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Conserved domains on  [gi|568909977|ref|XP_006530046|]
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ciliary rootlet coiled-coil protein 2 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 965-1566 5.56e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 5.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  965 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 1044
Cdd:COG1196   213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1045 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 1124
Cdd:COG1196   289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1125 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1204
Cdd:COG1196   369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1205 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1284
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1285 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1364
Cdd:COG1196   516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1365 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1444
Cdd:COG1196   587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1445 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1524
Cdd:COG1196   660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 568909977 1525 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1566
Cdd:COG1196   738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 431-1248 2.58e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 111.69  E-value: 2.58e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   431 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 510
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   511 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 587
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   588 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 667
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   668 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 745
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   746 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 814
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   815 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 878
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   879 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 958
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   959 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 1038
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1039 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 1118
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1119 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1198
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 568909977  1199 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1248
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Rootletin super family cl23727
Ciliary rootlet component, centrosome cohesion;
109-257 2.27e-13

Ciliary rootlet component, centrosome cohesion;


The actual alignment was detected with superfamily member pfam15035:

Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 70.45  E-value: 2.27e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   109 ADAEREELASRCHMVSQRLQARLDTTEARLRKSELEHSMDLEEALSRLEASQQRSMGLSQVNTLLRQQLEHMQKANDTLA 188
Cdd:pfam15035   33 SELEQQLLEKTSELEKTELLLRKLTLEPRLQRLEREHSADLEEALIRLEEERQRSESLSQVNSLLREQLEQASRANEALR 112

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977   189 RELTRATHSLVHLQRKLELQESQ----------RLSLRQPRdILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTA 257
Cdd:pfam15035  113 EDLQKLTNDWERAREELEQKESEwrkeeeafneYLSSEHSR-LLSLWREVVAVRRQFTELKTATERDLSELKTEFSRTS 190
COG4913 super family cl25907
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1481-1683 7.05e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


The actual alignment was detected with superfamily member COG4913:

Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 7.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1481 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1560
Cdd:COG4913   232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1561 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1636
Cdd:COG4913   309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 568909977 1637 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1683
Cdd:COG4913   389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 965-1566 5.56e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 5.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  965 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 1044
Cdd:COG1196   213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1045 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 1124
Cdd:COG1196   289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1125 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1204
Cdd:COG1196   369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1205 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1284
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1285 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1364
Cdd:COG1196   516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1365 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1444
Cdd:COG1196   587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1445 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1524
Cdd:COG1196   660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 568909977 1525 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1566
Cdd:COG1196   738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 431-1248 2.58e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 111.69  E-value: 2.58e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   431 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 510
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   511 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 587
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   588 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 667
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   668 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 745
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   746 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 814
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   815 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 878
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   879 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 958
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   959 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 1038
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1039 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 1118
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1119 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1198
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 568909977  1199 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1248
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 434-995 1.79e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.49  E-value: 1.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  434 ERRQQREQELRL-RLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 512
Cdd:COG1196   220 EELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  513 LETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 592
Cdd:COG1196   300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  593 ALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 672
Cdd:COG1196   380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  673 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcghlEQKQDHLEKQVVLLGQENAQLREQVGQVtnkkQALE 752
Cdd:COG1196   460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-----AEADYEGFLEGVKAALLLAGLRGLAGAV----AVLI 530

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  753 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 832
Cdd:COG1196   531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  833 EQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 912
Cdd:COG1196   611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  913 SLAEEKEAAARWMEQQKELLTRSAADRE--ALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELE 990
Cdd:COG1196   691 EELELEEALLAEEEEERELAEAEEERLEeeLEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770


                  ....*
gi 568909977  991 RARQE 995
Cdd:COG1196   771 RLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 949-1684 2.12e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 102.06  E-value: 2.12e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   949 LKQERDESLLQLEHeMQQALslkdaeksllsKELSGAHRELERARQEAQNQQVQAEatvttmtkELRTLQVQFEEA-IST 1027
Cdd:TIGR02168  170 YKERRKETERKLER-TRENL-----------DRLEDILNELERQLKSLERQAEKAE--------RYKELKAELRELeLAL 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1028 HQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH 1107
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1108 SNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQ 1187
Cdd:TIGR02168  310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1188 RKRQEVSDLQAQVSR------DAQHRQKNLQESLELQRQVAEAQAAHDgVQKEVLGLRQKLAEVEASGETRAKQLEGHLC 1261
Cdd:TIGR02168  390 QLELQIASLNNEIERlearleRLEDRRERLQQEIEELLKKLEEAELKE-LQAELEELEEELEELQEELERLEEALEELRE 468

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1262 ESQRAEQTLQAELcritRKLQEASNQADSLQRSLDNACSRVHVLEQELAKA-----------------EGARCNAEAQLG 1324
Cdd:TIGR02168  469 ELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvdEGYEAAIEAALG 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1325 -RLWSTLCSGLGQSRNLLASPKRPHS-------PTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPK---------SE 1387
Cdd:TIGR02168  545 gRLQAVVVENLNAAKKAIAFLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllGG 624

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1388 VIDVAFVRDALRDLVQ------------------GLLEAQQERDNSGIQvaNLSSQLSEAERERLRLQSRVEQLQRDLAD 1449
Cdd:TIGR02168  625 VLVVDDLDNALELAKKlrpgyrivtldgdlvrpgGVITGGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAE 702

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1450 AEEGQRRAESALQSAQAaralQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQ 1529
Cdd:TIGR02168  703 LRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1530 QVLPHS-------RRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLH 1602
Cdd:TIGR02168  779 EAEAEIeeleaqiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1603 QEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQ--HQRDLAAEAQRLHEAQLQATQALESCEQIH---QQRVKVLERQV 1677
Cdd:TIGR02168  859 AEIEELEELIEELESELEALLNERASLEEALALLrsELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRI 938


                   ....*..
gi 568909977  1678 ASLKKRL 1684
Cdd:TIGR02168  939 DNLQERL 945
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
109-257 2.27e-13

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 70.45  E-value: 2.27e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   109 ADAEREELASRCHMVSQRLQARLDTTEARLRKSELEHSMDLEEALSRLEASQQRSMGLSQVNTLLRQQLEHMQKANDTLA 188
Cdd:pfam15035   33 SELEQQLLEKTSELEKTELLLRKLTLEPRLQRLEREHSADLEEALIRLEEERQRSESLSQVNSLLREQLEQASRANEALR 112

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977   189 RELTRATHSLVHLQRKLELQESQ----------RLSLRQPRdILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTA 257
Cdd:pfam15035  113 EDLQKLTNDWERAREELEQKESEwrkeeeafneYLSSEHSR-LLSLWREVVAVRRQFTELKTATERDLSELKTEFSRTS 190
PTZ00121 PTZ00121
MAEBL; Provisional
 786-1584 9.19e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 70.56  E-value: 9.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  786 LLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRET 865
Cdd:PTZ00121 1041 VLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  866 KLQLHLGQLQQQAAQQEQEAQLALERQ-ELAHTEDLARlhREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQg 944
Cdd:PTZ00121 1121 KKKAEDARKAEEARKAEDARKAEEARKaEDAKRVEIAR--KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE- 1197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  945 EIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA 1024
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1025 isthqREADTLR---EKLREIAAERSSVRREAEELQAQLNVAhERLAELRQELQASEESREGLQREAlgarraleDEVQE 1101
Cdd:PTZ00121 1278 -----RKADELKkaeEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKA--------EEAKK 1343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1102 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRT 1181
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1182 LEAENQRKRQEVSDLQAQVSRDAQHRQKNLQE---SLELQRQVAEAQAAHDgvqkevlgLRQKLAEVEASGETRAKQLEG 1258
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKKADE--------AKKKAEEAKKADEAKKKAEEA 1495

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1259 hlceSQRAEQtlqaelcriTRKLQEASNQADSLQRSLDNACSrvhvleQELAKAEGARCNAEAQLGRLWSTLCSGLGQSR 1338
Cdd:PTZ00121 1496 ----KKKADE---------AKKAAEAKKKADEAKKAEEAKKA------DEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1339 NLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDA--LRDLVQGLLEAQQERDNSG 1416
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELKKAEEEKKKVE 1636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1417 IQVANLSSQLSEAE---RERLRLQSRVEQLQRdlaDAEEGQRRAESALQSAQAARAlQKEALQRLETEhlasARAAGQER 1493
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEelkKAEEENKIKAAEEAK---KAEEDKKKAEEAKKAEEDEKK-AAEALKKEAEE----AKKAEELK 1708

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1494 RRLQEQV---DTLRQALEESSRPSQSLADKgrllEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRL 1570
Cdd:PTZ00121 1709 KKEAEEKkkaEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784

                         810
                  ....*....|....
gi 568909977 1571 IQTEQETLKKEEDR 1584
Cdd:PTZ00121 1785 LDEEDEKRRMEVDK 1798
PTZ00121 PTZ00121
MAEBL; Provisional
 519-1234 2.32e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.40  E-value: 2.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  519 ELRAKADIREAETQKLEVTNAELRRSlllRAEQKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQ 598
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKK---TETGKAEEARKAEEAKKKAEDAR-KAEEARKAEDARKAEEARKAEDAKRVE 1155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  599 LQRDILETEKESLHGALAQAESGNADLELLVTRlKAEGMEQQDSLAKMAAlleglsqdkgtlnhlALQLEQER--DQLRE 676
Cdd:PTZ00121 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEA---------------ARKAEEERkaEEARK 1219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  677 QQKMLQQEQAGMREQLTQTGQQLGliRAER-RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQL 755
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAK--KAEEeRNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  756 AQSLQDQEAQMDILQEA-----LHEKNTLSEERAQLLAKQ-EALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 829
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAkkadeAKKKAEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  830 TQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDT 909
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  910 LSLSLAEEKEAAARWMEQQKELLTRSAADReaLQGEIQNLKQERDEsLLQLEHEMQQALSLKDAEKSLLSKELSGAhrEL 989
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADE--AKKKAEEAKKKADE-AKKAAEAKKKADEAKKAEEAKKADEAKKA--EE 1532

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  990 ERARQEAQNQQVQAEATVTTMTKELRTLQ--VQFEEAISTHQREADTLR--EKLREIAAERSSVRREAEELQAQLNVAHE 1065
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEekKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1066 RLAElRQELQASEESREGLQREALGARRALEDEVQEKdvlqhsNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQV 1145
Cdd:PTZ00121 1613 KKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1146 AAQKEAYELRTRLQELERAQRDTRRKLQERHR--QVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAE 1223
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

                         730
                  ....*....|.
gi 568909977 1224 AQAAHDGVQKE 1234
Cdd:PTZ00121 1766 EEKKAEEIRKE 1776
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 423-1208 5.64e-11

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 67.84  E-value: 5.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   423 HPALQAVQAAIERRQQREQELRLRLESSQEeaagLREQLSGY-RQELRTSQRLLQDRAQEHEDL--LGQLEAQRQEAQLS 499
Cdd:pfam15921   70 YPGKEHIERVLEEYSHQVKDLQRRLNESNE----LHEKQKFYlRQSVIDLQTKLQEMQMERDAMadIRRRESQSQEDLRN 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   500 QA--SVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRrSLLLRAEQKA----------------ELAQQSER 561
Cdd:pfam15921  146 QLqnTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR-SILVDFEEASgkkiyehdsmstmhfrSLGSAISK 224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   562 SLRELEAS----QGRVEQLEEKVSGLRKELATSREALssMQLQRDILE-------------TEKESlhGALAQAESGNAD 624
Cdd:pfam15921  225 ILRELDTEisylKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEqliseheveitglTEKAS--SARSQANSIQSQ 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   625 LELLvtrlkaegmeQQDSLAKMAALLEGLSQDKGTLNHLalqleqeRDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRA 704
Cdd:pfam15921  301 LEII----------QEQARNQNSMYMRQLSDLESTVSQL-------RSELREAKRMYEDKIEELEKQLVLANSELTEART 363

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   705 ERRSLKETCGHLEQKQDHL-------EKQVVLLGQENAQL--------------REQVGQVTNKKQALEKQLAQSLQDQE 763
Cdd:pfam15921  364 ERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKRLwdrdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQ 443

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   764 AQMDILQEALHEKNTLSEERAQLLAKqeaLERHSELVTKEAADLRAERNSLENSlfeaqrlttqlQTQQEQLEGKAEAAQ 843
Cdd:pfam15921  444 GQMERQMAAIQGKNESLEKVSSLTAQ---LESTKEMLRKVVEELTAKKMTLESS-----------ERTVSDLTASLQEKE 509

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   844 LARRALQVEIERLKSDWEVretKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAAR 923
Cdd:pfam15921  510 RAIEATNAEITKLRSRVDL---KLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   924 WMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMqqalslkdAEKSLLSKELSGAHRELERARQEAQNQQVQA 1003
Cdd:pfam15921  587 AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKDIKQERDQL 658

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1004 EATVTTMTKELRTLQVQFEeaisthqreadTLREKLREIAAERSSVrreAEELQAQLNVAHERLAELRQELQASEESREG 1083
Cdd:pfam15921  659 LNEVKTSRNELNSLSEDYE-----------VLKRNFRNKSEEMETT---TNKLKMQLKSAQSELEQTRNTLKSMEGSDGH 724

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1084 LQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1163
Cdd:pfam15921  725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 568909977  1164 AQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQ 1208
Cdd:pfam15921  805 KVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 921-1251 1.95e-08

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 59.85  E-value: 1.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  921 AARWMEQQKELLTRSAADREALQG--EIQNLKQERD------ESLLQLEHEMQQALSLKDAEKSLLSKELSGAHREleRA 992
Cdd:NF012221 1497 ASAWQQKTLKLTAKAGSNRLEFKGtgHNDGLGYILDnvvatsESSQQADAVSKHAKQDDAAQNALADKERAEADRQ--RL 1574

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  993 RQEAQNQqvqaeatvttmTKELRTLQVQFEeaiSTHQREADTLREklreiaAERSSVRREAEELQAQLNVAHERLAELRQ 1072
Cdd:NF012221 1575 EQEKQQQ-----------LAAISGSQSQLE---STDQNALETNGQ------AQRDAILEESRAVTKELTTLAQGLDALDS 1634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1073 ELQASEESREGLqREALGARraLEDEVQEK--DVLQHSNTELRAS----IHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1146
Cdd:NF012221 1635 QATYAGESGDQW-RNPFAGG--LLDRVQEQldDAKKISGKQLADAkqrhVDNQQKVKDAVAKSEAGVAQGEQNQANAEQD 1711

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1147 AQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAEAQa 1226
Cdd:NF012221 1712 IDDAKADAEKRKDDALAKQNEAQQAESDANAAANDAQSRGEQDASAAENKANQAQADAKGAKQD--ESDKPNRQGAAGS- 1788

                         330       340
                  ....*....|....*....|....*
gi 568909977 1227 ahdgvqkevlGLRQKLAEVEASGET 1251
Cdd:NF012221 1789 ----------GLSGKAYSVEGVAEP 1803
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 662-1274 2.41e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 52.53  E-value: 2.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   662 HLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcgHLEQKQDHLEKQVVLLGQENAQLREQV 741
Cdd:pfam12128  241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQ---LLRTLDDQWKEKRDELNGELSAADAAV 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   742 GQVTNKKQALEKQLAQSLQDqeaqmDILQEALHEKNtLSEERAQLlakqEALERHSELVTKEAADLRAERNSLENSLfeA 821
Cdd:pfam12128  318 AKDRSELEALEDQHGAFLDA-----DIETAAADQEQ-LPSWQSEL----ENLEERLKALTGKHQDVTAKYNRRRSKI--K 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   822 QRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWevretklqlhlgqlqqQAAQQEQEAQLALERQELAHTEDLA 901
Cdd:pfam12128  386 EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL----------------REQLEAGKLEFNEEEYRLKSRLGEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   902 RLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 981
Cdd:pfam12128  450 KLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   982 LSGAHRELERARQEAQNQQvQAEATVTTMTKELRTLQVQFEEAISTHQREA------DTLREKLREIAAERSSVRREAEE 1055
Cdd:pfam12128  530 FPQAGTLLHFLRKEAPDWE-QSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvklDLKRIDVPEWAASEEELRERLDK 608

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1056 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEdevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQ-- 1133
Cdd:pfam12128  609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALK---NARLDLRRLFDEKQSEKDKKNKALAERKDSANERln 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1134 ----EQKLLL--LQEAQVAAQKEAYELRTRLQEL---------------------ERAQRDTRRKL--QERHRQVRTLEA 1184
Cdd:pfam12128  686 sleaQLKQLDkkHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallkaaiaaRRSGAKAELKAleTWYKRDLASLGV 765

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1185 ENQ---RKRQEVSDLQAQVSRDAQHRQKNL------QESLELQRQVAEAQAAHdgVQKEVLGLRQKLAEVEASGETRAKQ 1255
Cdd:pfam12128  766 DPDviaKLKREIRTLERKIERIAVRRQEVLryfdwyQETWLQRRPRLATQLSN--IERAISELQQQLARLIADTKLRRAK 843

                          650
                   ....*....|....*....
gi 568909977  1256 LEGHLCESQRAEQTLQAEL 1274
Cdd:pfam12128  844 LEMERKASEKQQVRLSENL 862
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1481-1683 7.05e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 7.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1481 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1560
Cdd:COG4913   232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1561 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1636
Cdd:COG4913   309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 568909977 1637 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1683
Cdd:COG4913   389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 965-1566 5.56e-26

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 116.57  E-value: 5.56e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  965 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAA 1044
Cdd:COG1196   213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1045 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKA 1124
Cdd:COG1196   289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1125 SLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1204
Cdd:COG1196   369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1205 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAeqtlqaelcritrKLQEA 1284
Cdd:COG1196   449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV-------------KAALL 515

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1285 SNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSqtrpgrqrt 1364
Cdd:COG1196   516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA--------- 586

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1365 spptrsySPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQ 1444
Cdd:COG1196   587 -------ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1445 RDLAdaEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLL 1524
Cdd:COG1196   660 GSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 568909977 1525 EQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAAL 1566
Cdd:COG1196   738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 431-1248 2.58e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 111.69  E-value: 2.58e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   431 AAIERRQQREQELRLRLESSQEEAaglrEQLSGYRQELRTSQRLLQDRAQEHEDLLgQLEAQRQEAQLSqASVHLLEREK 510
Cdd:TIGR02168  165 AGISKYKERRKETERKLERTRENL----DRLEDILNELERQLKSLERQAEKAERYK-ELKAELRELELA-LLVLRLEELR 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   511 EALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSER---SLRELEASQGRVEQLEEKVSGLRKEL 587
Cdd:TIGR02168  239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQL 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   588 ATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 667
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELK---EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   668 EQERDQLREQQKMLQQeQAGMREQLTQTGQQLG--LIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 745
Cdd:TIGR02168  396 ASLNNEIERLEARLER-LEDRRERLQQEIEELLkkLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   746 NKKQALEKQLAQSlqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERH----SELVTKEA-------ADLRAERNSL 814
Cdd:TIGR02168  475 QALDAAERELAQL----QARLDSLERLQENLEGFSEGVKALLKNQSGLSGIlgvlSELISVDEgyeaaieAALGGRLQAV 550

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   815 ----------------ENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQA 878
Cdd:TIGR02168  551 vvenlnaakkaiaflkQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   879 AQQEQEAQLALERQELAHTEDLARLHREkdtlSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLL 958
Cdd:TIGR02168  631 LDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRK 705

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   959 QLEhEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnqqvQAEATVTTMTKELRTLQVQFEEAisthQREADTLREK 1038
Cdd:TIGR02168  706 ELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEEL----EERLEEAEEE 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1039 LREIAAERSSVRREAEELQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHR 1118
Cdd:TIGR02168  777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-------LNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1119 AEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQA 1198
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|..
gi 568909977  1199 QVSRdAQHRQKNLQESL--ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS 1248
Cdd:TIGR02168  930 RLEG-LEVRIDNLQERLseEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 452-1283 7.20e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 110.15  E-value: 7.20e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   452 EEAAGLreqlSGYRQELRTSQRLLqDRAQEH----EDLLGQLEAQrqeaqlsqasVHLLEREKEALEttmEELRAKADIR 527
Cdd:TIGR02168  162 EEAAGI----SKYKERRKETERKL-ERTRENldrlEDILNELERQ----------LKSLERQAEKAE---RYKELKAELR 223

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   528 EAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETE 607
Cdd:TIGR02168  224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   608 KESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAG 687
Cdd:TIGR02168  304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   688 MREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQE--NAQLREQVGQVTNKKQALEKqLAQSLQDQEAQ 765
Cdd:TIGR02168  384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleEAELKELQAELEELEEELEE-LQEELERLEEA 462

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   766 MDILQEALHEKNT----LSEERAQLLAKQEALERHSELVTKEAADLRAERNslENSLFEAQRLTTQLQTQQEQLEGKAEA 841
Cdd:TIGR02168  463 LEELREELEEAEQaldaAERELAQLQARLDSLERLQENLEGFSEGVKALLK--NQSGLSGILGVLSELISVDEGYEAAIE 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   842 AQLARRALQVEIERLKSDWE----VRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTL------- 910
Cdd:TIGR02168  541 AALGGRLQAVVVENLNAAKKaiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsy 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   911 -------------SLSLAEEKEAAARWMEQQKELLTRSaadrealqGEIQNLKQERDESLLQLEHEmqqalsLKDAEKSL 977
Cdd:TIGR02168  621 llggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPG--------GVITGGSAKTNSSILERRRE------IEELEEKI 686

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   978 lsKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAisthQREADTLREKLREIAAERSSVRREAEELQ 1057
Cdd:TIGR02168  687 --EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL----RKDLARLEAEVEQLEERIAQLSKELTELE 760

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1058 AQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKL 1137
Cdd:TIGR02168  761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1138 LLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLEL 1217
Cdd:TIGR02168  841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920

                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977  1218 QRQVAEAQAAHDGVQKEVLGLRQKLAEveaSGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQE 1283
Cdd:TIGR02168  921 REKLAQLELRLEGLEVRIDNLQERLSE---EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 434-995 1.79e-23

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 108.49  E-value: 1.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  434 ERRQQREQELRL-RLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 512
Cdd:COG1196   220 EELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  513 LETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 592
Cdd:COG1196   300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  593 ALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 672
Cdd:COG1196   380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  673 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcghlEQKQDHLEKQVVLLGQENAQLREQVGQVtnkkQALE 752
Cdd:COG1196   460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-----AEADYEGFLEGVKAALLLAGLRGLAGAV----AVLI 530

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  753 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 832
Cdd:COG1196   531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  833 EQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 912
Cdd:COG1196   611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  913 SLAEEKEAAARWMEQQKELLTRSAADRE--ALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELE 990
Cdd:COG1196   691 EELELEEALLAEEEEERELAEAEEERLEeeLEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770


                  ....*
gi 568909977  991 RARQE 995
Cdd:COG1196   771 RLERE 775
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 560-1174 1.21e-22

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 105.79  E-value: 1.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  560 ERSLRELEASQGRVEQLEEKVSGLRKELAT----SREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAE 635
Cdd:COG1196   175 EEAERKLEATEENLERLEDILGELERQLEPlerqAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAE 254

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  636 GMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGH 715
Cdd:COG1196   255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  716 LEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALER 795
Cdd:COG1196   335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  796 HSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQ 875
Cdd:COG1196   415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  876 QQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQkeLLTRSAADREALQGEIQNLKQERDE 955
Cdd:COG1196   495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAG 572

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  956 SLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTkelrtlqvqfEEAISTHQREADTL 1035
Cdd:COG1196   573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV----------AARLEAALRRAVTL 642

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1036 REKLREIAAERSSVRREAEELQAQlnvAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRAS 1115
Cdd:COG1196   643 AGRLREVTLEGEGGSAGGSLTGGS---RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977 1116 IHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQE 1174
Cdd:COG1196   720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 673-1244 1.63e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 102.32  E-value: 1.63e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  673 QLREQQKMLQQEQAGMREQLTQtgQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALE 752
Cdd:COG1196   217 ELKEELKELEAELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  753 KQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 832
Cdd:COG1196   295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  833 EQLEGKAEAAQLARRALQVEIERLKSdwevrETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSL 912
Cdd:COG1196   375 AEAEEELEELAEELLEALRAAAELAA-----QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  913 SLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERA 992
Cdd:COG1196   450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  993 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQ 1072
Cdd:COG1196   530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1073 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAY 1152
Cdd:COG1196   610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1153 ELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVsrdAQHRQKNLQESLELQRQVAEAQAAHDGVQ 1232
Cdd:COG1196   690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL---LEELLEEEELLEEEALEELPEPPDLEELE 766

                         570
                  ....*....|..
gi 568909977 1233 KEVLGLRQKLAE 1244
Cdd:COG1196   767 RELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1033-1680 2.04e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 101.94  E-value: 2.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1033 DTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTEL 1112
Cdd:COG1196   235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1113 RASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQE 1192
Cdd:COG1196   315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1193 VSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGEtrakqleghlcESQRAEQTLQA 1272
Cdd:COG1196   395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-----------ELEEEEEALLE 463

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1273 ELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGarcnaeaqlgrlwstlcsglgqsrnllaspkrphsptt 1352
Cdd:COG1196   464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG-------------------------------------- 505

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1353 gssqtrpgrqrtspptrsysparwpspvpvdpksevidvafvrdalrdLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1432
Cdd:COG1196   506 ------------------------------------------------FLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1433 RLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARAlqkeALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSR 1512
Cdd:COG1196   538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA----TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1513 PSQSLADkgRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKE 1592
Cdd:COG1196   614 RYYVLGD--TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1593 LLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKV 1672
Cdd:COG1196   692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771


                  ....*...
gi 568909977 1673 LERQVASL 1680
Cdd:COG1196   772 LEREIEAL 779
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 949-1684 2.12e-21

