|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2132-2166 |
1.29e-15 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.19 E-value: 1.29e-15
10 20 30
....*....|....*....|....*....|....*
gi 578837046 2132 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2166
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2132-2166 |
6.82e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 6.82e-14
10 20 30
....*....|....*....|....*....|....*
gi 578837046 2132 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2166
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-205 |
3.71e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 3.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170
....*....|....*.
gi 578837046 190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457 142 DDADALYNLGIALEKL 157
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1890-2133 |
4.18e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 68.81 E-value: 4.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 1962
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1963 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA--PTSSPAEPHCWPAEaalgtgaE 2039
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpAVSRSTESFALPPD-------Q 2904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2040 PTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAt 2118
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA- 2983
|
250
....*....|....*
gi 578837046 2119 kfPPEITVTPPTPTL 2133
Cdd:PHA03247 2984 --PSREAPASSTPPL 2996
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1890-2159 |
2.31e-10 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 65.75 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 1965
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1966 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVaeGTSFPpqeprhspqvkMAPTSSPAEPHCWPAE-AALGTGAEPTCS 2043
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAV--GNSSP-----------AAGTVTAAVGTVTPAAlATLAAAAGTVAS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2044 QEGKLR---PEPRRDGEAQEAASETQPLS-SPPTAASSKAPSS--GSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPS-- 2115
Cdd:pfam17823 266 AAGTINmgdPHARRLSPAKHMPSDTMARNpAAPMGAQAQGPIIqvSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTnl 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578837046 2116 -------AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2159
Cdd:pfam17823 346 avvtttkAQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1851-2131 |
6.20e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 6.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1851 RVERIMSETYMLIKQHLPV--KVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvp 1928
Cdd:NF033839 229 QIVALIKELDELKKQALSEidNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP-- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1929 adsvqrpsdaHTKPRPALAAAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEP 2008
Cdd:NF033839 298 ----------GMQPSPQPEKK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2009 RHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTcsqegklRPEPRRDGEAQEAASETQPlsSPPTAASSKAPSSGSAQP- 2087
Cdd:NF033839 349 TPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPE-------TPKPEVKPQPEKPKPEVKP--QPEKPKPEVKPQPEKPKPe 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 578837046 2088 --PEGHPGKPE--PSRAKS----RPLPNMPKLVIPSAATKFPPEITVTPPTP 2131
Cdd:NF033839 420 vkPQPEKPKPEvkPQPEKPkpevKPQPEKPKPEVKPQPETPKPEVKPQPEKP 471
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
1969-2109 |
1.70e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.30 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1969 DPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC------WPAEAALGTGAEPTC 2042
Cdd:NF040712 189 DPDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragveQPEDEPVGPGAAPAA 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837046 2043 SQEGKLRPEPRRdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMP 2109
Cdd:NF040712 269 EPDEATRDAGEP--PAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRrRRASVP 334
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
1889-2131 |
1.52e-03 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1889 GAAAQRQASGDTPTTPKH----PKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiitcpPSASASTL 1964
Cdd:COG5180 152 AALLQRSDPILAKDPDGDsastLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLT-----GGADHPRP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1965 DQSKDPGPPRPHRPEATPSMASLGPEGEEL-------ARVAEGTSFPPQEPRHSPQ-------VKMAPTSSPAEPHCWPA 2030
Cdd:COG5180 227 EAASSPKVDPPSTSEARSRPATVDAQPEMRppadakeRRRAAIGDTPAAEPPGLPVleagsepQSDAPEAETARPIDVKG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2031 EAALGTGAEPTCSQEGKLRPEPRRDGEAQEaasetQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKS------RP 2104
Cdd:COG5180 307 VASAPPATRPVRPPGGARDPGTPRPGQPTE-----RPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRpgssggDG 381
|
250 260
....*....|....*....|....*..
