSNSSEQSQAEADLrekvlkeenEKLQGRIAELERRaaqlqrqmedvkGDEAQAKETLrkceSEVQQLEEALVHARKEEk 884
Cdd:pfam13779 543 PDDPNAQEMTQQDL---------QRMLDRIEELARS------------GRRAEAQQML----SQLQQMLENLQAGQPQQ- 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 885 eatcARRALEKELEQARRELSQVSQEQkellEKLRDEAEQK-EQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTS 963
Cdd:pfam13779 597 ----QQQQGQSEMQQAMDELGDLLREQ----QQLLDETFRQlQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQG 668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 964 SLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARL--AASKMQD-ELRLKEEELQDYQRAEEEAL-----TKRQLLE 1035
Cdd:pfam13779 669 GAEALGDLAERQQALRRRLEELQDELKELGGKEPGQALgdAGRAMRDaEEALGQGDLAGAVDAQGRALealrkGAQQLAE 748
|
.
gi 568961968 1036 Q 1036
Cdd:pfam13779 749 A 749
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
610-816 |
1.41e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 610 DQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQ--VKM 687
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraRAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDL---QDQLSEMHDELDSTKRSEDREKgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALK 764
Cdd:COG3883 96 YRSGGSVSYLDVllgSESFSDFLDRLSALSKIADADA-DLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568961968 765 EEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEA 816
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAA 226
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
671-1254 |
1.48e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.13 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 671 SEG-ELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHD-ELDSTKRSEDREKGALIEELLQAKQDL----QDLLIAKEE 744
Cdd:TIGR00606 166 SEGkALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEhQMELKYLKQYKEKACEIRDQITSKEAQlessREIVKSYEN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 745 QEDLLRKRERELTALKGALKE------EVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRS-NSSEQSQAEAD 817
Cdd:TIGR00606 246 ELDPLKNRLKEIEHNLSKIMKldneikALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTvREKERELVDCQ 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 818 LREKVLKEENEKLQGRIAELERRAAQLQRQmEDVKGDEAQAKETLR---KCESEVQQLEEALVHARKEEKEATCARRALE 894
Cdd:TIGR00606 326 RELEKLNKERRLLNQEKTELLVEQGRLQLQ-ADRHQEHIRARDSLIqslATRLELDGFERGPFSERQIKNFHTLVIERQE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 895 KELEQARRELSQVSQEQ---KELLEKLRDEAEQKEQLRKLKNE-MESERWHLDKTIEKLQKemadiAEASRTSSLELQKQ 970
Cdd:TIGR00606 405 DEAKTAAQLCADLQSKErlkQEQADEIRDEKKGLGRTIELKKEiLEKKQEELKFVIKELQQ-----LEGSSDRILELDQE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 971 LgeykEKNRRELAEMQTQLKEKCLEVEKARLAASKMqDELRLKEEELQDYQRAEEEALTKRQLLEQSLKdleyeleaksh 1050
Cdd:TIGR00606 480 L----RKAERELSKAEKNSLTETLKKEVKSLQNEKA-DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD----------- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1051 lKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRII 1130
Cdd:TIGR00606 544 -KMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLS 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1131 HLEGSYRSSKEGlvVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQ------VDDEHLSLTDQKDQLSLRL 1204
Cdd:TIGR00606 623 SYEDKLFDVCGS--QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEnqsccpVCQRVFQTEAELQEFISDL 700
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 568961968 1205 KAMKRQveeAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLR 1254
Cdd:TIGR00606 701 QSKLRL---APDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIP 747
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1059-1256 |
2.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1059 IKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSEllQEKAAK-QDLECDKISLE-----RQNKDLKSRIIHL 1132
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE--REKAERyQALLKEKREYEgyellKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1133 EGSyRSSKEGLVVQMEARIAELEDRLENEERDRANLqlsNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVE 1212
Cdd:TIGR02169 243 ERQ-LASLEEELEKLTEEISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE 318
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568961968 1213 EAEE-------EIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGLRLK 1256
Cdd:TIGR02169 319 DAEErlakleaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1001-1235 |
2.53e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1001 LAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNA 1080
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1081 DLLSERItwsrEQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLEN 1160
Cdd:COG4942 93 AELRAEL----EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1161 EERDRANLQLSNRRLERKVKELVMQVDDEhlslTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQ 1235
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAER----QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
647-800 |
2.65e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.92 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 647 LEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREkgAL-- 724
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYE--ALqk 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 725 -IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVE 800
Cdd:COG1579 97 eIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
790-952 |
2.95e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 51.78 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 790 ESVEEATKNV--EVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQmedvkgdeaqaketLRKCES 867
Cdd:COG2433 376 LSIEEALEELieKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAE--------------LEEKDE 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 868 EVQQLEEALVHARKEEKEATCARR---ALEKELEQARRELSQVSQEQKELleklrdeaeqKEQLRKLKN--EMESERWHL 942
Cdd:COG2433 442 RIERLERELSEARSEERREIRKDReisRLDREIERLERELEEERERIEEL----------KRKLERLKElwKLEHSGELV 511
|
170
....*....|.
gi 568961968 943 D-KTIEKLQKE 952
Cdd:COG2433 512 PvKVVEKFTKE 522
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
639-861 |
3.46e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 639 ERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSED 718
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 719 REKGAL--IEELLQAKqDLQDLLiakeEQEDLLRKrereltalkgalkeeVSSHDQEM----DKLKEQYDAELQALRESV 792
Cdd:COG3883 97 RSGGSVsyLDVLLGSE-SFSDFL----DRLSALSK---------------IADADADLleelKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 793 EEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKET 861
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
862-1234 |
3.61e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.88 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 LRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQV-----SQEQ----KELLEKLRDEAEQKEQLRKLK 932
Cdd:PRK04863 295 LYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVqtalrQQEKieryQADLEELEERLEEQNEVVEEA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 933 NEmeserwhldktieklQKEMADI-AEASRTSSLELQKQLGEYKEKnrreLAEMQT---QLKEKCLEVEKARLAASKMQD 1008
Cdd:PRK04863 375 DE---------------QQEENEArAEAAEEEVDELKSQLADYQQA----LDVQQTraiQYQQAVQALERAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1009 ELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLE---------YELEAKshLKDDRSRliKQMEDKVSQLEIELEEERTN 1079
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQaahsqfeqaYQLVRK--IAGEVSR--SEAWDVARELLRRLREQRHL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 AdllseritwsrEQMEQMRSELlqeKAAKQDLECDKiSLERQNKDLKSRIIhLEGSYRSSKEGLVVQMEARIAELEDRLE 1159
Cdd:PRK04863 512 A-----------EQLQQLRMRL---SELEQRLRQQQ-RAERLLAEFCKRLG-KNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1160 NEERDRANLQLSNRRLERKVKEL-----VMQVDDEHLS-LTDQ-------KDQLSLRLKAMKRQVEEAEEEIDRLESSKK 1226
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLaarapAWLAAQDALArLREQsgeefedSQDVTEYMQQLLERERELTVERDELAARKQ 655
|
....*...
gi 568961968 1227 KLQRELEE 1234
Cdd:PRK04863 656 ALDEEIER 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
564-807 |
3.65e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 564 TDNEDATKRKVNLVFEKIQTLKSRAAgsaQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERM 643
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELA---ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 644 REDLEELRVRHQSQVeetATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDstkrsedrEKGA 723
Cdd:COG4942 96 RAELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA--------ELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 724 LIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaELQALRESVEEATKNVEVLA 803
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-ELEALIARLEAEAAAAAERT 243
|
....
gi 568961968 804 SRSN 807
Cdd:COG4942 244 PAAG 247
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
688-913 |
3.94e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 688 EREQHQTEIRDLQDQLSEMHDELDSTkrseDREKGALIEELLQAKQDLQDLliaKEEQEDLlrkrERELTALKgalkeev 767
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDAL----QAELEELNEEYNELQAELEAL---QAEIDKL----QAEIAEAE------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 sshdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEAdlREKVL---KEENEKLQGRIAELERRAAQL 844
Cdd:COG3883 79 ----AEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSA--LSKIAdadADLLEELKADKAELEAKKAEL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 845 QRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKE 913
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
603-1120 |
4.34e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 51.62 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 603 SEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEElrvrhQSQVEETATLQRRLEESEGELrksleel 682
Cdd:COG5022 892 KSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLN-----NIDLEEGPSIEYVKLPELNKL------- 959
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 683 fqvkmereqhQTEIRDLQDQLSEMHDELDSTKRSEDREKGAlIEELLQAKQDLQDLLIAKE---EQEDLLRKRERELTAL 759
Cdd:COG5022 960 ----------HEVESKLKETSEEYEDLLKKSTILVREGNKA-NSELKNFKKELAELSKQYGalqESTKQLKELPVEVAEL 1028
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 760 KGALKEEVSSHD-----QEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLrEKVLKEENEKLQGRI 834
Cdd:COG5022 1029 QSASKIISSESTelsilKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENL-LKTINVKDLEVTNRN 1107
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 835 AELERRAAQLQRQMEDVKGDEAQAKETLRK----CESEVQQLEEALV-------HARKEEKEATCARRALEKELEQARRE 903
Cdd:COG5022 1108 LVKPANVLQFIVAQMIKLNLLQEISKFLSQlvntLEPVFQKLSVLQLeldglfwEANLEALPSPPPFAALSEKRLYQSAL 1187
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 904 LSQVSQEQKELLEKLRDEAEQKEQLrklknemESERWHLDKTIEKLQKEMADIAE------ASRTSSLELQKQLGEYKEK 977
Cdd:COG5022 1188 YDEKSKLSSSEVNDLKNELIALFSK-------IFSGWPRGDKLKKLISEGWVPTEystslkGFNNLNKKFDTPASMSNEK 1260
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 978 NRRELAEMQTQLKEKCLEVEKARLAASKMQ--------DELRLKE---------------EELQDYQRAEE--EALTKRQ 1032
Cdd:COG5022 1261 LLSLLNSIDNLLSSYKLEEEVLPATINSLLqyinvglfNALRTKAsslrwksatevnynsEELDDWCREFEisDVDEELE 1340
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1033 LLEQSLKDLEYELEAKSHLKDDRS--RLIKQME-------DKVSQLEIELEEErTNADLLSERITWSRE-------QMEQ 1096
Cdd:COG5022 1341 ELIQAVKVLQLLKDDLNKLDELLDacYSLNPAEiqnlksrYDPADKENNLPKE-ILKKIEALLIKQELQlslegkdETEV 1419
|
570 580
....*....|....*....|....
gi 568961968 1097 MRSELLQEKAAKQDLECDKISLER 1120
Cdd:COG5022 1420 HLSEIFSEEKSLISLDRNSIYKEE 1443
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
824-1259 |
4.46e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 4.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 824 KEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLrkcESEVQQLEEALVHAR------KEEKEATCARRALEKEL 897
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL---EKELKHLREALQQTQqshaylTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 898 EQARRELSQVSQEQKEL--LEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYK 975
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLeeTQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 976 EKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRlkeEELQDYQRAEEEALTKRQLLEQSLKDL-------EYELEAK 1048
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT---QHIHTLQQQKTTLTQKLQSLCKELDILqreqatiDTRTSAF 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1049 SHLKDDRSRLIKQME---DKVSQLEIELEEERTNADL-------LSERITWSREQMEQMRSELLQEKAAKQDLECDKISL 1118
Cdd:TIGR00618 420 RDLQGQLAHAKKQQElqqRYAELCAAAITCTAQCEKLekihlqeSAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1119 ERQNKDLKSRIIHLEGSYRSS--KEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERkVKELVMQVDDEHLSLTDQ 1196
Cdd:TIGR00618 500 QEEPCPLCGSCIHPNPARQDIdnPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS-LKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 1197 KDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMgvnEQLQGQLNSLKKGLRLKTLS 1259
Cdd:TIGR00618 579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL---RKLQPEQDLQDVRLHLQQCS 638
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
743-920 |
6.15e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 6.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 743 EEQEDLLR-----KRERELTALKGALKEEVSSHDQEMDKLKEQYDA---ELQALRESVEEATKNVEVLASRSNSSEQSQA 814
Cdd:COG1579 4 EDLRALLDlqeldSELDRLEHRLKELPAELAELEDELAALEARLEAaktELEDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 815 EA-DLRE-KVLKEENEKLQGRIAELERRAAQLQRQMEdvkgdeaQAKETLRKCESEVQQLEEALVHARKEEKEATCARRA 892
Cdd:COG1579 84 NVrNNKEyEALQKEIESLKRRISDLEDEILELMERIE-------ELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
170 180
....*....|....*....|....*....
gi 568961968 893 LEKELEQARREL-SQVSQEQKELLEKLRD 920
Cdd:COG1579 157 ELEELEAEREELaAKIPPELLALYERIRK 185
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
634-944 |
6.68e-06 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 50.24 E-value: 6.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 634 QNIKEERERMREDLEELRVRHQSQVEETATLQRRLEEsegeLRKSLEElfqvkmEREQHQTEIRDLQDQLSEMHDELDS- 712
Cdd:pfam06160 96 DDIEEDIKQILEELDELLESEEKNREEVEELKDKYRE----LRKTLLA------NRFSYGPAIDELEKQLAEIEEEFSQf 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 713 TKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRE----RELTALKGALKEEVSSH--------DQEMDKLKEQ 780
Cdd:pfam06160 166 EELTESGDYLEAREVLEKLEEETDALEELMEDIPPLYEELKtelpDQLEELKEGYREMEEEGyalehlnvDKEIQQLEEQ 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 781 YDAELQALRE-SVEEATKNVEVLASRSNSS-EQSQAEADLREKVLKEENEkLQGRIAELERRAAQLQRQMEDVK------ 852
Cdd:pfam06160 246 LEENLALLENlELDEAEEALEEIEERIDQLyDLLEKEVDAKKYVEKNLPE-IEDYLEHAEEQNKELKEELERVQqsytln 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 853 GDEAqakETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLR----DEAEQKEQL 928
Cdd:pfam06160 325 ENEL---ERVRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQslrkDELEAREKL 401
|
330
....*....|....*.
gi 568961968 929 RKLKNEMESERWHLDK 944
Cdd:pfam06160 402 DEFKLELREIKRLVEK 417
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
578-927 |
7.68e-06 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 49.42 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 578 FEKIQTLKSRAAGSaqgsNQAPNSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERmredleelrvrhqSQ 657
Cdd:pfam15905 23 FEKSQRFRKQKAAE----SQPNLNNSKDASTPATARKVKSLELKKKSQKNLKESKDQKELEKEIR-------------AL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 658 VEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMhdeldstKRSEdrekgalieELLQAKQdlqd 737
Cdd:pfam15905 86 VQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLEL-------TRVN---------ELLKAKF---- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 738 lliakeeQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEAd 817
Cdd:pfam15905 146 -------SEDGTQKKMSSLSMELMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEE- 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 818 lrekvlKEENEKLQGRIAELerraAQLQRQMEDVKGDEAQAKETLRKCESEV----QQLEEALVHARKEEKEATCARRAL 893
Cdd:pfam15905 218 ------KSETEKLLEYITEL----SCVSEQVEKYKLDIAQLEELLKEKNDEIeslkQSLEEKEQELSKQIKDLNEKCKLL 287
|
330 340 350
....*....|....*....|....*....|....