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 102.06  E-value: 2.12e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   949 LKQERDESLLQLEHeMQQALslkdaeksllsKELSGAHRELERARQEAQNQQVQAEatvttmtkELRTLQVQFEEA-IST 1027
Cdd:TIGR02168  170 YKERRKETERKLER-TRENL-----------DRLEDILNELERQLKSLERQAEKAE--------RYKELKAELRELeLAL 229

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1028 HQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH 1107
Cdd:TIGR02168  230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1108 SNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQ 1187
Cdd:TIGR02168  310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1188 RKRQEVSDLQAQVSR------DAQHRQKNLQESLELQRQVAEAQAAHDgVQKEVLGLRQKLAEVEASGETRAKQLEGHLC 1261
Cdd:TIGR02168  390 QLELQIASLNNEIERlearleRLEDRRERLQQEIEELLKKLEEAELKE-LQAELEELEEELEELQEELERLEEALEELRE 468

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1262 ESQRAEQTLQAELcritRKLQEASNQADSLQRSLDNACSRVHVLEQELAKA-----------------EGARCNAEAQLG 1324
Cdd:TIGR02168  469 ELEEAEQALDAAE----RELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvdEGYEAAIEAALG 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1325 -RLWSTLCSGLGQSRNLLASPKRPHS-------PTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPK---------SE 1387
Cdd:TIGR02168  545 gRLQAVVVENLNAAKKAIAFLKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllGG 624

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1388 VIDVAFVRDALRDLVQ------------------GLLEAQQERDNSGIQvaNLSSQLSEAERERLRLQSRVEQLQRDLAD 1449
Cdd:TIGR02168  625 VLVVDDLDNALELAKKlrpgyrivtldgdlvrpgGVITGGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAE 702

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1450 AEEGQRRAESALQSAQAaralQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQ 1529
Cdd:TIGR02168  703 LRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1530 QVLPHS-------RRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLH 1602
Cdd:TIGR02168  779 EAEAEIeeleaqiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1603 QEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQ--HQRDLAAEAQRLHEAQLQATQALESCEQIH---QQRVKVLERQV 1677
Cdd:TIGR02168  859 AEIEELEELIEELESELEALLNERASLEEALALLrsELEELSEELRELESKRSELRRELEELREKLaqlELRLEGLEVRI 938


                   ....*..
gi 568909977  1678 ASLKKRL 1684
Cdd:TIGR02168  939 DNLQERL 945
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 913-1509 4.69e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 100.78  E-value: 4.69e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  913 SLAEEKEAAARWMEQQKELLTRSA----ADREALQGEIQNLKQERDESLLQLEHEmQQALSLKDAEKSLLSKELSGAHRE 988
Cdd:COG1196   204 PLERQAEKAERYRELKEELKELEAelllLKLRELEAELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELE 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  989 LERARQEAQNQQVQAEATVTTMTKELRTLQvQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLA 1068
Cdd:COG1196   283 LEEAQAEEYELLAELARLEQDIARLEERRR-ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1069 ELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQ 1148
Cdd:COG1196   362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1149 KEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAH 1228
Cdd:COG1196   442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1229 DGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQE 1308
Cdd:COG1196   522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1309 LAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSysparwpspvpvdpksev 1388
Cdd:COG1196   602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT------------------ 663

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1389 idvafvRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAAR 1468
Cdd:COG1196   664 ------GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|.
gi 568909977 1469 ALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEE 1509
Cdd:COG1196   738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 523-1126 9.91e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.63  E-value: 9.91e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  523 KADIREAEtQKLEVTNAELRRSLLLRAE---QKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQL 599
Cdd:COG1196   171 KERKEEAE-RKLEATEENLERLEDILGElerQLEPLERQAEKAERYRELKE-ELKELEAELLLLKLRELEAELEELEAEL 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  600 QRdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQK 679
Cdd:COG1196   249 EE--LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  680 MLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSL 759
Cdd:COG1196   327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  760 QDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKA 839
Cdd:COG1196   407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  840 EAAQlARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKE 919
Cdd:COG1196   487 AEAA-ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  920 AAARWMEQQKELLTRSAADREALQGEIQNLKQERD----ESLLQLEHEMQQALSLKDAEKSLLSKELSGAH---RELERA 992
Cdd:COG1196   566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDTLLGRTLVAARLEAALrraVTLAGR 645

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  993 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQ 1072
Cdd:COG1196   646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568909977 1073 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASL 1126
Cdd:COG1196   726 LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1037-1651 9.99e-21

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 99.63  E-value: 9.99e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1037 EKLREIAAERSsvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASI 1116
Cdd:COG1196   213 ERYRELKEELK--ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1117 HRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDL 1196
Cdd:COG1196   291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1197 QAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCR 1276
Cdd:COG1196   371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA----ELEEEEEEEEEALEE 446

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1277 ITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLgrlwstlcsglgqsrNLLASPKRPHSPTTGSSQ 1356
Cdd:COG1196   447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL---------------LLLLEAEADYEGFLEGVK 511

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1357 TRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRL 1436
Cdd:COG1196   512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1437 QSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQS 1516
Cdd:COG1196   592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1517 LADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQ 1596
Cdd:COG1196   672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977 1597 SLSHLHQEVD--GALRQSQQLQAQMAELE----------QAHTQRLQELAAQHQrDLAAEAQRLHEA 1651
Cdd:COG1196   752 ALEELPEPPDleELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQRE-DLEEARETLEEA 817
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 666-1330 2.54e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 98.59  E-value: 2.54e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   666 QLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 745
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   746 NKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLT 825
Cdd:TIGR02168  316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   826 TQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHR 905
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   906 EKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQ-NLKQERDESLLQLEHEMQQALSL-------------- 970
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlSGILGVLSELISVDEGYEAAIEAalggrlqavvvenl 555

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   971 ---KDAEKSLLSKELSGAH-----RELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIST---HQREADTLREKL 1039
Cdd:TIGR02168  556 naaKKAIAFLKQNELGRVTflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgGVLVVDDLDNAL 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1040 R------------------------------EIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREAL 1089
Cdd:TIGR02168  636 ElakklrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1090 GARRALEDEVQekdvlQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEayELRTRLQELERAQRDTR 1169
Cdd:TIGR02168  716 QLRKELEELSR-----QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--EAEEELAEAEAEIEELE 788

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1170 RKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASG 1249
Cdd:TIGR02168  789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1250 ETRAKQLEGHLCESQRAEQ---TLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRL 1326
Cdd:TIGR02168  869 EELESELEALLNERASLEEalaLLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948


                   ....
gi 568909977  1327 WSTL 1330
Cdd:TIGR02168  949 YSLT 952
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 897-1625 9.04e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 96.66  E-value: 9.04e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   897 TEDLARLHREKDTLSLSL-AEEKEAAARWMEQQKELLTRSAADREALQGEIQNL----------KQERDESLLQLEHEMQ 965
Cdd:TIGR02168  212 AERYKELKAELRELELALlVLRLEELREELEELQEELKEAEEELEELTAELQELeekleelrleVSELEEEIEELQKELY 291

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   966 ---QALSLKDAEKSLLSKELSGAHRELERA---RQEAQNQQVQAEATVTTMTKELRTLQVQFE---EAISTHQREADTLR 1036
Cdd:TIGR02168  292 alaNEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEELAELEEKLEELKEELEsleAELEELEAELEELE 371

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1037 EKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDevQEKDVLQHSNTELRASI 1116
Cdd:TIGR02168  372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1117 HRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRdtrrKLQERHRQVRTLEAENQRKRQEVSDL 1196
Cdd:TIGR02168  450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVL 525

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1197 QAQVSRDAQ-----------HRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQ-KLAEVEASGETRAKQLEGHLC--- 1261
Cdd:TIGR02168  526 SELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGvak 605

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1262 ----ESQRAEQTLQAEL--CRITRKLQEASNQADSLQRSLDNAC------SRVHVLEQELAKAEGARCNAEAQLGRLWST 1329
Cdd:TIGR02168  606 dlvkFDPKLRKALSYLLggVLVVDDLDNALELAKKLRPGYRIVTldgdlvRPGGVITGGSAKTNSSILERRREIEELEEK 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1330 LCSGLGQSRNLLASPKR-PHSPTTGSSQTRPGRQRTSPPTRSYSPARwpspvpVDPKSEVIDVAFVRDALRDLVQGLLEA 1408
Cdd:TIGR02168  686 IEELEEKIAELEKALAElRKELEELEEELEQLRKELEELSRQISALR------KDLARLEAEVEQLEERIAQLSKELTEL 759

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1409 QQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARA 1488
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1489 AG---QERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAA 1565
Cdd:TIGR02168  840 LEdleEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568909977  1566 LRTRL--IQTEQETLKKEEDRaMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQA 1625
Cdd:TIGR02168  920 LREKLaqLELRLEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 532-1295 3.16e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 94.74  E-value: 3.16e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   532 QKLEVTNAELRRSLLlRAEQKAELAQQSERSLRELEASQGRVEQLEEKVsgLRKELATSREALSSMQLQRDILETEKESL 611
Cdd:TIGR02168  189 DRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLRLEE--LREELEELQEELKEAEEELEELTAELQEL 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   612 HGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQ 691
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   692 LTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLaqslQDQEAQMDILQE 771
Cdd:TIGR02168  346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQ 421

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   772 alhekNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQV 851
Cdd:TIGR02168  422 -----EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   852 EIERLKSdwEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLArlhrekDTLSLSLAEEKEAAARWMEQQKEL 931
Cdd:TIGR02168  497 LQENLEG--FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALG------GRLQAVVVENLNAAKKAIAFLKQN 568

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   932 LTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSL---LSKELSGAHreLERARQEAQNQQVQAEATVT 1008
Cdd:TIGR02168  569 ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkaLSYLLGGVL--VVDDLDNALELAKKLRPGYR 646

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1009 TMTKELRTL---------QVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEE 1079
Cdd:TIGR02168  647 IVTLDGDLVrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1080 SREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQ 1159
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1160 ELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLR 1239
Cdd:TIGR02168  807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977  1240 QKLAEVEASGETRAKQL---EGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSL 1295
Cdd:TIGR02168  887 EALALLRSELEELSEELrelESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 425-955 3.34e-19

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 94.62  E-value: 3.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  425 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVH 504
Cdd:COG1196   261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  505 LLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLR 584
Cdd:COG1196   341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  585 KELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQdkgtlNHLA 664
Cdd:COG1196   421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-----RLLL 495

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  665 LQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQkQDHLEKQVVLLGQENAQLREQVGQV 744
Cdd:COG1196   496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ-NIVVEDDEVAAAAIEYLKAAKAGRA 574

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  745 TNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRL 824
Cdd:COG1196   575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  825 TTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLH 904
Cdd:COG1196   655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568909977  905 REKDTLSLSLAEEKEAAArwmeqqkELLTRSAADREALQGEIQNLKQERDE 955
Cdd:COG1196   735 EELLEELLEEEELLEEEA-------LEELPEPPDLEELERELERLEREIEA 778
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 435-1216 7.44e-19

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 93.58  E-value: 7.44e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   435 RRQQREQELRLRLESSQEEAAGLReqLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALE 514
Cdd:TIGR02168  210 EKAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   515 TTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAL 594
Cdd:TIGR02168  288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   595 SSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQleQERDQL 674
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEEL 445

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   675 REQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQvvllgQENAQlreqvgqvtnKKQALEKQ 754
Cdd:TIGR02168  446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL-----QENLE----------GFSEGVKA 510

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   755 LAQSLQDQEAQMDILQEALHEKNTLSeeraqlLAKQEALERHSE-LVTKEAADLRAERNSL-ENSLFEAQRLTTQLQTQQ 832
Cdd:TIGR02168  511 LLKNQSGLSGILGVLSELISVDEGYE------AAIEAALGGRLQaVVVENLNAAKKAIAFLkQNELGRVTFLPLDSIKGT 584

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   833 EQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTED---------LARL 903
Cdd:TIGR02168  585 EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvITGG 664

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   904 HREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERdESLLQLEHEMQQALSLKDAEKSLLSKELS 983
Cdd:TIGR02168  665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-EQLRKELEELSRQISALRKDLARLEAEVE 743

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   984 GAHRELERARQEAQNQQVQAEAT------VTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQ 1057
Cdd:TIGR02168  744 QLEERIAQLSKELTELEAEIEELeerleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1058 AQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKL 1137
Cdd:TIGR02168  824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1138 LLLQEAQVAAQKEAYELRT-------RLQELERaqrdTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQvsrDAQHRQKN 1210
Cdd:TIGR02168  904 RELESKRSELRRELEELREklaqlelRLEGLEV----RIDNLQERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKR 976


                   ....*.
gi 568909977  1211 LQESLE 1216
Cdd:TIGR02168  977 LENKIK 982
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1065-1695 2.88e-15

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 81.91  E-value: 2.88e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1065 ERLAELRQELqasEESREGLQREALGARR--ALEDEVQEKDVlqhsnTELRASIHRAEQEKASLKRSKEEQEQKLLLLQE 1142
Cdd:COG1196   189 ERLEDILGEL---ERQLEPLERQAEKAERyrELKEELKELEA-----ELLLLKLRELEAELEELEAELEELEAELEELEA 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1143 AQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVA 1222
Cdd:COG1196   261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1223 EAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRV 1302
Cdd:COG1196   341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELA----EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1303 HVLEQELAKAEGARCNAEAQLGRLwstlcsglgqsrnllaspkrphspttgssqtrpgrqrtspptrsysparwpspvpv 1382
Cdd:COG1196   417 ERLEEELEELEEALAELEEEEEEE-------------------------------------------------------- 440

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1383 dpKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQ 1462
Cdd:COG1196   441 --EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1463 SAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRpsqslADKGRLLEQPLQQVLPHSRRDRAER 1542
Cdd:COG1196   519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA-----AKAGRATFLPLDKIRARAALAAALA 593

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1543 RALREQttsLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAEL 1622
Cdd:COG1196   594 RGAIGA---AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977 1623 EQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASLKKRLDKEVWQRQQQA 1695
Cdd:COG1196   671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 508-1201 1.90e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 79.34  E-value: 1.90e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   508 REKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAE-----------QKAELAQQSERSLRELEASQGRVEQL 576
Cdd:TIGR02169  177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyegyellkEKEALERQKEAIERQLASLEEELEKL 256

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   577 EEKVSGLRKELATSREALSsmQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQD 656
Cdd:TIGR02169  257 TEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   657 KGTLNHLALQLEQ---ERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQE 733
Cdd:TIGR02169  335 LAEIEELEREIEEerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   734 NAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNS 813
Cdd:TIGR02169  415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   814 LENSLFEAQRLTTQLQTQQEQLEGKAEA-----AQL----ARRALQVEIE---RLKS----DWEV--------RETKLQL 869
Cdd:TIGR02169  495 AEAQARASEERVRGGRAVEEVLKASIQGvhgtvAQLgsvgERYATAIEVAagnRLNNvvveDDAVakeaiellKRRKAGR 574

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   870 HLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHRE---------KDTLslsLAEEKEAAARWMEQQK------ELLTR 934
Cdd:TIGR02169  575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKyepafkyvfGDTL---VVEDIEAARRLMGKYRmvtlegELFEK 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   935 SAA-------------DREALQGEIQNLkQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQnQQV 1001
Cdd:TIGR02169  652 SGAmtggsraprggilFSRSEPAELQRL-RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE-QLE 729

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1002 QAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLnvAHERLAELRQELQASEESR 1081
Cdd:TIGR02169  730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEV 807

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1082 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQEL 1161
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|
gi 568909977  1162 ERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1201
Cdd:TIGR02169  888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 838-1326 2.32e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 78.83  E-value: 2.32e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  838 KAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQqqaaQQEQEAQLALERQELAhTEDLARLHREKDTLSLSLAEE 917
Cdd:COG1196   226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELA----ELEAELEELRLELEEL-ELELEEAQAEEYELLAELARL 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  918 KEAAARWMEQQKEL---LTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELsgAHRELERARQ 994
Cdd:COG1196   301 EQDIARLEERRRELeerLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL--EAEAELAEAE 378

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  995 EAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQEL 1074
Cdd:COG1196   379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1075 QASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYEL 1154
Cdd:COG1196   459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1155 RTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR---DAQHRQKNLQESLELQRQVAEAQAAHDGV 1231
Cdd:COG1196   539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAalaAALARGAIGAAVDLVASDLREADARYYVL 618

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1232 QKEVLGlRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAK 1311
Cdd:COG1196   619 GDTLLG-RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697

                         490
                  ....*....|....*
gi 568909977 1312 AEGARCNAEAQLGRL 1326
Cdd:COG1196   698 ALLAEEEEERELAEA 712
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 916-1675 8.28e-14

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 77.03  E-value: 8.28e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   916 EEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESL----LQLEHEmQQALSLKDAEKSLLSKELSGAHRELER 991
Cdd:TIGR02169  170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqaLLKEKR-EYEGYELLKEKEALERQKEAIERQLAS 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   992 ARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELR 1071
Cdd:TIGR02169  249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1072 QELQASEESREGLQREaLGARRALEDEVQEKdvLQHSNTELRASIHRAEQEKASLKRSKEEQEQklllLQEAQVAAQKEA 1151
Cdd:TIGR02169  329 AEIDKLLAEIEELERE-IEEERKRRDKLTEE--YAELKEELEDLRAELEEVDKEFAETRDELKD----YREKLEKLKREI 401

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1152 YELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGV 1231
Cdd:TIGR02169  402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1232 QKEVLGLRQKLAEVEAsgetRAKQLEGHLCESQRAEQTLQ----------AELCRITRKLQEAsnqadsLQRSLDNACSR 1301
Cdd:TIGR02169  482 EKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKasiqgvhgtvAQLGSVGERYATA------IEVAAGNRLNN 551

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1302 VhVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRP------------------------------HSPT 1351
Cdd:TIGR02169  552 V-VVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvEDIE 630

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1352 TGSSQTRPGRQRT------SPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQ 1425
Cdd:TIGR02169  631 AARRLMGKYRMVTlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1426 LSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQ--------ERRRLQ 1497
Cdd:TIGR02169  711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKleealndlEARLSH 790

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1498 EQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQET 1577
Cdd:TIGR02169  791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1578 LKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRdlAAEAQRLHEAQLQATQ 1657
Cdd:TIGR02169  871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPE 948

                          810
                   ....*....|....*...
gi 568909977  1658 ALESCEQIHQQRVKVLER 1675
Cdd:TIGR02169  949 EELSLEDVQAELQRVEEE 966
Rootletin pfam15035
Ciliary rootlet component, centrosome cohesion;
109-257 2.27e-13

Ciliary rootlet component, centrosome cohesion;


Pssm-ID: 464459 [Multi-domain]  Cd Length: 190  Bit Score: 70.45  E-value: 2.27e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   109 ADAEREELASRCHMVSQRLQARLDTTEARLRKSELEHSMDLEEALSRLEASQQRSMGLSQVNTLLRQQLEHMQKANDTLA 188
Cdd:pfam15035   33 SELEQQLLEKTSELEKTELLLRKLTLEPRLQRLEREHSADLEEALIRLEEERQRSESLSQVNSLLREQLEQASRANEALR 112

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977   189 RELTRATHSLVHLQRKLELQESQ----------RLSLRQPRdILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTA 257
Cdd:pfam15035  113 EDLQKLTNDWERAREELEQKESEwrkeeeafneYLSSEHSR-LLSLWREVVAVRRQFTELKTATERDLSELKTEFSRTS 190
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 284-1061 3.06e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 3.06e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   284 QRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRrsggqlavdelrdevesl 363
Cdd:TIGR02168  242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------------------ 303

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   364 hhvlasikevaqsdamcpelawsssieVREAQARLRspprsvsphqrmspartssptSLHPALQAVQAAIERRQQREQEL 443
Cdd:TIGR02168  304 ---------------------------KQILRERLA---------------------NLERQLEELEAQLEELESKLDEL 335

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   444 RLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL--- 520
Cdd:TIGR02168  336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLedr 415

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   521 --RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQ 598
Cdd:TIGR02168  416 reRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   599 LQRDILETEKESLHGALAQAESGNADLELLVTRLKAegmEQQDSLAKMAALLEGLSQ-------------------DKGT 659
Cdd:TIGR02168  496 RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAIEAALGGRLQAvvvenlnaakkaiaflkqnELGR 572

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   660 LNHLALQLEQERDQLREQQKMLQQEQAGMR--------------------------EQLTQTGQQLGLIRAERR------ 707
Cdd:TIGR02168  573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRivtldg 652

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   708 SLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLL 787
Cdd:TIGR02168  653 DLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   788 AKQEALERHSELVTKEAADLRAERNSLENSlfEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKL 867
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAE--IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   868 QLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREkdtlslsLAEEKEAAARWMEQQKELLTRSAADREALQGEIQ 947
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-------LSEDIESLAAEIEELEELIEELESELEALLNERA 883

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   948 NLKQERDESLLQLEHEMQQAlslkdaeksllsKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAist 1027
Cdd:TIGR02168  884 SLEEALALLRSELEELSEEL------------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE--- 948

                          810       820       830
                   ....*....|....*....|....*....|....
gi 568909977  1028 HQREADTLREKLREIAAERSSVRREAEELQAQLN 1061
Cdd:TIGR02168  949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 101-795 1.28e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 73.17  E-value: 1.28e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   101 RLEDLLAQADAEREELASRCHMVSQRLQ------ARLDTTEARLRKSELEHSMDLEEALSRLEASQQRSMGLSQVNTLLR 174
Cdd:TIGR02168  243 ELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   175 QQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQPRDILPlwRQAKALQTHLAELR---ASTERGLTDVQA 251
Cdd:TIGR02168  323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE--SRLEELEEQLETLRskvAQLELQIASLNN 400

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   252 DMTRTAQRLHMACLNLDShlrltASSMTSDLEQRLREQAREMLQLQ-GQWAAEKVALQARLSEQTLLVEKLSVQKEQGER 330
Cdd:TIGR02168  401 EIERLEARLERLEDRRER-----LQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   331 AILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQ-----SDAMCPELAWSSSIEV-------------- 391
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlSELISVDEGYEAAIEAalggrlqavvvenl 555

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   392 ----------------------------REAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQA----------VQAAI 433
Cdd:TIGR02168  556 naakkaiaflkqnelgrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvddLDNAL 635

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   434 ERRQQREQELRL---------RLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVH 504
Cdd:TIGR02168  636 ELAKKLRPGYRIvtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   505 LLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLR 584
Cdd:TIGR02168  716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   585 KELATSREALSSmqlqrdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGlsqdkgtlnhLA 664
Cdd:TIGR02168  796 EELKALREALDE-------LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES----------LA 858

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   665 LQLEQERDQLREQQKMLQQEQagmrEQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQV 744
Cdd:TIGR02168  859 AEIEELEELIEELESELEALL----NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|.
gi 568909977   745 TNKKQALEKQLAqslqdqEAQMDILQEALHEKNTLSEERAQLLAKQEALER 795
Cdd:TIGR02168  935 EVRIDNLQERLS------EEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 747-1680 3.24e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.01  E-value: 3.24e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   747 KKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE--ERAQ-LLAKQEALERHS-ELVTKEAADLRAERNSLENSLFEAQ 822
Cdd:TIGR02168  173 RRKETERKLERTRENLDRLEDILNELERQLKSLERqaEKAErYKELKAELRELElALLVLRLEELREELEELQEELKEAE 252

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   823 RLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEvretklqlhlgqlqqqaaqQEQEAQLALERQELAHTEDLAR 902
Cdd:TIGR02168  253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY-------------------ALANEISRLEQQKQILRERLAN 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   903 LHREKDTLSLSLAEEkeaaarwmEQQKELLTRSAADREALQGEIQNlkqerdesllqlEHEMQQAlslkdaeksllskel 982
Cdd:TIGR02168  314 LERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKE------------ELESLEA--------------- 358

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   983 sgahrELERARQEAQNqqvqaeatvttmtkelrtlqvqfeeaisthqreadtLREKLREIAAERSSVRREAEELQAQLNV 1062
Cdd:TIGR02168  359 -----ELEELEAELEE------------------------------------LESRLEELEEQLETLRSKVAQLELQIAS 397

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1063 AHERLAELRQELQASEESREGLQREALGARRALEDevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQE 1142
Cdd:TIGR02168  398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1143 AQVAAQKEAYELRTRLQELERAQrdtrRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ-----------HRQKNL 1211
Cdd:TIGR02168  476 ALDAAERELAQLQARLDSLERLQ----ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggRLQAVV 551

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1212 QESLELQRQVAEAQAAHDGVQKEVLGLRQ-KLAEVEASGETRAKQLEGHLCESQRAEQTlqaelcritrklqeasnqADS 1290
Cdd:TIGR02168  552 VENLNAAKKAIAFLKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKF------------------DPK 613

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1291 LQRSLDNACSRVHVLE-----QELAKAEGARCNAEAQLGRLWSTLCSGLGQSRnllaspKRPHSPTTGSSQTRPGRQRTS 1365
Cdd:TIGR02168  614 LRKALSYLLGGVLVVDdldnaLELAKKLRPGYRIVTLDGDLVRPGGVITGGSA------KTNSSILERRREIEELEEKIE 687

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1366 PPTRSYSPARwpspvpvdpksevIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQR 1445
Cdd:TIGR02168  688 ELEEKIAELE-------------KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1446 DLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEqvdtLRQALEESSRPSQSLADKGRLLE 1525
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE----LRAELTLLNEEAANLRERLESLE 830

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1526 QPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEV 1605
Cdd:TIGR02168  831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977  1606 DGALRQSQQLQAQMAELeQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASL 1680
Cdd:TIGR02168  911 SELRRELEELREKLAQL-ELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 87-684 4.96e-12