gi 578837046 2105 LPNMPKLVIPSAATKFPPeiTVTPPTP 2131
Cdd:COG5180 382 APFQPPNGAPQPGLGRRG--APGPPMG 406
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
1991-2101 |
1.95e-03 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 42.80 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1991 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQEGKlrpEPRRDGEAQEAASETQPLSS 2070
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAK---EHGIDLSAVPGTGVTGRVTK 142
|
90 100 110
....*....|....*....|....*....|.
gi 578837046 2071 PPTAASSKAPSsgSAQPPEGHPGKPEPSRAK 2101
Cdd:TIGR01347 143 EDIIKKTEAPA--SAQPPAAAAAAAAPAAAT 171
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
36-119 |
2.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 36 AFALYHKALDLQKHDRFEESAKAYHELLEaslLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70
|
....
gi 578837046 116 AVML 119
Cdd:pfam13424 71 ALAL 74
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
1976-2119 |
4.43e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 40.06 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1976 HRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRD 2055
Cdd:cd21975 19 HGVRPDPEGAGLAAGLDVRATREVAKGPGPPGPAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578837046 2056 GEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGkPEPSRAKSRPLPNMPKLVIPSAATK 2119
Cdd:cd21975 99 DSDVAPASGAAASTSPESSSDAASSPSPLSLLHPGEAG-LEPERPRPRVRRGVRRRGVTPAAKR 161
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2132-2166 |
1.29e-15 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.19 E-value: 1.29e-15
10 20 30
....*....|....*....|....*....|....*
gi 578837046 2132 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2166
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2132-2166 |
6.82e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 6.82e-14
10 20 30
....*....|....*....|....*....|....*
gi 578837046 2132 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2166
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-205 |
3.71e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 3.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170
....*....|....*.
gi 578837046 190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457 142 DDADALYNLGIALEKL 157
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1890-2133 |
4.18e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 68.81 E-value: 4.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 1962
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1963 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA--PTSSPAEPHCWPAEaalgtgaE 2039
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpAVSRSTESFALPPD-------Q 2904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2040 PTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAt 2118
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA- 2983
|
250
....*....|....*
gi 578837046 2119 kfPPEITVTPPTPTL 2133
Cdd:PHA03247 2984 --PSREAPASSTPPL 2996
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1888-2138 |
1.14e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.66 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1888 LGAAAQRQASGDTPTTPKHPKDSRenffpVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQS 1967
Cdd:PHA03247 2723 PGPAAARQASPALPAAPAPPAVPA-----GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1968 KdPGPPRPhrpeATPSMASLGPEGEELARVAEGTSFPPqePRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTcsqegk 2047
Cdd:PHA03247 2798 L-PSPWDP----ADPPAAVLAPAAALPPAASPAGPLPP--PTSAQPTAPPPPPGPPPPSL-PLGGSVAPGGDVR------ 2863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2048 lRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSgSAQPPEGHPGKPEPSrAKSRPLPNMPKLVIPSAATKFPPEITVT 2127
Cdd:PHA03247 2864 -RRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES-FALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
|
250
....*....|.
gi 578837046 2128 PPTPTLLSPKG 2138
Cdd:PHA03247 2941 PPLAPTTDPAG 2951
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1901-2171 |
1.32e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1901 PTTPKHPKDSRENFFPVTVVPTAPDPVPADS-VQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPE 1979
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1980 ATPSMASLGPEGEELARVAEGTSFPPqeprhsPQVKMAPTSSPAEPHCWPAEAALGTGAEPTcsqeGKLRPEPRRDGEAQ 2059
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPA------LPAAPAPPAVPAGPATPGGPARPARPPTTA----GPPAPAPPAAPAAG 2778
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2060 EAASETQPLSSPPTAASSKAPS-SGSAQPPEGHPGKPEPSRAKSRPLPNMPKlviPSAATKFPPEITVTPPTPTL----- 2133
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSpWDPADPPAAVLAPAAALPPAASPAGPLPP---PTSAQPTAPPPPPGPPPPSLplggs 2855
|
250 260 270
....*....|....*....|....*....|....*...