gi 568961968 894 EKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ 927
Cdd:pfam15905 288 ESEKEELLREYEEKEQTLNAELEELKEKLTLEEQ 321
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
864-1233 |
8.26e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.22 E-value: 8.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 864 KCESEVQQLEEAL-----VHARKEEKEATCARRALEKELEQARRELsqvsQEQKELLEKLRDEAEQ-KEQLRKLKNEMES 937
Cdd:PRK04778 83 DIEEQLFEAEELNdkfrfRKAKHEINEIESLLDLIEEDIEQILEEL----QELLESEEKNREEVEQlKDLYRELRKSLLA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 938 ERWHLDKTIEKLQKEMADIaEASRTSSLELQKQlGEYKE-KNRRELAEMQTQLKEKCLEVEKARLAasKMQDELRLKEEE 1016
Cdd:PRK04778 159 NRFSFGPALDELEKQLENL-EEEFSQFVELTES-GDYVEaREILDQLEEELAALEQIMEEIPELLK--ELQTELPDQLQE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1017 LQDyqraeeealTKRQLLEQSL----KDLEYELEAkshLKDDRSRLIKQMEdkvsqlEIELEEERTNADLLSERItwsre 1092
Cdd:PRK04778 235 LKA---------GYRELVEEGYhldhLDIEKEIQD---LKEQIDENLALLE------ELDLDEAEEKNEEIQERI----- 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1093 qmEQMRSELLQEKAAKQDLE--CDKIS-----LERQNKDLKSRIIHLEGSYR-SSKEGLVV-QMEARIAELEDRLENEER 1163
Cdd:PRK04778 292 --DQLYDILEREVKARKYVEknSDTLPdflehAKEQNKELKEEIDRVKQSYTlNESELESVrQLEKQLESLEKQYDEITE 369
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1164 DRANLQLSNRRLERKVKELVMQVDDehlsLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELE 1233
Cdd:PRK04778 370 RIAEQEIAYSELQEELEEILKQLEE----IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
619-1253 |
8.39e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.21 E-value: 8.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQnikeerermredlEELRV-RHQSQV--EETATLQRRLEESEGELRKSLEELFQVKMEREQHQTE 695
Cdd:pfam10174 65 TQEENQHLQLTIQALQ-------------DELRAqRDLNQLlqQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKE 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 696 IRDLQDQLSEMHDELDSTK-----RSEDREKgalIEELLQAKQdlqdlLIAKEEQEDLLRKREreltalkgalKEEVSSH 770
Cdd:pfam10174 132 LFLLRKTLEEMELRIETQKqtlgaRDESIKK---LLEMLQSKG-----LPKKSGEEDWERTRR----------IAEAEMQ 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 771 DQEMDKLKEQYDAELQALRESVEeatknvevlasRSNSSEQSQAEADLREKVLKEENEKlqgrIAELERRAAQLQRQMED 850
Cdd:pfam10174 194 LGHLEVLLDQKEKENIHLREELH-----------RRNQLQPDPAKTKALQTVIEMKDTK----ISSLERNIRDLEDEVQM 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 851 VKGDEAQAKEtlrKCESEVQQLEEALVHARKEEKEATCARRALEK---ELEQARRELSQVSQEQ---KELLEKLRDEAEQ 924
Cdd:pfam10174 259 LKTNGLLHTE---DREEEIKQMEVYKSHSKFMKNKIDQLKQELSKkesELLALQTKLETLTNQNsdcKQHIEVLKESLTA 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 925 KEQLRK-LKNEMESERWHLDK---TIEKLQKEMADIAEASRTSSLELQ--KQLGEYKEKN----RRELAEMQTQLKEKcl 994
Cdd:pfam10174 336 KEQRAAiLQTEVDALRLRLEEkesFLNKKTKQLQDLTEEKSTLAGEIRdlKDMLDVKERKinvlQKKIENLQEQLRDK-- 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 995 evekarlaaSKMQDELRLKEEELQDYQRAEEEALTKrqlLEQSLKDLEYELEA--KSHLKDDRSRL---------IKQME 1063
Cdd:pfam10174 414 ---------DKQLAGLKERVKSLQTDSSNTDTALTT---LEEALSEKERIIERlkEQREREDRERLeeleslkkeNKDLK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1064 DKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQ-------------NKDLKSRII 1130
Cdd:pfam10174 482 EKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQlkkahnaeeavrtNPEINDRIR 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1131 HLEGSYRSSKEglvvqmEARIAELE-DRLENEERDRANLQLSNrrlERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKR 1209
Cdd:pfam10174 562 LLEQEVARYKE------ESGKAQAEvERLLGILREVENEKNDK---DKKIAELESLTLRQMKEQNKKVANIKHGQQEMKK 632
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 568961968 1210 QVEEAEEEIDRLESSKKK--LQRELEEQMGVNEQLQGQLNSLKKGL 1253
Cdd:pfam10174 633 KGAQLLEEARRREDNLADnsQQLQLEELMGALEKTRQELDATKARL 678
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
752-1133 |
8.64e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.89 E-value: 8.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 752 RER-ELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEEnekl 830
Cdd:pfam07888 41 QERaELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEE---- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 831 qgRIAELERRAAQLQRQMEdVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQE 910
Cdd:pfam07888 117 --KDALLAQRAAHEARIRE-LEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 911 QKELLEKLRDEAEQKEQLRKLKNEMEserwhlDKTIEKLQKEMADIAEASRTSSLELQKQLGEYK-EKNRRELAEMQTQL 989
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLT------QKLTTAHRKEAENEALLEELRSLQERLNASERKvEGLGEELSSMAAQR 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 990 KEKCLEVEKARLAASKMQdeLRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVsQL 1069
Cdd:pfam07888 268 DRTQAELHQARLQAAQLT--LQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMERE-KL 344
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961968 1070 EIELEEERTNadllseritwSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLE 1133
Cdd:pfam07888 345 EVELGREKDC----------NRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLE 398
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
490-932 |
8.82e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 490 EEEIKIATATLMLQNRAVAATSDSGAKKISVKTF---PSDSSTQATPDLLKGQQELTQqtNEETAKQILYNYLKEGGTDN 566
Cdd:pfam05483 316 EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFvvtEFEATTCSLEELLRTEQQRLE--KNEDQLKIITMELQKKSSEL 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 567 EDATKRKVN---------LVFEKIQTLKSRAAGSAQGSNQAPNSPSEGNSLLDQKNKlilEVSELQQQLQLEMKNQQNIK 637
Cdd:pfam05483 394 EEMTKFKNNkeveleelkKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREK---EIHDLEIQLTAIKTSEEHYL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 638 EERERMREDLE-------ELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDEL 710
Cdd:pfam05483 471 KEVEDLKTELEkeklkniELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 711 DSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALK-----------------GALKEEVSSHDQE 773
Cdd:pfam05483 551 ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKkqienknknieelhqenKALKKKGSAENKQ 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 774 MDKLK---EQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRI-AELERRAAQLQRQME 849
Cdd:pfam05483 631 LNAYEikvNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIdKRCQHKIAEMVALME 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 850 DVKgdeaqaketlRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQE---QKELLEKLRDEAEQKE 926
Cdd:pfam05483 711 KHK----------HQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQleiEKEEKEKLKMEAKENT 780
|
....*.
gi 568961968 927 QLRKLK 932
Cdd:pfam05483 781 AILKDK 786
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1153-1255 |
9.90e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.86 E-value: 9.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1153 ELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDehLSLT-DQKDQ----LSLRLKAMKRQVEE---AEEEIDRLESS 1224
Cdd:COG2433 396 EAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEE--LEAElEEKDErierLERELSEARSEERReirKDREISRLDRE 473
|
90 100 110
....*....|....*....|....*....|.
gi 568961968 1225 KKKLQRELEEQMGVNEQLQGQLNSLKKGLRL 1255
Cdd:COG2433 474 IERLERELEEERERIEELKRKLERLKELWKL 504
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
825-1175 |
1.20e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 49.30 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 825 EENEKLQGRIAELERRAaqlqrqmEDVKGDEAQAKETLRKCESEVQQLEEAlvHARKEEKEA-----TCARRALEKELEQ 899
Cdd:pfam19220 3 QRNELLRVRLGEMADRL-------EDLRSLKADFSQLIEPIEAILRELPQA--KSRLLELEAllaqeRAAYGKLRRELAG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 900 ARRELSQVSQEQKELLEKLRDEAEQkeqLRKLKNEMESERwhldktieklqkemadIAEASRTSSLE-LQKQLGEYKEkN 978
Cdd:pfam19220 74 LTRRLSAAEGELEELVARLAKLEAA---LREAEAAKEELR----------------IELRDKTAQAEaLERQLAAETE-Q 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 979 RRELAEMQTQLKEKCLEVEKARLAASKMQDELR----LKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDD 1054
Cdd:pfam19220 134 NRALEEENKALREEAQAAEKALQRAEGELATARerlaLLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRA 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1055 -----------RSRLIKQMEDKVSQLEIEL------------------------------------EEERTNADLLSERI 1087
Cdd:pfam19220 214 legqlaaeqaeRERAEAQLEEAVEAHRAERaslrmklealtaraaateqllaearnqlrdrdeairAAERRLKEASIERD 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1088 TWSREqMEQMRSELLQEKAAKQDLECDKISLERQ----NKDLKSRIIHLEGSyrsskEGLVVQMEARIAELEDRLENeer 1163
Cdd:pfam19220 294 TLERR-LAGLEADLERRTQQFQEMQRARAELEERaemlTKALAAKDAALERA-----EERIASLSDRIAELTKRFEV--- 364
|
410
....*....|..
gi 568961968 1164 DRANLQLSNRRL 1175
Cdd:pfam19220 365 ERAALEQANRRL 376
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
854-1223 |
1.21e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 854 DEAQAKETLRKCESEVQQLEEALV---HARKEEKEATC---------ARRALeKELEQARRELSQVSQEQKELLEKLRDE 921
Cdd:COG5022 833 RETEEVEFSLKAEVLIQKFGRSLKakkRFSLLKKETIYlqsaqrvelAERQL-QELKIDVKSISSLKLVNLELESEIIEL 911
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMESErwhLDKTIEKLQKEmadiaeasRTSSLELQKQLGEYKEKNrrELAEMQTQLKEKCLEVEKARL 1001
Cdd:COG5022 912 KKSLSSDLIENLEFKTE---LIARLKKLLNN--------IDLEEGPSIEYVKLPELN--KLHEVESKLKETSEEYEDLLK 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1002 AASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEI-------ELE 1074
Cdd:COG5022 979 KSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLqklkgllLLE 1058
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1075 EERTNADLLseritwsreQMEQMRSELLQEKAAKQDLECDKISLERQN-KDLKSRIIHLEGSYR--------SSKEGLVV 1145
Cdd:COG5022 1059 NNQLQARYK---------ALKLRRENSLLDDKQLYQLESTENLLKTINvKDLEVTNRNLVKPANvlqfivaqMIKLNLLQ 1129
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1146 QMEARIAELEDRLENEERDRANLQLSNRRLERkVKELVMQVDDEHLSLTDQK-----DQLSLRLKAMKRQVEEAEEEIDR 1220
Cdd:COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLELDGLFW-EANLEALPSPPPFAALSEKrlyqsALYDEKSKLSSSEVNDLKNELIA 1208
|
...
gi 568961968 1221 LES 1223
Cdd:COG5022 1209 LFS 1211
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
903-1243 |
1.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 903 ELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMEserwHLDKTIEKLQKemadIAEASRTSSLELQKQLGEYKEKNR--- 979
Cdd:pfam17380 273 QLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKE----EKAREVERRRK----LEEAEKARQAEMDRQAAIYAEQERmam 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 980 -RELAEMQTQLKEKCLEVEKARlaaskmQDELRLKEEELQDYQRAEEEALTKRQLLEQslkdleyELEAKSHLK---DDR 1055
Cdd:pfam17380 345 eRERELERIRQEERKRELERIR------QEEIAMEISRMRELERLQMERQQKNERVRQ-------ELEAARKVKileEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1056 SRLIKQMEDKVSQLEIELEEERtnadllseritwsreqmeQMRSELLQEKAAKQDLECDKISLERQNKDLKSRiihlegs 1135
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEAR------------------QREVRRLEEERAREMERVRLEEQERQQQVERLR------- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1136 yrsskeglvvQMEARIAELEDRLENEERDRANLQLSNRRLERKvkelvmQVDDEHLSLTDQKDQLSLRLKAMK-RQVEEA 1214
Cdd:pfam17380 467 ----------QQEEERKRKKLELEKEKRDRKRAEEQRRKILEK------ELEERKQAMIEEERKRKLLEKEMEeRQKAIY 530
|
330 340
....*....|....*....|....*....
gi 568961968 1215 EEEIDRLESSKKKLQRELEEQMGVNEQLQ 1243
Cdd:pfam17380 531 EEERRREAEEERRKQQEMEERRRIQEQMR 559
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
898-1223 |
1.32e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.96 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 898 EQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEME---SERWHLDKTIEKLQKEMADIAEASRtssleLQKQLGEY 974
Cdd:PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAelnEAESDLEQDYQAASDHLNLVQTALR-----QQEKIERY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 975 KEknrrELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEE-------LQDYQRAEEEALTKRQLLEQSLKDLEyelEA 1047
Cdd:PRK04863 354 QA----DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEvdelksqLADYQQALDVQQTRAIQYQQAVQALE---RA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1048 KShLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMrsellqEKAAKqdLECdKISLERQNKDLKS 1127
Cdd:PRK04863 427 KQ-LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF------EQAYQ--LVR-KIAGEVSRSEAWD 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1128 RIIHLEGSYRSSK--EGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERK------VKELVMQVDDEHLSLTDQKDQ 1199
Cdd:PRK04863 497 VARELLRRLREQRhlAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNlddedeLEQLQEELEARLESLSESVSE 576
|
330 340
....*....|....*....|....
gi 568961968 1200 LSLRLKAMKRQVEEAEEEIDRLES 1223
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAA 600
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
892-1251 |
1.55e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.57 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 892 ALEKELEQARRELSQvsqEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQkemadiaeasrtssleLQKQL 971
Cdd:PRK04863 290 ELRRELYTSRRQLAA---EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALR----------------QQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 972 GEYKEknrrELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEE-------LQDYQRAEEEALTKRQLLEQSLKDLEye 1044
Cdd:PRK04863 351 ERYQA----DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEvdelksqLADYQQALDVQQTRAIQYQQAVQALE-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1045 lEAKShLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMrsellqEKAAKqdLECdKISLERQNKD 1124
Cdd:PRK04863 425 -RAKQ-LCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF------EQAYQ--LVR-KIAGEVSRSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1125 LKSRIIHLEGSYRSSK--EGLVVQMEARIAELEDRLENEERdranlqlSNRRLERKVKELVMQVDDEhlsltDQKDQLSl 1202
Cdd:PRK04863 494 AWDVARELLRRLREQRhlAEQLQQLRMRLSELEQRLRQQQR-------AERLLAEFCKRLGKNLDDE-----DELEQLQ- 560
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 568961968 1203 rlkamkrqvEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKK 1251
Cdd:PRK04863 561 ---------EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA 600
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
625-1257 |
1.59e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.69 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 625 QLQLEMKNQQNIKEERERMREdleelrvrhqsqveeTATLQRRLEESEGELRKSLEELFQVKMEreQHQTEIRDLQDQLS 704
Cdd:COG5022 823 QKTIKREKKLRETEEVEFSLK---------------AEVLIQKFGRSLKAKKRFSLLKKETIYL--QSAQRVELAERQLQ 885
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 705 EMHDELDSTKRSEDREKGaLIEELLQAKQDLQDLLIAKEEQedllrkRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 784
Cdd:COG5022 886 ELKIDVKSISSLKLVNLE-LESEIIELKKSLSSDLIENLEF------KTELIARLKKLLNNIDLEEGPSIEYVKLPELNK 958
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 785 LQALRESVEEATKNVEVLASRSNSSEqsqaeadlREkvLKEENEKLQGRIAELerraAQLQRQMEDVKGDEAQAKETLRK 864
Cdd:COG5022 959 LHEVESKLKETSEEYEDLLKKSTILV--------RE--GNKANSELKNFKKEL----AELSKQYGALQESTKQLKELPVE 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 865 CeSEVQQLEEALVHARKE---EKEATCARRALEKELEQARRELSQVSQeQKELLEKLRDEAEQKEQLRKLKNEMESERWH 941
Cdd:COG5022 1025 V-AELQSASKIISSESTElsiLKPLQKLKGLLLLENNQLQARYKALKL-RRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 942 LDKTIeKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASkMQDELRLKEEELQDYQ 1021
Cdd:COG5022 1103 VTNRN-LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEAN-LEALPSPPPFAALSEK 1180
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1022 RAEEEAL--TKRQLLEQSLKDLEYELEakSHLKDDRSRLIKQMEDKVSQLEIELEEErTNADL---LSERITWSREQMEQ 1096
Cdd:COG5022 1181 RLYQSALydEKSKLSSSEVNDLKNELI--ALFSKIFSGWPRGDKLKKLISEGWVPTE-YSTSLkgfNNLNKKFDTPASMS 1257
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1097 MRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHL------EGSYRSSKEGL--VVQMEARIAELEDRLENEERDRANL 1168
Cdd:COG5022 1258 NEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYInvglfnALRTKASSLRWksATEVNYNSEELDDWCREFEISDVDE 1337
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1169 QLSNRRLERKVKELVMQvDDEHLS--LTDQKDQLSLRLKAMKRQVEEAEEE-------IDRLESS--KKKLQRELEEQMG 1237
Cdd:COG5022 1338 ELEELIQAVKVLQLLKD-DLNKLDelLDACYSLNPAEIQNLKSRYDPADKEnnlpkeiLKKIEALliKQELQLSLEGKDE 1416
|
650 660
....*....|....*....|
gi 568961968 1238 VNEQLQGQLNSLKKGLRLKT 1257
Cdd:COG5022 1417 TEVHLSEIFSEEKSLISLDR 1436
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
618-928 |
1.65e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESE---GELRKSLEELfqvkmEREQHQT 694
Cdd:COG3096 355 DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraIQYQQAVQAL-----EKARALC 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 695 EIRDL-QDQLSEMHDELdstkrsEDREKgALIEELLQAKQDLQDLLIAKEEQE---DLLRK------RERELTALKGALK 764
Cdd:COG3096 430 GLPDLtPENAEDYLAAF------RAKEQ-QATEEVLELEQKLSVADAARRQFEkayELVCKiageveRSQAWQTARELLR 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 765 E--EVSSHDQEMDKLKEQYdAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAA 842
Cdd:COG3096 503 RyrSQQALAQRLQQLRAQL-AELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKgdeAQAKEtLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEA 922
Cdd:COG3096 582 ELRQQLEQLR---ARIKE-LAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALE 657
|
....*.