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 71.12  E-value: 4.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   87 HAREESELLQEELTRLEDLLAQADAEREELASRCHMVSQRLQaRLDTTEARLRKSELEHSMDLEEALSRLEASQQRSMGL 166
Cdd:COG1196   236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE-ELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  167 SQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQprdilplwrQAKALQTHLAELRASTERGL 246
Cdd:COG1196   315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE---------ALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  247 TDVQADMTRTAQRlhmacLNLDSHLRLTASSMTSDLEQRLREQAREmlqlqgqwAAEKVALQARLSEQTLLVEKLSVQKE 326
Cdd:COG1196   386 EELLEALRAAAEL-----AAQLEELEEAEEALLERLERLEEELEEL--------EEALAELEEEEEEEEEALEEAAEEEA 452

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  327 QGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQSDamcpELAWSSSIEVREAQARLRSPPRSVS 406
Cdd:COG1196   453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY----EGFLEGVKAALLLAGLRGLAGAVAV 528

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  407 PHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLL 486
Cdd:COG1196   529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  487 GQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLREL 566
Cdd:COG1196   609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  567 EASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKM 646
Cdd:COG1196   689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 568909977  647 AALLEGLSQDKGTLNHLALQ----LEQERDQLREQQKMLQQE 684
Cdd:COG1196   769 LERLEREIEALGPVNLLAIEeyeeLEERYDFLSEQREDLEEA 810
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 284-998 6.87e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.86  E-value: 6.87e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   284 QRLREQAREMLQLQGQ-WAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVES 362
Cdd:TIGR02168  213 ERYKELKAELRELELAlLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   363 LHHVLASIKEvaqsdamcpelawsssiEVREAQARLRSpprsvsphqrmspartssptsLHPALQAVQAAIERRQQREQE 442
Cdd:TIGR02168  293 LANEISRLEQ-----------------QKQILRERLAN---------------------LERQLEELEAQLEELESKLDE 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   443 LRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL-- 520
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLed 414

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   521 ---RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSM 597
Cdd:TIGR02168  415 rreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   598 QLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEgmeQQDSLAKMAALLEGLSQ-------------------DKG 658
Cdd:TIGR02168  495 ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD---EGYEAAIEAALGGRLQAvvvenlnaakkaiaflkqnELG 571

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   659 TLNHLALQLEQER--------------------------------------------DQLREQQKMLQQEQAGMR----- 689
Cdd:TIGR02168  572 RVTFLPLDSIKGTeiqgndreilkniegflgvakdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRivtld 651

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   690 -EQLTQTG------------------------QQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQV 744
Cdd:TIGR02168  652 gDLVRPGGvitggsaktnssilerrreieeleEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   745 TNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRL 824
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   825 TTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQEL--AHTEDLAR 902
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraSLEEALAL 891

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   903 LHREKDTLSLSLAE---EKEAAARWMEQQKELLTRSAADREALQGEIQNLkQERDESLLQLEHEMQQALSLKDAEkslls 979
Cdd:TIGR02168  892 LRSELEELSEELRElesKRSELRRELEELREKLAQLELRLEGLEVRIDNL-QERLSEEYSLTLEEAEALENKIED----- 965

                          810
                   ....*....|....*....
gi 568909977   980 kELSGAHRELERARQEAQN 998
Cdd:TIGR02168  966 -DEEEARRRLKRLENKIKE 983
PTZ00121 PTZ00121
MAEBL; Provisional
 786-1584 9.19e-12

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 70.56  E-value: 9.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  786 LLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRET 865
Cdd:PTZ00121 1041 VLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  866 KLQLHLGQLQQQAAQQEQEAQLALERQ-ELAHTEDLARlhREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQg 944
Cdd:PTZ00121 1121 KKKAEDARKAEEARKAEDARKAEEARKaEDAKRVEIAR--KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE- 1197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  945 EIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA 1024
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1025 isthqREADTLR---EKLREIAAERSSVRREAEELQAQLNVAhERLAELRQELQASEESREGLQREAlgarraleDEVQE 1101
Cdd:PTZ00121 1278 -----RKADELKkaeEKKKADEAKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKA--------EEAKK 1343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1102 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRT 1181
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1182 LEAENQRKRQEVSDLQAQVSRDAQHRQKNLQE---SLELQRQVAEAQAAHDgvqkevlgLRQKLAEVEASGETRAKQLEG 1258
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKKADE--------AKKKAEEAKKADEAKKKAEEA 1495

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1259 hlceSQRAEQtlqaelcriTRKLQEASNQADSLQRSLDNACSrvhvleQELAKAEGARCNAEAQLGRLWSTLCSGLGQSR 1338
Cdd:PTZ00121 1496 ----KKKADE---------AKKAAEAKKKADEAKKAEEAKKA------DEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1339 NLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDVAFVRDA--LRDLVQGLLEAQQERDNSG 1416
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAeeAKIKAEELKKAEEEKKKVE 1636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1417 IQVANLSSQLSEAE---RERLRLQSRVEQLQRdlaDAEEGQRRAESALQSAQAARAlQKEALQRLETEhlasARAAGQER 1493
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEelkKAEEENKIKAAEEAK---KAEEDKKKAEEAKKAEEDEKK-AAEALKKEAEE----AKKAEELK 1708

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1494 RRLQEQV---DTLRQALEESSRPSQSLADKgrllEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRL 1570
Cdd:PTZ00121 1709 KKEAEEKkkaEELKKAEEENKIKAEEAKKE----AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784

                         810
                  ....*....|....
gi 568909977 1571 IQTEQETLKKEEDR 1584
Cdd:PTZ00121 1785 LDEEDEKRRMEVDK 1798
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 101-822 1.07e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.09  E-value: 1.07e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   101 RLEDLLAQADAEREELASRCHMVsQRLQARLDTTEARLRKSELEHS---MDLEEALSRLEASQQRSMGLSQVNTLLRQQL 177
Cdd:TIGR02168  233 RLEELREELEELQEELKEAEEEL-EELTAELQELEEKLEELRLEVSeleEEIEELQKELYALANEISRLEQQKQILRERL 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   178 EHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQPRDILP------------LWRQAKALQTHLAELR---AST 242
Cdd:TIGR02168  312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEaeleeleaeleeLESRLEELEEQLETLRskvAQL 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   243 ERGLTDVQADMTRTAQRLHMACLNLDShlrltASSMTSDLEQRLREQAREMLQLQ-GQWAAEKVALQARLSEQTLLVEKL 321
Cdd:TIGR02168  392 ELQIASLNNEIERLEARLERLEDRRER-----LQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEEL 466

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   322 SVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQ-----SDAMCPELAWSSSIEVrEAQA 396
Cdd:TIGR02168  467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlSELISVDEGYEAAIEA-ALGG 545

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   397 RLRSPprsVSPhqrmspartssptSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQ 476
Cdd:TIGR02168  546 RLQAV---VVE-------------NLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   477 DRAQEHEDLLGQLeaqrqeaqlsqASVHLLEREKEALETtMEELRAKADIREAETQKLevtnaeLRRSLLLRAEQKAELA 556
Cdd:TIGR02168  610 FDPKLRKALSYLL-----------GGVLVVDDLDNALEL-AKKLRPGYRIVTLDGDLV------RPGGVITGGSAKTNSS 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   557 QQSERslRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEG 636
Cdd:TIGR02168  672 ILERR--REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   637 MEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQlreqqkmLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHL 716
Cdd:TIGR02168  750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-------LEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   717 EQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERH 796
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

                          730       740
                   ....*....|....*....|....*.
gi 568909977   797 SELVTKEAADLRAERNSLENSLFEAQ 822
Cdd:TIGR02168  903 LRELESKRSELRRELEELREKLAQLE 928
PTZ00121 PTZ00121
MAEBL; Provisional
 519-1234 2.32e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 69.40  E-value: 2.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  519 ELRAKADIREAETQKLEVTNAELRRSlllRAEQKAELAQQSERSLRELEASQgRVEQLEEKVSGLRKELATSREALSSMQ 598
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKK---TETGKAEEARKAEEAKKKAEDAR-KAEEARKAEDARKAEEARKAEDAKRVE 1155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  599 LQRDILETEKESLHGALAQAESGNADLELLVTRlKAEGMEQQDSLAKMAAlleglsqdkgtlnhlALQLEQER--DQLRE 676
Cdd:PTZ00121 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEEVR-KAEELRKAEDARKAEA---------------ARKAEEERkaEEARK 1219

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  677 QQKMLQQEQAGMREQLTQTGQQLGliRAER-RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQL 755
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAK--KAEEeRNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  756 AQSLQDQEAQMDILQEA-----LHEKNTLSEERAQLLAKQ-EALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 829
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAkkadeAKKKAEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  830 TQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDT 909
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  910 LSLSLAEEKEAAARWMEQQKELLTRSAADReaLQGEIQNLKQERDEsLLQLEHEMQQALSLKDAEKSLLSKELSGAhrEL 989
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADE--AKKKAEEAKKKADE-AKKAAEAKKKADEAKKAEEAKKADEAKKA--EE 1532

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  990 ERARQEAQNQQVQAEATVTTMTKELRTLQ--VQFEEAISTHQREADTLR--EKLREIAAERSSVRREAEELQAQLNVAHE 1065
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEekKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1066 RLAElRQELQASEESREGLQREALGARRALEDEVQEKdvlqhsNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQV 1145
Cdd:PTZ00121 1613 KKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1146 AAQKEAYELRTRLQELERAQRDTRRKLQERHR--QVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAE 1223
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

                         730
                  ....*....|.
gi 568909977 1224 AQAAHDGVQKE 1234
Cdd:PTZ00121 1766 EEKKAEEIRKE 1776
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 441-1193 2.64e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 68.94  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   441 QELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLS-QASVHLLEREKEALETTMEE 519
Cdd:TIGR02169  240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGElEAEIASLERSIAEKERELED 319

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   520 LRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALS---- 595
Cdd:TIGR02169  320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEklkr 399

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   596 ---SMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 672
Cdd:TIGR02169  400 einELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   673 QLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKE-------TCGHL----EQKQDHLE-------KQVVLLGQEN 734
Cdd:TIGR02169  480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLgsvgERYATAIEvaagnrlNNVVVEDDAV 559

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   735 AQL------REQVGQVT----NKKQALEKQLAQSLQDQ----------------------------------------EA 764
Cdd:TIGR02169  560 AKEaiellkRRKAGRATflplNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgKY 639

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   765 QMDILQEALHEKN-----------TLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQE 833
Cdd:TIGR02169  640 RMVTLEGELFEKSgamtggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   834 QLEGKAEAAQLARRALQVEIERLKSDWEVREtklqlhlgqlqqqaaqqeqeaqlalerqelahtEDLARLHREKDTLSLS 913
Cdd:TIGR02169  720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLE---------------------------------QEIENVKSELKELEAR 766

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   914 LAEEKEAAARWMEQQKELLTRSAADR-EALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEKSLLSKELsgahRELERA 992
Cdd:TIGR02169  767 IEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLR-EIEQKLNRLTLEKEYLEKEI----QELQEQ 841

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   993 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEaisthqreadtLREKLREIAAERSSVRREAEELQAQLNVAHERlaelRQ 1072
Cdd:TIGR02169  842 RIDLKEQIKSIEKEIENLNGKKEELEEELEE-----------LEAALRDLESRLGDLKKERDELEAQLRELERK----IE 906

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1073 ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQekasLKRSKEEQEQKLLLLQEAQVAAQKEAY 1152
Cdd:TIGR02169  907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED----VQAELQRVEEEIRALEPVNMLAIQEYE 982

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|.
gi 568909977  1153 ELRTRLQELEraqrDTRRKLQERHRQVRTLEAENQRKRQEV 1193
Cdd:TIGR02169  983 EVLKRLDELK----EKRAKLEEERKAILERIEEYEKKKREV 1019
PTZ00121 PTZ00121
MAEBL; Provisional
 433-1233 3.33e-11

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 68.63  E-value: 3.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  433 IERRQQREQELRLRLESSQEEAAGLREQLSgyrQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEA 512
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDFDAKEDNRA---DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKA 1136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  513 lettmEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASqgRVEQLEEKVSGLRKELATSRE 592
Cdd:PTZ00121 1137 -----EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR--KAEELRKAEDARKAEAARKAE 1209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  593 ALSSMQLQRdilETEKESLHGALAQAESGNADLEllvTRLKAEGMEQQDSLAKmaalLEGLSQDKGTLNHLALQLEQER- 671
Cdd:PTZ00121 1210 EERKAEEAR---KAEDAKKAEAVKKAEEAKKDAE---EAKKAEEERNNEEIRK----FEEARMAHFARRQAAIKAEEARk 1279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  672 -DQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRS--LKETCGHLEQKQDHLEKQvvllgqenAQLREQVGQVTNKK 748
Cdd:PTZ00121 1280 aDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADAAKKK--------AEEAKKAAEAAKAE 1351

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  749 QALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRaeRNSLENSLFEAQRLTTQL 828
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK--KAAAAKKKADEAKKKAEE 1429

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  829 QTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREkd 908
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE-- 1507

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  909 tlslslAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE-LSGAHR 987
Cdd:PTZ00121 1508 ------AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdKNMALR 1581

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  988 ELERARQ--EAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELqaqlnvahe 1065
Cdd:PTZ00121 1582 KAEEAKKaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL--------- 1652

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1066 RLAELRQELQASEESR--EGLQREALGARRALEDEVQEKDVLQHSNTELRasihRAEQekasLKRSKEEQEQKLLLLQEA 1143
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKkaEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEE----LKKKEAEEKKKAEELKKA 1724

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1144 QVAAQKEAYELRtRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDaQHRQKNLQESLELQRQVAE 1223
Cdd:PTZ00121 1725 EEENKIKAEEAK-KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKD 1802

                         810
                  ....*....|
gi 568909977 1224 AQAAHDGVQK 1233
Cdd:PTZ00121 1803 IFDNFANIIE 1812
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 423-1208 5.64e-11

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 67.84  E-value: 5.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   423 HPALQAVQAAIERRQQREQELRLRLESSQEeaagLREQLSGY-RQELRTSQRLLQDRAQEHEDL--LGQLEAQRQEAQLS 499
Cdd:pfam15921   70 YPGKEHIERVLEEYSHQVKDLQRRLNESNE----LHEKQKFYlRQSVIDLQTKLQEMQMERDAMadIRRRESQSQEDLRN 145

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   500 QA--SVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRrSLLLRAEQKA----------------ELAQQSER 561
Cdd:pfam15921  146 QLqnTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR-SILVDFEEASgkkiyehdsmstmhfrSLGSAISK 224

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   562 SLRELEAS----QGRVEQLEEKVSGLRKELATSREALssMQLQRDILE-------------TEKESlhGALAQAESGNAD 624
Cdd:pfam15921  225 ILRELDTEisylKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEqliseheveitglTEKAS--SARSQANSIQSQ 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   625 LELLvtrlkaegmeQQDSLAKMAALLEGLSQDKGTLNHLalqleqeRDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRA 704
Cdd:pfam15921  301 LEII----------QEQARNQNSMYMRQLSDLESTVSQL-------RSELREAKRMYEDKIEELEKQLVLANSELTEART 363

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   705 ERRSLKETCGHLEQKQDHL-------EKQVVLLGQENAQL--------------REQVGQVTNKKQALEKQLAQSLQDQE 763
Cdd:pfam15921  364 ERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKRLwdrdtgnsitidhlRRELDDRNMEVQRLEALLKAMKSECQ 443

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   764 AQMDILQEALHEKNTLSEERAQLLAKqeaLERHSELVTKEAADLRAERNSLENSlfeaqrlttqlQTQQEQLEGKAEAAQ 843
Cdd:pfam15921  444 GQMERQMAAIQGKNESLEKVSSLTAQ---LESTKEMLRKVVEELTAKKMTLESS-----------ERTVSDLTASLQEKE 509

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   844 LARRALQVEIERLKSDWEVretKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAAR 923
Cdd:pfam15921  510 RAIEATNAEITKLRSRVDL---KLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAG 586

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   924 WMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMqqalslkdAEKSLLSKELSGAHRELERARQEAQNQQVQA 1003
Cdd:pfam15921  587 AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKDIKQERDQL 658

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1004 EATVTTMTKELRTLQVQFEeaisthqreadTLREKLREIAAERSSVrreAEELQAQLNVAHERLAELRQELQASEESREG 1083
Cdd:pfam15921  659 LNEVKTSRNELNSLSEDYE-----------VLKRNFRNKSEEMETT---TNKLKMQLKSAQSELEQTRNTLKSMEGSDGH 724

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1084 LQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1163
Cdd:pfam15921  725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKE 804

                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 568909977  1164 AQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQ 1208
Cdd:pfam15921  805 KVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 849
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 125-787 1.52e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.50  E-value: 1.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  125 QRLQARLDTTEARLRKSELEHsmdLEEALSRLEASQQRsmgLSQVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRK 204
Cdd:COG1196   216 RELKEELKELEAELLLLKLRE---LEAELEELEAELEE---LEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  205 LELQESQRLSLRQprDILPLWRQAKALQTHLAELRASTERgLTDVQADMTRTAQRLHMACLNLDSHLRLTASSMtSDLEQ 284
Cdd:COG1196   290 EYELLAELARLEQ--DIARLEERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAEL-AEAEE 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  285 RLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLsvqkEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLH 364
Cdd:COG1196   366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL----EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  365 HVLASIKEVAQsdamcpelawsssiEVREAQARLRSPprsvsphqrmspartssptslhpaLQAVQAAIERRQQREQELR 444
Cdd:COG1196   442 EALEEAAEEEA--------------ELEEEEEALLEL------------------------LAELLEEAALLEAALAELL 483

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  445 LRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTmeELRAKA 524
Cdd:COG1196   484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED--DEVAAA 561

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  525 DIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRdiL 604
Cdd:COG1196   562 AIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR--A 639

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  605 ETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDkgtlnhlALQLEQERDQLREQQKMLQQE 684
Cdd:COG1196   640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE-------ELELEEALLAEEEEERELAEA 712

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  685 QAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEK--QLAqsLQDQ 762
Cdd:COG1196   713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnLLA--IEEY 790

                         650       660
                  ....*....|....*....|....*
gi 568909977  763 EAQMDILQEALHEKNTLSEERAQLL 787
Cdd:COG1196   791 EELEERYDFLSEQREDLEEARETLE 815
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 542-1283 2.36e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.86  E-value: 2.36e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   542 RRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSR----EALSSMQLQRDILETE-------KES 610
Cdd:TIGR02169  155 RRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRrereKAERYQALLKEKREYEgyellkeKEA 234

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   611 LHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLS---QDKGTLNHLALQ-----LEQERDQLREQQKMLQ 682
Cdd:TIGR02169  235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkkiKDLGEEEQLRVKekigeLEAEIASLERSIAEKE 314

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   683 QEQAGMREQLTQtgqqlglIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQ 762
Cdd:TIGR02169  315 RELEDAEERLAK-------LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   763 EAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAA 842
Cdd:TIGR02169  388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   843 QLARRALQVEIERLKsdwevRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHrekDTLS-LSLAEEKEAA 921
Cdd:TIGR02169  468 EQELYDLKEEYDRVE-----KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH---GTVAqLGSVGERYAT 539

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   922 ARWMEQQKELLTRSAADREALQGEIQNLKQ-----------------ERDESLLQLEHEMQQALSLKDAEK--------- 975
Cdd:TIGR02169  540 AIEVAAGNRLNNVVVEDDAVAKEAIELLKRrkagratflplnkmrdeRRDLSILSEDGVIGFAVDLVEFDPkyepafkyv 619

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   976 ---SLLSKELSGAHRELERARQEAQNQQVQAEATVTT----MTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSS 1048
Cdd:TIGR02169  620 fgdTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1049 VRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKR 1128
Cdd:TIGR02169  700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1129 SKEEQEQKLLLLQEAQVaaQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQhRQ 1208
Cdd:TIGR02169  780 ALNDLEARLSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK-EI 856

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1209 KNLQESL-ELQRQVAEAQAA-------HDGVQKEVLGLRQKLAEVEA---SGETRAKQLEGHLCESQRAEQTLQAELCRI 1277
Cdd:TIGR02169  857 ENLNGKKeELEEELEELEAAlrdlesrLGDLKKERDELEAQLRELERkieELEAQIEKKRKRLSELKAKLEALEEELSEI 936


                   ....*.
gi 568909977  1278 TRKLQE 1283
Cdd:TIGR02169  937 EDPKGE 942
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
435-977 6.58e-10

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 64.29  E-value: 6.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  435 RRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTsqrlLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALE 514
Cdd:PRK02224  182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERREELETLE 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  515 TTMEELRAK--ADIREAETQKLEVtnAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSRE 592
Cdd:PRK02224  258 AEIEDLRETiaETEREREELAEEV--RDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  593 ALSSmqlqrdiLETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERD 672
Cdd:PRK02224  336 AAQA-------HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  673 QLREQQKMLQQEQAGMREQLTQTgqqlgliRAERRSLKETCGHLEQKQDhlEKQVVLLGQENAQlREQVGQVTNKKQALE 752
Cdd:PRK02224  409 NAEDFLEELREERDELREREAEL-------EATLRTARERVEEAEALLE--AGKCPECGQPVEG-SPHVETIEEDRERVE 478

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  753 KqLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQ 832
Cdd:PRK02224  479 E-LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  833 EQLEGKAEAAQLARRALQvEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLH-REKDTLS 911
Cdd:PRK02224  558 EAAAEAEEEAEEAREEVA-ELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERlAEKRERK 636

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977  912 LSLAEEKEAAArwMEQQKELLTRSAADREALQGEIQNLKQERDESLLQ---LEHEMQQALSLKDAEKSL 977
Cdd:PRK02224  637 RELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREAL 703
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 451-798 1.53e-09

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 63.05  E-value: 1.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  451 QEEAAGLREQLSGYRQELRTSQRLL---QDRAQEHEDLLGQLEAQRQ--EAQLSQASVHL------------LEREKEAL 513
Cdd:COG3096   277 ANERRELSERALELRRELFGARRQLaeeQYRLVEMARELEELSARESdlEQDYQAASDHLnlvqtalrqqekIERYQEDL 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  514 ETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELA----------------QQSERSLRE------------ 565
Cdd:COG3096   357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiqyQQAVQALEKaralcglpdltp 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  566 ------LEASQGRVEQLEEKVSGLRKELATSREALS----SMQLQRDIL-ETEKESLHGALAQAESGNADLELLVTRLKA 634
Cdd:COG3096   437 enaedyLAAFRAKEQQATEEVLELEQKLSVADAARRqfekAYELVCKIAgEVERSQAWQTARELLRRYRSQQALAQRLQQ 516

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  635 EGMEQQD------SLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRS 708
Cdd:COG3096   517 LRAQLAEleqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKE 596

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  709 LKETCGHLEQKQDHLEkqvvllgqenaQLREQVGqvtnkkqalekqlaQSLQDQEAQMDILQEALHEKNTLSEERAQLLA 788
Cdd:COG3096   597 LAARAPAWLAAQDALE-----------RLREQSG--------------EALADSQEVTAAMQQLLEREREATVERDELAA 651

                         410
                  ....*....|
gi 568909977  789 KQEALERHSE 798
Cdd:COG3096   652 RKQALESQIE 661
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 88-617 1.62e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.03  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   88 AREESELLQEELTRLEDLLAQADAEREELASRCHMVSQRLQARLDTTEARLRKSELEhsmdLEEALSRLEASQQRSMGLS 167
Cdd:COG1196   325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL----EELAEELLEALRAAAELAA 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  168 QVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQPRDILPLWRQAKALQTHLAELRASTERGLT 247
Cdd:COG1196   401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  248 DVQADMTRTAQRLHMACLNLDSHLRLTASSMTSDLEQRLREQAREMLQLQGQWAAEKVALQARLSEqtLLVEKLSVQKEQ 327
Cdd:COG1196   481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA--ALQNIVVEDDEV 558

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  328 GERAILTLKsdiQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQARLRspprsvsp 407
Cdd:COG1196   559 AAAAIEYLK---AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL-------- 627

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  408 hqrmspartssptslhpalqaVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLG 487
Cdd:COG1196   628 ---------------------VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  488 QLEAQRQEAQLSQASVHLLEREKEALEttmEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELE 567
Cdd:COG1196   687 RLAEEELELEEALLAEEEEERELAEAE---EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977  568 ASQGRVEQLEEKVSGLRK-------ELATSREALSSMQLQRDILETEKESLHGALAQ 617
Cdd:COG1196   764 ELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQREDLEEARETLEEAIEE 820
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
980-1569 1.89e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 63.01  E-value: 1.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  980 KELSGAHRELERARQEAQnqqvqaeatvttMTKELRTLQVQFEEAISThQREADTLREKLR--EIAAERSSVRREAEELQ 1057
Cdd:COG4913   235 DDLERAHEALEDAREQIE------------LLEPIRELAERYAAARER-LAELEYLRAALRlwFAQRRLELLEAELEELR 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1058 AQLNVAHERLAELRQELQASEESREGLQREALGArraledEVQEKDvlqhsntELRASIHRAEQEKASLKRSKEEQEQKL 1137
Cdd:COG4913   302 AELARLEAELERLEARLDALREELDELEAQIRGN------GGDRLE-------QLEREIERLERELEERERRRARLEALL 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1138 LLLQEAQVAAQKEAYELR----TRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS---RDAQHRQKN 1210
Cdd:COG4913   369 AALGLPLPASAEEFAALRaeaaALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSnipARLLALRDA 448

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1211 LQESLELQR----------QVAEAQAA-HDGVQKEVLGLRQKL-----AEVEASGETRAKQLEGHLcESQRAEQTLqael 1274
Cdd:COG4913   449 LAEALGLDEaelpfvgeliEVRPEEERwRGAIERVLGGFALTLlvppeHYAAALRWVNRLHLRGRL-VYERVRTGL---- 523