gi 578837046 2134 LSPKGSISEETKQKLKSAILSAQSAANVRkeSLCQPAL 2171
Cdd:PHA03247 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVR--RLARPAV 2891
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1896-2162 |
1.77e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 66.73 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1896 ASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATT--IITCPPSASA----STLDQSKD 1969
Cdd:PHA03307 124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPeeTARAPSSPPAepppSTPPAAAS 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1970 PGPPRPHRPEATPSM--ASLGPEGEELARVAEGTSFPPQEPRHSP--QVKMAPTSSPA--EPHCWPAEAALGTGAEPTCS 2043
Cdd:PHA03307 204 PRPPRRSSPISASASspAPAPGRSAADDAGASSSDSSSSESSGCGwgPENECPLPRPApiTLPTRIWEASGWNGPSSRPG 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2044 QEGKLRPEPRRDGEAQEAASETQPLSSPPT----------AASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNmpklvi 2113
Cdd:PHA03307 284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRasssssssreSSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP------ 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 578837046 2114 PSAATKFPPE-ITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVR 2162
Cdd:PHA03307 358 PPADPSSPRKrPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1890-2159 |
2.31e-10 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 65.75 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 1965
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1966 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVaeGTSFPpqeprhspqvkMAPTSSPAEPHCWPAE-AALGTGAEPTCS 2043
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAV--GNSSP-----------AAGTVTAAVGTVTPAAlATLAAAAGTVAS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2044 QEGKLR---PEPRRDGEAQEAASETQPLS-SPPTAASSKAPSS--GSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPS-- 2115
Cdd:pfam17823 266 AAGTINmgdPHARRLSPAKHMPSDTMARNpAAPMGAQAQGPIIqvSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTnl 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 578837046 2116 -------AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2159
Cdd:pfam17823 346 avvtttkAQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
34-199 |
7.02e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.95 E-value: 7.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 34 AEAFALYHKALDLQkhdrfEESAKAYHELleASLLREAvssGDEKEGLKH--------PGLIlkySTYKNLAQLAAQRED 105
Cdd:COG0457 25 EEAIEDYEKALELD-----PDDAEALYNL--GLAYLRL---GRYEEALADyeqaleldPDDA---EALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 106 LETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKAL 185
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170
....*....|....
gi 578837046 186 EKDCRYSKGLVLKE 199
Cdd:COG0457 172 AAALAALLAAALGE 185
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
30-188 |
2.30e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 2.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAsllreavssgdekeglkHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALAL-----------------NPDN---AEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578837046 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1897-2170 |
5.63e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.88 E-value: 5.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1897 SGDTPttPKHPKDSRENFFPVTVVPTAPDPVPADSVQRpSDAHTKPRPALAAATTIITCPPSASASTLDQSkdPGPPRPH 1976
Cdd:PHA03247 2548 AGDPP--PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVT-SRARRPDAPPQSARPRAPVDDRGDPRGPAPPS--PLPPDTH 2622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1977 RPEATPSMASlgPEGEELARVAEGTSFPPQEPRHSPQVK-----------------MAPTSSPAEPHCWPAEAALGTGAE 2039
Cdd:PHA03247 2623 APDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDPAPGrvsrprrarrlgraaqaSSPPQRPRRRAARPTVGSLTSLAD 2700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2040 PTcsqegklrPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKP----EPSRAKSRPLPNMPklviPS 2115
Cdd:PHA03247 2701 PP--------PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPatpgGPARPARPPTTAGP----PA 2768
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 578837046 2116 AAtkfPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPA 2170
Cdd:PHA03247 2769 PA---PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
30-205 |
1.13e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.59 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAS---------LLREAVSSGDEKEGLKHPGLILKYS-----TYKN 95
Cdd:COG2956 70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDpddaealrlLAEIYEQEGDWEKAIEVLERLLKLGpenahAYCE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 96 LAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYT 175
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
170 180 190