gi 568961968 923 EQKEQL 928
Cdd:COG3096 658 SQIERL 663
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
555-1262 |
2.01e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 555 LYNYL----KEGGTDN-EDATK-----RKVNLVFEKIQTLKSRAAGSaqgsnQAPNSPSEGNSLLD-------------- 610
Cdd:TIGR01612 676 LYNELssivKENAIDNtEDKAKlddlkSKIDKEYDKIQNMETATVEL-----HLSNIENKKNELLDiiveikkhihgein 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 -QKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATlqrRLEESEGELRKSLEELFQVKMER 689
Cdd:TIGR01612 751 kDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNI---KDEDAKQNYDKSKEYIKTISIKE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQTEIRDLQDQLSEMHDELDSTKRSEDREKgaliEELLQAKQDLQDLL--IAKEEQEDLLRKRERELTALKGALKEEV 767
Cdd:TIGR01612 828 DEIFKIINEMKFMKDDFLNKVDKFINFENNCK----EKIDSEHEQFAELTnkIKAEISDDKLNDYEKKFNDSKSLINEIN 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 768 SSHDQE---MDKLKE--QYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEK-LQGRIAELERRA 841
Cdd:TIGR01612 904 KSIEEEyqnINTLKKvdEYIKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNtLIDKINELDKAF 983
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 842 AQLQrqMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEAtcARRALEKELEQARRELSQVsqeqkelleklrdE 921
Cdd:TIGR01612 984 KDAS--LNDYEAKNNELIKYFNDLKANLGKNKENMLYHQFDEKEK--ATNDIEQKIEDANKNIPNI-------------E 1046
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKNEMESErwhLDKTIEKLQKEMADIAEASRTSSLELQKQLGEY------KEKN----------RRELAEM 985
Cdd:TIGR01612 1047 IAIHTSIYNIIDEIEKE---IGKNIELLNKEILEEAEINITNFNEIKEKLKHYnfddfgKEENikyadeinkiKDDIKNL 1123
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 986 QTQLKEKCLEVEKARLAASKMQDELRLKEEELQDyqrAEEEALTKRQL--LEQSLKDLEYELEAKSHLKDDRSRL---IK 1060
Cdd:TIGR01612 1124 DQKIDHHIKALEEIKKKSENYIDEIKAQINDLED---VADKAISNDDPeeIEKKIENIVTKIDKKKNIYDEIKKLlneIA 1200
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1061 QMEDKVSQLE----IELEEERTNADLLSERITWSREQMEQMRSELlqEKAAKQDLECDKISLERQNK-----DLKSRIIH 1131
Cdd:TIGR01612 1201 EIEKDKTSLEevkgINLSYGKNLGKLFLEKIDEEKKKSEHMIKAM--EAYIEDLDEIKEKSPEIENEmgiemDIKAEMET 1278
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1132 LEGSYRSSKEGLVVQME-----ARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLS-LRLK 1205
Cdd:TIGR01612 1279 FNISHDDDKDHHIISKKhdeniSDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNiLKLN 1358
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 1206 AMKRQVEEAEEEIDRLESSKKKLQRELEEqmgvNEQLqgqLNSLKKGLRLKTLSSKV 1262
Cdd:TIGR01612 1359 KIKKIIDEVKEYTKEIEENNKNIKDELDK----SEKL---IKKIKDDINLEECKSKI 1408
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1059-1250 |
2.15e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1059 IKQMEDKVSQLEIELEEERTNADL--LSERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSY 1136
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGLvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSP 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1137 R-SSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVddeHLSLTDQKDQLSLRLKAMKRQVEEAE 1215
Cdd:COG3206 264 ViQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI---LASLEAELEALQAREASLQAQLAQLE 340
|
170 180 190
....*....|....*....|....*....|....*...
gi 568961968 1216 EEIDRLESSKKK---LQRELEEQMGVNEQLQGQLNSLK 1250
Cdd:COG3206 341 ARLAELPELEAElrrLEREVEVARELYESLLQRLEEAR 378
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
805-1229 |
2.49e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 805 RSNSSEQSQAEADLREKvlKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLrkcesevQQLEEALVHARKEEK 884
Cdd:PRK04863 282 RVHLEEALELRRELYTS--RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHL-------NLVQTALRQQEKIER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 885 eatcARRALEkELEQARRELSQVSQEQKELLEKLRDEAEQKEQlrklknemeserwhldkTIEKLQKEMADIAEASRtss 964
Cdd:PRK04863 353 ----YQADLE-ELEERLEEQNEVVEEADEQQEENEARAEAAEE-----------------EVDELKSQLADYQQALD--- 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 965 lELQKQLGEYKEKNRReLAEMQTQLKEKCLEVEKArlaaSKMQDELRLKEEELQDYQRAEEealTKRQLLEQSLKDLEYE 1044
Cdd:PRK04863 408 -VQQTRAIQYQQAVQA-LERAKQLCGLPDLTADNA----EDWLEEFQAKEQEATEELLSLE---QKLSVAQAAHSQFEQA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1045 LEAKSHLKDDRSRliKQMEDKVSQLEIELEEERTNAdllseritwsrEQMEQMRSELlqeKAAKQDLECDKiSLERQNKD 1124
Cdd:PRK04863 479 YQLVRKIAGEVSR--SEAWDVARELLRRLREQRHLA-----------EQLQQLRMRL---SELEQRLRQQQ-RAERLLAE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1125 LKSRIIhLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVM-----------------QVD 1187
Cdd:PRK04863 542 FCKRLG-KNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaqdalarlreQSG 620
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568961968 1188 DEHLS---LTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQ 1229
Cdd:PRK04863 621 EEFEDsqdVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
634-1012 |
2.60e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 48.42 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 634 QNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEmhdeldST 713
Cdd:COG5185 229 INIEEALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAE------YT 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 714 KRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELqaLRESVE 793
Cdd:COG5185 303 KSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSK--SSEELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 794 EATKNVEVLASRSNSSEQSQaeadlrEKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLE 873
Cdd:COG5185 381 SFKDTIESTKESLDEIPQNQ------RGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVM 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 874 ealvharkeekeatcaRRALEKELEQARRELSQVSQEQKELLEKLRDEAEQ-KEQLRKLKNEMESERWHLDKTIEKLQKE 952
Cdd:COG5185 455 ----------------READEESQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSK 518
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 953 MaDIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRL 1012
Cdd:COG5185 519 L-DQVAESLKDFMRARGYAHILALENLIPASELIQASNAKTDGQAANLRTAVIDELTQYL 577
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
475-874 |
2.63e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 48.74 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 475 STGACAPSLPAPNKKEEEIKIATATLMLQNRAVAATSDSGAKKISVKTFPSDSSTQATPDLLKGQQELTQQTNEEtakqi 554
Cdd:PLN02939 11 SHGCGPIRSRAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVME----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 555 lynyLKEGGTDNEDATKRKVNLVFEKIqtlksraagSAQGSNQAPNSpSEGNSLLDqknkliLEVSELQQQLQLEMKNQQ 634
Cdd:PLN02939 86 ----LPQKSTSSDDDHNRASMQRDEAI---------AAIDNEQQTNS-KDGEQLSD------FQLEDLVGMIQNAEKNIL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 635 NIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQhqteIRDLQDQLSEMHDELDSTK 714
Cdd:PLN02939 146 LLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLCV 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 715 RSEDREKGALIEELLQAKQDLQDL---LIAKEEQEDLLRKRERELTALKGALKE---EVSSHDQEMDKLKE-QYDA---E 784
Cdd:PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLkaeLIEVAETEERVFKLEKERSLLDASLRElesKFIVAQEDVSKLSPlQYDCwweK 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 785 LQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEEN---------EKLQGRIAELERR----AAQLQRQMEDV 851
Cdd:PLN02939 302 VENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANvskfssykvELLQQKLKLLEERlqasDHEIHSYIQLY 381
|
410 420
....*....|....*....|....*
gi 568961968 852 KGDEAQAKETLRKC--ESEVQQLEE 874
Cdd:PLN02939 382 QESIKEFQDTLSKLkeESKKRSLEH 406
|
|
| Fez1 |
pfam06818 |
Fez1; This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper ... |
786-939 |
2.72e-05 |
|
Fez1; This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth. Note that some family members contain more than one copy of this region.
Pssm-ID: 462015 [Multi-domain] Cd Length: 198 Bit Score: 46.53 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 786 QALRES-VEEATKNVEVLASRSNSSEqSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRqmedvKGDEAQA-KETLR 863
Cdd:pfam06818 17 QQLKDSqAEVTQKLNEIVALRAQLRE-LRAKLEEKEEQIQELEDSLRSKTLELEVCENELQR-----KKNEAELlREKVG 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961968 864 KCESEVQQLEEALVhARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKlknEMESER 939
Cdd:pfam06818 91 KLEEEVSGLREALS-DVSPSGYESVYESDEAKEQRQEEADLGSLRREVERLRAELREERQRRERQAS---SFEQER 162
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
891-1017 |
3.44e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.15 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 891 RALEKELEQARRELSQVSQEQ----KELLEKLRDE-AEQKEQLRKLKNEMESERwhldKTIEKLQKEMADIaEASRTSSL 965
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQdeasFERLAELRDElAELEEELEALKARWEAEK----ELIEEIQELKEEL-EQRYGKIP 488
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 966 ELQKQLGEYKEknrrELAEMQTQLKEkclEVEKARLAA----------SKM-QDE----LRLkEEEL 1017
Cdd:COG0542 489 ELEKELAELEE----ELAELAPLLRE---EVTEEDIAEvvsrwtgipvGKLlEGEreklLNL-EEEL 547
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1009-1233 |
3.73e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 47.45 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1009 ELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHlkddrsrlikqmedkvSQLEIELEEERTNADLLSERIT 1088
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEGLDSS----------------TALTLELEELRQERDLLREEIQ 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1089 WSREQMEQMRSElLQEKAAKQDLECDkiSLERQNKDLKSRIIhlegSYRSSKEGLVVQMEARIAELEDRLENEERDRANL 1168
Cdd:pfam09787 65 KLRGQIQQLRTE-LQELEAQQQEEAE--SSREQLQELEEQLA----TERSARREAEAELERLQEELRYLEEELRRSKATL 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 1169 QLSNRRLERKVKELVMQVDDEHLSlTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELE 1233
Cdd:pfam09787 138 QSRIKDREAEIEKLRNQLTSKSQS-SSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLE 201
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
854-958 |
3.74e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.15 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 854 DEAQAK---------ETLRKCESEVQQLEEALVHARKEEKEATCARRA-LEKELEQARRELSQVS---QEQKELLEKLRD 920
Cdd:COG0542 396 DEAAARvrmeidskpEELDELERRLEQLEIEKEALKKEQDEASFERLAeLRDELAELEEELEALKarwEAEKELIEEIQE 475
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568961968 921 EAEQKEQLRKLKNEMESERWHLDKTIEKLQKEM------ADIAE 958
Cdd:COG0542 476 LKEELEQRYGKIPELEKELAELEEELAELAPLLreevteEDIAE 519
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
617-952 |
4.16e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 617 LEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEI 696
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 697 RDLQDQLSEMHDeldstKRSEDREKGALIEELLQAKQDL-QDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMD 775
Cdd:TIGR00606 895 TEVQSLIREIKD-----AKEQDSPLETFLEKDQQEKEELiSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 776 KLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEE--NEKLQGRIAELERRAAQLQRQMEDVKg 853
Cdd:TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNltLRKRENELKEVEEELKQHLKEMGQMQ- 1048
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 854 deaqaketLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKEllEKLRDEAEQKEQLRKLKN 933
Cdd:TIGR00606 1049 --------VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE--EKYREMMIVMRTTELVNK 1118
|
330
....*....|....*....
gi 568961968 934 EMESERWHLDKTIEKLQKE 952
Cdd:TIGR00606 1119 DLDIYYKTLDQAIMKFHSM 1137
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
690-916 |
4.43e-05 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 46.28 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 690 EQHQTEIRDLQDQLSEMHDELDSTKRSEDREKgalIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSS 769
Cdd:cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLES---VEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 770 H----DQEMDKLKEQYDAELQALRESVEEATKNVEVLasrsnsseqsQAEADLREKVLKEENEKLQGRIAELERraaqLQ 845
Cdd:cd00176 80 RleelNQRWEELRELAEERRQRLEEALDLQQFFRDAD----------DLEQWLEEKEAALASEDLGKDLESVEE----LL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 846 RQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCarraleKELEQARRELSQVSQEQKELLE 916
Cdd:cd00176 146 KKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKL------EELNERWEELLELAEERQKKLE 210
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
639-960 |
5.26e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 47.44 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 639 ERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIrdLQDQLSEMHDELDSTKRSED 718
Cdd:pfam09731 76 TGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEQEKEKALEEV--LKEAISKAESATAVAKEAKD 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 719 REKGALIEELLQAKQDLQDLLIAKEEQEDLLRKREREL--------TALKGALKEEVSSHDQEMDKLKEQYDAELQALRE 790
Cdd:pfam09731 154 DAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALaeklkeviNLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 791 SVEEATKNVEVL--ASRSNSSEQSQAEADLREK------VLKE----ENEKLQGRIAELERRAAQLQRQMEDVKGDEAQ- 857
Cdd:pfam09731 234 KVEKAQSLAKLVdqYKELVASERIVFQQELVSIfpdiipVLKEdnllSNDDLNSLIAHAHREIDQLSKKLAELKKREEKh 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 858 AKETLRKCESEVQQLEEALVHARKEEKEATCA--RRALEKELEQARREL-----SQVSQEQKELLEKLRDEAEQKEQ--- 927
Cdd:pfam09731 314 IERALEKQKEELDKLAEELSARLEEVRAADEAqlRLEFEREREEIRESYeeklrTELERQAEAHEEHLKDVLVEQEIelq 393
|
330 340 350
....*....|....*....|....*....|....*.