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1275 critRKLQEASNQADSLQRSLDNACSRVHV-LEQELAKAEGARC-NAEAQLgrlwstlcsglgqsrnllaspKRPHSPTT 1352
Cdd:COG4913   524 ----PDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCvDSPEEL---------------------RRHPRAIT 578

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1353 GSSQTRPGRQRTSPPTRSYSPARWpspvpvdpkseVIdVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1432
Cdd:COG4913   579 RAGQVKGNGTRHEKDDRRRIRSRY-----------VL-GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQER 646

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1433 RLRLQS---------RVEQLQRDLADAEEGQRRAESA---LQSAQAARALQKEALQRLETEHlasaRAAGQERRRLQEQV 1500
Cdd:COG4913   647 REALQRlaeyswdeiDVASAEREIAELEAELERLDASsddLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKEL 722

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977 1501 DTLRQALEESSRPSQSLADKGRL-LEQPLQQVLPHSRRDRAE---RRALREQTTSLRTERARLQGELAALRTR 1569
Cdd:COG4913   723 EQAEEELDELQDRLEAAEDLARLeLRALLEERFAAALGDAVErelRENLEERIDALRARLNRAEEELERAMRA 795
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 1126-1696 2.26e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 62.65  E-value: 2.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1126 LKRSKEEQEQKLLLLQEAQVAAQKEAY-----ELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQV 1200
Cdd:COG1196   218 LKEELKELEAELLLLKLRELEAELEELeaeleELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1201 SRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRK 1280
Cdd:COG1196   298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE----EAEAELAEAEEALLEAEAE 373

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1281 LQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRLwstlcsglgqsrnllaspkrphspttgssqtrpg 1360
Cdd:COG1196   374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL---------------------------------- 419

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1361 rqrtspptrsysparwpspvpvdpksevidvafvRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRV 1440
Cdd:COG1196   420 ----------------------------------EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1441 EQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADK 1520
Cdd:COG1196   466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA 545

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1521 GRLLEQPlqqvlphsRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSH 1600
Cdd:COG1196   546 AALQNIV--------VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1601 LHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQVASL 1680
Cdd:COG1196   618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697

                         570
                  ....*....|....*.
gi 568909977 1681 KKRLDKEVWQRQQQAH 1696
Cdd:COG1196   698 ALLAEEEEERELAEAE 713
PTZ00121 PTZ00121
MAEBL; Provisional
 425-1111 6.42e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 61.31  E-value: 6.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  425 ALQAVQAAIERRQQ--REQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQ-DRAQEHEDLLGQLEAQRQEAQLSQA 501
Cdd:PTZ00121 1148 AEDAKRVEIARKAEdaRKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKaEAARKAEEERKAEEARKAEDAKKAE 1227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  502 SVHLLE--REKEALETTMEELRAKADIREAETQKLEvtnAELRRSLLLRAEQKAElAQQSERSLRELEASQGRVEQLEEK 579
Cdd:PTZ00121 1228 AVKKAEeaKKDAEEAKKAEEERNNEEIRKFEEARMA---HFARRQAAIKAEEARK-ADELKKAEEKKKADEAKKAEEKKK 1303

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  580 VSGLRKElatSREALSSMQLQRDILETEKESlHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGT 659
Cdd:PTZ00121 1304 ADEAKKK---AEEAKKADEAKKKAEEAKKKA-DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  660 LNHLALQLEQERDQLREQQKMlqqeqagmrEQLTQTGQQLGLIRAERRSLKETCGHLEQKQ--DHLEKQVvllgqENAQL 737
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKA---------EEDKKKADELKKAAAAKKKADEAKKKAEEKKkaDEAKKKA-----EEAKK 1445

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  738 REQVgqvtnKKQALEKQLAQSLQDQEAQMDILQEAlhekntlsEERAQLLAKQEALERHSELVTKEAADLR--AERNSLE 815
Cdd:PTZ00121 1446 ADEA-----KKKAEEAKKAEEAKKKAEEAKKADEA--------KKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKA 1512

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  816 NSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELA 895
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  896 HTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKElltrsaadREALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEK 975
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK--------AEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKA 1663

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  976 SLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERssVRREAEE 1055
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE--AKKEAEE 1741

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977 1056 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTE 1111
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
PTZ00121 PTZ00121
MAEBL; Provisional
 600-1325 8.06e-09

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 60.93  E-value: 8.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  600 QRDILETEKESLHGALAQAESGNADLEllvtRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQK 679
Cdd:PTZ00121 1044 EKDIIDEDIDGNHEGKAEAKAHVGQDE----GLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEE 1119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  680 MLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSL 759
Cdd:PTZ00121 1120 AKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  760 QDQEAQmdilQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAE--RNSLENSLFEAQRLTTQLQTQQEQLEG 837
Cdd:PTZ00121 1200 RKAEAA----RKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEeeRNNEEIRKFEEARMAHFARRQAAIKAE 1275

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  838 KAEAAQLARRALQV-EIERLKSDWEVRETklqlhlgqlqqqaaqqeqeaqlalerQELAHTEDLARLHREKDTLSLSLAE 916
Cdd:PTZ00121 1276 EARKADELKKAEEKkKADEAKKAEEKKKA--------------------------DEAKKKAEEAKKADEAKKKAEEAKK 1329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  917 EKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKdaEKSLLSKELSGAHRELERARQEA 996
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK--KKAEEKKKADEAKKKAEEDKKKA 1407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  997 QNQQVQAEATvttmtKELRTLQVQFEEaisthQREADTLREKLREiAAERSSVRREAEELQAQLNvAHERLAELRQELQA 1076
Cdd:PTZ00121 1408 DELKKAAAAK-----KKADEAKKKAEE-----KKKADEAKKKAEE-AKKADEAKKKAEEAKKAEE-AKKKAEEAKKADEA 1475

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1077 SEESREglQREALGARRALEDEVQEKDVLQHSNTELRAS--IHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYEL 1154
Cdd:PTZ00121 1476 KKKAEE--AKKADEAKKKAEEAKKKADEAKKAAEAKKKAdeAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1155 RTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQ-ESLELQRQVAEAQAAHDGVQK 1233
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKK 1633

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1234 EVLGLRQKLAEveasgetrakqleghlcESQRAEQTLQAELCRITRKLQEASNQADSLQRSldnacsrvhvleQELAKAE 1313
Cdd:PTZ00121 1634 KVEQLKKKEAE-----------------EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA------------EEAKKAE 1684

                         730
                  ....*....|..
gi 568909977 1314 GARCNAEAQLGR 1325
Cdd:PTZ00121 1685 EDEKKAAEALKK 1696
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 425-719 8.64e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.85  E-value: 8.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   425 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQEL---RTSQRLLQDRAQEHEDLLGQLEAQRQ--EAQLS 499
Cdd:TIGR02169  710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIenvKSELKELEARIEELEEDLHKLEEALNdlEARLS 789

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   500 QASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEK 579
Cdd:TIGR02169  790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   580 VSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGT 659
Cdd:TIGR02169  870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977   660 LNHLAlQLEQERDQLREQQKMLQ-------QEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQK 719
Cdd:TIGR02169  950 ELSLE-DVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
 921-1251 1.95e-08

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 467957 [Multi-domain]  Cd Length: 1848  Bit Score: 59.85  E-value: 1.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  921 AARWMEQQKELLTRSAADREALQG--EIQNLKQERD------ESLLQLEHEMQQALSLKDAEKSLLSKELSGAHREleRA 992
Cdd:NF012221 1497 ASAWQQKTLKLTAKAGSNRLEFKGtgHNDGLGYILDnvvatsESSQQADAVSKHAKQDDAAQNALADKERAEADRQ--RL 1574

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  993 RQEAQNQqvqaeatvttmTKELRTLQVQFEeaiSTHQREADTLREklreiaAERSSVRREAEELQAQLNVAHERLAELRQ 1072
Cdd:NF012221 1575 EQEKQQQ-----------LAAISGSQSQLE---STDQNALETNGQ------AQRDAILEESRAVTKELTTLAQGLDALDS 1634

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1073 ELQASEESREGLqREALGARraLEDEVQEK--DVLQHSNTELRAS----IHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1146
Cdd:NF012221 1635 QATYAGESGDQW-RNPFAGG--LLDRVQEQldDAKKISGKQLADAkqrhVDNQQKVKDAVAKSEAGVAQGEQNQANAEQD 1711

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1147 AQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAEAQa 1226
Cdd:NF012221 1712 IDDAKADAEKRKDDALAKQNEAQQAESDANAAANDAQSRGEQDASAAENKANQAQADAKGAKQD--ESDKPNRQGAAGS- 1788

                         330       340
                  ....*....|....*....|....*
gi 568909977 1227 ahdgvqkevlGLRQKLAEVEASGET 1251
Cdd:NF012221 1789 ----------GLSGKAYSVEGVAEP 1803
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
578-1181 4.78e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 58.39  E-value: 4.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  578 EKVSGLRKELATSREALSSMQLQRDILETEKEsLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKmaALLEGLSQDK 657
Cdd:COG4913   228 DALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRLELLE--AELEELRAEL 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  658 GTLNHLALQLEQERDQLREQQKMLQQEQAGmreqltQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQL 737
Cdd:COG4913   305 ARLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  738 REQVgqvtnkkQALEKQLAQSLQDQEAQMDILQEALHE----KNTLSEERAQLLAKQEALERHSELVTKEAADLRAERns 813
Cdd:COG4913   379 AEEF-------AALRAEAAALLEALEEELEALEEALAEaeaaLRDLRRELRELEAEIASLERRKSNIPARLLALRDAL-- 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  814 lenslfeaqrlttqlqtqqeqlegkAEAAQLARRALQ-----VEIERLKSDWE---------------VRETKLQLHLGQ 873
Cdd:COG4913   450 -------------------------AEALGLDEAELPfvgelIEVRPEEERWRgaiervlggfaltllVPPEHYAAALRW 504

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  874 LQQQAAQQEQEAQLALERQELAHTEDLarlhrEKDTLSLSLAEEKEAAARWMEQQkelltrsaadreaLQGEIQNLKQER 953
Cdd:COG4913   505 VNRLHLRGRLVYERVRTGLPDPERPRL-----DPDSLAGKLDFKPHPFRAWLEAE-------------LGRRFDYVCVDS 566

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  954 DESLLQLEHEMQQALSLKDaeksllskelSGAHRELERARQEAQNQQ--VQAEATVTTMTKELRTLqvqfEEAISTHQRE 1031
Cdd:COG4913   567 PEELRRHPRAITRAGQVKG----------NGTRHEKDDRRRIRSRYVlgFDNRAKLAALEAELAEL----EEELAEAEER 632

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1032 ADTLREKLREIAAERSSVRREAEELQAQLNV--AHERLAELRQELQASEESR---EGLQREALGARRALEDEVQEKDVLQ 1106
Cdd:COG4913   633 LEALEAELDALQERREALQRLAEYSWDEIDVasAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELK 712

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977 1107 HSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRT 1181
Cdd:COG4913   713 GEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEE 787
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 88-787 5.42e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.14  E-value: 5.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977    88 AREESELLQEELTRLEDLLAQADAEREELASRCHMVSQRLQaRLDTTEARLRKSELEHSMDLEEAlsRLEASQQRSMGLS 167
Cdd:TIGR02168  370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELE 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   168 QVNTLLRQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQprdilpLWRQAKALQTHLAELRASTER--G 245
Cdd:TIGR02168  447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER------LQENLEGFSEGVKALLKNQSGlsG 520

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   246 LTDVQADMTRTAQRLHmACLNLDSHLRLTASSMTSDleqrlrEQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQK 325
Cdd:TIGR02168  521 ILGVLSELISVDEGYE-AAIEAALGGRLQAVVVENL------NAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   326 EQGERAILTLKSDIQRlksrrsggqlAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQarlrspprSV 405
Cdd:TIGR02168  594 LKNIEGFLGVAKDLVK----------FDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGD--------LV 655

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   406 SPHQRMSPARTSSPTSlhpaLQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDL 485
Cdd:TIGR02168  656 RPGGVITGGSAKTNSS----ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   486 LGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEvtnaelrrslllraEQKAELAQQSERSLRE 565
Cdd:TIGR02168  732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE--------------AEIEELEAQIEQLKEE 797

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   566 LEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAK 645
Cdd:TIGR02168  798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   646 MAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETC-GHLEQKQDHLE 724
Cdd:TIGR02168  878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAE 957

                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977   725 KQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLL 787
Cdd:TIGR02168  958 ALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1090-1664 8.63e-08

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 57.23  E-value: 8.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1090 GARRALEDEVQEKDVLQ----HSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQ 1165
Cdd:COG4913   239 RAHEALEDAREQIELLEpireLAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL 318

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1166 RDTRRKLQERHRQVRtleaenQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEV 1245
Cdd:COG4913   319 DALREELDELEAQIR------GNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL 392

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1246 EASGETRAKQLEGHLCESQRAEQTLQAELcritrklQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGR 1325
Cdd:COG4913   393 LEALEEELEALEEALAEAEAALRDLRREL-------RELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPFVGE 465

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1326 L---------WSTLCSGL--GQSRNLLASPKRPHSPTTGSSQTRPGRQRTSPPTRSYSPArwPSPVPVDPKSEVIDVAFV 1394
Cdd:COG4913   466 LievrpeeerWRGAIERVlgGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD--PERPRLDPDSLAGKLDFK 543

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1395 RDALRDLVQGLL-----------EAQQERDNSGIQVANLSSQLSE-------------------AERERLRLQSRVEQLQ 1444
Cdd:COG4913   544 PHPFRAWLEAELgrrfdyvcvdsPEELRRHPRAITRAGQVKGNGTrhekddrrrirsryvlgfdNRAKLAALEAELAELE 623

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1445 RDLADAEEGQRRAESALQSAQAaralQKEALQRLE--TEHLASARAAGQERRRLQEQvdtlRQALEESSRPSQSLADKGR 1522
Cdd:COG4913   624 EELAEAEERLEALEAELDALQE----RREALQRLAeySWDEIDVASAEREIAELEAE----LERLDASSDDLAALEEQLE 695

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1523 LLEQPLQQVlphsrrdRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQetLKKEEDRAMLGAKKELLLQSLSHL- 1601
Cdd:COG4913   696 ELEAELEEL-------EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED--LARLELRALLEERFAAALGDAVERe 766

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977 1602 -----HQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAA-----------EAQRLHEAQLQATQALESCEQ 1664
Cdd:COG4913   767 lrenlEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESlpeylalldrlEEDGLPEYEERFKELLNENSI 845
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 1388-1694 1.80e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 56.22  E-value: 1.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1388 VIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAA 1467
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1468 RALQKEALQRLETEhlasARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRALRE 1547
Cdd:TIGR02168  311 LANLERQLEELEAQ----LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1548 QTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLlqslshlhqevdgalrQSQQLQAQMAELEQAHT 1627
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA----------------ELKELQAELEELEEELE 450

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977  1628 QrLQELAAQHQRDLAAEAQRLHEAQlQATQALESCEQIHQQRVKVLERQVASLKKRLD--KEVWQRQQQ 1694
Cdd:TIGR02168  451 E-LQEELERLEEALEELREELEEAE-QALDAAERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSG 517
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
430-618 2.08e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 56.08  E-value: 2.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  430 QAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQL-EAQRQEAQLSQASVHLLER 508
Cdd:COG4913   266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELdELEAQIRGNGGDRLEQLER 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  509 EKEALETTMEELRAKADIREAETQKLEVTNAELRRSLllrAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELA 588
Cdd:COG4913   346 EIERLERELEERERRRARLEALLAALGLPLPASAEEF---AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422

                         170       180       190
                  ....*....|....*....|....*....|
gi 568909977  589 TSREALSSMQLQRDILETEKESLHGALAQA 618
Cdd:COG4913   423 ELEAEIASLERRKSNIPARLLALRDALAEA 452
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
425-814 2.13e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 55.82  E-value: 2.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  425 ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVH 504
Cdd:PRK02224  238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  505 LLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLR 584
Cdd:PRK02224  318 ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELR 397

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  585 KELATSREALSSMQLQRDILETEKESLHGALAQAEsgnADLEllvtrlkaegmEQQDSLAKMAALLEG-----LSQDKGT 659
Cdd:PRK02224  398 ERFGDAPVDLGNAEDFLEELREERDELREREAELE---ATLR-----------TARERVEEAEALLEAgkcpeCGQPVEG 463

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  660 LNHlALQLEQERDQLREqqkmLQQEQAGMREQLTQTGQQLGliRAErrSLKETCGHLEQKQDHLEKQVVLLGQENAQL-- 737
Cdd:PRK02224  464 SPH-VETIEEDRERVEE----LEAELEDLEEEVEEVEERLE--RAE--DLVEAEDRIERLEERREDLEELIAERRETIee 534

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977  738 -REQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTkEAADLRAERNSL 814
Cdd:PRK02224  535 kRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAEDEIERL 611
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 985-1205 3.58e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.38  E-value: 3.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  985 AHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAisthQREADTLREKLREIAAERSSVRREAEELQAQLNVAH 1064
Cdd:COG4942    21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1065 ERLAELRQE----LQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLL 1140
Cdd:COG4942    97 AELEAQKEElaelLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977 1141 QEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ 1205
Cdd:COG4942   177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
COG5022 COG5022
Myosin heavy chain [General function prediction only];
911-1221 3.76e-07

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 55.47  E-value: 3.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  911 SLSLAEEKEAAARwMEQQKELLTRSAADREALQGEIQNLKQERDE----SLLQLEHEmQQALSLKDAEKSLLSKELSgaH 986
Cdd:COG5022   850 KFGRSLKAKKRFS-LLKKETIYLQSAQRVELAERQLQELKIDVKSisslKLVNLELE-SEIIELKKSLSSDLIENLE--F 925

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  987 RELERARQEAQNQQVQAEATVTTMtkelrtlQVQFEEAISTHQREAdtlreKLREIAAERSSVRREAEELQAQLNVAHER 1066
Cdd:COG5022   926 KTELIARLKKLLNNIDLEEGPSIE-------YVKLPELNKLHEVES-----KLKETSEEYEDLLKKSTILVREGNKANSE 993

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1067 LAELRQELQaseesreglqrEALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQK-LLLLQEAQV 1145
Cdd:COG5022   994 LKNFKKELA-----------ELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKgLLLLENNQL 1062

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1146 AAQKEAYELRTRLQELEraqrDTRRKLQERhrqVRTLEAENQRKRQEVSDLQA-------QVSRDAQHRQKNLQESLELQ 1218
Cdd:COG5022  1063 QARYKALKLRRENSLLD----DKQLYQLES---TENLLKTINVKDLEVTNRNLvkpanvlQFIVAQMIKLNLLQEISKFL 1135


                  ...
gi 568909977 1219 RQV 1221
Cdd:COG5022  1136 SQL 1138
PTZ00121 PTZ00121
MAEBL; Provisional
 392-939 4.54e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 55.15  E-value: 4.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  392 REAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTS 471
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA 1317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  472 QRLlQDRAQEHEDLLGQLEAQRQEAQlSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQ 551
Cdd:PTZ00121 1318 DEA-KKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  552 ---KAELAQQSERSLRELEASQGRVEQLEEKVSGLRK--ELATSREALSSMQLQRDILEtEKESLHGALAQAESGNADLE 626
Cdd:PTZ00121 1396 akkKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAE-EAKKAEEAKKKAEEAKKADE 1474

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  627 LlvtRLKAEGMEQQDSLAKMAAL-------LEGLSQDKGTLNHLALQLEQER-DQLREQQKMLQQEQAGMREQLTQTGQq 698
Cdd:PTZ00121 1475 A---KKKAEEAKKADEAKKKAEEakkkadeAKKAAEAKKKADEAKKAEEAKKaDEAKKAEEAKKADEAKKAEEKKKADE- 1550

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  699 lgLIRAERRSLKETCGHLEQKQDHLEKQVVLL--GQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEK 776
Cdd:PTZ00121 1551 --LKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  777 NTLSEERAQLLAKQEALERHSELVTKE-------AADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRAL 849
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAeeenkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  850 QVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQK 929
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

                         570
                  ....*....|
gi 568909977  930 ELLTRSAADR 939
Cdd:PTZ00121 1789 DEKRRMEVDK 1798
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 522-758 5.45e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 54.00  E-value: 5.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  522 AKADIREAETQKLEvtnaELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQR 601
Cdd:COG4942    17 AQADAAAEAEAELE----QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  602 DILETEKESLHGALAQAesgNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKML 681
Cdd:COG4942    93 AELRAELEAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977  682 QQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQS 758
Cdd:COG4942   170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 101-795 5.80e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.69  E-value: 5.80e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   101 RLEDLLAQADAEREELASRchmvSQRLQARLDTTEARLRKSELEhsmdLEEALSRLEASQQRSMGLSQVNTLLRQQLEHM 180
Cdd:TIGR02169  305 SLERSIAEKERELEDAEER----LAKLEAEIDKLLAEIEELERE----IEEERKRRDKLTEEYAELKEELEDLRAELEEV 376

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   181 QKANDTLARELTRATHSLVHLQRKLE---------LQESQRLSLRQPR---------------------DILPLWRQAKA 230
Cdd:TIGR02169  377 DKEFAETRDELKDYREKLEKLKREINelkreldrlQEELQRLSEELADlnaaiagieakineleeekedKALEIKKQEWK 456

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   231 LQThLAELRASTERGLTDVQADMTRTAQRLHMACLNLDshlRLTASSMTSDLEQRLREQAREMLQLQGQ----------- 299
Cdd:TIGR02169  457 LEQ-LAADLSKYEQELYDLKEEYDRVEKELSKLQRELA---EAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgs 532

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   300 -----WAAEKVALQARLseQTLLVEKLSVqkeqGERAILTLKSD---------IQRLKSRRSGGQL-----AVDELRDEV 360
Cdd:TIGR02169  533 vgeryATAIEVAAGNRL--NNVVVEDDAV----AKEAIELLKRRkagratflpLNKMRDERRDLSIlsedgVIGFAVDLV 606

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   361 ESLHHVLASIKEVAQSDAMCP--ELAWSSSIEVR--EAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAaierr 436
Cdd:TIGR02169  607 EFDPKYEPAFKYVFGDTLVVEdiEAARRLMGKYRmvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRE----- 681

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   437 qqREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETT 516
Cdd:TIGR02169  682 --RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   517 MEELRAKADIREAETQKLEVTNAELRRSLllraeqkaelaqqserSLRELEASQGRVEQLEEKVSGLRKELATSREALSS 596
Cdd:TIGR02169  760 LKELEARIEELEEDLHKLEEALNDLEARL----------------SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   597 MQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGtlnhlalQLEQERDQLRE 676
Cdd:TIGR02169  824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG-------DLKKERDELEA 896

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   677 QQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENaQLREQVGQVTNKKQALEKQLA 756
Cdd:TIGR02169  897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEPVNM 975

                          730       740       750
                   ....*....|....*....|....*....|....*....
gi 568909977   757 QSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALER 795
Cdd:TIGR02169  976 LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
895-1321 6.34e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.54  E-value: 6.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  895 AHTEDLARLHREKDTLSLSLAE-EKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDA 973
Cdd:COG4913   259 ELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  974 EKSLLSKELSGAHRELERARQEAQNQQVQAEA---TVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVR 1050
Cdd:COG4913   339 RLEQLEREIERLERELEERERRRARLEALLAAlglPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1051 REAEELQAQLNV-----------AHERLAELRQELQASEE------------SREGLQREA----LG--ARRALEDEVQE 1101
Cdd:COG4913   419 RELRELEAEIASlerrksniparLLALRDALAEALGLDEAelpfvgelievrPEEERWRGAiervLGgfALTLLVPPEHY 498

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1102 KDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRL------------QELERAQR--- 1166
Cdd:COG4913   499 AAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELgrrfdyvcvdspEELRRHPRait 578

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1167 --------------DTRRKLQERH-------RQVRTLEAENQRKRQEVSDLQAQVsRDAQHRQKNLQESLELQRQVAEAQ 1225
Cdd:COG4913   579 ragqvkgngtrhekDDRRRIRSRYvlgfdnrAKLAALEAELAELEEELAEAEERL-EALEAELDALQERREALQRLAEYS 657

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1226 AA---HDGVQKEVLGLRQKLAEVEASGetrakqleGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDNAcsrv 1302
Cdd:COG4913   658 WDeidVASAEREIAELEAELERLDASS--------DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA---- 725

                         490
                  ....*....|....*....
gi 568909977 1303 hvlEQELAKAEGARCNAEA 1321
Cdd:COG4913   726 ---EEELDELQDRLEAAED 741
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
535-750 8.74e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.15  E-value: 8.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  535 EVTNAELRRSLLLRAEQKAELAQQSERSLRELEA---------SQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILE 605
Cdd:COG4913   243 ALEDAREQIELLEPIRELAERYAAARERLAELEYlraalrlwfAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  606 TEKESLHGALAQaeSGNADLEllvtRLKAEGMEQQDSLAKMAALLEGLSQdkgTLNHLALQLEQERDQLREQQKMLQQEQ 685
Cdd:COG4913   323 EELDELEAQIRG--NGGDRLE----QLEREIERLERELEERERRRARLEA---LLAALGLPLPASAEEFAALRAEAAALL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977  686 AGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQA 750
Cdd:COG4913   394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEA 458
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
433-849 1.35e-06