....*....|....*....|....*....|
gi 578837046 176 TCLYFICKALEKDCRYSKGLVLKEKIFEEQ 205
Cdd:COG2956 230 EALELLRKALELDPSDDLLLALADLLERKE 259
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
33-188 |
6.89e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 6.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 33 EAEAFALYHKALDLQKHDRFEESAKAYHELLEASllreavssGDEKEGlkhpglilkystYKNLAQLAAQREDLETAMEF 112
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELD--------PDNPEA------------FALLGEILLQLGDLDEAIVL 60
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837046 113 YLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG4783 61 LHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1866-2159 |
7.20e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.00 E-value: 7.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1866 HLPVKVDEEAALEQAVKFCQVHLGAAAQrQASGDTPTTPK-HPKDS-RENFFPVTVVPTAPDPVPADSVQRPSDAHTKPR 1943
Cdd:pfam05109 453 HVPTNLTAPASTGPTVSTADVTSPTPAG-TTSGASPVTPSpSPRDNgTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1944 PALAAATTIITCPPSASASTLDQSKDPGPP-RPHRPEAT-PSMASLGPEGEELARVAEGTSfpPQEPRHSPQVK-----M 2016
Cdd:pfam05109 532 PNATSPTLGKTSPTSAVTTPTPNATSPTPAvTTPTPNATiPTLGKTSPTSAVTTPTPNATS--PTVGETSPQANttnhtL 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2017 APTSSPAEPHCWP--AEAALGTGAEPTCSQEG---KLRPEPRRDG---EAQEAASETQPL--SSPPTAA---SSKAPSSG 2083
Cdd:pfam05109 610 GGTSSTPVVTSPPknATSAVTTGQHNITSSSTssmSLRPSSISETlspSTSDNSTSHMPLltSAHPTGGeniTQVTPAST 689
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837046 2084 SAQPPEGHPGKPEPSRAKSRPLPNMpklviPSAATKfPPEITVTPPTPtllsPKGSISEETKQKLKSAILSAQSAA 2159
Cdd:pfam05109 690 STHHVSTSSPAPRPGTTSQASGPGN-----SSTSTK-PGEVNVTKGTP----PKNATSPQAPSGQKTAVPTVTSTG 755
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1921-2160 |
2.40e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.40 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1921 PTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTldqskdpgPPRPHRPEATPSMASLGPEGEELARVAEG 2000
Cdd:PRK07003 374 ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA--------AAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2001 TSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTG-AEPTCSQEgklrPEPRRDGEAQEAASETQPLSSPPTAASSKA 2079
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASdAPPDAAFE----PAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2080 PSSGSAQPPEGHPGKP----EPSRA--------------------KSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLS 2135
Cdd:PRK07003 522 PAAAAPPAPEARPPTPaaaaPAARAggaaaaldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRA 601
|
250 260
....*....|....*....|....*
gi 578837046 2136 PKGSiseeTKQKLKSAILSAQSAAN 2160
Cdd:PRK07003 602 RAAT----GDAPPNGAARAEQAAES 622
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1899-2172 |
8.99e-07 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 54.30 E-value: 8.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1899 DTPTTPKHP---KDSRENFFPVTVVPTAP---DPVPADSVQRPSdAHTKPRPALAAATTIITCPPSASAstldQSKDPGP 1972
Cdd:PHA03378 607 EPPTTQSHIpetSAPRQWPMPLRPIPMRPlrmQPITFNVLVFPT-PHQPPQVEITPYKPTWTQIGHIPY----QPSPTGA 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1973 PRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPaephcwpaeaalgtgaeptcsqeGKLRPep 2052
Cdd:PHA03378 682 NTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAP-----------------------GRARP-- 736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2053 rrdgeAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSrpLPNMPKLVIPSAATKFPPeiTVTPPTPT 2132
Cdd:PHA03378 737 -----PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQ--APPAPQQRPRGAPTPQPP--PQAGPTSM 807
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 578837046 2133 LLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALE 2172
Cdd:PHA03378 808 QLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALE 847
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1896-2146 |
1.07e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 54.30 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1896 ASGDTPTTP--KHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIitcPPSASAstldqskdPGPP 1973
Cdd:PHA03378 646 LVFPTPHQPpqVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAP--------PGRA 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1974 RPhrPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQEGKLRPEPR 2053
Cdd:PHA03378 715 QR--PAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG-----RARPPAAAPGAPTPQPPPQAPPAPQ 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2054 RdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRplpNMPKLVIPSAATKFPPEItvtpPTPtl 2133
Cdd:PHA03378 788 Q--RPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKR---GRPSLKKPAALERQAAAG----PTP-- 856
|
250
....*....|...
