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Conserved domains on  [gi|578801728|ref|XP_006711693|]
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uncharacterized protein C1orf105 isoform X6 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4548 super family cl20951
Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins ...
 8-123 1.42e-80

Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 178 amino acids in length. The human member of this family is C1orf105.


The actual alignment was detected with superfamily member pfam15081:

Pssm-ID: 373540  Cd Length: 167  Bit Score: 234.03  E-value: 1.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578801728    8 ARRNQCDSMLLRNQQLCSTCQEMKMVQPRTMKIPDDPKASFENCMSYR-MSLHQPKFQTTPEPFHDDIPTESIHYRLPIL 86
Cdd:pfam15081  51 ARRNQNDSMLLRNKQLCSTCQEVKMVQPRTMIIPDDLKASFENCMSHRmMSLHQPKAQTTPKPSHDDIPTESIHYRLPIL 130

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 578801728   87 GPRTAVFHGLLTEAYKTLKERQRSSLPRKEPIGKTTR 123
Cdd:pfam15081 131 GPRTAVFHGLLSDAYKTLRETQLSSLPRKEPTGKTVR 167
 
Name Accession Description Interval E-value
DUF4548 pfam15081
Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins ...
 8-123 1.42e-80

Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 178 amino acids in length. The human member of this family is C1orf105.


Pssm-ID: 373540  Cd Length: 167  Bit Score: 234.03  E-value: 1.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578801728    8 ARRNQCDSMLLRNQQLCSTCQEMKMVQPRTMKIPDDPKASFENCMSYR-MSLHQPKFQTTPEPFHDDIPTESIHYRLPIL 86
Cdd:pfam15081  51 ARRNQNDSMLLRNKQLCSTCQEVKMVQPRTMIIPDDLKASFENCMSHRmMSLHQPKAQTTPKPSHDDIPTESIHYRLPIL 130

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 578801728   87 GPRTAVFHGLLTEAYKTLKERQRSSLPRKEPIGKTTR 123
Cdd:pfam15081 131 GPRTAVFHGLLSDAYKTLRETQLSSLPRKEPTGKTVR 167
 
Name Accession Description Interval E-value
DUF4548 pfam15081
Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins ...
 8-123 1.42e-80

Domain of unknown function (DUF4548); This family of proteins is found in eukaryotes. Proteins in this family are typically between and 178 amino acids in length. The human member of this family is C1orf105.


Pssm-ID: 373540  Cd Length: 167  Bit Score: 234.03  E-value: 1.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578801728    8 ARRNQCDSMLLRNQQLCSTCQEMKMVQPRTMKIPDDPKASFENCMSYR-MSLHQPKFQTTPEPFHDDIPTESIHYRLPIL 86
Cdd:pfam15081  51 ARRNQNDSMLLRNKQLCSTCQEVKMVQPRTMIIPDDLKASFENCMSHRmMSLHQPKAQTTPKPSHDDIPTESIHYRLPIL 130

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 578801728   87 GPRTAVFHGLLTEAYKTLKERQRSSLPRKEPIGKTTR 123
Cdd:pfam15081 131 GPRTAVFHGLLSDAYKTLRETQLSSLPRKEPTGKTVR 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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