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 53.23  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  433 IERRQQREQELRlRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL--LEREK 510
Cdd:COG4717    70 LKELKELEEELK-EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELaeLPERL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  511 EALETTMEELRAKADIREAETQKLEVTNAELRRsllLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATS 590
Cdd:COG4717   149 EELEERLEELRELEEELEELEAELAELQEELEE---LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  591 REALSSMQLQRDILEtEKESLHGALAQAESGNADLELLVTRLKAEGMEQQdSLAKMAALLEGLSQDKGTLNHLALQLEQE 670
Cdd:COG4717   226 EEELEQLENELEAAA-LEERLKEARLLLLIAAALLALLGLGGSLLSLILT-IAGVLFLVLGLLALLFLLLAREKASLGKE 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  671 RDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEK-----QVVLLGQENAQLREQVGQVT 745
Cdd:COG4717   304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEleeelQLEELEQEIAALLAEAGVED 383

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  746 NKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAA------DLRAERNSLENSLF 819
Cdd:COG4717   384 EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEEleeeleELREELAELEAELE 463

                         410       420       430
                  ....*....|....*....|....*....|
gi 568909977  820 EAQRLTTQLQTQQEQLEGKAEAAQLARRAL 849
Cdd:COG4717   464 QLEEDGELAELLQELEELKAELRELAEEWA 493
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1423-1643 1.63e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.46  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1423 SSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASAR---AAGQERRRLQEQ 1499
Cdd:COG4942    19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAELRAE 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1500 VDTLRQALEESSRPSQSLADKGRLLE----QPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQ 1575
Cdd:COG4942    99 LEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977 1576 ETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHQRDLAA 1643
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 504-1292 1.73e-06

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 53.05  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   504 HLLEREKEALETTMEELRAKAD-IREAETQKLEVTNAELRRSLLLRAEQKAELAQqsersLRELEASQGRVEQLEEKVSG 582
Cdd:pfam02463  166 RLKRKKKEALKKLIEETENLAElIIDLEELKLQELKLKEQAKKALEYYQLKEKLE-----LEEEYLLYLDYLKLNEERID 240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   583 LRKELATSREALSSMQLQRDILETEKEslhgalaQAESGNADLELLVTRLKAEGMEQQDSLAkmAALLEGLSQDKGTLNH 662
Cdd:pfam02463  241 LLQELLRDEQEEIESSKQEIEKEEEKL-------AQVLKENKEEEKEKKLQEEELKLLAKEE--EELKSELLKLERRKVD 311

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   663 LALQLEQERDQLREQQKMLQQEQAGMREQLTQTgQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVG 742
Cdd:pfam02463  312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKEL-KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   743 QVTNKKQALEKQLAQSLQDQ-EAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEA 821
Cdd:pfam02463  391 KLKEEELELKSEEEKEAQLLlELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   822 QRLTTQLQTQQEQLegkaeaAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLA 901
Cdd:pfam02463  471 EDLLKETQLVKLQE------QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   902 RlhrekdtlSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 981
Cdd:pfam02463  545 I--------STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   982 LSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVqfEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLN 1061
Cdd:pfam02463  617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL--EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1062 VAHERLAELRQELQASEESREGLQREALGARRalEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1141
Cdd:pfam02463  695 LRRQLEIKKKEQREKEELKKLKLEAEELLADR--VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLK 772

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1142 EAQVAAQKEAYELRTRLQELEraqRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQV 1221
Cdd:pfam02463  773 EKELAEEREKTEKLKVEEEKE---EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849

                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568909977  1222 AEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQ 1292
Cdd:pfam02463  850 KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1022-1234 2.11e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.07  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1022 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEdevQE 1101
Cdd:COG4942    26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE---AQ 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1102 KDVLQhsnTELRASIHRAEQEKASLKRSKEEQEQ---KLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQ 1178
Cdd:COG4942   103 KEELA---ELLRALYRLGRQPPLALLLSPEDFLDavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977 1179 VRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKE 1234
Cdd:COG4942   180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 662-1274 2.41e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 52.53  E-value: 2.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   662 HLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKEtcgHLEQKQDHLEKQVVLLGQENAQLREQV 741
Cdd:pfam12128  241 PEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQ---LLRTLDDQWKEKRDELNGELSAADAAV 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   742 GQVTNKKQALEKQLAQSLQDqeaqmDILQEALHEKNtLSEERAQLlakqEALERHSELVTKEAADLRAERNSLENSLfeA 821
Cdd:pfam12128  318 AKDRSELEALEDQHGAFLDA-----DIETAAADQEQ-LPSWQSEL----ENLEERLKALTGKHQDVTAKYNRRRSKI--K 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   822 QRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWevretklqlhlgqlqqQAAQQEQEAQLALERQELAHTEDLA 901
Cdd:pfam12128  386 EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL----------------REQLEAGKLEFNEEEYRLKSRLGEL 449

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   902 RLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKE 981
Cdd:pfam12128  450 KLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQL 529

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   982 LSGAHRELERARQEAQNQQvQAEATVTTMTKELRTLQVQFEEAISTHQREA------DTLREKLREIAAERSSVRREAEE 1055
Cdd:pfam12128  530 FPQAGTLLHFLRKEAPDWE-QSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvklDLKRIDVPEWAASEEELRERLDK 608

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1056 LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEdevQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQ-- 1133
Cdd:pfam12128  609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALK---NARLDLRRLFDEKQSEKDKKNKALAERKDSANERln 685

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1134 ----EQKLLL--LQEAQVAAQKEAYELRTRLQEL---------------------ERAQRDTRRKL--QERHRQVRTLEA 1184
Cdd:pfam12128  686 sleaQLKQLDkkHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallkaaiaaRRSGAKAELKAleTWYKRDLASLGV 765

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1185 ENQ---RKRQEVSDLQAQVSRDAQHRQKNL------QESLELQRQVAEAQAAHdgVQKEVLGLRQKLAEVEASGETRAKQ 1255
Cdd:pfam12128  766 DPDviaKLKREIRTLERKIERIAVRRQEVLryfdwyQETWLQRRPRLATQLSN--IERAISELQQQLARLIADTKLRRAK 843

                          650
                   ....*....|....*....
gi 568909977  1256 LEGHLCESQRAEQTLQAEL 1274
Cdd:pfam12128  844 LEMERKASEKQQVRLSENL 862
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
539-1134 2.51e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.37  E-value: 2.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  539 AELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQA 618
Cdd:PRK03918  168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  619 ESGNADLELLVTRLKaegmEQQDSLAKMAALLEGLSQDKGTLNHLA------LQLEQERDQLREQQKMLQQEQAGMREQL 692
Cdd:PRK03918  248 ESLEGSKRKLEEKIR----ELEERIEELKKEIEELEEKVKELKELKekaeeyIKLSEFYEEYLDELREIEKRLSRLEEEI 323

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  693 TQTGQQLglirAERRSLKETCGHLEQKQDHLEKQVVLLgQENAQLREQVGQVTNKKQALEKQLAqslqdqeaqmdilqea 772
Cdd:PRK03918  324 NGIEERI----KELEEKEERLEELKKKLKELEKRLEEL-EERHELYEEAKAKKEELERLKKRLT---------------- 382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  773 lhekntlSEERAQLLAKQEALERHSELVTKEAADLRAERNSLEnslfeaQRLTTQLQTQQEQLEGKAEAAQLARRALQVE 852
Cdd:PRK03918  383 -------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELK------KEIKELKKAIEELKKAKGKCPVCGRELTEEH 449

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  853 IERLKSDW-----EVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQ 927
Cdd:PRK03918  450 RKELLEEYtaelkRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  928 QKELLTRsaadreaLQGEIQNLKQErdeslLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEaqnqqvqaeaTV 1007
Cdd:PRK03918  530 LKEKLIK-------LKGEIKSLKKE-----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE----------SV 587

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1008 TTMTKELRTLQVQFEEAIsthqrEADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQA-----SEESRE 1082
Cdd:PRK03918  588 EELEERLKELEPFYNEYL-----ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYE 662

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568909977 1083 GLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQE 1134
Cdd:PRK03918  663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 219-597 2.80e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.37  E-value: 2.80e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   219 RDILPLWRQAKALQTHLAELRASTERGLTDVQADMTRTAQrlhmacLNLDSHLRLTASSMTSDLEQRLREQAREMLQLQG 298
Cdd:TIGR02168  677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------LRKELEELSRQISALRKDLARLEAEVEQLEERIA 750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   299 QWAAEKVALQARLSEQTLLVEKLSVQKEQGERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHhvlasikevaqsda 378
Cdd:TIGR02168  751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------------- 816

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   379 mcpelawsssIEVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEaaglR 458
Cdd:TIGR02168  817 ----------EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----R 882

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   459 EQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLE-----REKEALETTMEELRAKADIREAETQK 533
Cdd:TIGR02168  883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevRIDNLQERLSEEYSLTLEEAEALENK 962

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568909977   534 LEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSM 597
Cdd:TIGR02168  963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
746-1257 3.21e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 51.99  E-value: 3.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  746 NKKQALEKQLAQSLQDQE---AQMDILQEALHEKNTLSEERAQLLAKQEALErhselvtKEAADLRAERNSLENSlfeaq 822
Cdd:PRK03918  176 RRIERLEKFIKRTENIEElikEKEKELEEVLREINEISSELPELREELEKLE-------KEVKELEELKEEIEEL----- 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  823 rlttqlQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTE-DLA 901
Cdd:PRK03918  244 ------EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEkRLS 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  902 RLHREKDTLS--LSLAEEKEAAARWMEQQKELLTRSAADRE----------ALQGEIQNLKQERDESLLQLEHEMQQALS 969
Cdd:PRK03918  318 RLEEEINGIEerIKELEEKEERLEELKKKLKELEKRLEELEerhelyeeakAKKEELERLKKRLTGLTPEKLEKELEELE 397

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  970 LKDAEKSLLSKELSGAHRELER---ARQEAQNQQVQAEATVTTMTKELRtlQVQFEEAISTHQREADTLREKLREIAAER 1046
Cdd:PRK03918  398 KAKEEIEEEISKITARIGELKKeikELKKAIEELKKAKGKCPVCGRELT--EEHRKELLEEYTAELKRIEKELKEIEEKE 475

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1047 SSVRREAEELQAQLNVAHE--RLAELRQELQASEESREGLQREAL------------------GARRALEDEVQEKDVLQ 1106
Cdd:PRK03918  476 RKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELekkaeeyeklkekliklkGEIKSLKKELEKLEELK 555

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1107 HSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYE-------LRTRLQELERAQRDTRRKLQERHRQV 1179
Cdd:PRK03918  556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNeylelkdAEKELEREEKELKKLEEELDKAFEEL 635

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977 1180 RTLEAENQRKRQEVSDLQAQVSRDAQHRQKNlqESLELQRQVAeaqaahdGVQKEVLGLRQKLAEVEASGETRAKQLE 1257
Cdd:PRK03918  636 AETEKRLEELRKELEELEKKYSEEEYEELRE--EYLELSRELA-------GLRAELEELEKRREEIKKTLEKLKEELE 704
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 449-677 3.44e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 51.30  E-value: 3.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  449 SSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIRE 528
Cdd:COG4942    17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  529 AETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEAsqgRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEK 608
Cdd:COG4942    97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR---RLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977  609 ESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQ 677
Cdd:COG4942   174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 438-1185 4.63e-06

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 51.59  E-value: 4.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   438 QREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDllgqlEAQRQEAQLSQASVHLLEREKEALETTM 517
Cdd:TIGR00606  340 QEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGP-----FSERQIKNFHTLVIERQEDEAKTAAQLC 414

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   518 EELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELA----TSREA 593
Cdd:TIGR00606  415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERelskAEKNS 494

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   594 LSSMQLQRDI-LETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLA------LQ 666
Cdd:TIGR00606  495 LTETLKKEVKsLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpnkKQ 574

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   667 LEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQK------QDHLEKQVVLLGQENAQLREQ 740
Cdd:TIGR00606  575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQ 654

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   741 VGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFE 820
Cdd:TIGR00606  655 RAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPG 734

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   821 AQRLTTQLQTQQEQLEGKaeaaqlaRRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTE-D 899
Cdd:TIGR00606  735 RQSIIDLKEKEIPELRNK-------LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVErK 807

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   900 LARLHREKDTLSLSLA--------EEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLK 971
Cdd:TIGR00606  808 IAQQAAKLQGSDLDRTvqqvnqekQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFE 887

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   972 DAeksllSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRR 1051
Cdd:TIGR00606  888 EQ-----LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1052 EAEE-LQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRasihraeqEKASLKRSK 1130
Cdd:TIGR00606  963 KIQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK--------RENELKEVE 1034

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977  1131 EEQEQKLLLLQEAQVAAQKEAYE-LRTRLQELERAQRDTRRKLQERHRQVRTLEAE 1185
Cdd:TIGR00606 1035 EELKQHLKEMGQMQVLQMKQEHQkLEENIDLIKRNHVLALGRQKGYEKEIKHFKKE 1090
mukB PRK04863
chromosome partition protein MukB;
452-816 5.28e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 51.50  E-value: 5.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  452 EEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAqrQEAQLSQASVHlLEREKEALETTMEELRAKADIREAET 531
Cdd:PRK04863  286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESD--LEQDYQAASDH-LNLVQTALRQQEKIERYQADLEELEE 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  532 QKLEVTNA-ELRRSLLLRAEQKAELAQQSERSLRE--------LEASQGRVEQLEEKVSGLRK----------ELATSRE 592
Cdd:PRK04863  363 RLEEQNEVvEEADEQQEENEARAEAAEEEVDELKSqladyqqaLDVQQTRAIQYQQAVQALERakqlcglpdlTADNAED 442

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  593 ALSSMQLQRDILETEKESLHGALAQAESGNADLEL---LVTRLkAEGMEQQDSLAKMAALLEGLSQDKgtlnHLALQLEQ 669
Cdd:PRK04863  443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQayqLVRKI-AGEVSRSEAWDVARELLRRLREQR----HLAEQLQQ 517

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  670 ERDQLREQQKMLQQEQAGMReQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQ 749
Cdd:PRK04863  518 LRMRLSELEQRLRQQQRAER-LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  750 ALEKQLAQSLQDQEAQ---MDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLEN 816
Cdd:PRK04863  597 RLAARAPAWLAAQDALarlREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 518-1101 6.16e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 51.38  E-value: 6.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   518 EELRAKADIREAETQKLEvtNAELRRSLLLRAEQKAELaqQSERSLRELEASQGRVE--------QLEEKVSGLRKELAT 589
Cdd:pfam12128  237 MKIRPEFTKLQQEFNTLE--SAELRLSHLHFGYKSDET--LIASRQEERQETSAELNqllrtlddQWKEKRDELNGELSA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   590 SREALSSMQLQRDILETEK--------ESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDkgtLN 661
Cdd:pfam12128  313 ADAAVAKDRSELEALEDQHgafldadiETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ---NN 389

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   662 HLALQLEQERDQLREQQKMLQQEQAGMREQL-----TQTGQQLGLIRAERRSLKETCGHLEQKQDhlekQVVLLGQENAQ 736
Cdd:pfam12128  390 RDIAGIKDKLAKIREARDRQLAVAEDDLQALeselrEQLEAGKLEFNEEEYRLKSRLGELKLRLN----QATATPELLLQ 465

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   737 LREQVGQVTNKKQALEKQLA--QSLQDQEAQMDILQEALHEKntLSEERAQLLAKQEALERHSELVTKEA----ADLRAE 810
Cdd:pfam12128  466 LENFDERIERAREEQEAANAevERLQSELRQARKRRDQASEA--LRQASRRLEERQSALDELELQLFPQAgtllHFLRKE 543

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   811 RNSLENSLFE-AQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLAL 889
Cdd:pfam12128  544 APDWEQSIGKvISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA 623

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   890 ERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALS 969
Cdd:pfam12128  624 EEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLE 703

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   970 LKDAEKSLLSKELSGAHRELERARQEAQNQQVQA-EATVTTMTKELRTLQVQF----------EEAISTHQREADTLREK 1038
Cdd:pfam12128  704 EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiAARRSGAKAELKALETWYkrdlaslgvdPDVIAKLKREIRTLERK 783

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977  1039 LREIAAERSSVRR-----------EAEELQAQLNVAHERLAELRQELQASEESREgLQREAL----GARRALEDEVQE 1101
Cdd:pfam12128  784 IERIAVRRQEVLRyfdwyqetwlqRRPRLATQLSNIERAISELQQQLARLIADTK-LRRAKLemerKASEKQQVRLSE 860
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1088-1296 6.62e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 50.53  E-value: 6.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1088 ALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRD 1167
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1168 TRRKLQERHRQVRTLEAENQRKRQEVSD---LQAQVSRDAQHRQKNLQESLELQRQVAEAQAAH----DGVQKEVLGLRQ 1240
Cdd:COG4942    95 LRAELEAQKEELAELLRALYRLGRQPPLallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADlaelAALRAELEAERA 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977 1241 KLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLD 1296
Cdd:COG4942   175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1481-1683 7.05e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 51.07  E-value: 7.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1481 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLleQPLQQVLPHsRRDRAERRALREQTTSLRTERARLQ 1560
Cdd:COG4913   232 EHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAEL--EYLRAALRL-WFAQRRLELLEAELEELRAELARLE 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1561 GELAALRTRLIQTEQETLKKEEDRAML-GAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQ---AHTQRLQELAAQ 1636
Cdd:COG4913   309 AELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpASAEEFAALRAE 388

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 568909977 1637 HQRDLAAEAQRLHEAQLQATQALEScEQIHQQRVKVLERQVASLKKR 1683
Cdd:COG4913   389 AAALLEALEEELEALEEALAEAEAA-LRDLRRELRELEAEIASLERR 434
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1401-1636 1.24e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 1.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1401 LVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLET 1480
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1481 EHLASARAAGQERRRLQEQVDTLrQALEESSRP-----SQSLADKGRLLeQPLQQVLPHsrrDRAERRALREQTTSLRTE 1555
Cdd:COG4942    91 EIAELRAELEAQKEELAELLRAL-YRLGRQPPLalllsPEDFLDAVRRL-QYLKYLAPA---RREQAEELRADLAELAAL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1556 RARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAA 1635
Cdd:COG4942   166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245


                  .
gi 568909977 1636 Q 1636
Cdd:COG4942   246 A 246
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1406-1693 1.32e-05

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 50.34  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1406 LEAQQErdnsgiQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEG----QRRAesaLQSAQAARALQK-EALQRLET 1480
Cdd:COG3096   363 LEEQEE------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAldvqQTRA---IQYQQAVQALEKaRALCGLPD 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1481 EHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAERRAlREQTTSLRTERARLQ 1560
Cdd:COG3096   434 LTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTA-RELLRRYRSQQALAQ 512

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1561 gELAALRTRLIQTEQETLKKEEDRAMLGA-------------KKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHT 1627
Cdd:COG3096   513 -RLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldaaeELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLR 591

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977 1628 QRLQELAAQHQRDLAAeAQRLHEAQLQATQALESCEQIHQQRVKVLER---------QVASLKKRLDKEVWQRQQ 1693
Cdd:COG3096   592 ARIKELAARAPAWLAA-QDALERLREQSGEALADSQEVTAAMQQLLERereatverdELAARKQALESQIERLSQ 665
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 544-784 1.62e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  544 SLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSsmQLQRDILETEKEslhgaLAQAESGNA 623
Cdd:COG4942    14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA--ALARRIRALEQE-----LAALEAELA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  624 DLELLVTRLKAEGMEQQDSLAKMAALLeglsQDKGTLNHLALQLEQER-DQLREQQKMLQQEQAGMREQLTQTGQQLGLI 702
Cdd:COG4942    87 ELEKEIAELRAELEAQKEELAELLRAL----YRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAEL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  703 RAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQsLQDQEAQMDILQEALHEKNTLSEE 782
Cdd:COG4942   163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE-LQQEAEELEALIARLEAEAAAAAE 241


                  ..
gi 568909977  783 RA 784
Cdd:COG4942   242 RT 243
PTZ00121 PTZ00121
MAEBL; Provisional
 974-1693 1.65e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  974 EKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTK--ELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRR 1051
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDAR 1164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1052 EAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKaslkrsKE 1131
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK------KD 1238

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1132 EQEQKllllqeaqvAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRtlEAENQRKRQEVSdlQAQVSRDAQHRQK-- 1209
Cdd:PTZ00121 1239 AEEAK---------KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR--KADELKKAEEKK--KADEAKKAEEKKKad 1305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1210 NLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAElcriTRKLQEASNQAD 1289
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA----EKKKEEAKKKAD 1381

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1290 SLQRSldnacsrvhvlEQELAKAEGARCNAEAQLGRlwstlcsgLGQSRNLLASPKRPHSPTTGSSQTRPGRQrtspptr 1369
Cdd:PTZ00121 1382 AAKKK-----------AEEKKKADEAKKKAEEDKKK--------ADELKKAAAAKKKADEAKKKAEEKKKADE------- 1435

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1370 sysparwpspvpVDPKSEVIDVAfvrdalrdlvqgllEAQQERDNSGIQVANLSSQLSEAeRERLRLQSRVEQLQRdlad 1449
Cdd:PTZ00121 1436 ------------AKKKAEEAKKA--------------DEAKKKAEEAKKAEEAKKKAEEA-KKADEAKKKAEEAKK---- 1484

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1450 AEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAgQERRRLQE--QVDTLRQALEESSRPSQSLADKGRLLEQp 1527
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-DEAKKAEEakKADEAKKAEEKKKADELKKAEELKKAEE- 1562

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1528 LQQVLPHSRRDRAERRALREQTTSLRTERARLQgELAALRTRLIQTEQETLKKEED---RAMLGAKKELLLQSLSHLHQE 1604
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKK 1641

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1605 VDGALRQSQQLQAQmaelEQAHTQRLQELA--AQHQRDLAAEAQRLHEAQLQATQALESCEQihqqrvkvLERQVASLKK 1682
Cdd:PTZ00121 1642 EAEEKKKAEELKKA----EEENKIKAAEEAkkAEEDKKKAEEAKKAEEDEKKAAEALKKEAE--------EAKKAEELKK 1709

                         730
                  ....*....|.
gi 568909977 1683 RLDKEVWQRQQ 1693
Cdd:PTZ00121 1710 KEAEEKKKAEE 1720
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 910-1151 3.20e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.22  E-value: 3.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  910 LSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEhEMQQALSLKDAEKSLLSKELSGAHREL 989
Cdd:COG4942     7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAEL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  990 ERARQEAQNQQVQAEATVTTMTKELRTLQV---QFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLnvahER 1066
Cdd:COG4942    86 AELEKEIAELRAELEAQKEELAELLRALYRlgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL----AE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1067 LAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQhsnTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVA 1146
Cdd:COG4942   162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238


                  ....*
gi 568909977 1147 AQKEA 1151
Cdd:COG4942   239 AAERT 243
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
438-815 4.44e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 48.52  E-value: 4.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  438 QREQELRLRLESSQEEAAGLREQLS-------------GYRQELRTSQRLLQDRAQEHEDLLGQL-EAQRQEAQLSQASV 503
Cdd:PRK03918  307 DELREIEKRLSRLEEEINGIEERIKeleekeerleelkKKLKELEKRLEELEERHELYEEAKAKKeELERLKKRLTGLTP 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  504 HLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSL---------------LLRAEQKAELAqqsERSLRELEA 568
Cdd:PRK03918  387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgrELTEEHRKELL---EEYTAELKR 463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  569 SQGRVEQLEEKVSGLRKE-------LATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQd 641
Cdd:PRK03918  464 IEKELKEIEEKERKLRKElrelekvLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK- 542

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  642 SLAKMAALLEGLSQDKGTLNHLALQLEQERDQLreqQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQD 721
Cdd:PRK03918  543 SLKKELEKLEELKKKLAELEKKLDELEEELAEL---LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEK 619

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  722 HLEKqvvlLGQENAQLREQVGQVTNKKQALEKQLAQSLQdqEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVT 801
Cdd:PRK03918  620 ELKK----LEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693

                         410
                  ....*....|....
gi 568909977  802 KEAADLRAERNSLE 815
Cdd:PRK03918  694 KTLEKLKEELEERE 707
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
653-1192 7.43e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 7.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  653 LSQDKGTLNHLALQLEQERDQ-LREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKqvvlLG 731
Cdd:PRK02224  182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET----LE 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  732 QENAQLREQVGQVTNKKQALekqlAQSLQDQEAQMDILQEalhEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAER 811
Cdd:PRK02224  258 AEIEDLRETIAETEREREEL----AEEVRDLRERLEELEE---ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  812 NSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALER 891
Cdd:PRK02224  331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  892 QELAH--TEDLARLHREKDTLSLSLAEEKEA---AARWMEQQK--------------ELLTRSAADREALQGEIQNLKQE 952
Cdd:PRK02224  411 EDFLEelREERDELREREAELEATLRTARERveeAEALLEAGKcpecgqpvegsphvETIEEDRERVEELEAELEDLEEE 490

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  953 RDEsllqLEHEMQQALSLKDAEKSL--LSKELSGAHRELERARQEAQNQQVQAEaTVTTMTKELRTLQVQFEEAISTHQR 1030
Cdd:PRK02224  491 VEE----VEERLERAEDLVEAEDRIerLEERREDLEELIAERRETIEEKRERAE-ELRERAAELEAEAEEKREAAAEAEE 565

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1031 EADTLREKLREIAAERSSVRREAEELqAQLNVAHERLAELRQELQASEESREGLQ------REALGARR----ALEDEVQ 1100
Cdd:PRK02224  566 EAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAelnderRERLAEKRerkrELEAEFD 644

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1101 EKDVlqhsnTELRASIHRAE--QEKASLK-RSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELEraqrDTRRKLQERHR 1177
Cdd:PRK02224  645 EARI-----EEAREDKERAEeyLEQVEEKlDELREERDDLQAEIGAVENELEELEELRERREALE----NRVEALEALYD 715