gi 568961968 928 ---LRKLKNEMESERWHLDKTIEKLQKEMADIAEAS 960
Cdd:pfam09731 394 refLQDIKEKVEEERAGRLLKLNELLANLKGLEKAT 429
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
967-1180 |
5.72e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 967 LQKQLGEYKEKNRRELAEMQTQLKEkclevekarlaaskMQDELRLKEEELQDYQRAEEEALT--KRQLLEQSLKDLEYE 1044
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPE--------------LRKELEEAEAALEEFRQKNGLVDLseEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1045 L-EAKSHLKDDRSRLiKQMEDKVSQLEIELEEERTNADLLSeritwSREQMEQMRSELLQEKAAKQDLECDKISLERQNK 1123
Cdd:COG3206 228 LaEARAELAEAEARL-AALRAQLGSGPDALPELLQSPVIQQ-----LRAQLAELEAELAELSARYTPNHPDVIALRAQIA 301
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1124 DLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSN---RRLERKVK 1180
Cdd:COG3206 302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEaelRRLEREVE 361
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
725-1062 |
6.19e-05 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 47.44 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 725 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTalKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLAS 804
Cdd:pfam09731 123 EQEKEKALEEVLKEAISKAESATAVAKEAKDDA--IQAVKAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKEVIN 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 805 RSNSSEQSQA--EADLREKVLKEENEKLQGRIAELERrAAQLQRQMEDVKGDEAQAKETLrkceseVQQLEEALVHARKE 882
Cdd:pfam09731 201 LAKQSEEEAAppLLDAAPETPPKLPEHLDNVEEKVEK-AQSLAKLVDQYKELVASERIVF------QQELVSIFPDIIPV 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 883 EKEATCARRA-LEKELEQARRELSQVSQEqkelLEKLRDEAEQKEQlrklkNEMESERWHLDKTIEKLQKEMADiaeasr 961
Cdd:pfam09731 274 LKEDNLLSNDdLNSLIAHAHREIDQLSKK----LAELKKREEKHIE-----RALEKQKEELDKLAEELSARLEE------ 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 962 tsslELQKQLGEYKEKNRRELAEMQTQLKEKcLEVEKARLAAS---KMQDELRLKEEELQ-------DYQRAEEEALTKR 1031
Cdd:pfam09731 339 ----VRAADEAQLRLEFEREREEIRESYEEK-LRTELERQAEAheeHLKDVLVEQEIELQreflqdiKEKVEEERAGRLL 413
|
330 340 350
....*....|....*....|....*....|...
gi 568961968 1032 QLLEQ--SLKDLEYELEAKSHLkDDRSRLIKQM 1062
Cdd:pfam09731 414 KLNELlaNLKGLEKATSSHSEV-EDENRKAQQL 445
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
809-1108 |
6.43e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 809 SEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATC 888
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 889 ARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQ 968
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 969 KQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMqDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAK 1048
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDS-LEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAI 267
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1049 SHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAK 1108
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKK 327
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
917-1237 |
6.69e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.59 E-value: 6.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 917 KLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKqlGEYKEKNRRELAEMQTQlkEKCLEV 996
Cdd:PLN02939 36 RARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQ--KSTSSDDDHNRASMQRD--EAIAAI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 997 EKARLaaSKMQDELRLKEEELQDY----QRAEEEALTKRQLLEQSLKDLEYELeaksHLKDDRSRLIKQMEDKVSQLEIE 1072
Cdd:PLN02939 112 DNEQQ--TNSKDGEQLSDFQLEDLvgmiQNAEKNILLLNQARLQALEDLEKIL----TEKEALQGKINILEMRLSETDAR 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1073 LE---EERTNADLLSEritwsreQMEQMRSELLQEKAAKQDLEcdkISLERQNKDLKSRIIHLEGSYRSSKEGLVvqmea 1149
Cdd:PLN02939 186 IKlaaQEKIHVEILEE-------QLEKLRNELLIRGATEGLCV---HSLSKELDVLKEENMLLKDDIQFLKAELI----- 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1150 RIAELEDRLENEERDRANLQLSNRRLERKVkeLVMQVDDEHLS------LTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1223
Cdd:PLN02939 251 EVAETEERVFKLEKERSLLDASLRELESKF--IVAQEDVSKLSplqydcWWEKVENLQDLLDRATNQVEKAALVLDQNQD 328
|
330
....*....|....
gi 568961968 1224 SKKKLQrELEEQMG 1237
Cdd:PLN02939 329 LRDKVD-KLEASLK 341
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
689-1026 |
6.86e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 47.16 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 689 REQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDL-----LIAKEEQEDLLRKRERELTA----- 758
Cdd:PLN03229 424 REAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLeyteaVIAMGLQERLENLREEFSKAnsqdq 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 759 -LKGALKEEVsshdqemDKLKEQYDAELQalRESVEEATKN-VEVL--ASRSNSSEQSQAEAdlrEKVLKEENEKLQGRI 834
Cdd:PLN03229 504 lMHPVLMEKI-------EKLKDEFNKRLS--RAPNYLSLKYkLDMLneFSRAKALSEKKSKA---EKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 835 AELERRAaqlqrQMEDVKGDEAQAKetLRKCESEVQQLEEALVHARKEekeatcARRALEKELEQARRELSQVSQEQKEL 914
Cdd:PLN03229 572 DRPEIKE-----KMEALKAEVASSG--ASSGDELDDDLKEKVEKMKKE------IELELAGVLKSMGLEVIGVTKKNKDT 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 915 LEKLRDEaEQKEQLRKLKNEMESE------RWHLDKTIEKLQKEMAdiaEASRTSSLELQKQLGEYKEKNRRELAEM--Q 986
Cdd:PLN03229 639 AEQTPPP-NLQEKIESLNEEINKKiervirSSDLKSKIELLKLEVA---KASKTPDVTEKEKIEALEQQIKQKIAEAlnS 714
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568961968 987 TQLKEKC--LEVEKARLAASKMQDELRLKEEELQDYQRAEEE 1026
Cdd:PLN03229 715 SELKEKFeeLEAELAAARETAAESNGSLKNDDDKEEDSKEDG 756
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
611-905 |
7.66e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 611 QKNKLILEVSELQQQLQLEMKnqqniKEERERMREdlEELRVrHQSQVEETATLQRRLEESEGELRKSLEELFQVKMERE 690
Cdd:pfam17380 338 EQERMAMERERELERIRQEER-----KRELERIRQ--EEIAM-EISRMRELERLQMERQQKNERVRQELEAARKVKILEE 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 691 QHQteiRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSH 770
Cdd:pfam17380 410 ERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDR 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 771 DQEMDKLKEQYDAELQALRESVEEATKNVEVLasrsnsseqsQAEADLREKVLKEENEKlqgRIAELERRAaqlQRQMED 850
Cdd:pfam17380 487 KRAEEQRRKILEKELEERKQAMIEEERKRKLL----------EKEMEERQKAIYEEERR---REAEEERRK---QQEMEE 550
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 851 VKgdeaQAKETLRKCESEVQQLEEAlvharkeEKEATCARRALEKELEQARRELS 905
Cdd:pfam17380 551 RR----RIQEQMRKATEERSRLEAM-------EREREMMRQIVESEKARAEYEAT 594
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
856-1234 |
7.87e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 856 AQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQV-------------SQEQKELLEKLRDEA 922
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVqtalrqqekieryQEDLEELTERLEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 923 EQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRtsslELQKQLGEYKEKNRReLAEMQTQLKEKCLEVEKArla 1002
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD----VQQTRAIQYQQAVQA-LEKARALCGLPDLTPENA--- 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1003 askmqdelrlkEEELQDYQRAEEEALTKRQLLEQSLKDLEyelEAKSHLkDDRSRLIKQMEDKVSQLEI-----ELEEER 1077
Cdd:COG3096 440 -----------EDYLAAFRAKEQQATEEVLELEQKLSVAD---AARRQF-EKAYELVCKIAGEVERSQAwqtarELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1078 TNADLLSERITWSREQMEQMRSELLQEKAAKQDLE--CDKISLERQNKDLKsriihlegsyrsskEGLVVQMEARIAELE 1155
Cdd:COG3096 505 RSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEefCQRIGQQLDAAEEL--------------EELLAELEAQLEELE 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1156 DRLENEERDRANLQLSNRRLERKVKELVMQVD---DEHLSLTDQKDQLSLRLK-------AMKRQVE---EAEEEIDRLE 1222
Cdd:COG3096 571 EQAAEAVEQRSELRQQLEQLRARIKELAARAPawlAAQDALERLREQSGEALAdsqevtaAMQQLLErerEATVERDELA 650
|
410
....*....|..
gi 568961968 1223 SSKKKLQRELEE 1234
Cdd:COG3096 651 ARKQALESQIER 662
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
734-1236 |
9.80e-05 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 46.61 E-value: 9.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 734 DLQDLLIAKEEqedlLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaELQALRESVEeatknvevLASRSNSSEQSQ 813
Cdd:pfam05622 1 DLSEAQEEKDE----LAQRCHELDQQVSLLQEEKNSLQQENKKLQERLD-QLESGDDSGT--------PGGKKYLLLQKQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 814 AEAdlrekvLKEENEKLQG-------RIAELERRAAQLQRQMEDVKG--DEAQAketlrkCESEVQQLEEALVHARKEEK 884
Cdd:pfam05622 68 LEQ------LQEENFRLETarddyriKCEELEKEVLELQHRNEELTSlaEEAQA------LKDEMDILRESSDKVKKLEA 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 885 EATCARRALEkELEQARRelsQVSQEQKELLEKLRDEAEQKEQLRKLKNEmeseRWHLDKTIEKLQkemadiaeasrtss 964
Cdd:pfam05622 136 TVETYKKKLE-DLGDLRR---QVKLLEERNAEYMQRTLQLEEELKKANAL----RGQLETYKRQVQ-------------- 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 965 lELQKQLGEYKEKNRRELAEMQtQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEyE 1044
Cdd:pfam05622 194 -ELHGKLSEESKKADKLEFEYK-KLEEKLEALQKEKERLIIERDTLRETNEELRCAQLQQAELSQADALLSPSSDPGD-N 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1045 LEAKSHLKDDRSRLIK--------------QMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRS--ELLQEKAAK 1108
Cdd:pfam05622 271 LAAEIMPAEIREKLIRlqhenkmlrlgqegSYRERLTELQQLLEDANRRKNELETQNRLANQRILELQQqvEELQKALQE 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1109 QDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLV--------VQMEARIAELEDRLENEERDRANLQLSNRRLERKVK 1180
Cdd:pfam05622 351 QGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKKEQIeelepkqdSNLAQKIDELQEALRKKDEDMKAMEERYKKYVEKAK 430
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 1181 ELVMQVDDEhlsltdQKDQLSLRLKAMKRQVEEAEEEIDRLESSKK--KLQRELEEQM 1236
Cdd:pfam05622 431 SVIKTLDPK------QNPASPPEIQALKNQLLEKDKKIEHLERDFEksKLQREQEEKL 482
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
869-1087 |
1.06e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 869 VQQLEEALVHARKEEK--EATCARRALEKELEQARRELSQ----------------VSQEQKELLEKLRDEAEQKEQLRK 930
Cdd:COG3206 154 ANALAEAYLEQNLELRreEARKALEFLEEQLPELRKELEEaeaaleefrqknglvdLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 931 LKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQlgeykeKNRRELAEMQTQLKEKCLEVEKARlaaSKMQDEL 1010
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLA------ELEAELAELSARYTPNHPDVIALR---AQIAALR 304
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 1011 RLKEEELQdyqRAEEEALTKRQLLEQSLKDLEYELEAKShlkdDRSRLIKQMEDKVSQLEIELEEERTNADLLSERI 1087
Cdd:COG3206 305 AQLQQEAQ---RILASLEAELEALQAREASLQAQLAQLE----ARLAELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
609-728 |
1.10e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.11 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 609 LDQKNKlilEVSELQQQLQLEMKNQQNIKEERERMREDL---EELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQV 685
Cdd:PRK09039 55 LDRLNS---QIAELADLLSLERQGNQDLQDSVANLRASLsaaEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQV 131
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 568961968 686 KmEREQHQTE-----IRDLQDQLSEMHDELDSTKrSEDREKGALIEEL 728
Cdd:PRK09039 132 S-ARALAQVEllnqqIAALRRQLAALEAALDASE-KRDRESQAKIADL 177
|
|
| CCDC47 |
pfam07946 |
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of ... |
859-930 |
1.10e-04 |
|
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of the PAT complex, an endoplasmic reticulum (ER)-resident membrane multiprotein complex that facilitates multi-pass membrane proteins insertion into membranes. The PAT complex, formed by CCDC47 and Asterix proteins, acts as an intramembrane chaperone by directly interacting with nascent transmembrane domains (TMDs), releasing its substrates upon correct folding, and is needed for optimal biogenesis of multi-pass membrane proteins. CCDC47 is required to maintain the stability of Asterix. CCDC47 is associated with various membrane-associated processes and is component of a ribosome-associated ER translocon complex involved in multi-pass membrane protein transport into the ER membrane and biogenesis. It is also involved in the regulation of calcium ion homeostasis in the ER, being also required for proper protein degradation via the ERAD (ER-associated degradation) pathway.
Pssm-ID: 462322 Cd Length: 323 Bit Score: 46.02 E-value: 1.10e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 859 KETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVS-QEQKELLEKlrdeaEQKEQLRK 930
Cdd:pfam07946 256 PEALKKAKKTREEEIEKIKKAAEEERAEEAQEKKEEAKKKEREEKLAKLSpEEQRKYEEK-----ERKKEQRK 323
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
687-1045 |
1.20e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 687 MEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKqdLQDLL-IAKEEQEDLLRKRERELTALkgalke 765
Cdd:PLN02939 84 MELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQ--LEDLVgMIQNAEKNILLLNQARLQAL------ 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 766 evsshdQEMDKL---KEQYDAELQALRESVEEATknvevlaSRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAA 842
Cdd:PLN02939 156 ------EDLEKIlteKEALQGKINILEMRLSETD-------ARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVH 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKGDEAQAK---ETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKE------ 913
Cdd:PLN02939 223 SLSKELDVLKEENMLLKddiQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDcwwekv 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 914 -----LLEKLRDEAEQK----EQLRKLKNEMESERWHLDKT-IEKLQKEMADIaeasrtssleLQKQLGEYKEKNRRELA 983
Cdd:PLN02939 303 enlqdLLDRATNQVEKAalvlDQNQDLRDKVDKLEASLKEAnVSKFSSYKVEL----------LQQKLKLLEERLQASDH 372
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568961968 984 EMQTQlkekcleVEKARLAASKMQDEL-RLKEEelqdyqraeeealTKRQLLEQSLKDLEYEL 1045
Cdd:PLN02939 373 EIHSY-------IQLYQESIKEFQDTLsKLKEE-------------SKKRSLEHPADDMPSEF 415
|
|
| HAMP |
COG2770 |
HAMP domain [Signal transduction mechanisms]; |
695-1047 |
1.42e-04 |
|
HAMP domain [Signal transduction mechanisms];
Pssm-ID: 442051 [Multi-domain] Cd Length: 631 Bit Score: 46.26 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 695 EIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEM 774
Cdd:COG2770 266 EIGELARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 775 DKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGD 854
Cdd:COG2770 346 LAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 855 EAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNE 934
Cdd:COG2770 426 AAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGAAAEEL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 935 MESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKE 1014
Cdd:COG2770 506 AEELLLLEGLLLLLLLEAEALEVAEELLELEEAALLLAAAAELAALLALLLALAAVEAAALLLAALLLAAVAALLELAAL 585
|
330 340 350
....*....|....*....|....*....|...
gi 568961968 1015 EELQDYQRAEEEALTKRQLLEQSLKDLEYELEA 1047
Cdd:COG2770 586 LLLLLAAAEALAALELELAAAAEAALAEAELLE 618
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
582-905 |
1.46e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.37 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 582 QTLKSRAAgsaQGSNQAPNSPSEGNSLLDQKNKLILEVSELQQQL-----QLEM-KNQQNIKEERERMREDLEELRVRHQ 655
Cdd:NF012221 1503 KTLKLTAK---AGSNRLEFKGTGHNDGLGYILDNVVATSESSQQAdavskHAKQdDAAQNALADKERAEADRQRLEQEKQ 1579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 656 SQVEETATLQRRLEESEgelRKSLEELFQVkmEREQHQTEIRDLQDQLSEMHDELDS-------TKRSEDREKGALIEEL 728
Cdd:NF012221 1580 QQLAAISGSQSQLESTD---QNALETNGQA--QRDAILEESRAVTKELTTLAQGLDAldsqatyAGESGDQWRNPFAGGL 1654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 729 LQAKQ-DLQDL-LIAKEEQEDLLRKRERELTALKGAL-KEEVSSHDQEmdklKEQYDAELQALRESVEEATKNVEVLASR 805
Cdd:NF012221 1655 LDRVQeQLDDAkKISGKQLADAKQRHVDNQQKVKDAVaKSEAGVAQGE----QNQANAEQDIDDAKADAEKRKDDALAKQ 1730
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 806 SNSSE-QSQAEADLREKVLKEENE-KLQGRIAELERRAAQLQRQMEDVKGDEAQAK-ETLRKCESEVQQLEEALVHARKE 882
Cdd:NF012221 1731 NEAQQaESDANAAANDAQSRGEQDaSAAENKANQAQADAKGAKQDESDKPNRQGAAgSGLSGKAYSVEGVAEPGSHINPD 1810
|
330 340
....*....|....*....|...