                         570
                  ....*....|....*
gi 568909977 1178 QVRTLEAENQRKRQE 1192
Cdd:PRK02224  716 EAEELESMYGDLRAE 730
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
737-1252 7.75e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 47.73  E-value: 7.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  737 LREQVGQVTNKKQALEKQLAQSLQDQEAQMDIL---QEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNS 813
Cdd:PRK02224  211 LESELAELDEEIERYEEQREQARETRDEADEVLeehEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  814 LENSLFEAqrlttqlQTQQEQLEGKAEAAQLARRALQVEIErlksdwEVRETKLQLHLGQLqqqaaqqeqeaqlalerqe 893
Cdd:PRK02224  291 LEEERDDL-------LAEAGLDDADAEAVEARREELEDRDE------ELRDRLEECRVAAQ------------------- 338

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  894 lAHTEDLARLHREKDTLSLSLAEEKEAAARW---MEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEhEMQQALSL 970
Cdd:PRK02224  339 -AHNEEAESLREDADDLEERAEELREEAAELeseLEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG-NAEDFLEE 416

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  971 KDAEKSLLSKELSGAHRELERARQE-AQNQQVQAEATVTTMTKELRTlqvqfeeaiSTHQREADTLREKLREIAAERSSV 1049
Cdd:PRK02224  417 LREERDELREREAELEATLRTARERvEEAEALLEAGKCPECGQPVEG---------SPHVETIEEDRERVEELEAELEDL 487

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1050 RREAEELQAQLNVAhERLAELRQELQASEESREGL------QREALGARR-----------ALEDEVQEKdvlQHSNTEL 1112
Cdd:PRK02224  488 EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLeeliaeRRETIEEKReraeelreraaELEAEAEEK---REAAAEA 563

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1113 RASIHRAEQEKASLKRSKEEQEQ------KLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAEN 1186
Cdd:PRK02224  564 EEEAEEAREEVAELNSKLAELKEriesleRIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF 643

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977 1187 QRKRQEvsdlqaqvsrDAQHRQKNLQESLE-LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR 1252
Cdd:PRK02224  644 DEARIE----------EAREDKERAEEYLEqVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
PRK11281 PRK11281
mechanosensitive channel MscK;
936-1223 9.50e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 47.60  E-value: 9.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  936 AADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDaekslLSKELSGAHRELERARQEAQN-QQVQAEATVTTMTK-E 1013
Cdd:PRK11281   48 LNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-----LKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLSTlS 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1014 LRTLQVQFEEAISTHQreadTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLqrealgarr 1093
Cdd:PRK11281  123 LRQLESRLAQTLDQLQ----NAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKAL--------- 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1094 aledevqekdvlqhsntelrasihRAEQekaslkRSKEEQEQKLLllqEAQVAAQKEAYELRTRLQELERAQRD-TRRKL 1172
Cdd:PRK11281  190 ------------------------RPSQ------RVLLQAEQALL---NAQNDLQRKSLEGNTQLQDLLQKQRDyLTARI 236

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977 1173 QERHRQVRTLEAENQRKRQEVSD---LQAQVSRDAQHRQKN--LQESLELQRQVAE 1223
Cdd:PRK11281  237 QRLEHQLQLLQEAINSKRLTLSEktvQEAQSQDEAARIQANplVAQELEINLQLSQ 292
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
668-1204 9.50e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.37  E-value: 9.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  668 EQERDQLREQQKMLQQ---EQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQkqdhLEKQVVLLGQENAQLREQVGQV 744
Cdd:PRK03918  189 ENIEELIKEKEKELEEvlrEINEISSELPELREELEKLEKEVKELEELKEEIEE----LEKELESLEGSKRKLEEKIREL 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  745 TNKKQALEKQLaQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRA---ERNSLENSLFEA 821
Cdd:PRK03918  265 EERIEELKKEI-EELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEEL 343

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  822 QRLTTQLQTQQEQLEGKAEAAQLARrALQVEIERLKsdwevreTKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLA 901
Cdd:PRK03918  344 KKKLKELEKRLEELEERHELYEEAK-AKKEELERLK-------KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  902 RLHREKDTLSLSLAEEKEAAARW--------MEQQKELLTRSAADREALQGEIQNL-KQERD--------ESLLQLEHEM 964
Cdd:PRK03918  416 ELKKEIKELKKAIEELKKAKGKCpvcgreltEEHRKELLEEYTAELKRIEKELKEIeEKERKlrkelrelEKVLKKESEL 495

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  965 QQALSLKDAEKSLLSKELSGAHRELERARQEAQNqqvqAEATVTTMTKELRTLQVQFEEaISTHQREADTLREKLREIAA 1044
Cdd:PRK03918  496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK----LKEKLIKLKGEIKSLKKELEK-LEELKKKLAELEKKLDELEE 570

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1045 ERSSVRREAEELQ-AQLNVAHERLAELRQ------ELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIH 1117
Cdd:PRK03918  571 ELAELLKELEELGfESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1118 raEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER------AQRDTRRKLQERHRQVRTLEAENQRKRQ 1191
Cdd:PRK03918  651 --ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKtleklkEELEEREKAKKELEKLEKALERVEELRE 728

                         570
                  ....*....|...
gi 568909977 1192 EVSDLQAQVSRDA 1204
Cdd:PRK03918  729 KVKKYKALLKERA 741
PRK11281 PRK11281
mechanosensitive channel MscK;
1417-1678 9.66e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 47.21  E-value: 9.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1417 IQVANLSSQLSEAErerlrLQSRVEQLQrDLADAEEGQRRAESALQsaQAARALQKEALQRLETEHL-ASARAAGQERRR 1495
Cdd:PRK11281   27 ARAASNGDLPTEAD-----VQAQLDALN-KQKLLEAEDKLVQQDLE--QTLALLDKIDRQKEETEQLkQQLAQAPAKLRQ 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1496 LQEQVDTLRQALEESSR---PSQSLADkgrlLEQPLQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQ 1572
Cdd:PRK11281   99 AQAELEALKDDNDEETRetlSTLSLRQ----LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1573 TeqetlkkeedRAMLGAKKELLLqslshlhqevdgALRQSQQ--LQAQMAELEQAHTQRLQELAA--------QHQRDLA 1642
Cdd:PRK11281  175 I----------RNLLKGGKVGGK------------ALRPSQRvlLQAEQALLNAQNDLQRKSLEGntqlqdllQKQRDYL 232

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 568909977 1643 AEAQRLHEAQLQATQALesceqIHQQRVKVLERQVA 1678
Cdd:PRK11281  233 TARIQRLEHQLQLLQEA-----INSKRLTLSEKTVQ 263
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
1013-1220 9.82e-05

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 46.82  E-value: 9.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1013 ELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR 1092
Cdd:COG4372    14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1093 RALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKL 1172
Cdd:COG4372    94 AELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL 173

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 568909977 1173 QERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQ 1220
Cdd:COG4372   174 QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELL 221
PLN02939 PLN02939
transferase, transferring glycosyl groups
 396-785 1.06e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 47.20  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  396 ARLRSPPRSVSPHQRMSPARTSSPtslHPALQAVQaaieRRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLL 475
Cdd:PLN02939   15 GPIRSRAPFYLPSRRRLAVSCRAR---RRGFSSQQ----KKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELP 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  476 QDrAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAEtqklevtnaelrRSLLLRAEQKAEL 555
Cdd:PLN02939   88 QK-STSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAE------------KNILLLNQARLQA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  556 AQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAE 635
Cdd:PLN02939  155 LEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  636 GMEQQDSlakMAALLEGLSQDKGTLNHLALqLEQERDQLREQQKMLQQEQAGMREQLTqtgqQLGLIRAERRSLK-ETCG 714
Cdd:PLN02939  235 NMLLKDD---IQFLKAELIEVAETEERVFK-LEKERSLLDASLRELESKFIVAQEDVS----KLSPLQYDCWWEKvENLQ 306

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568909977  715 H-LEQKQDHLEKQVVLLGQeNAQLREQVGQvtnkkqaLEKQLAQSLQDQEA--QMDILQealhEKNTLSEERAQ 785
Cdd:PLN02939  307 DlLDRATNQVEKAALVLDQ-NQDLRDKVDK-------LEASLKEANVSKFSsyKVELLQ----QKLKLLEERLQ 368
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1036-1584 1.13e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 46.96  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1036 REKLREIAAERSsvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALED---EVQEKDVLQHSNTEL 1112
Cdd:PRK02224  186 RGSLDQLKAQIE--EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEheeRREELETLEAEIEDL 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1113 RASIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAyelrtrlqELERAQRDTRRKLQErhrqvrTLEAENQRKRQE 1192
Cdd:PRK02224  264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA--------GLDDADAEAVEARRE------ELEDRDEELRDR 329

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1193 VSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcesqraeqTLQA 1272
Cdd:PRK02224  330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE-----------ELRE 398

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1273 ELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGrlwSTLCSGLGQSRNllaspKRPHSPTT 1352
Cdd:PRK02224  399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE---AGKCPECGQPVE-----GSPHVETI 470

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1353 GSSQTRPGRQRTSPptrsysparwpspvpVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERE 1432
Cdd:PRK02224  471 EEDRERVEELEAEL---------------EDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK 535

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1433 RLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAAR----------ALQKEALQRLET--EHLASARAAGQERRRLQEQV 1500
Cdd:PRK02224  536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAReevaelnsklAELKERIESLERirTLLAAIADAEDEIERLREKR 615

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1501 DTLRQALEESSRPSQSLADKGRLLEQPLQQVL---PHSRRDRAER--RALREQTTSLRTERARLQGELAALRTRLiqTEQ 1575
Cdd:PRK02224  616 EALAELNDERRERLAEKRERKRELEAEFDEARieeAREDKERAEEylEQVEEKLDELREERDDLQAEIGAVENEL--EEL 693


                  ....*....
gi 568909977 1576 ETLKKEEDR 1584
Cdd:PRK02224  694 EELRERREA 702
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 947-1293 1.26e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 47.25  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  947 QNLKQERDESLLQLEHEMQQALSLKDAEKSLLSkELSGAHRELErARQEAQNQQVQAEAtvttmtKELRTLQ--VQFEEA 1024
Cdd:COG3096   277 ANERRELSERALELRRELFGARRQLAEEQYRLV-EMARELEELS-ARESDLEQDYQAAS------DHLNLVQtaLRQQEK 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1025 ISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALG---ARRALED--EV 1099
Cdd:COG3096   349 IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQyqqAVQALEKarAL 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1100 QEKDVLQHSNTELRASIHRAEQEkaSLKRSKEEQEQKLLLLQEAqVAAQKEAYELRT----------------------- 1156
Cdd:COG3096   429 CGLPDLTPENAEDYLAAFRAKEQ--QATEEVLELEQKLSVADAA-RRQFEKAYELVCkiageversqawqtarellrryr 505

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1157 -------RLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDlqAQVSRDAQHRQKNLQEslELQRQVAEAQAAHD 1229
Cdd:COG3096   506 sqqalaqRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA--AEELEELLAELEAQLE--ELEEQAAEAVEQRS 581

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1230 GVQKEVLGLRQKLAEVEASG------ETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQR 1293
Cdd:COG3096   582 ELRQQLEQLRARIKELAARApawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
mukB PRK04863
chromosome partition protein MukB;
421-760 1.45e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.87  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  421 SLHPALQAVQAA------IERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQ 494
Cdd:PRK04863  332 AASDHLNLVQTAlrqqekIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  495 EAQLSQASVHLLEREK----------EALETTMEELRAKAD-----IREAEtQKLEVTNAELRR-----SLLLRA----- 549
Cdd:PRK04863  412 RAIQYQQAVQALERAKqlcglpdltaDNAEDWLEEFQAKEQeateeLLSLE-QKLSVAQAAHSQfeqayQLVRKIagevs 490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  550 -EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAlssMQLQRDiletekesLHGALAQAESGNADLELL 628
Cdd:PRK04863  491 rSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA---ERLLAE--------FCKRLGKNLDDEDELEQL 559

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  629 VTRLKAEgmeqqdslakmaalLEGLSQDKGTLNHLALQLEQERDQLREQ-QKMLQQEQAGMREQ--LTQTGQQLGLIRAE 705
Cdd:PRK04863  560 QEELEAR--------------LESLSESVSEARERRMALRQQLEQLQARiQRLAARAPAWLAAQdaLARLREQSGEEFED 625

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568909977  706 RRSLketcghLEQKQDHLEKQVvllgqenaQLREQVGQVTNKKQALEKQLAQSLQ 760
Cdd:PRK04863  626 SQDV------TEYMQQLLERER--------ELTVERDELAARKQALDEEIERLSQ 666
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1046-1251 1.49e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 46.55  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1046 RSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQRE--ALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEK 1123
Cdd:COG3206   163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1124 ASLKRSKEEQEQKLLLLQEAQVAAQkeayeLRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRD 1203
Cdd:COG3206   243 AALRAQLGSGPDALPELLQSPVIQQ-----LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 568909977 1204 AQHRQKNLQESL-ELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGET 1251
Cdd:COG3206   318 LEAELEALQAREaSLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 913-1125 1.53e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  913 SLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLeHEMQQALSLKDAEKSLLSKELSGAHRELERA 992
Cdd:COG4942    24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI-RALEQELAALEAELAELEKEIAELRAELEAQ 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  993 RQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIST----------HQREADTLREKLREIAAERSSVRREAEELQAQLNV 1062
Cdd:COG4942   103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqylkylapaRREQAEELRADLAELAALRAELEAERAELEALLAE 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977 1063 AHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKAS 1125
Cdd:COG4942   183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 897-1676 1.84e-04

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 46.50  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   897 TEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKS 976
Cdd:pfam02463  182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   977 LLSKELSGAHRELERARQEAQNQQVQAeATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEEL 1056
Cdd:pfam02463  262 KEEEKLAQVLKENKEEEKEKKLQEEEL-KLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEEL 340

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1057 QAQLnvahERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVlqhsntELRASIHRAEQEKASLKRSKEEQEQK 1136
Cdd:pfam02463  341 EKEL----KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE------RLSSAAKLKEEELELKSEEEKEAQLL 410

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1137 LLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLqaqvsrdaqhrQKNLQESLE 1216
Cdd:pfam02463  411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS-----------EDLLKETQL 479

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1217 LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGhlcesqraeqtlqAELCRITRKLQEASNQADSLQRSLD 1296
Cdd:pfam02463  480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG-------------GRIISAHGRLGDLGVAVENYKVAIS 546

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1297 NACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLCSGLGQSRNLLASPKRPHSPTTgssqtrpgRQRTSPPTRSYSPARW 1376
Cdd:pfam02463  547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI--------LNLAQLDKATLEADED 618

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1377 PSPVPVDPKSEVIDVAFVRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRR 1456
Cdd:pfam02463  619 DKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ 698

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1457 AESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLphSR 1536
Cdd:pfam02463  699 LEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK--EL 776

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1537 RDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQ 1616
Cdd:pfam02463  777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL 856

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1617 AQMAELEQAHTQRLQELAAQHQRDLAAEAQRLHEAQLQATQALESCEQIHQQRVKVLERQ 1676
Cdd:pfam02463  857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKE 916
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 1056-1290 2.00e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1056 LQAQLNVAHERLAELRQELQAseesregLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQ 1135
Cdd:COG4942    11 LALAAAAQADAAAEAEAELEQ-------LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1136 KLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRK-----------LQERHRQVRTLEAENQRKRQEVSDLQAQVSRDA 1204
Cdd:COG4942    84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1205 QHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEghlcESQRAEQTLQAELCRITRKLQEA 1284
Cdd:COG4942   164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAA 239


                  ....*.
gi 568909977 1285 SNQADS 1290
Cdd:COG4942   240 AERTPA 245
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 379-596 2.38e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  379 MCPELAWSSSIEVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLR 458
Cdd:COG4942    10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  459 EQLSGYRQELRTSQRLLQDR------------------AQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEEL 520
Cdd:COG4942    90 KEIAELRAELEAQKEELAELlralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977  521 RAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSS 596
Cdd:COG4942   170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
440-620 2.43e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  440 EQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQasvhlLEREKEALETTMEE 519
Cdd:COG3206   163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE-----LESQLAEARAELAE 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  520 LRAKADIREAETQKLEVTNAELRRSLLLRA--EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELAT-SREALSS 596
Cdd:COG3206   238 AEARLAALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQeAQRILAS 317

                         170       180
                  ....*....|....*....|....
gi 568909977  597 MQLQRDILETEKESLHGALAQAES 620
Cdd:COG3206   318 LEAELEALQAREASLQAQLAQLEA 341
mukB PRK04863
chromosome partition protein MukB;
422-696 2.97e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 45.72  E-value: 2.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  422 LHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQ-RLLQ--------DRAQE----------- 481
Cdd:PRK04863  360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQtRAIQyqqavqalERAKQlcglpdltadn 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  482 HEDLLGQLEAQRQEA---------QLSQASVHllereKEALETTMEELR--------------AKADIREAETQKLEVTN 538
Cdd:PRK04863  440 AEDWLEEFQAKEQEAteellsleqKLSVAQAA-----HSQFEQAYQLVRkiagevsrseawdvARELLRRLREQRHLAEQ 514

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  539 AELRRSLLLRAEQKAELAQQSERSLRELEASQGRV-----------EQLEEKVSGLRKELATSREALSSMQLQRDILETE 607
Cdd:PRK04863  515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNlddedeleqlqEELEARLESLSESVSEARERRMALRQQLEQLQAR 594

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  608 KESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSqdkgtlnhlalQLEQERDQLREQQKMLQQEqag 687
Cdd:PRK04863  595 IQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-----------ELTVERDELAARKQALDEE--- 660


                  ....*....
gi 568909977  688 mREQLTQTG 696
Cdd:PRK04863  661 -IERLSQPG 668
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
430-611 3.03e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  430 QAAIERRQQREQ-----ELRLRLESSQEEAAGLREQLSGYR-QELRTSQRLLQDRAQEHEDLLGQLEAQRQEaqlsqasv 503
Cdd:COG4913   242 EALEDAREQIELlepirELAERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELER-------- 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  504 hlLEREKEALETtmEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQ-------------SERSLREL-EAS 569
Cdd:COG4913   314 --LEARLDALRE--ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalglplpaSAEEFAALrAEA 389

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 568909977  570 QGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESL 611
Cdd:COG4913   390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
1050-1227 3.03e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 45.53  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1050 RREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHsNTELRASIHRAEQEKASLKRS 1129
Cdd:COG4717    80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEAL-EAELAELPERLEELEERLEEL 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1130 KEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR-DAQHRQ 1208
Cdd:COG4717   159 RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQlENELEA 238

                         170
                  ....*....|....*....
gi 568909977 1209 KNLQESLELQRQVAEAQAA 1227
Cdd:COG4717   239 AALEERLKEARLLLLIAAA 257
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
488-684 3.41e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 3.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  488 QLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKadiREAETQKLEVTNAELRRslllrAEQKAELAQQSERsLRELE 567
Cdd:COG4913   611 KLAALEAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEIDV-----ASAEREIAELEAE-LERLD 681

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  568 ASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADlellvtrlkAEGMEQQDSLAKMA 647
Cdd:COG4913   682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA---------AEDLARLELRALLE 752

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 568909977  648 ALLEGLSQDKgTLNHLALQLEQERDQLREQQKMLQQE 684
Cdd:COG4913   753 ERFAAALGDA-VERELRENLEERIDALRARLNRAEEE 788
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 927-1202 3.54e-04

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 45.33  E-value: 3.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  927 QQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEmqqaLSLKDAEKSLLSKELSGAHRELERARQEA-QNQQVQAEA 1005
Cdd:COG5185   272 ENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIK----KATESLEEQLAAAEAEQELEESKRETETGiQNLTAEIEQ 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1006 TVTTMTKELRTLQVQFEEAISThqREADTLREKLREIAAERSSVRREAEEL-QAQLNVAHERLAELRQELQASEESREGL 1084
Cdd:COG5185   348 GQESLTENLEAIKEEIENIVGE--VELSKSSEELDSFKDTIESTKESLDEIpQNQRGYAQEILATLEDTLKAADRQIEEL 425

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1085 QrealgarRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKllllqeaqvaaqKEAYELRTRLQELERA 1164
Cdd:COG5185   426 Q-------RQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYD------------EINRSVRSKKEDLNEE 486

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 568909977 1165 QRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSR 1202
Cdd:COG5185   487 LTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAE 524
PRK09039 PRK09039
peptidoglycan -binding protein;
472-594 3.98e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.57  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  472 QRLLQDRAQEHEDLLGQLeaQRQEAQLSQAsVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQ 551
Cdd:PRK09039   41 QFFLSREISGKDSALDRL--NSQIAELADL-LSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGR 117

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 568909977  552 KAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREAL 594
Cdd:PRK09039  118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
939-1136 4.68e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 44.13  E-value: 4.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  939 REALQGEIQNLKQERDESLLQLEHEMQQALSLKD--AEKSLLSKELSGAHRELERARQEAQNQQVQAE------ATVTTM 1010
Cdd:COG1340    66 RDELNEKVKELKEERDELNEKLNELREELDELRKelAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEeekelvEKIKEL 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1011 TKELRTLQVQFEEaisthQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALG 1090
Cdd:COG1340   146 EKELEKAKKALEK-----NEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVE 220

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 568909977 1091 ARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQK 1136
Cdd:COG1340   221 AQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELE 266
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 1038-1193 4.73e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 43.76  E-value: 4.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1038 KLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREaLGARRALEDEVQEKDVLQHSNTELRAsih 1117
Cdd:COG1579    18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELE-IEEVEARIKKYEEQLGNVRNNKEYEA--- 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568909977 1118 rAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEV 1193
Cdd:COG1579    94 -LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1397-1695 5.27e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 44.94  E-value: 5.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1397 ALRDLVQGLLEAQQ------------ERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSA 1464
Cdd:COG3096   253 SDRDLFKHLITEATnyvaadymrhanERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1465 qaaralqkealqrleTEHLASARAAgqerRRLQEQVDTLRQALEESSRpsqsladkgRLLEQPLQQVLPHSRRDRAERRA 1544
Cdd:COG3096   333 ---------------SDHLNLVQTA----LRQQEKIERYQEDLEELTE---------RLEEQEEVVEEAAEQLAEAEARL 384

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1545 LR--EQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAkkelllqslshLHQEVDGALRQSQQLQAQmael 1622
Cdd:COG3096   385 EAaeEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGL-----------PDLTPENAEDYLAAFRAK---- 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1623 EQAHTQRLqeLAAQHQRDLAAEAQRLHEAQLQATQAL------------------ESCEQIHQ-QRVKVLERQVASLKKR 1683
Cdd:COG3096   450 EQQATEEV--LELEQKLSVADAARRQFEKAYELVCKIageversqawqtarellrRYRSQQALaQRLQQLRAQLAELEQR 527

                         330
                  ....*....|..
gi 568909977 1684 LdkevwQRQQQA 1695
Cdd:COG3096   528 L-----RQQQNA 534
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
736-1280 5.80e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.91  E-value: 5.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  736 QLREQVGQVTNKKQALEKQLAQ--SLQDQEAQMDILQEALHEKNTLSEERAQLlaKQEALERHSELVTKEAADLRAERNS 813
Cdd:COG4913   229 ALVEHFDDLERAHEALEDAREQieLLEPIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELAR 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  814 LENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRA-LQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEqeaqlalerq 892
Cdd:COG4913   307 LEAELERLEARLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERERRRARLEALLAALGLPLP---------- 376

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  893 elAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQER---DESLLQLEHEMQQALS 969
Cdd:COG4913   377 --ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniPARLLALRDALAEALG 454

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  970 LKDAEKSLLSK--ELSGAHRELERARQ-------------EAQNQQVQAEATVTTMTKELRTLQVQ-FEEAISTHQREAD 1033
Cdd:COG4913   455 LDEAELPFVGEliEVRPEEERWRGAIErvlggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRtGLPDPERPRLDPD 534

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1034 TLREKLreiAAERSSVRREAEELQAQLNVAH--ERLAELRQELQASeeSREGlQREALGARRALEDE--VQEKDVLQHSN 1109
Cdd:COG4913   535 SLAGKL---DFKPHPFRAWLEAELGRRFDYVcvDSPEELRRHPRAI--TRAG-QVKGNGTRHEKDDRrrIRSRYVLGFDN 608

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1110 T-----------ELRASIHRAEQEKASLKRSKEEQEQKLLLLQEAQV---------AAQKEAYELRTRLQELERAQRDtr 1169
Cdd:COG4913   609 RaklaaleaelaELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvaSAEREIAELEAELERLDASSDD-- 686

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1170 rkLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASG 1249
Cdd:COG4913   687 --LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVE 764

                         570       580       590
                  ....*....|....*....|....*....|.
gi 568909977 1250 ETRAKQLEGHLCESQRAEQTLQAELCRITRK 1280
Cdd:COG4913   765 RELRENLEERIDALRARLNRAEEELERAMRA 795
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 550-1212 8.34e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 44.19  E-value: 8.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   550 EQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGAL--------AQAESG 621
Cdd:TIGR00618  191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLkkqqllkqLRARIE 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   622 NADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLeQERDQLREQQKMLQQEQAGMREQLTQTGQQLGL 701
Cdd:TIGR00618  271 ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL-QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   702 IRAERRSLKETCGHLEQKQDHLEKQVVLLgQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE 781
Cdd:TIGR00618  350 LHSQEIHIRDAHEVATSIREISCQQHTLT-QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   782 ERAQLLAKQEALERHSELVTKEAADLRAERNslenslfEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKsdwE 861
Cdd:TIGR00618  429 AKKQQELQQRYAELCAAAITCTAQCEKLEKI-------HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL---E 498

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   862 VRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKEL---LTRSAAD 938
Cdd:TIGR00618  499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsFSILTQC 578