gi 568961968 883 EKEATCARRAlEKELEQARRELS 905
Cdd:NF012221 1811 SPAAADGRFS-EGLTEQEQEALE 1832
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
621-1010 |
1.76e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.20 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 621 ELQQQLQLEMKNQQNIKEERERmrEDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELfqvkmerEQHQTEIRDlq 700
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQL-------PQQQTEARR-- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 701 dQLSEMHDELDSTKRSEDREKGALIEeLLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEevsshdqemdKLKEQ 780
Cdd:PRK10929 152 -QLNEIERRLQTLGTPNTPLAQAQLT-ALQAESAALKALVDELELAQLSANNRQELARLRSELAK----------KRSQQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 781 YDAELQALRESV--------EEATKNVEVLAsrsnssEQSqaeADLREKVLKE--ENEKLQGRIAElerraaQLQRqMED 850
Cdd:PRK10929 220 LDAYLQALRNQLnsqrqreaERALESTELLA------EQS---GDLPKSIVAQfkINRELSQALNQ------QAQR-MDL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 851 VKGDEAQAketlrkcESEVQQLEEALvharkeekeatcarralekeleQARRELSQVSQEQKELLEKLRDEAE---QKEQ 927
Cdd:PRK10929 284 IASQQRQA-------ASQTLQVRQAL----------------------NTLREQSQWLGVSNALGEALRAQVArlpEMPK 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 928 LRKLKNEMES---ERWHLDKTIEKLQKEMaDIAEASRTSSLELQKQLGEYKEKNRRELAemqTQLKEKC----LEVEKAR 1000
Cdd:PRK10929 335 PQQLDTEMAQlrvQRLRYEDLLNKQPQLR-QIRQADGQPLTAEQNRILDAQLRTQRELL---NSLLSGGdtliLELTKLK 410
|
410
....*....|
gi 568961968 1001 LAASKMQDEL 1010
Cdd:PRK10929 411 VANSQLEDAL 420
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
634-799 |
1.77e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 634 QNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHD----- 708
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkeye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 709 ----ELDSTKR----SEDREKgALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQ 780
Cdd:COG1579 93 alqkEIESLKRrisdLEDEIL-ELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
170
....*....|....*....
gi 568961968 781 YDAELQALRESVEEATKNV 799
Cdd:COG1579 172 IPPELLALYERIRKRKNGL 190
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
838-1032 |
1.96e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 838 ERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEAtcarralEKELEQARRELSQVSQEQKELLEK 917
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL-------QAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 918 LRDEA----EQKEQLRKLKNEMESE-------RWHLDKTIEKLQKEMADIAEASRTSSLELQKQLgeykEKNRRELAEMQ 986
Cdd:COG3883 88 LGERAralyRSGGSVSYLDVLLGSEsfsdfldRLSALSKIADADADLLEELKADKAELEAKKAEL----EAKLAELEALK 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 568961968 987 TQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQ 1032
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
763-1083 |
2.08e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.28 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 763 LKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAA 842
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEA 922
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 923 EQKEQLRKLKNEMESErwHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLA 1002
Cdd:COG4372 164 EELAALEQELQALSEA--EAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1003 ASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADL 1082
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAAL 321
|
.
gi 568961968 1083 L 1083
Cdd:COG4372 322 L 322
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
956-1106 |
2.13e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.62 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 956 IAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRaeeealtkrqllE 1035
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLER------------E 449
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 1036 QSLKDLEYELEAKshlkddRSRLIKQMEDKVSQLEIELEEERTNADLLSERItwsrEQMEQMRSELLQEKA 1106
Cdd:COG2433 450 LSEARSEERREIR------KDREISRLDREIERLERELEEERERIEELKRKL----ERLKELWKLEHSGEL 510
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
724-1223 |
2.70e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 45.21 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 724 LIEELLQAKQDLQDLLIAKE----EQEDLLRKRERELTALKGALKEEVSSHdqeMDKLKEQ-YDAELQALRESVEEATKN 798
Cdd:PRK04778 30 RIDELEERKQELENLPVNDElekvKKLNLTGQSEEKFEEWRQKWDEIVTNS---LPDIEEQlFEAEELNDKFRFRKAKHE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 799 VEVLASRSNSSEQSQAeaDLREKV--LKEENEKLQGRIAELERRAAQLQRqmeDVKGDEAQAKETLRKCESEVQQLEEAL 876
Cdd:PRK04778 107 INEIESLLDLIEEDIE--QILEELqeLLESEEKNREEVEQLKDLYRELRK---SLLANRFSFGPALDELEKQLENLEEEF 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 877 VHArKEEKEATCARRAlEKELEQARRELSQVSQ---EQKELLEKLrdEAEQKEQLRKLKN---EMESERWHLDKtieklq 950
Cdd:PRK04778 182 SQF-VELTESGDYVEA-REILDQLEEELAALEQimeEIPELLKEL--QTELPDQLQELKAgyrELVEEGYHLDH------ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 951 kemadiaeasrtssLELQKQLGEYKEKNRRELAEMQTqlkekcLEVEKARlaaskmqDELRLKEEELQdyqraeeealtk 1030
Cdd:PRK04778 252 --------------LDIEKEIQDLKEQIDENLALLEE------LDLDEAE-------EKNEEIQERID------------ 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1031 rQLLEQslkdLEYELEAKshlkddrsrliKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQD 1110
Cdd:PRK04778 293 -QLYDI----LEREVKAR-----------KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQ 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1111 LEcdkiSLERQNKDLKSRIIHLEGSYRSSKEGL------VVQMEARIAELEDRL------ENEERDRAN-----LQLSNR 1173
Cdd:PRK04778 357 LE----SLEKQYDEITERIAEQEIAYSELQEELeeilkqLEEIEKEQEKLSEMLqglrkdELEAREKLEryrnkLHEIKR 432
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 1174 RLER--------KVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLES 1223
Cdd:PRK04778 433 YLEKsnlpglpeDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEE 490
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
875-1047 |
2.84e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 875 ALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMA 954
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 955 DIAEASRTSS---------------------LELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLK 1013
Cdd:COG3883 90 ERARALYRSGgsvsyldvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190
....*....|....*....|....*....|....
gi 568961968 1014 EEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA 1047
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEA 203
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
862-1036 |
3.16e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 862 LRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESErwh 941
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 942 ldKTIEKLQKEMaDIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDyQ 1021
Cdd:COG1579 89 --KEYEALQKEI-ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-E 164
|
170
....*....|....*
gi 568961968 1022 RAEEEALTKRQLLEQ 1036
Cdd:COG1579 165 REELAAKIPPELLAL 179
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
600-843 |
3.18e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 600 NSPSEGNSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQS-----QVEETATLQRRL-----E 669
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlaRLELRALLEERFaaalgD 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 670 ESEGELRKSLEElfqvkmEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDL----LIAKEEQ 745
Cdd:COG4913 762 AVERELRENLEE------RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLeedgLPEYEER 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 746 -EDLLRKRE-RELTALKGALKEEVSSHDQEMDKL-------------------KEQYDAELQALRESVEEATknvevlas 804
Cdd:COG4913 836 fKELLNENSiEFVADLLSKLRRAIREIKERIDPLndslkripfgpgrylrleaRPRPDPEVREFRQELRAVT-------- 907
|
250 260 270
....*....|....*....|....*....|....*....
gi 568961968 805 rSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQ 843
Cdd:COG4913 908 -SGASLFDEELSEARFAALKRLIERLRSEEEESDRRWRA 945
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
793-942 |
3.25e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 44.99 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 793 EEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRA------AQLQRQMEDVKGDEAQ--------- 857
Cdd:pfam05262 188 EDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKAdfaqdnADKQRDEVRQKQQEAKnlpkpadts 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 858 -AKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQvsQEQKELLEKLRDEAEQKEQLRKLKNEME 936
Cdd:pfam05262 268 sPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEK--EAEDKELEAQKKREPVAEDLQKTKPQVE 345
|
....*.
gi 568961968 937 SERWHL 942
Cdd:pfam05262 346 AQPTSL 351
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
694-937 |
3.32e-04 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 43.94 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 694 TEIRDLQDQLSEmhdeldstKRSEDREKGALIEELLQAKQDL-QDlliAKEEQEDLLRKRERELTALKGAlkEEVSSHDQ 772
Cdd:pfam06008 19 YNLENLTKQLQE--------YLSPENAHKIQIEILEKELSSLaQE---TEELQKKATQTLAKAQQVNAES--ERTLGHAK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 773 EMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREkvLKEENEKLQGRIAELERRAAQ--------- 843
Cdd:pfam06008 86 ELAEAIKNLIDNIKEINEKVATLGENDFALPSSDLSRMLAEAQRMLGE--IRSRDFGTQLQNAEAELKAAQdllsriqtw 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAE 923
Cdd:pfam06008 164 FQSPQEENKALANALRDSLAEYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKNQLEETLKTARD 243
|
250
....*....|....
gi 568961968 924 QKEQLRKLKNEMES 937
Cdd:pfam06008 244 SLDAANLLLQEIDD 257
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
772-1162 |
3.45e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 772 QEMDK-----LKEQYDAELQALRESVEeatknVEVlasrsnsseqsqaeADLREKVLKEENEKLQGRIAELERRAAQLQR 846
Cdd:PRK05771 4 VRMKKvlivtLKSYKDEVLEALHELGV-----VHI--------------EDLKEELSNERLRKLRSLLTKLSEALDKLRS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 847 QMEDVKGDEAqaketlRKCESEVQQLEEALvharkeekeatcarRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKE 926
Cdd:PRK05771 65 YLPKLNPLRE------EKKKVSVKSLEELI--------------KDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 927 QLRKLKNemeserwhLDktieklqkemADIAEASRTSSLELqkQLGEYKEKNRRELAEMQTQLKEKCLEVEKAR-----L 1001
Cdd:PRK05771 125 RLEPWGN--------FD----------LDLSLLLGFKYVSV--FVGTVPEDKLEELKLESDVENVEYISTDKGYvyvvvV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1002 AASKMQDELrlkEEELQDYQRAEEEALTKRQLLEQsLKDLEYELEAkshLKDDRSRLIKQMEDKVSQLEIELeeertnad 1081
Cdd:PRK05771 185 VLKELSDEV---EEELKKLGFERLELEEEGTPSEL-IREIKEELEE---IEKERESLLEELKELAKKYLEEL-------- 249
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1082 llseritwsREQMEQMRSELLQEKAAKQDLECDKISL------ERQNKDLKSRIihlegsyRSSKEGLVVqmearIAELE 1155
Cdd:PRK05771 250 ---------LALYEYLEIELERAEALSKFLKTDKTFAiegwvpEDRVKKLKELI-------DKATGGSAY-----VEFVE 308
|
....*..
gi 568961968 1156 DRLENEE 1162
Cdd:PRK05771 309 PDEEEEE 315
|
|
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
606-913 |
3.64e-04 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 44.67 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 606 NSLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESE---GELRKSLEEL 682
Cdd:pfam15070 57 TSLAELKNQAAVPPAEEEQPPAGPSEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEqrlLELERAAERW 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 683 FQVKMEREQ--------------HQTEIRDLQDQLSEMHD----------ELDSTKRSEDREKGALIEELLQAKQDLQDL 738
Cdd:pfam15070 137 GEQAEDRKQiledmqsdratisrALSQNRELKEQLAELQNgfvkltnenmELTSALQSEQHVKKELAKKLGQLQEELGEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 739 liakEEQEDLlrkRERELTALKgALKEEVSSHDQemdklkeQYDAELQALRESVEEATKNVEV---LASRSNSSE-QSQA 814
Cdd:pfam15070 217 ----KETLEL---KSQEAQSLQ-EQRDQYLAHLQ-------QYVAAYQQLASEKEELHKQYLLqtqLMDRLQHEEvQGKV 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 815 EADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAK--------------ETLRKCESEVQQLEEALVHAR 880
Cdd:pfam15070 282 AAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEGDGLESEeeeeeaprpslsipEDFESREAMVAFFNSALAQAE 361
|
330 340 350
....*....|....*....|....*....|...
gi 568961968 881 KEEKEatcARRALEKELEQARRELSQVSQEQKE 913
Cdd:pfam15070 362 EERAE---LRRQLKEQKRRCRRLAQQAAPAQEE 391
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
829-952 |
3.67e-04 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 42.61 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 829 KLQGRIAELERRAAQLQRQMEDVKGDEAQAK-ETLRKCESEVQQLEEALVHARKEEKEATCAR--------------RAL 893
Cdd:pfam08614 11 RLLDRTALLEAENAKLQSEPESVLPSTSSSKlSKASPQSASIQSLEQLLAQLREELAELYRSRgelaqrlvdlneelQEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568961968 894 EKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKL----KNEMES---ERWHLDKTIEKLQKE 952
Cdd:pfam08614 91 EKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLnqdlQDELVAlqlQLNMAEEKLRKLEKE 156
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
922-1101 |
4.11e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 922 AEQKEQLRKLKnEMESERWHLDKTIEKLQKEMADIAEASRtsslELQKQLGEYKEknrrELAEMQTQLKEKCLEVEKARL 1001
Cdd:COG1579 3 PEDLRALLDLQ-ELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKT----ELEDLEKEIKRLELEIEEVEA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1002 AASKMQDELRL--KEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKshlkddrSRLIKQMEDKVSQLEIELEEERTN 1079
Cdd:COG1579 74 RIKKYEEQLGNvrNNKEYEALQKEIESLKRRISDLEDEILELMERIEEL-------EEELAELEAELAELEAELEEKKAE 146
|
170 180
....*....|....*....|..
gi 568961968 1080 ADLLSERITWSREQMEQMRSEL 1101
Cdd:COG1579 147 LDEELAELEAELEELEAEREEL 168
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
549-753 |
4.12e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 549 ETAKQILYNYLKEGGTDNEDATKRKVNLVFEKIQTLKSRAAGSA------QGSNQAPNSPSEGNSLLDQKNKLILEVSEL 622
Cdd:COG3206 152 AVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEaaleefRQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 623 QQQL------------QLEMKNQ-----------QNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSL 679
Cdd:COG3206 232 RAELaeaearlaalraQLGSGPDalpellqspviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 680 EE-LFQVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDrekgalieELLQAKQDLQdllIAKEEQEDLLRKRE 753
Cdd:COG3206 312 QRiLASLEAELEALQAREASLQAQLAQLEARLAELPELEA--------ELRRLEREVE---VARELYESLLQRLE 375
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
607-936 |
4.16e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 607 SLLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVK 686
Cdd:COG4372 14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 687 MEREQHQTEIRDLQDQLSEMHDELDSTKrsedREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEE 766
Cdd:COG4372 94 AELAQAQEELESLQEEAEELQEELEELQ----KERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAAL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 767 VSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRaAQLQR 846
Cdd:COG4372 170 EQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE-LEEDK 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 847 QMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKE 926
Cdd:COG4372 249 EELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKL 328
|
330
....*....|
gi 568961968 927 QLRKLKNEME 936
Cdd:COG4372 329 ELALAILLAE 338
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1084-1254 |
4.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1084 SERITWSREQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVvQMEARIAELEDRLENEER 1163
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA-ALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1164 DRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQR---ELEEQMGVNE 1240
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAlraELEAERAELE 177
|
170
....*....|....
gi 568961968 1241 QLQGQLNSLKKGLR 1254
Cdd:COG4942 178 ALLAELEEERAALE 191
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
685-834 |
4.98e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 4.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 685 VKMEREQHQTEIRDLQDQLSEMHDELDSTKRSED---REKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKG 761
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALKKEQDeasFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELE 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 762 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEAtkNV-EVLA-------SRSNSSEqsqaeadlREKVLKEEnEKLQGR 833
Cdd:COG0542 482 QRYGKIPELEKELAELEEELAELAPLLREEVTEE--DIaEVVSrwtgipvGKLLEGE--------REKLLNLE-EELHER 550
|
.
gi 568961968 834 I 834
Cdd:COG0542 551 V 551
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
603-1075 |
6.40e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.96 E-value: 6.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 603 SEGNSLLDQKNKLIL----EVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEES-EGELRk 677
Cdd:pfam05557 93 NEKESQLADAREVISclknELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLaEAEQR- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 678 sLEELFQVKMEREQHQTEIRDLQDQLSEMHDEldstkrseDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELT 757
Cdd:pfam05557 172 -IKELEFEIQSQEQDSEIVKNSKSELARIPEL--------EKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 758 AlkgalKEEVSSHDQEMDKLKeqydAELQALRESVEEATKNVEVLASRSNSSEQSQAeadlREKVLKEENEKLQGRIAEL 837
Cdd:pfam05557 243 Y-----REEAATLELEKEKLE----QELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQ----REIVLKEENSSLTSSARQL 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 838 ERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEekeatcaRRALEKELEQARRELSQVSQEQKelleK 917
Cdd:pfam05557 310 EKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKE-------RDGYRAILESYDKELTMSNYSPQ----L 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 918 LRDEAEQKEQLRKLKNEMESERWHLDKTIEKL--QKEMADIAEAS-----RTSSLELQKQLGEYKEKNRRELAEMQTQLK 990
Cdd:pfam05557 379 LERIEEAEDMTQKMQAHNEEMEAQLSVAEEELggYKQQAQTLERElqalrQQESLADPSYSKEEVDSLRRKLETLELERQ 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 991 E-----KCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQL---------LEQSLKDLEYELEAKSHLKDDRS 1056
Cdd:pfam05557 459 RlreqkNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKNQLeklqaeierLKRLLKKLEDDLEQVLRLPETTS 538
|
490
....*....|....*....
gi 568961968 1057 RLIKQmedKVSQLEIELEE 1075
Cdd:pfam05557 539 TMNFK---EVLDLRKELES 554
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
621-904 |
6.68e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.36 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 621 ELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQ 700
Cdd:COG1340 12 ELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 701 DQLSEMHDELDSTKRSEdREKGALIEEL--LQAKQDLQDLLIAKEEQedlLRKRERELTALKGALKEEVSSHDQEMDKLk 778
Cdd:COG1340 92 EELDELRKELAELNKAG-GSIDKLRKEIerLEWRQQTEVLSPEEEKE---LVEKIKELEKELEKAKKALEKNEKLKELR- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 779 eqydAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLqrqmedvkgdeaqa 858
Cdd:COG1340 167 ----AELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADEL-------------- 228
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568961968 859 KETLRKCESEVQQLEEALVHARKEEKEAtcARRALEKELEQARREL 904
Cdd:COG1340 229 HEEIIELQKELRELRKELKKLRKKQRAL--KREKEKEELEEKAEEI 272
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
834-922 |
6.93e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.92 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 834 IAELERRAAQLQRQMEDVKGDEAQA-KETLRKCESEVQQLEEALVHAR---KEEKEATCARRALEKELEQARRELSQVSQ 909
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQDEAsFERLAELRDELAELEEELEALKarwEAEKELIEEIQELKEELEQRYGKIPELEK 492
|
90
....*....|...
gi 568961968 910 EQKELLEKLRDEA 922
Cdd:COG0542 493 ELAELEEELAELA 505
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
845-1124 |
8.27e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 43.37 E-value: 8.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 845 QRQMEDVKGDEAQAKETLRKCESEV-QQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKEllEKLRDEAE 923
Cdd:pfam13868 25 DAQIAEKKRIKAEEKEEERRLDEMMeEERERALEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYE--EKLQEREQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 924 QKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAA 1003
Cdd:pfam13868 103 MDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1004 SKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLL 1083
Cdd:pfam13868 183 EREIARLRAQQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEE 262
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568961968 1084 SERITwsREQMEQMRSELLQEKAAKQDLECDKISLERQNKD 1124
Cdd:pfam13868 263 FERML--RKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEE 301
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
890-1141 |
8.34e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.48 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 890 RRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ---LRKLKNEMESERWHLDKTiEKLQkeMADIAEASRTSSLE 966
Cdd:pfam05667 245 RTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSsfsGSSTTDTGLTKGSRFTHT-EKLQ--FTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 967 LQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELE 1046
Cdd:pfam05667 322 KVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLPDAEE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 AKSHLKddrsRLIKQMEDKVSQLEIE--------LEEERTNADLLSERITWSREQMEQMRS--ELLQEKAAKQDLECDKI 1116
Cdd:pfam05667 402 NIAKLQ----ALVDASAQRLVELAGQwekhrvplIEEYRALKEAKSNKEDESQRKLEEIKElrEKIKEVAEEAKQKEELY 477
|
250 260 270
....*....|....*....|....*....|....*
gi 568961968 1117 S-----LERQNKDLK-----SRIIHLEGSYRSSKE 1141
Cdd:pfam05667 478 KqlvaeYERLPKDVSrsaytRRILEIVKNIKKQKE 512
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
908-1057 |
8.72e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.45 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 908 SQEQKELLEKLRDEAEQK-EQLRKLKNEMESERWHLDK---TIEKLQKEMADIAEASRTSSLELQKQLGEYKeknRRELA 983
Cdd:pfam05262 208 SQEDAKRAQQLKEELDKKqIDADKAQQKADFAQDNADKqrdEVRQKQQEAKNLPKPADTSSPKEDKQVAENQ---KREIE 284
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568961968 984 EMQTQLKEKCLEVEKAR-LAASKMQDELRLKEEELQDyqrAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSR 1057
Cdd:pfam05262 285 KAQIEIKKNDEEALKAKdHKAFDLKQESKASEKEAED---KELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAI 356
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
840-1246 |
9.07e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 840 RAAQLQRQMEDVKGDEAqakETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLR 919
Cdd:pfam07888 28 RAELLQNRLEECLQERA---ELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 920 DEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELqkqlgeykEKNRRELAEMQTQLKEKCLEVEKA 999
Cdd:pfam07888 105 ELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETEL--------ERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1000 RLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEakshlkddrsrlikQMEDKVSQLEIELEEERTn 1079
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT--------------TAHRKEAENEALLEELRS- 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1080 adlLSERITWSREQMEQMRSELlQEKAAKQD----------LECDKISLERQNKDLKSRiihlEGSYRSSKEGlvvqmea 1149
Cdd:pfam07888 242 ---LQERLNASERKVEGLGEEL-SSMAAQRDrtqaelhqarLQAAQLTLQLADASLALR----EGRARWAQER------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1150 riaelEDRLENEERDRANLQLSNR---RLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKK 1226
Cdd:pfam07888 307 -----ETLQQSAEADKDRIEKLSAelqRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKE 381
|
410 420
....*....|....*....|
gi 568961968 1227 KLQRELEEQMGVNEQLQGQL 1246
Cdd:pfam07888 382 QLQAEKQELLEYIRQLEQRL 401
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
899-1182 |
1.07e-03 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 43.24 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 899 QARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKN 978
Cdd:COG4251 1 LLLLALLLLLLLLLLLLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 979 RRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHLKDDRSRL 1058
Cdd:COG4251 81 LLLLLLLELALVLLALLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLRLALALLLLLLLLLLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1059 IKQMEDKVSQLEIELEEERTNADLLSERITWSREQMEQMRSELLQEKAAKQDLEcDKISLERQNKDLKSRIIHLEGSYRS 1138
Cdd:COG4251 161 LLLLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLE-AELLLSLGGGLGLLLLLLLLLVLLL 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568961968 1139 SKEGLVVQMEARIAELEDRLENEERDRAnLQLSNRRLERKVKEL 1182
Cdd:COG4251 240 LLILLLLLLILVLELLELRLELEELEEE-LEERTAELERSNEEL 282
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
788-955 |
1.21e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 41.80 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 788 LRESVEEA-TKNVEVLASRSNSSEQSQAEADLREKVL--KEENEKLQGRI-AELERRAAQLQRQMEDVKgdeaQAKETLR 863
Cdd:pfam12072 20 VRKSIAEAkIGSAEELAKRIIEEAKKEAETKKKEALLeaKEEIHKLRAEAeRELKERRNELQRQERRLL----QKEETLD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 864 KCESEVQQLEEALvharkEEKEATCARRalEKELEQARRELSQVSQEQKELLEKL----RDEAEQkEQLRKLKNEMESER 939
Cdd:pfam12072 96 RKDESLEKKEESL-----EKKEKELEAQ--QQQLEEKEEELEELIEEQRQELERIsgltSEEAKE-ILLDEVEEELRHEA 167
|
170
....*....|....*.
gi 568961968 940 WHLDKTIEKLQKEMAD 955
Cdd:pfam12072 168 AVMIKEIEEEAKEEAD 183
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
674-840 |
1.27e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 674 ELRKSLEELFQvkmereqhqTEIRDLQDQLSEMHDELDSTKRSEDREKGALIE---ELLQAKQDLQDLLIAKEEQED--- 747
Cdd:pfam13166 268 ERKAALEAHFD---------DEFTEFQNRLQKLIEKVESAISSLLAQLPAVSDlasLLSAFELDVEDIESEAEVLNSqld 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 748 -----LLRKRER------------ELTALKGALK---EEVSSHDQEMDKLKEQYDAELQALRES-VEEATKNVEVLASRS 806
Cdd:pfam13166 339 glrraLEAKRKDpfksieldsvdaKIESINDLVAsinELIAKHNEITDNFEEEKNKAKKKLRLHlVEEFKSEIDEYKDKY 418
|
170 180 190
....*....|....*....|....*....|....
gi 568961968 807 NSSEQSQAEADLREKVLKEENEKLQGRIAELERR 840
Cdd:pfam13166 419 AGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1091-1262 |
1.41e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1091 REQMEQMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLEGSYR-SSKEGLVVQMEARIAELEDRLENEERDRANLq 1169
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQlLPLYQELEALEAELAELPERLEELEERLEEL- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1170 lsnRRLERKVKELVMQVDDEHLSLTDQKDQLSLrlkAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSL 1249
Cdd:COG4717 159 ---RELEEELEELEAELAELQEELEELLEQLSL---ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170
....*....|...
gi 568961968 1250 KKGLRLKTLSSKV 1262
Cdd:COG4717 233 ENELEAAALEERL 245
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
618-1075 |
1.59e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.71 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKNQQNIKEERERMREDLEELRVR-HQSQVEETATLQR------RLEESE--GELRKSLEELFQVKME 688
Cdd:pfam05701 50 EIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNlERAQTEEAQAKQDselaklRVEEMEqgIADEASVAAKAQLEVA 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 689 REQHQTEIRDLQdqlsEMHDELDSTKRsedrEKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVS 768
Cdd:pfam05701 130 KARHAAAVAELK----SVKEELESLRK----EYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAHA 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 769 SHDQ------------EMDKLK-----EQYDAELQALRESVEeATKNVEVLASRSNSSEQS-------QAEADLREKVLK 824
Cdd:pfam05701 202 AHLEaeehrigaalarEQDKLNwekelKQAEEELQRLNQQLL-SAKDLKSKLETASALLLDlkaelaaYMESKLKEEADG 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 825 EENEKLQGRiaELERRAAQLQRQMEDVKG------DEAQ----AKETLRkceSEVQQLEEALVHARKEEKEATCARRALE 894
Cdd:pfam05701 281 EGNEKKTST--SIQAALASAKKELEEVKAniekakDEVNclrvAAASLR---SELEKEKAELASLRQREGMASIAVSSLE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 895 KELEQARRELSQVSQEQKE----------LLEKLRDEAEQ--------KEQLRKLKNEMESERWHLDKT---IEKLQKEM 953
Cdd:pfam05701 356 AELNRTKSEIALVQAKEKEarekmvelpkQLQQAAQEAEEakslaqaaREELRKAKEEAEQAKAAASTVesrLEAVLKEI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 954 aDIAEASRTSSLELQKQLGEYKEKNRRELAEmqtqlkekclevekarlaASKMQDELRLKE-EELQDYQRAEEEALTKRq 1032
Cdd:pfam05701 436 -EAAKASEKLALAAIKALQESESSAESTNQE------------------DSPRGVTLSLEEyYELSKRAHEAEELANKR- 495
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568961968 1033 lLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEE 1075
Cdd:pfam05701 496 -VAEAVSQIEEAKESELRSLEKLEEVNREMEERKEALKIALEK 537
|
|
| FapA |
pfam03961 |
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta ... |
762-854 |
1.66e-03 |
|
Flagellar Assembly Protein A beta solenoid domain; This entry represents the C-terminal beta solenoid domain of FapA and its homologs. Members of this family include FapA (flagellar assembly protein A) found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction. This entry shows similarity to pfam03775 suggesting a similar functional role.
Pssm-ID: 461111 [Multi-domain] Cd Length: 272 Bit Score: 41.90 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 762 ALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRsnssEQSQAEADLREKV--LKEENEKLQGRIAELER 839
Cdd:pfam03961 142 KTEIEVGVDFPELKEKLEELEKELEELEEELEKLKKRLKKLPKK----ARGQLPPEKREQLekLLETKNKLSEELEELEE 217
|
90
....*....|....*
gi 568961968 840 RAAQLQRQMEDVKGD 854
Cdd:pfam03961 218 ELKELKEELESLLGE 232
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
636-927 |
1.83e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.82 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 636 IKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDstkr 715
Cdd:COG1340 13 LEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLN---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 716 sedrekgALIEELLQAKQDLQDLLIAKEEQEDLlrkrERELTALKGALKEEVSSHDQEMDKLKE--QYDAELQALRESVE 793
Cdd:COG1340 89 -------ELREELDELRKELAELNKAGGSIDKL----RKEIERLEWRQQTEVLSPEEEKELVEKikELEKELEKAKKALE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 794 EATKNVEVLAsrsnsseqsqaeadlREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKgdeaQAKETLRKcesEVQQLE 873
Cdd:COG1340 158 KNEKLKELRA---------------ELKELRKEAEEIHKKIKELAEEAQELHEEMIELY----KEADELRK---EADELH 215
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568961968 874 EALVHARKEEKEatcarraLEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ 927
Cdd:COG1340 216 KEIVEAQEKADE-------LHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
843-1042 |
2.02e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.79 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 843 QLQRQMEDVKGD--EAQAKETLRKCESEVQQLEEALVHARKEE--------KEATCARRALEKELEQARRELSQVSQEQK 912
Cdd:cd16269 94 KLMEQLEEKKEEfcKQNEEASSKRCQALLQELSAPLEEKISQGsysvpggyQLYLEDREKLVEKYRQVPRKGVKAEEVLQ 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 913 ELLEKLRDEAEQKEQLRKLKNEMESErwhldktiEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEK 992
Cdd:cd16269 174 EFLQSKEAEAEAILQADQALTEKEKE--------IEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSYEEHLRQLKEK 245
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568961968 993 CLEVEKARLAASKMQDELRLKEEElqdyQRAEEEALTKRQLLEQSLKDLE 1042
Cdd:cd16269 246 MEEERENLLKEQERALESKLKEQE----ALLEEGFKEQAELLQEEIRSLK 291
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
621-917 |
2.07e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 42.37 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 621 ELQQQLQLEMKNQQNIKEERERMREDLEELrvrhqsqveETATLQrrleesEGElrksLEELFQvkmERE--QHQTEIRD 698
Cdd:COG0497 169 ALKKELEELRADEAERARELDLLRFQLEEL---------EAAALQ------PGE----EEELEE---ERRrlSNAEKLRE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 699 LqdqLSEMHDELDStkrsedrEKGALIEELLQAKQDLQDLliakeeqedllrkrereltalkgalkeevsshdqemdklk 778
Cdd:COG0497 227 A---LQEALEALSG-------GEGGALDLLGQALRALERL---------------------------------------- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 779 EQYDAELQALRESVEEATKNVEVlASRSNSSEQSQAEADlrekvlkeeneklQGRIAELERRAAQLQRQMEDVKGDEAQA 858
Cdd:COG0497 257 AEYDPSLAELAERLESALIELEE-AASELRRYLDSLEFD-------------PERLEEVEERLALLRRLARKYGVTVEEL 322
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 859 KETLRKCESEVQQLEEAlvHARKEEKEAtcARRALEKELEQARRELSQVSQEQKELLEK 917
Cdd:COG0497 323 LAYAEELRAELAELENS--DERLEELEA--ELAEAEAELLEAAEKLSAARKKAAKKLEK 377
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
621-1042 |
2.07e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.43 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 621 ELQQQLQLEmkNQQNIKEERERMREDLEELRVRHQS-------QVEETATLQRRLEESEGELRKSLEELF---------- 683
Cdd:pfam07111 241 ELERQELLD--TMQHLQEDRADLQATVELLQVRVQSlthmlalQEEELTRKIQPSDSLEPEFPKKCRSLLnrwrekvfal 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 --QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSED------REKGALIEELLQAKQDLQDLLI----AKEEQEDLLRK 751
Cdd:pfam07111 319 mvQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAilqralQDKAAEVEVERMSAKGLQMELSraqeARRRQQQQTAS 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 752 RERELTALKGALKEEVSSHDQEMDKLkEQYDAELQALRESVEEATKNVEV---LASRSNSSEQSQAEA----DLREKVLK 824
Cdd:pfam07111 399 AEEQLKFVVNAMSSTQIWLETTMTRV-EQAVARIPSLSNRLSYAVRKVHTikgLMARKVALAQLRQEScpppPPAPPVDA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 825 EENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKEtlrKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARrel 904
Cdd:pfam07111 478 DLSLELEQLREERNRLDAELQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVAR--- 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 905 sQVSQEQKELLEKLRDEAEQKEQLrklknemeserwhldktieklqkemadiaeasrtSSLELQKQLGEYKEKNRRELAE 984
Cdd:pfam07111 552 -QGQQESTEEAASLRQELTQQQEI----------------------------------YGQALQEKVAEVETRLREQLSD 596
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 985 MQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTKR-QLLEQSLKDLE 1042
Cdd:pfam07111 597 TKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEgQRLARRVQELE 655
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
618-808 |
2.08e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.67 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKNQQNIKEERERMREDLEELRVRHQSQVEETATLQrrLEESEGELRKSLEELFQVKMEREQHQTEIR 697
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEGLDSSTALTLE--LEELRQERDLLREEIQKLRGQIQQLRTELQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 698 DLQDQLSEMHDELdstkRSEDREKGALIEELLQAKQDLQDLLiakEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKL 777
Cdd:pfam09787 79 ELEAQQQEEAESS----REQLQELEEQLATERSARREAEAEL---ERLQEELRYLEEELRRSKATLQSRIKDREAEIEKL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568961968 778 KEQ-------------YDAELQALRESVEEATKNVEVLASRSNS 808
Cdd:pfam09787 152 RNQltsksqssssqseLENRLHQLTETLIQKQTMLEALSTEKNS 195
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
822-1163 |
2.24e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 42.36 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 822 VLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESE-------------VQQLEEALVHARKEEKEATC 888
Cdd:pfam13166 86 TLGEESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEADfldecwkkikrkkNSALSEALNGFKYEANFKSR 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 889 ARRALEKE---------LEQARRELSQVSQEQKELLEKLR------DEAEQKEQL-RKLKNEmeserwhlDKTIEKLQKE 952
Cdd:pfam13166 166 LLREIEKDnfnagvllsDEDRKAALATVFSDNKPEIAPLTfnvidfDALEKAEILiQKVIGK--------SSAIEELIKN 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 953 --MAD-------IAEASRTSSL--------ELQKQLGEYKEKnrrELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEE 1015
Cdd:pfam13166 238 pdLADwveqgleLHKAHLDTCPfcgqplpaERKAALEAHFDD---EFTEFQNRLQKLIEKVESAISSLLAQLPAVSDLAS 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1016 ELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKshlKDDRSRLIK---------QMEDKVSQLE--IELEEERTnaDLLS 1084
Cdd:pfam13166 315 LLSAFELDVEDIESEAEVLNSQLDGLRRALEAK---RKDPFKSIEldsvdakieSINDLVASINelIAKHNEIT--DNFE 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1085 ERITWSREQME-----QMRSELLQEKAAKQDLECDKISLERQNKDLKSRIIHLegsyrsskeglvvqmEARIAELEDRLE 1159
Cdd:pfam13166 390 EEKNKAKKKLRlhlveEFKSEIDEYKDKYAGLEKAINSLEKEIKNLEAEIKKL---------------REEIKELEAQLR 454
|
....