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   939 REALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQ 1018
Cdd:TIGR00618  579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE 658

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1019 VQFEEAISTHQREADTLREKLREIAAERSsvrrEAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDE 1098
Cdd:TIGR00618  659 RVREHALSIRVLPKELLASRQLALQKMQS----EKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDL 734

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1099 VQEKDVLQHSNTELRasihraEQEKASLKRSKEEQEQKLlllQEAQVAAQkeayeLRTRLQELERAQRDTRRKLQERHRQ 1178
Cdd:TIGR00618  735 AAREDALNQSLKELM------HQARTVLKARTEAHFNNN---EEVTAALQ-----TGAELSHLAAEIQFFNRLREEDTHL 800

                          650       660       670
                   ....*....|....*....|....*....|....*
gi 568909977  1179 VRTLEAENQRKRQEVSD-LQAQVSRDAQHRQKNLQ 1212
Cdd:TIGR00618  801 LKTLEAEIGQEIPSDEDiLNLQCETLVQEEEQFLS 835
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 659-807 9.71e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 44.27  E-value: 9.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  659 TLNHLALQLEQERDQLREQQKMLQQEQAGMRE---QLTQTGQQLGLIR-----AERR--SLKETCGHLEQkqdhleKQVV 728
Cdd:PRK10929  103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREisdSLSQLPQQQTEARrqlneIERRlqTLGTPNTPLAQ------AQLT 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  729 LLGQENAQLREQVGQV------TNKKQALEKQLAQSLQDQEAQMDILQEALheKNTLSEERAQllAKQEALErHSELVTK 802
Cdd:PRK10929  177 ALQAESAALKALVDELelaqlsANNRQELARLRSELAKKRSQQLDAYLQAL--RNQLNSQRQR--EAERALE-STELLAE 251


                  ....*
gi 568909977  803 EAADL 807
Cdd:PRK10929  252 QSGDL 256
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
426-679 1.00e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 43.35  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  426 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL 505
Cdd:COG4372    68 LEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAE 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  506 LEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRK 585
Cdd:COG4372   148 REEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSL 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  586 ELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLAL 665
Cdd:COG4372   228 EAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAAL 307

                         250
                  ....*....|....
gi 568909977  666 QLEQERDQLREQQK 679
Cdd:COG4372   308 SLIGALEDALLAAL 321
PRK11281 PRK11281
mechanosensitive channel MscK;
421-591 1.01e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 44.13  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  421 SLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLR--------------EQLSGYRQELRTSQRLLQDRAQEHEDLL 486
Cdd:PRK11281  153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqrvllqaeqallNAQNDLQRKSLEGNTQLQDLLQKQRDYL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  487 gQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSL---LLRAEQKA-ELAQQSERS 562
Cdd:PRK11281  233 -TARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLsqrLLKATEKLnTLTQQNLRV 311

                         170       180
                  ....*....|....*....|....*....
gi 568909977  563 LRELEASQGRVEQLEEKVSGLRKELATSR 591
Cdd:PRK11281  312 KNWLDRLTQSERNIKEQISVLKGSLLLSR 340
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 1015-1321 1.03e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.96  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1015 RTLQVQFE--EAISTHQREADTLREKLREIAAERSSVRREAE-ELQAQLNVAHERLA--------ELRQELQASEESREG 1083
Cdd:pfam17380  287 RQQQEKFEkmEQERLRQEKEEKAREVERRRKLEEAEKARQAEmDRQAAIYAEQERMAmerereleRIRQEERKRELERIR 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1084 LQREALGARRALEDEVQEKDvLQHSNTELRASIHRAEQEKAsLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELER 1163
Cdd:pfam17380  367 QEEIAMEISRMRELERLQME-RQQKNERVRQELEAARKVKI-LEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1164 AQRDTRRKLQERHRQ-----VRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQ-VAEAQAAHDGVQKEVLG 1237
Cdd:pfam17380  445 AREMERVRLEEQERQqqverLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQaMIEEERKRKLLEKEMEE 524

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1238 LRQKLAEVEasgetrakqlEGHLCESQRAEQTLQAELCRITRKLQEASNqadslQRSLDNACSRVHVLEQELAKAEGARC 1317
Cdd:pfam17380  525 RQKAIYEEE----------RRREAEEERRKQQEMEERRRIQEQMRKATE-----ERSRLEAMEREREMMRQIVESEKARA 589


                   ....
gi 568909977  1318 NAEA 1321
Cdd:pfam17380  590 EYEA 593
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
425-595 1.04e-03

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 440263 [Multi-domain]  Cd Length: 555  Bit Score: 43.53  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  425 ALQAVQAAIERRQQREQELRLRLESSQE-----EAAGLR----EQLSGYRQELRTSQRLLQDRAQEHE----------DL 485
Cdd:COG0497   166 AWRALKKELEELRADEAERARELDLLRFqleelEAAALQpgeeEELEEERRRLSNAEKLREALQEALEalsggeggalDL 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  486 LGQL-----EAQRQEAQLSQASvHLLEREKEALETTMEELRAKADIREAETQKLEVTNAelRRSLLLRAEQK-------- 552
Cdd:COG0497   246 LGQAlraleRLAEYDPSLAELA-ERLESALIELEEAASELRRYLDSLEFDPERLEEVEE--RLALLRRLARKygvtveel 322

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 568909977  553 AELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALS 595
Cdd:COG0497   323 LAYAEELRAELAELENSDERLEELEAELAEAEAELLEAAEKLS 365
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
671-1123 1.11e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.60  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  671 RDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQA 750
Cdd:COG4717    48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  751 LEkqLAQSLQDQEAQMDILQEALHEkntLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLEnslFEAQRLTTQLQT 830
Cdd:COG4717   128 LP--LYQELEALEAELAELPERLEE---LEERLEELRELEEELEELEAELAELQEELEELLEQLS---LATEEELQDLAE 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  831 QQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTL 910
Cdd:COG4717   200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVL 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  911 SLSLA----------EEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEksllsK 980
Cdd:COG4717   280 FLVLGllallflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL-----R 354

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  981 ELSGAHRELERARQEAQNQQVQAEATVTT----------------MTKELRTLQVQFEEAISTHQREADTLREKlrEIAA 1044
Cdd:COG4717   355 EAEELEEELQLEELEQEIAALLAEAGVEDeeelraaleqaeeyqeLKEELEELEEQLEELLGELEELLEALDEE--ELEE 432

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1045 ERSSVRREAEELQAQLNVAHERLAELRQELQASEESRE--GLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQE 1122
Cdd:COG4717   433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512


                  .
gi 568909977 1123 K 1123
Cdd:COG4717   513 R 513
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
 468-698 1.12e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 43.35  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   468 LRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASvhlLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLL 547
Cdd:pfam07888   36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQ---WERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   548 RAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLEL 627
Cdd:pfam07888  113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSK 192

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568909977   628 LVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKML---QQEQAGMREQLTQTGQQ 698
Cdd:pfam07888  193 EFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLnasERKVEGLGEELSSMAAQ 266
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 426-1295 1.20e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 43.63  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   426 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHL 505
Cdd:pfam01576  245 LQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSK 324

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   506 LEREKEALETTMEElrakadireaETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQgrvEQLEEKVSGLRK 585
Cdd:pfam01576  325 REQEVTELKKALEE----------ETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQA 391

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   586 ELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEgmeqqdslakMAALLEGLSQDKGTLNHLAL 665
Cdd:pfam01576  392 ELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSE----------LESVSSLLNEAEGKNIKLSK 461

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   666 QLEQERDQLREQQKMLQQEQagmrEQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVT 745
Cdd:pfam01576  462 DVSSLESQLQDTQELLQEET----RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   746 NKKQALEKQLAQSLQDQEAQMDILQEALhekntlseeraqllAKQEALERHSELVTKEAADLRAERNSlenslfeaQRLT 825
Cdd:pfam01576  538 GTLEALEEGKKRLQRELEALTQQLEEKA--------------AAYDKLEKTKNRLQQELDDLLVDLDH--------QRQL 595

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   826 TQLQTQQEQLEGKAEAAQLARRALQVEiERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARlhr 905
Cdd:pfam01576  596 VSNLEKKQKKFDQMLAEEKAISARYAE-ERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVS--- 671

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   906 EKDTLSLSlAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGA 985
Cdd:pfam01576  672 SKDDVGKN-VHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQ 750

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   986 HRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAIsthqREADTLREKLREIAAERSSVRREAEELQAQLNVAHE 1065
Cdd:pfam01576  751 VRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAAN----KGREEAVKQLKKLQAQMKDLQRELEEARASRDEILA 826

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1066 RLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQH-------SNTELRASIHRAEQEKASLKRSKEEQEQKLL 1138
Cdd:pfam01576  827 QSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADeiasgasGKSALQDEKRRLEARIAQLEEELEEEQSNTE 906

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1139 LLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQ 1218
Cdd:pfam01576  907 LLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQE 986

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1219 RQvaEAQAAHDGVQKEVLGLRQKLAEVE-------------ASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEAS 1285
Cdd:pfam01576  987 SR--ERQAANKLVRRTEKKLKEVLLQVEderrhadqykdqaEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDAT 1064

                          890
                   ....*....|
gi 568909977  1286 NQADSLQRSL 1295
Cdd:pfam01576 1065 ESNESMNREV 1074
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 422-619 1.21e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   422 LHPALQAVQAAIERR-----------QQREQEL-RLRLESSQEEAAGLR-EQLSGYRQELRTSQRLLQDRAQEHEDLLGQ 488
Cdd:pfam17380  318 LEEAEKARQAEMDRQaaiyaeqermaMERERELeRIRQEERKRELERIRqEEIAMEISRMRELERLQMERQQKNERVRQE 397

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   489 LEAQRQEAQLSQasvhllEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERsLRELEA 568
Cdd:pfam17380  398 LEAARKVKILEE------ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVER-LRQQEE 470

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977   569 SQGR------------VEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAE 619
Cdd:pfam17380  471 ERKRkklelekekrdrKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE 533
PRK12704 PRK12704
phosphodiesterase; Provisional
 970-1154 1.29e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.23  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  970 LKDAEKSL--LSKElsgahRELErARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERS 1047
Cdd:PRK12704   44 LEEAKKEAeaIKKE-----ALLE-AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1048 SVRREAEELQAQLNVAHERLAELRQELqaseESREGLQREAlgARRALEDEVQEKdvlqhsntelrasihrAEQEKASLK 1127
Cdd:PRK12704  118 ELEQKQQELEKKEEELEELIEEQLQEL----ERISGLTAEE--AKEILLEKVEEE----------------ARHEAAVLI 175

                         170       180
                  ....*....|....*....|....*..
gi 568909977 1128 RSKEEqeqkllllqEAQVAAQKEAYEL 1154
Cdd:PRK12704  176 KEIEE---------EAKEEADKKAKEI 193
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 1036-1323 1.33e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 43.79  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1036 REKLREIAAERssvRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR---RALEDEVQEKDVLQHSNTEL 1112
Cdd:COG3096   280 RRELSERALEL---RRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhlNLVQTALRQQEKIERYQEDL 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1113 RASIHRAEQEKASLKRSKEEQEQklllLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEaeNQRKRQE 1192
Cdd:COG3096   357 EELTERLEEQEEVVEEAAEQLAE----AEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALE--KARALCG 430

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1193 VSDLQAQVSRDAQHRQKNLQES-----LELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAS-GETRAKQLEGHLCESQRA 1266
Cdd:COG3096   431 LPDLTPENAEDYLAAFRAKEQQateevLELEQKLSVADAARRQFEKAYELVCKIAGEVERSqAWQTARELLRRYRSQQAL 510

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568909977 1267 EQTLQ------AELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQL 1323
Cdd:COG3096   511 AQRLQqlraqlAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQA 573
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
905-1316 1.36e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.60  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  905 REKDTLSLSLAEEKEAAARWMEQQKELLtRSAADREALQGEIQNLKQERDESLLQLEHEMQ----QALSLKDAEKSLLSK 980
Cdd:COG4717    71 KELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLyqelEALEAELAELPERLE 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  981 ELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQL 1060
Cdd:COG4717   150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1061 NVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDV-------LQHSNTELRASIHRAEQEKASLKRSKEEQ 1133
Cdd:COG4717   230 EQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagvlfLVLGLLALLFLLLAREKASLGKEAEELQA 309

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1134 EQKLLLLQEAQVAAQKEAYEL-----RTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQ--H 1206
Cdd:COG4717   310 LPALEELEEEELEELLAALGLppdlsPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElrA 389

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1207 RQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEAsgETRAKQLEGHLCESQRAEQTLQAELCRITRKLQ--EA 1284
Cdd:COG4717   390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEL--EEELEELEEELEELEEELEELREELAELEAELEqlEE 467

                         410       420       430
                  ....*....|....*....|....*....|..
gi 568909977 1285 SNQADSLQRSLDNACSRVHVLEQELAKAEGAR 1316
Cdd:COG4717   468 DGELAELLQELEELKAELRELAEEWAALKLAL 499
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 664-866 1.40e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 42.83  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  664 ALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQ 743
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  744 VTNKKQALEKQLAQSL-----------------QDQEAQMDILQEALHEKN--------TLSEERAQLLAKQEALERHSE 798
Cdd:COG4942    95 LRAELEAQKEELAELLralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAparreqaeELRADLAELAALRAELEAERA 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977  799 LVTKEAADLRAERNSLENSLFEAQRLTTQLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETK 866
Cdd:COG4942   175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 1441-1659 1.44e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.50  E-value: 1.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1441 EQLQRDLADAEEGQRRAESALQSAQAARALQKEALQrLETEHLASARAAGQERRRLQEQVDTL----------RQALEES 1510
Cdd:PRK10929   78 PKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQ-VSSQLLEKSRQAQQEQDRAREISDSLsqlpqqqteaRRQLNEI 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1511 SRPSQSLADKGRLLEQP---LQQVLPHSRRDRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLkkeedRAML 1587
Cdd:PRK10929  157 ERRLQTLGTPNTPLAQAqltALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQAL-----RNQL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1588 GAKKElllqslshlhQEVDGALRQSQQLQAQMAELEQAHTQRLQ-------ELAAQHQR-DLAAEAQRLHEAQ-LQATQA 1658
Cdd:PRK10929  232 NSQRQ----------REAERALESTELLAEQSGDLPKSIVAQFKinrelsqALNQQAQRmDLIASQQRQAASQtLQVRQA 301


                  .
gi 568909977 1659 L 1659
Cdd:PRK10929  302 L 302
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
 427-681 1.51e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.50  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  427 QAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSG---YRQELRTSQRLL---------QDRAQEHEDLLGQLEAQRQ 494
Cdd:PRK10929   68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTdalEQEILQVSSQLLeksrqaqqeQDRAREISDSLSQLPQQQT 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  495 EAQ-------------------LSQASVHLLEREKEALETTMEEL--------------RAKADIREAETQKLEVTNAEL 541
Cdd:PRK10929  148 EARrqlneierrlqtlgtpntpLAQAQLTALQAESAALKALVDELelaqlsannrqelaRLRSELAKKRSQQLDAYLQAL 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  542 RRSLLLRAEQKAELAQQSERSLRELEAS--QGRVEQLE--EKVSGLRKELATSREALSSMQLQ--------RDILETEKE 609
Cdd:PRK10929  228 RNQLNSQRQREAERALESTELLAEQSGDlpKSIVAQFKinRELSQALNQQAQRMDLIASQQRQaasqtlqvRQALNTLRE 307

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  610 S---LHGALAQAESGNADL-----------------ELLVTRLKAEGM-EQQDSLAKmaallegLSQDKGTlnhlALQLE 668
Cdd:PRK10929  308 QsqwLGVSNALGEALRAQVarlpempkpqqldtemaQLRVQRLRYEDLlNKQPQLRQ-------IRQADGQ----PLTAE 376

                         330
                  ....*....|....*.
gi 568909977  669 QER---DQLREQQKML 681
Cdd:PRK10929  377 QNRildAQLRTQRELL 392
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
 427-1194 1.86e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 43.11  E-value: 1.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   427 QAVQAAIERRQQREQELRLrLESSQEEAAGLREQLSGYRQELRTSQRLlqdrAQEHEDLLGQLEAQRQEAQLSQASVHLL 506
Cdd:TIGR00606  193 QVRQTQGQKVQEHQMELKY-LKQYKEKACEIRDQITSKEAQLESSREI----VKSYENELDPLKNRLKEIEHNLSKIMKL 267

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   507 EREKEALETTmeELRAKADIREAETQKLEVTNAElrrslllrAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKE 586
Cdd:TIGR00606  268 DNEIKALKSR--KKQMEKDNSELELKMEKVFQGT--------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRL 337

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   587 LATSREALssmqlqrdILETEKESLHGALAQAESGNADLELLVTRLKAEgmeqqdslakmaalLEGLSQDKGTLNHLALQ 666
Cdd:TIGR00606  338 LNQEKTEL--------LVEQGRLQLQADRHQEHIRARDSLIQSLATRLE--------------LDGFERGPFSERQIKNF 395

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   667 LEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETcghLEQKQDHLEKQVVLLGQENAQLREQVG---Q 743
Cdd:TIGR00606  396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT---IELKKEILEKKQEELKFVIKELQQLEGssdR 472

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   744 VTNKKQALEKQLAQ-SLQDQEAQMDILqeaLHEKNTLSEERAQLLAKQEALErhselvtKEAADLRAERNSLENSLFEAQ 822
Cdd:TIGR00606  473 ILELDQELRKAERElSKAEKNSLTETL---KKEVKSLQNEKADLDRKLRKLD-------QEMEQLNHHTTTRTQMEMLTK 542

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   823 RLTTQLQTQQEQLEGKAEaaQLARRALQVEIERLKSDW---EVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTED 899
Cdd:TIGR00606  543 DKMDKDEQIRKIKSRHSD--ELTSLLGYFPNKKQLEDWlhsKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   900 LARLHREKDTLSLSLAEEKEaaarwMEQQKELLTRSAADREALQGEI----QNLKQERDES---------LLQLEHEMQQ 966
Cdd:TIGR00606  621 LSSYEDKLFDVCGSQDEESD-----LERLKEEIEKSSKQRAMLAGATavysQFITQLTDENqsccpvcqrVFQTEAELQE 695

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   967 ALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTM---TKELRTLQVQFEEAISTHQREADTLREK---LR 1040
Cdd:TIGR00606  696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIdlkEKEIPELRNKLQKVNRDIQRLKNDIEEQetlLG 775

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1041 EIAAERSSVR------REAEELQAQLNVAHERLAELRQELQASEesregLQREALGARRALEDEVQEKDVLQHSNTELRA 1114
Cdd:TIGR00606  776 TIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1115 SIHRAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVS 1194
Cdd:TIGR00606  851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
 465-810 1.99e-03

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 42.97  E-value: 1.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   465 RQELRTSQR--LLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLevtNAELR 542
Cdd:pfam15964  379 QQEKRAQEKeaLRKEMKKEREELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKV---CGEMR 455

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   543 RSLLLRAEQKAElaqqSERSLRELEASQGR-VEQLEEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESg 621
Cdd:pfam15964  456 YQLNQTKMKKDE----AEKEHREYRTKTGRqLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEH- 530

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   622 nadlELLVTRLKAEGMEQQDSLAKMAALLEglsqdkgtlnhlALQLEQERDQlrEQQKMLQQEQAGMREQLTQTGQQLGL 701
Cdd:pfam15964  531 ----QLHLTRLEKESIQQSFSNEAKAQALQ------------AQQREQELTQ--KMQQMEAQHDKTVNEQYSLLTSQNTF 592

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   702 IRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSE 781
Cdd:pfam15964  593 IAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQ 672

                          330       340
                   ....*....|....*....|....*....
gi 568909977   782 ERAQLLAKQEALERHSELVTKEAADLRAE 810
Cdd:pfam15964  673 QLVQLLSKQNQLFKERQNLTEEVQSLRSQ 701
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 643-1200 2.19e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 2.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   643 LAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAerrslketcghLEQKQDH 722
Cdd:TIGR04523  147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK-----------KIQKNKS 215

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   723 LEKQVVLLGQENAQLREQVGQVTNKKQALEKQLaQSLQDQEAQmdILQEALHEKNTLSEeraqllaKQEALERHSELVTk 802
Cdd:TIGR04523  216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEI-SNTQTQLNQ--LKDEQNKIKKQLSE-------KQKELEQNNKKIK- 284

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   803 eaaDLRAERNSLENSLFEAQRLTTQLQTQQEqlegKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQE 882
Cdd:TIGR04523  285 ---ELEKQLNQLKSEISDLNNQKEQDWNKEL----KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   883 QEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQKELltrsaadREALQGEIQNLKQERDESLLQLEH 962
Cdd:TIGR04523  358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL-------NQQKDEQIKKLQQEKELLEKEIER 430

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   963 EMQQALSLKDAEKSLLSK--ELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEA---ISTHQREADTLRE 1037
Cdd:TIGR04523  431 LKETIIKNNSEIKDLTNQdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKekeLKKLNEEKKELEE 510

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1038 KLREIAAERSSVRREAEELQAQLNVAHERLAELRQELqasEESREGLQREALgarralEDEVQEKDvlqhsntelrASIH 1117
Cdd:TIGR04523  511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL---NKDDFELKKENL------EKEIDEKN----------KEIE 571

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1118 RAEQEKASLKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQ 1197
Cdd:TIGR04523  572 ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651


                   ...
gi 568909977  1198 AQV 1200
Cdd:TIGR04523  652 ETI 654
Macoilin pfam09726
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ...
 426-605 2.29e-03

Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.


Pssm-ID: 462859 [Multi-domain]  Cd Length: 670  Bit Score: 42.53  E-value: 2.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   426 LQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQE---LRTS-QRLLQDRAQEHEDlLGQLEAQRQEAQLSQA 501
Cdd:pfam09726  404 IKKLKAELQASRQTEQELRSQISSLTSLERSLKSELGQLRQEndlLQTKlHNAVSAKQKDKQT-VQQLEKRLKAEQEARA 482

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   502 SVH-LLEREKEAleTTMEELRAKADIREAETQKLEVTNAELRRslllraeqKAELAQQSERSLRELEASQGRVEQLEEKV 580
Cdd:pfam09726  483 SAEkQLAEEKKR--KKEEEATAARAVALAAASRGECTESLKQR--------KRELESEIKKLTHDIKLKEEQIRELEIKV 552

                          170       180       190
                   ....*....|....*....|....*....|.
gi 568909977   581 SGLR------KELATSREALSSMQLQRDILE 605
Cdd:pfam09726  553 QELRkykeseKDTEVLMSALSAMQDKNQHLE 583
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
549-741 2.32e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.98  E-value: 2.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  549 AEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKELATSREALSSMQLQRDILETEKE--SLHGALAQAESGNADLE 626
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREiaELEAELERLDASSDDLA 688

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  627 LLvtrlkaegmeqQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQEQAGMrEQLTQTGQQLGLirAER 706
Cdd:COG4913   689 AL-----------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA-EDLARLELRALL--EER 754

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 568909977  707 RSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQV 741
Cdd:COG4913   755 FAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
MutS2 COG1193
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
926-1055 2.45e-03

dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];


Pssm-ID: 440806 [Multi-domain]  Cd Length: 784  Bit Score: 42.82  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  926 EQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEA 1005
Cdd:COG1193   503 ERARELLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEILEKAREEAEEILREARK 582

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 568909977 1006 TVTTMTKELRTLQVQFEEAISTHQReadtLREKLREIAAERSSVRREAEE 1055
Cdd:COG1193   583 EAEELIRELREAQAEEEELKEARKK----LEELKQELEEKLEKPKKKAKP 628
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 441-1161 2.50e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.65  E-value: 2.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   441 QELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQL-EAQRQEAQLSQASVHLLEREKEALETTMEE 519
Cdd:TIGR00618  190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTqQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   520 LRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRK---ELATSREALSS 596
Cdd:TIGR00618  270 EELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKqqsSIEEQRRLLQT 349

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   597 MQLQRDILETEKESLHGALAQAESGNADLELLVTrLKAEGMEQQDSLAKMAALLEGLSQDKGTL-------NHLALQLEQ 669
Cdd:TIGR00618  350 LHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQSLCKELDILQREQATIdtrtsafRDLQGQLAH 428

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   670 ERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQvvllgqenAQLREQVGQVTNKKQ 749
Cdd:TIGR00618  429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE--------TRKKAVVLARLLELQ 500

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   750 ALEKQLAQSLQDQEAQMdilqEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQLQ 829
Cdd:TIGR00618  501 EEPCPLCGSCIHPNPAR----QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   830 TQQEQLEGKAEAAQLARRALQVEIE---------RLKSDWEVRETKLQLHLGQLQQQAAQQEQEaqlalerqelahtEDL 900
Cdd:TIGR00618  577 QCDNRSKEDIPNLQNITVRLQDLTEklseaedmlACEQHALLRKLQPEQDLQDVRLHLQQCSQE-------------LAL 643

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   901 ARLHREKDTLSLSLAEEKEAAARWMEQQKELLTRSAADREALQGEIQNLKQERD--ESLLQLEHEMQQALSLKDAEKSLL 978
Cdd:TIGR00618  644 KLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDREFNEI 723

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   979 SKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQFEEAISThqreADTLREKLREIAAERSSVRREAEELQA 1058
Cdd:TIGR00618  724 ENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA----ALQTGAELSHLAAEIQFFNRLREEDTH 799

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1059 QLNvahERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQHS-NTELRASIHRAEQEKASLKRSKEEQEQKL 1137
Cdd:TIGR00618  800 LLK---TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEiTHQLLKYEECSKQLAQLTQEQAKIIQLSD 876