gi 568961968 1160 NEER 1163
Cdd:pfam13166 455 DHKP 458
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
821-922 |
2.25e-03 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 39.73 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 821 KVLKEENEKLQGRIAELERRAAQLQRQmedvkgdEAQAKETLRKCESEVQQ-LEEALVHARKEEKEA-TCARRALEKELE 898
Cdd:cd06503 26 KALDEREEKIAESLEEAEKAKEEAEEL-------LAEYEEKLAEARAEAQEiIEEARKEAEKIKEEIlAEAKEEAERILE 98
|
90 100
....*....|....*....|....
gi 568961968 899 QARRELsqvSQEQKELLEKLRDEA 922
Cdd:cd06503 99 QAKAEI---EQEKEKALAELRKEV 119
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
742-893 |
2.27e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 742 KEEQEDLLRKRERELTALKGALKEEVSshdqemDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREK 821
Cdd:PRK12705 32 AKEAERILQEAQKEAEEKLEAALLEAK------ELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLEN 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961968 822 VLKEENEKLQGRIAELERRAAQLQRQMEDVKG--DEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRAL 893
Cdd:PRK12705 106 QLEEREKALSARELELEELEKQLDNELYRVAGltPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQ 179
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
659-803 |
2.60e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 659 EETATLQRRLEESEGELRKSlEELFQVKME----REQHQTEIRD-------LQDQLSEMHDELDSTKRSEDREKGALIEE 727
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKK-EALLEAKEEihklRNEFEKELRErrnelqkLEKRLLQKEENLDRKLELLEKREEELEKK 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568961968 728 LLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSShdQEMDKLKEQYDAELQAL-RESVEEATKNVEVLA 803
Cdd:PRK12704 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKE--ILLEKVEEEARHEAAVLiKEIEEEAKEEADKKA 190
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
608-821 |
2.61e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 608 LLDQKNKLILEVSELQQQLQLEMKNQQNIKEERERMREDLEELrVRHQSQVEETATLQRRLEESEGELRKSLEEL----- 682
Cdd:PRK11281 71 LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE-TRETLSTLSLRQLESRLAQTLDQLQNAQNDLaeyns 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 683 ----FQVKMEREqhQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIeELLQAKQDLQDLLIAKEEQE--------DLLR 750
Cdd:PRK11281 150 qlvsLQTQPERA--QAALYANSQRLQQIRNLLKGGKVGGKALRPSQR-VLLQAEQALLNAQNDLQRKSlegntqlqDLLQ 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568961968 751 KReRELTALKGALKEEvsshdqemdklkeqydaELQALRESVEEatKNVEvlasrsnSSEQSQAEADLREK 821
Cdd:PRK11281 227 KQ-RDYLTARIQRLEH-----------------QLQLLQEAINS--KRLT-------LSEKTVQEAQSQDE 270
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1092-1254 |
2.84e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1092 EQMEQMRSELLQEKAA--------KQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGlVVQMEARIAELEDRLENEER 1163
Cdd:pfam07888 37 EECLQERAELLQAQEAanrqrekeKERYKRDREQWERQRRELESRVAELKEELRQSREK-HEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1164 DRANLQLSNRRLERKVKELVMQVddehlsltdqkdqlslrlKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQ 1243
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDI------------------KTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ 177
|
170
....*....|.
gi 568961968 1244 GQLNSLKKGLR 1254
Cdd:pfam07888 178 AKLQQTEEELR 188
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
630-906 |
2.84e-03 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 41.69 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 630 MKNQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRDLQDQLSEMHDE 709
Cdd:COG4251 1 LLLLALLLLLLLLLLLLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 710 LDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALR 789
Cdd:COG4251 81 LLLLLLLELALVLLALLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLRLALALLLLLLLLLLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 790 ESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEV 869
Cdd:COG4251 161 LLLLALILALLLAALAELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLLLL 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568961968 870 QQLEEALVHARKEEKEATCARRALEK-------ELEQARRELSQ 906
Cdd:COG4251 241 LILLLLLLILVLELLELRLELEELEEeleertaELERSNEELEQ 284
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
854-957 |
3.22e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 41.59 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 854 DEAQAKETLRKCESEVQQLEEAlvharkEEKeatcaRRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKN 933
Cdd:PRK05431 12 EAVKEALAKRGFPLDVDELLEL------DEE-----RRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80
|
90 100
....*....|....*....|....
gi 568961968 934 EMESerwhLDKTIEKLQKEMADIA 957
Cdd:PRK05431 81 EIKA----LEAELDELEAELEELL 100
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
684-1044 |
3.28e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 684 QVKMEREQHQTEIRDLQDQLSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELtalkgal 763
Cdd:COG4372 3 RLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSEL------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 764 keevsshdQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQ 843
Cdd:COG4372 76 --------EQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAE 923
Cdd:COG4372 148 REEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 924 QKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAA 1003
Cdd:COG4372 228 EAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAAL 307
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 568961968 1004 SKMQDELRLKEEELQDYQRAEEEALTKRQLLEQSLKDLEYE 1044
Cdd:COG4372 308 SLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
812-976 |
3.57e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 812 SQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEdvkgdeaQAKETLRKCESEVQQLEEALvharkEEKEATCARr 891
Cdd:COG2433 379 EEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIR-------RLEEQVERLEAEVEELEAEL-----EEKDERIER- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 892 aLEKELEQARRELsqvsqeqkelleklRDEAEQKEQLRKLKNEmeserwhldktIEKLQKEMADIAEASRtsslELQKQL 971
Cdd:COG2433 446 -LERELSEARSEE--------------RREIRKDREISRLDRE-----------IERLERELEEERERIE----ELKRKL 495
|
....*
gi 568961968 972 GEYKE 976
Cdd:COG2433 496 ERLKE 500
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
829-966 |
3.74e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 40.27 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 829 KLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCAR----------RALEKELE 898
Cdd:pfam13851 30 SLKEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKDKQSLKNLKarlkvlekelKDLKWEHE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 899 QARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMeserwhLDKTIEKLQkEMADIAEASRTSSLE 966
Cdd:pfam13851 110 VLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLL------LEKKLQALG-ETLEKKEAQLNEVLA 170
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1015-1249 |
3.79e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1015 EELQDYQRAEEEALTKRQLLEQSLKDLEYELEAKSHL-----KDDRSRLIKQMEDKVSQLEIELEEERTNADLlSERITW 1089
Cdd:COG3206 101 DKLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSNVieisyTSPDPELAAAVANALAEAYLEQNLELRREEA-RKALEF 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1090 SREQMEQMRSELLQEKAAKQDL--ECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVvQMEARIAELEDRLENEE----- 1162
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELA-EAEARLAALRAQLGSGPdalpe 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1163 --RDRANLQLSNR--RLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMgv 1238
Cdd:COG3206 259 llQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQL-- 336
|
250
....*....|.
gi 568961968 1239 nEQLQGQLNSL 1249
Cdd:COG3206 337 -AQLEARLAEL 346
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
623-1253 |
4.11e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 41.74 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 623 QQQLQLEMKNQQNIKEereRMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEElfqvkmereqhqTEIRDLQDQ 702
Cdd:PTZ00440 896 KQLVEHLLNNKIDLKN---KLEQHMKIINTDNIIQKNEKLNLLNNLNKEKEKIEKQLSD------------TKINNLKMQ 960
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 703 LSEMHDELDSTKRSEDREKGALIEELLQAKQDLQDLliaKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYD 782
Cdd:PTZ00440 961 IEKTLEYYDKSKENINGNDGTHLEKLDKEKDEWEHF---KSEIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEKG 1037
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 783 AELqalRESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETL 862
Cdd:PTZ00440 1038 KEI---EEKVDQYISLLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIKNKSHEHVVNA 1114
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 863 RK---------------CESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQ--- 924
Cdd:PTZ00440 1115 DKeknkqtehynkkkksLEKIYKQMEKTLKELENMNLEDITLNEVNEIEIEYERILIDHIVEQINNEAKKSKTIMEEies 1194
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 925 -KEQLRKLKNEMESERwhLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEK--NRRELAEMQTQLKEKCLEVEKARL 1001
Cdd:PTZ00440 1195 yKKDIDQVKKNMSKER--NDHLTTFEYNAYYDKATASYENIEELTTEAKGLKGEanRSTNVDELKEIKLQVFSYLQQVIK 1272
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1002 AASKMQDELRLKEEELQDYQRAEEEALTKrQLLEQSLKDLEYELEAKSHLKDDrSRLIKQMEDKVSQLEI---------- 1071
Cdd:PTZ00440 1273 ENNKMENALHEIKNMYEFLISIDSEKILK-EILNSTKKAEEFSNDAKKELEKT-DNLIKQVEAKIEQAKEhknkiygsle 1350
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1072 --ELEEERTNADLLSERITWSREQMEQMRSELLQEKaAKQDLEC-------DKISLERQNKDLKSR------IIHLEGSY 1136
Cdd:PTZ00440 1351 dkQIDDEIKKIEQIKEEISNKRKEINKYLSNIKSNK-EKCDLHVrnasrgkDKIDFLNKHEAIEPSnskevnIIKITDNI 1429
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1137 RSSKEGL--VVQMEARIAELEDRLENEERDRANLQLSNRRLERKVK---------ELVMQVDDEHLSLTDQKDQLSLRLK 1205
Cdd:PTZ00440 1430 NKCKQYSneAMETENKADENNDSIIKYEKEITNILNNSSILGKKTKlekkkkeatNIMDDINGEHSIIKTKLTKSSEKLN 1509
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 568961968 1206 AMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKGL 1253
Cdd:PTZ00440 1510 QLNEQPNIKREGDVLNNDKSTIAYETIQYNLGRVKHNLLNILNIKDEI 1557
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
619-941 |
4.20e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 41.24 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 619 VSELQQQLQLEMKNQQNIKEERERMREDLEELrvrHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIRD 698
Cdd:pfam03528 10 VAELEKENAEFYRLKQQLEAEFNQKRAKFKEL---YLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAVATV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 699 LQDQLSEMHDELDSTKRSEDREKGALIEELLQaKQDLQDLLIAKEEQEDLLRKRE---RELTALKGALKEEVSSHDQEMD 775
Cdd:pfam03528 87 SENTKQEAIDEVKSQWQEEVASLQAIMKETVR-EYEVQFHRRLEQERAQWNQYREsaeREIADLRRRLSEGQEEENLEDE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 776 KLKEQYDAElqALRESVEEATKNVEVLASRSNSSEQSQAEadLREKVLKEENEKLQGRIA---ELERRAAQLQRQ----M 848
Cdd:pfam03528 166 MKKAQEDAE--KLRSVVMPMEKEIAALKAKLTEAEDKIKE--LEASKMKELNHYLEAEKScrtDLEMYVAVLNTQksvlQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 849 EDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQL 928
Cdd:pfam03528 242 EDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMESVLTSEQLRQVEEIKKKDQEEHKRART 321
|
330
....*....|...