                          730       740
                   ....*....|....*....|....
gi 568909977  1138 LLLQEAQVAAQKEAYELRTRLQEL 1161
Cdd:TIGR00618  877 KLNGINQIKIQFDGDALIKFLHEI 900
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 850-1272 2.52e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.80  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   850 QVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELAHTEDLARLHREKDTLSLSLAEEKEAAARWMEQQK 929
Cdd:pfam15921  266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIE 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   930 EL----------LTRSAADREALQGEIQNLKQERDESLLQLeHEMQQALSLKDAEKSLLSKELSGAHRELERARQEA--Q 997
Cdd:pfam15921  346 ELekqlvlanseLTEARTERDQFSQESGNLDDQLQKLLADL-HKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELddR 424

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   998 NQQVQA-EATVTTMTKELrtlQVQFEEAISTHQREADTLrEKLREIAAERSS----VRREAEELQAQ---LNVAHERLAE 1069
Cdd:pfam15921  425 NMEVQRlEALLKAMKSEC---QGQMERQMAAIQGKNESL-EKVSSLTAQLEStkemLRKVVEELTAKkmtLESSERTVSD 500

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1070 LRQELQASEESREGLQREALGARRALEDEVQE-------KDVLQHSNTELRA-SIHRAEQEKASLKRSKEEQEQKLLLLQ 1141
Cdd:pfam15921  501 LTASLQEKERAIEATNAEITKLRSRVDLKLQElqhlkneGDHLRNVQTECEAlKLQMAEKDKVIEILRQQIENMTQLVGQ 580

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1142 EAQVAA---------QKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQ 1212
Cdd:pfam15921  581 HGRTAGamqvekaqlEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLN 660

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1213 ESLELQRQVAEAQAAHDGVQKEvlgLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQA 1272
Cdd:pfam15921  661 EVKTSRNELNSLSEDYEVLKRN---FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS 717
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 944-1241 2.59e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.70  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   944 GEIQNLKQERDESLLQLEHEMQQALSLKDaEKSLLSKELSGAHRELERARQEaQNQQVQAEATVTTMTKELRTLQVQ--- 1020
Cdd:TIGR04523  145 TEIKKKEKELEKLNNKYNDLKKQKEELEN-ELNLLEKEKLNIQKNIDKIKNK-LLKLELLLSNLKKKIQKNKSLESQise 222

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1021 FEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQ 1100
Cdd:TIGR04523  223 LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN 302

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1101 EKDvlQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQEaqvaaqkEAYELRTRLQELERAQRDTRRKLQERHRQVR 1180
Cdd:TIGR04523  303 QKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE-------QISQLKKELTNSESENSEKQRELEEKQNEIE 373

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568909977  1181 TLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQK 1241
Cdd:TIGR04523  374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET 434
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
425-677 2.74e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  425 ALQAVQAAIERRQQREQEL------RLRLESSQEEAAGLREQLsgyrQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQL 498
Cdd:COG4913   635 ALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAEL----ERLDASSDDLAALEEQLEELEAELEELEEELDE 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  499 SQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRslllraeqKAELAQQSERSLReleasqgrvEQLEE 578
Cdd:COG4913   711 LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF--------AAALGDAVERELR---------ENLEE 773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  579 KVSGLRKELATSREALssMQLQRDILETEKESLHGALAQAESGNADLELLvTRLKAEGMEQQdsLAKMAALLEGLSQDKg 658
Cdd:COG4913   774 RIDALRARLNRAEEEL--ERAMRAFNREWPAETADLDADLESLPEYLALL-DRLEEDGLPEY--EERFKELLNENSIEF- 847

                         250
                  ....*....|....*....
gi 568909977  659 tLNHLALQLEQERDQLREQ 677
Cdd:COG4913   848 -VADLLSKLRRAIREIKER 865
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 431-728 2.82e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 42.63  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  431 AAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRA----QEHEDLLGQLEAQRQEAQLSQASVHLL 506
Cdd:COG3096   836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANlladETLADRLEELREELDAAQEAQAFIQQH 915

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  507 EREKEALETTMEELRAkaDIREAETQKLEVTNA-ELRRSLLLRAEQKAELAQQS-----ERSLRELEASQGRVEQLEEKV 580
Cdd:COG3096   916 GKALAQLEPLVAVLQS--DPEQFEQLQADYLQAkEQQRRLKQQIFALSEVVQRRphfsyEDAVGLLGENSDLNEKLRARL 993

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  581 SGLRKELATSREALSSMQlqrdiletekeslhgalAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALleGLSQDKGTl 660
Cdd:COG3096   994 EQAEEARREAREQLRQAQ-----------------AQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL--GVQADAEA- 1053

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909977  661 nhlalqleQERDQLREQQkmLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVV 728
Cdd:COG3096  1054 --------EERARIRRDE--LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVV 1111
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 1049-1686 2.82e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.52  E-value: 2.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1049 VRREAEELQA---QLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDvlqhsnTELRASIHRAEQEKAS 1125
Cdd:pfam12128  239 IRPEFTKLQQefnTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD------DQWKEKRDELNGELSA 312

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1126 LKRSKEEQEQKLLLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHR----QVRTLEAENQRKRQEVSDLQAQVS 1201
Cdd:pfam12128  313 ADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKaltgKHQDVTAKYNRRRSKIKEQNNRDI 392

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1202 RDAQHRQKNLQESLELQRQVAEA--QAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAElcritR 1279
Cdd:pfam12128  393 AGIKDKLAKIREARDRQLAVAEDdlQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-----E 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1280 KLQEASNQADSLQRSldnACSRVHVLEQELAKAEGARCNAEAQLGRLWSTLcsglGQSRNLLASPKRPHSPTTGS----- 1354
Cdd:pfam12128  468 NFDERIERAREEQEA---ANAEVERLQSELRQARKRRDQASEALRQASRRL----EERQSALDELELQLFPQAGTllhfl 540

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1355 ---------------SQTRPGRQRTSPPTRSYSPARWPSPVPVDPKSEVIDV---AFVRDALR---DLVQGLLEAQQERd 1413
Cdd:pfam12128  541 rkeapdweqsigkviSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVpewAASEEELRerlDKAEEALQSAREK- 619

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1414 nsgiqVANLSSQLSEAERErlrlqsrVEQLQRDLADAEEGQRRAEsalqsaqaaralqkEALQRLETEHLASARAAGQER 1493
Cdd:pfam12128  620 -----QAAAEEQLVQANGE-------LEKASREETFARTALKNAR--------------LDLRRLFDEKQSEKDKKNKAL 673

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1494 RRLQEQVDTLRqaleessrpsQSLADKGRLLEQPLQQVLPHSRRDRAERR-----ALREQTTSLRTERARLQGELAALRT 1568
Cdd:pfam12128  674 AERKDSANERL----------NSLEAQLKQLDKKHQAWLEEQKEQKREARtekqaYWQVVEGALDAQLALLKAAIAARRS 743

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1569 RLiQTEQETLKKEEDRAMlgAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHtQRLQELAAQHQRDLAAEAQRL 1648
Cdd:pfam12128  744 GA-KAELKALETWYKRDL--ASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYF-DWYQETWLQRRPRLATQLSNI 819

                          650       660       670
                   ....*....|....*....|....*....|....*...
gi 568909977  1649 HEAQLQATQALESCEQIHQQRVKVLERQVASLKKRLDK 1686
Cdd:pfam12128  820 ERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857
PRK11281 PRK11281
mechanosensitive channel MscK;
1394-1657 2.83e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.59  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1394 VRDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERL------RLQSRVEQLQRDLADAEEGQRRAESALQSAQA- 1466
Cdd:PRK11281   78 QKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLstlslrQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTq 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1467 ---ARALQKEALQRLE--TEHLASARAAGQERRRLQEQVDTLRQALEESSRP--SQSLADKGRLleqplqQVLPHSRRDr 1539
Cdd:PRK11281  158 perAQAALYANSQRLQqiRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDlqRKSLEGNTQL------QDLLQKQRD- 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1540 aerralreqttsLRTER-ARLQGELAALRT-----RLIQTEQeTLKKEEDramlgAKKELLLQSLSHLHQEVDGALRQSQ 1613
Cdd:PRK11281  231 ------------YLTARiQRLEHQLQLLQEainskRLTLSEK-TVQEAQS-----QDEAARIQANPLVAQELEINLQLSQ 292

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 568909977 1614 QLQAQMAELEQAhTQrlQELAAQHQRDLAAEAQRLHEAQLQATQ 1657
Cdd:PRK11281  293 RLLKATEKLNTL-TQ--QNLRVKNWLDRLTQSERNIKEQISVLK 333
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
174-611 3.26e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  174 RQQLEHMQKANDTLARELTRATHSLVHLQRKLELQESQRLSLRQPRDILPLWRQAKALQTHLAELrastERGLTDVQADM 253
Cdd:COG4717    80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAEL----PERLEELEERL 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  254 TRTAQRLHmaclnldshlrltassmtsDLEQRLREQAREMLQLQGQWAAEKVALQARLSEQTLLVEKLSVQKEQGERAIL 333
Cdd:COG4717   156 EELRELEE-------------------ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  334 TLKSDIQRLKSRRSG--GQLAVDELRDEVESLHHVLASIKEVAQSDAMCPELAWSSSIEVREAQARLRSPPRSVSPHQRm 411
Cdd:COG4717   217 EAQEELEELEEELEQleNELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR- 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  412 spartsSPTSLHPALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQEHEDLLGQLEA 491
Cdd:COG4717   296 ------EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  492 QRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQkleVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQG 571
Cdd:COG4717   370 QEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ---LEELLGELEELLEALDEEELEEELEELEEELEELEE 446

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 568909977  572 RVEQLEEKVSGLRKELAT--SREALSSMQLQRDILETEKESL 611
Cdd:COG4717   447 ELEELREELAELEAELEQleEDGELAELLQELEELKAELREL 488
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 480-791 3.37e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 42.31  E-value: 3.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   480 QEHEDLLGQLEAQRQEAQLSQASVHLLEREKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQ- 558
Cdd:TIGR04523  169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEi 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   559 --SERSLRELEASQGRV-EQLEEKvsglRKELATSREALSSMQLQRDILETEKESLHGalaQAESGnadlelLVTRLKAE 635
Cdd:TIGR04523  249 snTQTQLNQLKDEQNKIkKQLSEK----QKELEQNNKKIKELEKQLNQLKSEISDLNN---QKEQD------WNKELKSE 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   636 GMEQQDslaKMAALLEGLSQDKGTLNhlalQLEQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGH 715
Cdd:TIGR04523  316 LKNQEK---KLEEIQNQISQNNKIIS----QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568909977   716 LEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEKQ---LAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQE 791
Cdd:TIGR04523  389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEierLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
1029-1250 3.43e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 42.31  E-value: 3.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1029 QREADTLREKLREIAAERSSVRREAE--ELQAQLNVAHERLAELRQELQASEESREGLQREALGARRALEDEVQEKDVLQ 1106
Cdd:COG3206   181 EEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1107 HSNT--ELRASIHRAEQEKASLKRSKEEQEQKLLllqeaqvaaqkeayELRTRLQELERA-QRDTRRKLQERHRQVRTLE 1183
Cdd:COG3206   261 QSPViqQLRAQLAELEAELAELSARYTPNHPDVI--------------ALRAQIAALRAQlQQEAQRILASLEAELEALQ 326

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977 1184 AENQRKRQEVSDLQAQVSRDAQHRQknlqESLELQRQVAEAQAAHDGvqkevlgLRQKLAEVEASGE 1250
Cdd:COG3206   327 AREASLQAQLAQLEARLAELPELEA----ELRRLEREVEVARELYES-------LLQRLEEARLAEA 382
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
1425-1648 4.29e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 4.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1425 QLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEHLASARAAGQERRRLQEQVDTLR 1504
Cdd:COG4913   236 DLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1505 QALEESsrpsqsladkgrlleqplqqvlphsrrdRAERRALREQTTSLRTER-ARLQGELAALRTRLIQTEQETLKKEED 1583
Cdd:COG4913   316 ARLDAL----------------------------REELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEAL 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568909977 1584 RAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQAQMAELEQAHTQRLQELAAQHqRDLAAEAQRL 1648
Cdd:COG4913   368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL-RELEAEIASL 431
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
 1022-1284 5.13e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 41.48  E-value: 5.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1022 EEAISTHQREADTLREKLREiAAERSSVRREAEELQAQLNvAHERLAELRQELQASEESREGLQREALGARRALEDEVQE 1101
Cdd:COG5185   281 NENANNLIKQFENTKEKIAE-YTKSIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEA 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1102 KDVLQHS---NTELRASIHRAEQEKASLKRSKEEQEQKLL-LLQEAQVAAQKEAYELR---TRLQELERAQRDTRRKLQE 1174
Cdd:COG5185   359 IKEEIENivgEVELSKSSEELDSFKDTIESTKESLDEIPQnQRGYAQEILATLEDTLKaadRQIEELQRQIEQATSSNEE 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1175 RHRQVRTLEAENQRKRQEVSDL-QAQVSRDAQHRQKNLQESLE-LQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR 1252
Cdd:COG5185   439 VSKLLNELISELNKVMREADEEsQSRLEEAYDEINRSVRSKKEdLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSK 518

                         250       260       270
                  ....*....|....*....|....*....|..
gi 568909977 1253 AKQLEGHLCESQRAEQTLQAELCRITRKLQEA 1284
Cdd:COG5185   519 LDQVAESLKDFMRARGYAHILALENLIPASEL 550
CHASE3 COG5278
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
430-844 5.66e-03

Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];


Pssm-ID: 444089 [Multi-domain]  Cd Length: 530  Bit Score: 41.43  E-value: 5.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  430 QAAIERRQQREQELRLRLESSQEEAAGLREQLSG--YRQELRTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQASVHLLE 507
Cdd:COG5278   114 ALIDQWLAELEQVIALRRAGGLEAALALVRSGEGkaLMDEIRARLLLLALALAALLLAAAALLLLLLALAALLALAELLL 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  508 REKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQLEEKVSGLRKEL 587
Cdd:COG5278   194 LALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAALALALALLLAALLLALLAALALAALLAAALLALAAL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  588 ATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQL 667
Cdd:COG5278   274 LLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAAAAAAAALAALLALALATALAAAAAALALLAALLAE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  668 EQERDQLREQQKMLQQEQAGMREQLTQTGQQLGLIRAERRSLKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNK 747
Cdd:COG5278   354 AAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALA 433

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  748 KQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTTQ 827
Cdd:COG5278   434 LAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAA 513

                         410
                  ....*....|....*..
gi 568909977  828 LQTQQEQLEGKAEAAQL 844
Cdd:COG5278   514 EAALAAALAAALASAEL 530
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
329-592 5.72e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 5.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  329 ERAILTLKSDIQRLKSRRSGGQLAVDELRDEVESLHHVLASIKEVAQSDamcpelawSSSIEVREAQARLRSPprsvspH 408
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS--------WDEIDVASAEREIAEL------E 674

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  409 QRMSPARTSSPTslhpaLQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSGYRQELRTSQRLLQDRAQ-EHEDLLG 487
Cdd:COG4913   675 AELERLDASSDD-----LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlARLELRA 749

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  488 QLEAQRQEAQLSQASVHL---LEREKEALETTMEELRAK-ADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSL 563
Cdd:COG4913   750 LLEERFAAALGDAVERELrenLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDGL 829

                         250       260       270
                  ....*....|....*....|....*....|.
gi 568909977  564 RELEA--SQGRVEQLEEKVSGLRKELATSRE 592
Cdd:COG4913   830 PEYEErfKELLNENSIEFVADLLSKLRRAIR 860
PRK09039 PRK09039
peptidoglycan -binding protein;
1409-1530 6.29e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 40.72  E-value: 6.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1409 QQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAARALQKEALQRLETEhLASARA 1488
Cdd:PRK09039   52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE-LDSEKQ 130

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977 1489 AGQERRR----LQEQVDTLRQ-------ALEESSRPSQS----LADKGRLLEQPLQQ 1530
Cdd:PRK09039  131 VSARALAqvelLNQQIAALRRqlaaleaALDASEKRDREsqakIADLGRRLNVALAQ 187
mukB PRK04863
chromosome partition protein MukB;
1411-1695 6.65e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.48  E-value: 6.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1411 ERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAqaaralqkealqrleTEHLASARAAg 1490
Cdd:PRK04863  280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA---------------SDHLNLVQTA- 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1491 qerRRLQEQVDTLRQALEESSRpsqsladkgRLLEQPLQQVLPHSRRDRAERRALR--EQTTSLRTERARLQGELAALRT 1568
Cdd:PRK04863  344 ---LRQQEKIERYQADLEELEE---------RLEEQNEVVEEADEQQEENEARAEAaeEEVDELKSQLADYQQALDVQQT 411

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1569 RLIQTEQETLKKEEDRAMLGA------KKELLLQSLSHLHQEVDGALRQSQQlqaQMAELEQAHTQrlQELAAQHQRDLA 1642
Cdd:PRK04863  412 RAIQYQQAVQALERAKQLCGLpdltadNAEDWLEEFQAKEQEATEELLSLEQ---KLSVAQAAHSQ--FEQAYQLVRKIA 486

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568909977 1643 AEAQRlHEAQLQATQALE--SCEQIHQQRVKVLERQVASLKKRLDKEvwQRQQQA 1695
Cdd:PRK04863  487 GEVSR-SEAWDVARELLRrlREQRHLAEQLQQLRMRLSELEQRLRQQ--QRAERL 538
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 747-1326 6.77e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 41.50  E-value: 6.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   747 KKQALEKQLAQSLQDQEAQMDILQEALHEKNTLSEERAQLLAKQEALERHSELVTKEAADLRAERNSLENSLFEAQRLTT 826
Cdd:pfam02463  171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   827 QLQTQQEQLEGKAEAAQLARRALQVEIERLKSDWEVRETKLQLHLGQLQQQAAQQEQEAQLALERQELaHTEDLARLHRE 906
Cdd:pfam02463  251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE-SEKEKKKAEKE 329

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   907 KDTLSLSLAEEKEAAARWmEQQKELLTRSAADREALQGEIQNLKQERDESLLQLEHEMQQALSLKDAEKSLLSKELSGAH 986
Cdd:pfam02463  330 LKKEKEEIEELEKELKEL-EIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   987 RELERARQEA-QNQQVQAEATVTTMTKELRTLQVQFEEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHE 1065
Cdd:pfam02463  409 LLLELARQLEdLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1066 RLAELRQEL--------QASEESREGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKL 1137
Cdd:pfam02463  489 LLSRQKLEErsqkeskaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1138 LLLQEAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVSRDAQHRQKNLQESLEL 1217
Cdd:pfam02463  569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  1218 QRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETRAKQLEGHLCESQRAEQTLQAELCRITRKLQEASNQADSLQRSLDN 1297
Cdd:pfam02463  649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ 728

                          570       580
                   ....*....|....*....|....*....
gi 568909977  1298 ACSRVHVLEQELAKAEGARCNAEAQLGRL 1326
Cdd:pfam02463  729 EAQDKINEELKLLKQKIDEEEEEEEKSRL 757
mukB PRK04863
chromosome partition protein MukB;
1402-1636 6.99e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.48  E-value: 6.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1402 VQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLADAEEGQRRAESALQSAQAA-------RALQ--K 1472
Cdd:PRK04863  420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsrsEAWDvaR 499

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1473 EALQRLETEHLASARAAGQE------RRRLQEQVDT---LRQALEESSRPSQSLADKGRLLEQ------PLQQVLPHSRR 1537
Cdd:PRK04863  500 ELLRRLREQRHLAEQLQQLRmrlselEQRLRQQQRAerlLAEFCKRLGKNLDDEDELEQLQEElearleSLSESVSEARE 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1538 DRAERRALREQTTSLRTERARLQGELAALRTRLIQTEQETLKKEEDRAMLGAKKELLLQSLSHLHQEVDGALRQSQQLQA 1617
Cdd:PRK04863  580 RRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDE 659

                         250       260
                  ....*....|....*....|..
gi 568909977 1618 QMAELEQAHT---QRLQELAAQ 1636
Cdd:PRK04863  660 EIERLSQPGGsedPRLNALAER 681
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
555-768 7.25e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 7.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  555 LAQQSERSLRELEASQGRVEQLEEKVSGLRKELAT--SREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRL 632
Cdd:COG3206   166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  633 KAEGMEQQDSLAKMAALlEGLSQDKGTLNHLALQLEQERDQLREQQ---KMLQQEQAGMREQLTQTGQQ-LGLIRAERRS 708
Cdd:COG3206   246 RAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIAALRAQLQQEAQRiLASLEAELEA 324

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  709 LKETCGHLEQKQDHLEKQVVLLGQENAQLREQVGQVTNKKQALEkQLAQSLQDQEAQMDI 768
Cdd:COG3206   325 LQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYE-SLLQRLEEARLAEAL 383
mukB PRK04863
chromosome partition protein MukB;
1036-1326 7.54e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.10  E-value: 7.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1036 REKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESREGLQREALGAR----RALEDEVQEKDVLQHSNTE 1111
Cdd:PRK04863  278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhlnLVQTALRQQEKIERYQADL 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1112 LRASIHRAEQEKASlkrskEEQEQKLLLLQEAQVAAQKEAYELRTRL----QELERAQrdtRRKLQERHRQVRTLEAE-- 1185
Cdd:PRK04863  358 EELEERLEEQNEVV-----EEADEQQEENEARAEAAEEEVDELKSQLadyqQALDVQQ---TRAIQYQQAVQALERAKql 429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1186 NQRKRQEVSDLQAQVSRDAQHRQKNLQESLELQRQVAEAQAAHDGVQKEVLGLRQKLAEVEASGETR-AKQLEGHLcESQ 1264
Cdd:PRK04863  430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDvARELLRRL-REQ 508

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568909977 1265 RAEQTLQAELCRITRKLQEASNQADSLQRSLDNACSRVHVLEQELAKAEGARCNAEAQLGRL 1326
Cdd:PRK04863  509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESL 570
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 114-633 7.83e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.26  E-value: 7.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   114 EELASRCHMVSQRLQARLDTTEARLRKSELEHSMDLEEALSRLEasQQRSMGLSQVnTLLRQQLEHMQKANDTLARELTR 193
Cdd:pfam15921  305 QEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE--KQLVLANSEL-TEARTERDQFSQESGNLDDQLQK 381

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   194 ATHSLVHLQRKLELQESQRLSLRQpRD------ILPLWRQAKALQTHLAELRASTERGLTDVQADMTRtaqrlHMACLNL 267
Cdd:pfam15921  382 LLADLHKREKELSLEKEQNKRLWD-RDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMER-----QMAAIQG 455

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   268 DSHLRLTASSMTSDLEQRlREQAREMLQlqgQWAAEKVALQArlSEQTllVEKLSVQKEQGERAILTLKSDIQRLKSRRS 347
Cdd:pfam15921  456 KNESLEKVSSLTAQLEST-KEMLRKVVE---ELTAKKMTLES--SERT--VSDLTASLQEKERAIEATNAEITKLRSRVD 527

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   348 GGQLAVDELRDEVESLHHVLasikevAQSDAMCPELAWSSSIeVREAQARLRSPPRSVSPHQRMSPARTSSPTSLHP--- 424
Cdd:pfam15921  528 LKLQELQHLKNEGDHLRNVQ------TECEALKLQMAEKDKV-IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKein 600

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   425 ----ALQAVQAAIERRQQREQELRLRLESSQEEAAGLREQLSgyrqelrTSQRLLQDRAQEHEDLLGQLEAQRQEAQLSQ 500
Cdd:pfam15921  601 drrlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKTSRNELNSLS 673

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977   501 ASVHLLER----EKEALETTMEELRAKADIREAETQKLEVTNAELRRSLLLRAEQKAELAQQSERSLRELEASQGRVEQL 576
Cdd:pfam15921  674 EDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFL 753

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 568909977   577 EEKVSGLRKELATSREALSSMQLQRDILETEKESLHGALAQAESGNADLELLVTRLK 633
Cdd:pfam15921  754 EEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
mukB PRK04863
chromosome partition protein MukB;
1395-1688 8.56e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 41.10  E-value: 8.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1395 RDALRDLVQGLLEAQQERDNSGIQVANLSSQLSEAERERLRLQSRVEQLQRDLadaEEGQRRaesALQSAQAARALQK-E 1473
Cdd:PRK04863  354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL---DVQQTR---AIQYQQAVQALERaK 427

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1474 ALQRLETEHLASARAAGQERRRLQEQVDTLRQALEESSRPSQSLADKGRLLEQPLQQVLPHSRRDRAER--RALREQTTS 1551
Cdd:PRK04863  428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDvaRELLRRLRE 507

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977 1552 LRTERARLQG---ELAALRTRLI--QTEQETLKKEEDRAMLG----AKKELLLQSLSHLHQEVDGALRQSQQLQAQMAEL 1622
Cdd:PRK04863  508 QRHLAEQLQQlrmRLSELEQRLRqqQRAERLLAEFCKRLGKNlddeDELEQLQEELEARLESLSESVSEARERRMALRQQ 587

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568909977 1623 EQAHTQRLQELAAQHQRDLAAEA--QRLHE---AQLQATQALESCEQIHQQRVKVLER---QVASLKKRLDKEV 1688
Cdd:PRK04863  588 LEQLQARIQRLAARAPAWLAAQDalARLREqsgEEFEDSQDVTEYMQQLLERERELTVerdELAARKQALDEEI 661
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 619-698 9.46e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 40.71  E-value: 9.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909977  619 ESGNADLELLVTRLKAEGMEQQDSLAKMAALLEGLSQDKGTLNHLALQLEQERDQLREQQKMLQQE----QAGMREQLTQ 694
Cdd:PRK11448  141 ENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKaaetSQERKQKRKE 220


                  ....
gi 568909977  695 TGQQ 698
Cdd:PRK11448  221 ITDQ 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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