gi 568961968 929 RKLKNEMESERWH 941
Cdd:pfam03528 322 HKEKETLKSDREH 334
|
|
| COG4646 |
COG4646 |
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair]; |
635-1252 |
4.37e-03 |
|
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair];
Pssm-ID: 443684 [Multi-domain] Cd Length: 1711 Bit Score: 41.77 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 635 NIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKsleelfqvKMEREQHQTEIRDLQDQLSEMHDELDSTK 714
Cdd:COG4646 993 HIQFEKIPASGERQEEILEEQIAEILKAIKELKAVVRKRFTVK--------QLESTKKLGAGKLKQLDLLALKDLDVPWE 1064
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 715 RSED-----REKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALR 789
Cdd:COG4646 1065 PLDVdqlfgRGSRQGNNNFLVTKMRNVAGLAFSDAAKLSDYFGKQRYRDELTAGKGVVVATGTDESNLMYELYTAQAYLQ 1144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 790 ESVEEATKNVEVLASRSNSSEQSQAEADLREKVLKEENEKLQGRIAELERRAAQLQRQMEDvKGDEAQAKETLRKCESEV 869
Cdd:COG4646 1145 LLLLGKQGLTNFDTWASTLEELVTAAELAPERTAYRANTREAKAVNLPEEDVMIKEAEDAK-TADELLLPTPEKISGGVA 1223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 870 QQLEEALVHARKEEKEATCARRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEkl 949
Cdd:COG4646 1224 TKPSEVQKELLEELEERAAIVRKNDGEPDRDNMLVITDDGRKAALDQRLDIKTLPDDEGSLVALCVTNIDRIWEDNPE-- 1301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 950 qkEMADIAEASRTSSLELQKQLGEYKEKNRRELAEMQTQLKEKCLEVEKARLAAskmqDELRLKEEELQDYQRAEEEALT 1029
Cdd:COG4646 1302 --SKLTQLVFCDLSTPKGDGTFNDLEDIREKLIEEEIAELEIAFIHLALDDQEK----AELFARDRLGAVEKLRISTAKM 1375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1030 KRQLLEQSLKDLEYELEAKSHLKDDRSRliKQMEDKVSQLEIELEEERTNADLLSERITWsreqmeQMRSELLQEKAAKQ 1109
Cdd:COG4646 1376 GAGTNVRLLLEATHDLDVPWRPRDAEQR--AGRGRRQGNENEEVEEIRYVTENTFDAYLW------QAAETKQKFIAQIM 1447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1110 DLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEAriaeLEDRLENEERDRANLQLSNRRLERKVKELVMQVD-D 1188
Cdd:COG4646 1448 TSKSPVRSLEDVDEAALSYAERKALAAGRPKEKEKMDLDI----EVLKLKLLDAAALEQLYAEEDKLRKSYLDEEEALeE 1523
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568961968 1189 EHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMGVNEQLQGQLNSLKKG 1252
Cdd:COG4646 1524 RIEAATKDLRLARAASQEEADEQESASKEAAAGEKKAAAAELLAALQAAGLIVLDGGRTPRGEK 1587
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
891-1005 |
4.55e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.48 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 891 RALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERWHLDKTIEKLQKEmadiAEASRTSSLELQKQ 970
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEK----AAETSQERKQKRKE 220
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568961968 971 LGEyKEKNRRELAEMQT------QLKEKCLEVEKARLAASK 1005
Cdd:PRK11448 221 ITD-QAAKRLELSEEETrilidqQLRKAGWEADSKTLRFSK 260
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
618-969 |
4.83e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 40.79 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 618 EVSELQQQLQLEMKnQQNIKEERERMREDLEELRVRHQSQVEETATLQRRLEESEGELRKSLEELFQVKMEREQHQTEIR 697
Cdd:pfam15558 22 RMRELQQQAALAWE-ELRRRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREERRRADRREKQVIEKESRWREQA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 698 DLQDQLSEMHDELdstKRSEDREKGALIEELLQAKqdlQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKL 777
Cdd:pfam15558 101 EDQENQRQEKLER---ARQEAEQRKQCQEQRLKEK---EEELQALREQNSLQLQERLEEACHKRQLKEREEQKKVQENNL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 778 KEQydAELQALResVEEATKNVEVLASRSNSSEQS-QAEADLREKVLKEENEKLQGRIAELErraAQLQRqmedvkgdea 856
Cdd:pfam15558 175 SEL--LNHQARK--VLVDCQAKAEELLRRLSLEQSlQRSQENYEQLVEERHRELREKAQKEE---EQFQR---------- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 857 qAKETLRKCESEVQQLEEALVharkeekeatcarRALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEME 936
Cdd:pfam15558 238 -AKWRAEEKEEERQEHKEALA-------------ELADRKIQQARQVAHKTVQDKAQRARELNLEREKNHHILKLKVEKE 303
|
330 340 350
....*....|....*....|....*....|....*
gi 568961968 937 SE--RWHLDKTIEKLQKEMADIAEASRTSSLELQK 969
Cdd:pfam15558 304 EKchREGIKEAIKKKEQRSEQISREKEATLEEARK 338
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
793-951 |
4.92e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 40.43 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 793 EEATKNVEVLASRSNSSEQSQAEADLREKVlkeenEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQL 872
Cdd:cd22656 94 AEILELIDDLADATDDEELEEAKKTIKALL-----DDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 873 --EEALVHARKEEKEatcarraLEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQ--------LRKLKNEMESERWHL 942
Cdd:cd22656 169 ltDEGGAIARKEIKD-------LQKELEKLNEEYAAKLKAKIDELKALIADDEAKLAaalrliadLTAADTDLDNLLALI 241
|
....*....
gi 568961968 943 DKTIEKLQK 951
Cdd:cd22656 242 GPAIPALEK 250
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
629-921 |
5.33e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 629 EMKNQQNIKEERERMREDLEELRVRHQSQVEetatlqrRLEESEGELRKSLEELFQvkmereqhqtEIRDLQDQLSEMHD 708
Cdd:COG2433 393 EEPEAEREKEHEERELTEEEEEIRRLEEQVE-------RLEAEVEELEAELEEKDE----------RIERLERELSEARS 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 709 ELDSTKRsEDREKGALIEELLQAKQDLQDLliaKEEQEDLLRKREReltaLKGALKEEvssHDQEMDKLKEQYDAELQAL 788
Cdd:COG2433 456 EERREIR-KDREISRLDREIERLERELEEE---RERIEELKRKLER----LKELWKLE---HSGELVPVKVVEKFTKEAI 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 789 REsVEEATKNVE---VLASRSNSSEQSQAEadlrekvlkeeneklqgRIAELERRAAQLQRQMEDVKGDEAQAKE--TLR 863
Cdd:COG2433 525 RR-LEEEYGLKEgdvVYLRDASGAGRSTAE-----------------LLAEAGPRAVIVPGELSEAADEVLFEEGipVLP 586
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568961968 864 KCESEVQQLEEaLVHARKEEKEAtcARRALEKELEQARRElsqvsqEQKELLEKLRDE 921
Cdd:COG2433 587 AEDVTIQEVDD-LAVVDEEELEA--AIEDWEERAEERRRE------KKAEMLERLISE 635
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
754-921 |
5.42e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 41.20 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 754 RELTALKGALKEEVSSHDQEMDKLKEQYDA------ELQALRESVEEATKNVEVLASRSNSSEQsQAEADLRE------- 820
Cdd:pfam13166 279 DEFTEFQNRLQKLIEKVESAISSLLAQLPAvsdlasLLSAFELDVEDIESEAEVLNSQLDGLRR-ALEAKRKDpfksiel 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 821 KVLKEENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLR-----KCESEVQQLEEALvhaRKEEKEATcarrALEK 895
Cdd:pfam13166 358 DSVDAKIESINDLVASINELIAKHNEITDNFEEEKNKAKKKLRlhlveEFKSEIDEYKDKY---AGLEKAIN----SLEK 430
|
170 180
....*....|....*....|....*.
gi 568961968 896 ELEQARRELSQVSQEQKELLEKLRDE 921
Cdd:pfam13166 431 EIKNLEAEIKKLREEIKELEAQLRDH 456
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
946-1220 |
5.61e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 946 IEKLQKEMADIAEASRTSSLELQKQLGEYKEKnRRELAEMQTQLKEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEE 1025
Cdd:COG4372 40 LDKLQEELEQLREELEQAREELEQLEEELEQA-RSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1026 EALTKRQLLEQSLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEIELEEERTNADLLSERITwsREQMEQMRSELLQEK 1105
Cdd:COG4372 119 ELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEA--EQALDELLKEANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1106 AAKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQ 1185
Cdd:COG4372 197 EKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEE 276
|
250 260 270
....*....|....*....|....*....|....*
gi 568961968 1186 VDDEHLSLTDQKDQLSLRLKAMKRQVEEAEEEIDR 1220
Cdd:COG4372 277 ELEIAALELEALEEAALELKLLALLLNLAALSLIG 311
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
763-921 |
5.86e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 763 LKEEVSSHDQEMDKLKEQYDAELQALreSVEEATKN--VEVLASRSNSSEQSQAEadlREKvLKEENEKLQGRIAELERR 840
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLL--SLERQGNQdlQDSVANLRASLSAAEAE---RSR-LQALLAELAGAGAAAEGR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 841 AAQLQRQMEDVK--GDEAQAK--------ETLRkceSEVQQLEEALVHARKEEKEATCARRALEKELEQArreLSQVSQE 910
Cdd:PRK09039 118 AGELAQELDSEKqvSARALAQvellnqqiAALR---RQLAALEAALDASEKRDRESQAKIADLGRRLNVA---LAQRVQE 191
|
170
....*....|.
gi 568961968 911 qkelLEKLRDE 921
Cdd:PRK09039 192 ----LNRYRSE 198
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
821-1243 |
6.60e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.83 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 821 KVLKEENEKLQGRIAELERRAAQLQrqmeDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKE---L 897
Cdd:pfam05622 3 SEAQEEKDELAQRCHELDQQVSLLQ----EEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQLQEEnfrL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 898 EQARRELSQVSQEQ-KELLE-KLRDEAEQK--EQLRKLKNEMESERWHLDK------TIEKLQKEMADIAEasrtssleL 967
Cdd:pfam05622 79 ETARDDYRIKCEELeKEVLElQHRNEELTSlaEEAQALKDEMDILRESSDKvkkleaTVETYKKKLEDLGD--------L 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 968 QKQLGEYKEKNrrelaemQTQLKEKC-LEVEKARLAASKMQdeLRLKEEELQDYQRaeeealtkrQLLEQSLKDLEYELE 1046
Cdd:pfam05622 151 RRQVKLLEERN-------AEYMQRTLqLEEELKKANALRGQ--LETYKRQVQELHG---------KLSEESKKADKLEFE 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1047 akshlkddrsrlIKQMEDKVSQLEIELEEertnadLLSERITWsREQMEQMRSELLQEKAAKQ--------DLECDKISL 1118
Cdd:pfam05622 213 ------------YKKLEEKLEALQKEKER------LIIERDTL-RETNEELRCAQLQQAELSQadallspsSDPGDNLAA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 1119 ERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKD 1198
Cdd:pfam05622 274 EIMPAEIREKLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGS 353
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 568961968 1199 QlslrlkamkrqveeAEEEIdrleSSKKKLQRELEEQMGVNEQLQ 1243
Cdd:pfam05622 354 K--------------AEDSS----LLKQKLEEHLEKLHEAQSELQ 380
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
786-961 |
6.69e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 40.77 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 786 QALRESVEEAtknVEVlasrsnsSEQSQaEADLREKVLKEENEKlQGRiaeLERraaqlQRqMEDVKGDEAQAKETLR-K 864
Cdd:PTZ00491 647 DSLQKSVQLA---IEI-------TTKSQ-EAAARHQAELLEQEA-RGR---LER-----QK-MHDKAKAEEQRTKLLElQ 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 865 CESEVQQLEEALVHARKEEKEATCArrALEKELEQARRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNEMEserwhldk 944
Cdd:PTZ00491 706 AESAAVESSGQSRAEALAEAEARLI--EAEAEVEQAELRAKALRIEAEAELEKLRKRQELELEYEQAQNELE-------- 775
|
170
....*....|....*..
gi 568961968 945 tIEKlQKEMADIaEASR 961
Cdd:PTZ00491 776 -IAK-AKELADI-EATK 789
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
825-1030 |
6.79e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 40.35 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 825 EENEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVHARKEEKEATCARRALEKELEQARREL 904
Cdd:PRK07735 2 DPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 905 SQVSQEQKELLEKLRDEAEQKEQLRKLKNEMESERwhLDKTIEKLQKEMADIAEASRTSSLELQKQLGEYKEKNRRELAE 984
Cdd:PRK07735 82 TEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGT--EEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568961968 985 MQTQL-KEKCLEVEKARLAASKMQDELRLKEEELQDYQRAEEEALTK 1030
Cdd:PRK07735 160 TDKEKaKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAK 206
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
828-1093 |
6.97e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 6.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 828 EKLQGRIAELERRAAQLQR--QMEDVKGDEAQAKETLRkcesevQQLEEALVHARKEEKEATCArrALEKELEQARREL- 904
Cdd:PRK10929 48 EALQSALNWLEERKGSLERakQYQQVIDNFPKLSAELR------QQLNNERDEPRSVPPNMSTD--ALEQEILQVSSQLl 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 905 ---SQVSQEQ---KELLEKLRDEAEQKEQLRKLKNEMESERWHLDKT--------IEKLQKEMAdiAEASRTSSLELQkQ 970
Cdd:PRK10929 120 eksRQAQQEQdraREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPntplaqaqLTALQAESA--ALKALVDELELA-Q 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 971 LgeyKEKNRRELAEMQTQLKEKCLEVEKARLAASKMQ-DELRlkeeelqdyQRAEEEALTKRQLLEQSLKDLEYELEAKS 1049
Cdd:PRK10929 197 L---SANNRQELARLRSELAKKRSQQLDAYLQALRNQlNSQR---------QREAERALESTELLAEQSGDLPKSIVAQF 264
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568961968 1050 HLKDDRSRLIKQMEDKVSQleIELEEERTNADLLSERITWS--REQ 1093
Cdd:PRK10929 265 KINRELSQALNQQAQRMDL--IASQQRQAASQTLQVRQALNtlREQ 308
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
732-925 |
7.45e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.45 E-value: 7.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 732 KQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDaELQALRESVEEATKNVEVLASRSNSSEQ 811
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQN-TLNQLNKQIDELNASIAKLEQQQAAQER 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 812 S---QAEADLR-------EKVLKEE---------------NEKLQGRIAELERRAAQLQRQMEDVKGDEAQAKETLRKCE 866
Cdd:PRK11637 125 LlaaQLDAAFRqgehtglQLILSGEesqrgerilayfgylNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQ 204
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 867 SEVQQLEEALVhARKeeKEATcarrALEKELEQARRELSQVSQEQKELLEKL-RDEAEQK 925
Cdd:PRK11637 205 AQQQKLEQARN-ERK--KTLT----GLESSLQKDQQQLSELRANESRLRDSIaRAEREAK 257
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
750-1027 |
7.76e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 750 RKRERELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVlASRSNSSEQSQAEADLREKV--LKEEN 827
Cdd:NF041483 371 RTAEEVLTKASEDAKATTRAAAEEAERIRREAEAEADRLRGEAADQAEQLKG-AAKDDTKEYRAKTVELQEEArrLRGEA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 828 EKLQGR-IAELERRAAQLQRQ-MEDVKGDEAQAKETLRKCESEVQQLEEALV----HARKEEKE-ATCARRALEKELEQA 900
Cdd:NF041483 450 EQLRAEaVAEGERIRGEARREaVQQIEEAARTAEELLTKAKADADELRSTATaeseRVRTEAIErATTLRRQAEETLERT 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 901 RRELSQVSQEQKELLEKLRDEAEQKEQLRKLKNE--MESERWHLDKTIEKLQKEmadiAEASRTSSLELQKQLGEYKEKN 978
Cdd:NF041483 530 RAEAERLRAEAEEQAEEVRAAAERAARELREETEraIAARQAEAAEELTRLHTE----AEERLTAAEEALADARAEAERI 605
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 568961968 979 RRELAEMQTQLKEKCLEVEKArLAASKMQDELRLKEEELQDYQRAEEEA 1027
Cdd:NF041483 606 RREAAEETERLRTEAAERIRT-LQAQAEQEAERLRTEAAADASAARAEG 653
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
966-1032 |
9.28e-03 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 38.66 E-value: 9.28e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568961968 966 ELQKQLGEYKEKNRRELAEMQTQL--KEKCLEVEKARLAAS---KMQDELRLKEEELQDYQRAEEEALTKRQ 1032
Cdd:COG2825 43 AAQKKLEKEFKKRQAELQKLEKELqaLQEKLQKEAATLSEEerqKKERELQKKQQELQRKQQEAQQDLQKRQ 114
|
|
| PLN02372 |
PLN02372 |
violaxanthin de-epoxidase |
844-928 |
9.38e-03 |
|
violaxanthin de-epoxidase
Pssm-ID: 215212 [Multi-domain] Cd Length: 455 Bit Score: 40.21 E-value: 9.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 844 LQRQMEDVKGDEaqaKETLRKCESEVQQLEEALVHARKEEkEATCARRALEKELEQARRE----LSQVSQEQKELLEKLR 919
Cdd:PLN02372 363 LERLEKDVEEGE---KTIVKEARQIEEELEKEVEKLGKEE-ESLFKRVALEEGLKELEQDeenfLKELSKEEKELLEKLK 438
|
....*....
gi 568961968 920 DEAEQKEQL 928
Cdd:PLN02372 439 MEASEVEKL 447
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
898-1042 |
9.99e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568961968 898 EQARRELSQVSQEQKEL---LEKLRDEAEQK-EQLRKLKNEMESERwhldktieklqkemadiaeasrtssLELQKQLGE 973
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELiasLEELERELEQKaEEAEALLKEAEKLK-------------------------EELEEKKEK 559
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568961968 974 YKEKNRRELAEMQTQLKEKcleVEKARLAASKMQDELRLKEEElQDYQRAEEEALTKRQLLEQSLKDLE 1042
Cdd:PRK00409 560 LQEEEDKLLEEAEKEAQQA---IKEAKKEADEIIKELRQLQKG-GYASVKAHELIEARKRLNKANEKKE 624
|
|
| |