gi 578837046 2134 lSPKGSISEETKQ 2146
Cdd:PHA03378 857 -SPGSGTSDKIVQ 868
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1918-2137 |
1.19e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 53.68 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1918 TVVPTAPDPVPADSVQRPSDAHTKPRPAlaaattiitcpPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARV 1997
Cdd:PRK14086 91 SAGEPAPPPPHARRTSEPELPRPGRRPY-----------EGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1998 AEGTSFPPQEPRHSPqvkmaptsSPAEPHCWPAEAAlgTGAEPTCSQEGKLRPE---PRRDGEAQEaasetqPLSSPPTA 2074
Cdd:PRK14086 160 RAADDYGWQQQRLGF--------PPRAPYASPASYA--PEQERDREPYDAGRPEydqRRRDYDHPR------PDWDRPRR 223
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837046 2075 ASSKAP--SSGSAQPPEGHPGKPEPSRAKSRPlpnmpklVIPSAATKFP--PEITVTPPTPTL-LSPK 2137
Cdd:PRK14086 224 DRTDRPepPPGAGHVHRGGPGPPERDDAPVVP-------IRPSAPGPLAaqPAPAPGPGEPTArLNPK 284
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1895-2121 |
1.34e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 53.73 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1895 QASGDT-PTTPKHPKDSRENffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA-STLDQSKDPGP 1972
Cdd:PRK12323 367 QSGGGAgPATAAAAPVAQPA--PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlAAARQASARGP 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1973 PRPHRPEATPSMAslgPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEP 2052
Cdd:PRK12323 445 GGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578837046 2053 RRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRpLPNMPKLVIPSAATKFP 2121
Cdd:PRK12323 522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG-LPDMFDGDWPALAARLP 589
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1884-2109 |
1.67e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.45 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1884 CQVHLGAAAQRQASGDTPTTPKHPKDSRENffpvTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAST 1963
Cdd:PRK07764 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEE----AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1964 LDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcWPAEAALGTGAEPTCS 2043
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ-PPQAAQGASAPSPAAD 736
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837046 2044 QEGKLRPEPRRDGEAQEAasetqPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMP 2109
Cdd:PRK07764 737 DPVPLPPEPDDPPDPAGA-----PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1922-2129 |
2.47e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 52.96 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1922 TAPDPVPADSVQRPSDAHTKPRPALAAATTiitcPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGT 2001
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAA----PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2002 SFPPQEPRHSPQVKMAPTSSPAEPhcwpaEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASEtqpLSSPPTAASSKAPs 2081
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRP-----VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE---FASPAPAQPDAAP- 518
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 578837046 2082 SGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPP 2129
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1889-2109 |
2.75e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1889 GAAAQRQASGDTPTTPKHPKDSREnfFPVTVVPTAPDPVPADSVQRPSDahtkprPALAAATtiitcPPSASASTLDQSK 1968
Cdd:PHA03307 76 GTEAPANESRSTPTWSLSTLAPAS--PAREGSPTPPGPSSPDPPPPTPP------PASPPPS-----PAPDLSEMLRPVG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1969 DPGPPRPHRPEATPSMASLGPEGEE-------LARVAEGTSFPPQEPRHSPQVKMAP---TSSPAEPHCWPAEAALGTGA 2038
Cdd:PHA03307 143 SPGPPPAASPPAAGASPAAVASDAAssrqaalPLSSPEETARAPSSPPAEPPPSTPPaaaSPRPPRRSSPISASASSPAP 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2039 EPTCSQEGKLR--------PEPRRDGEAQE-------AASETQP----LSSPPTAASSKAPSSGSAQPPEGHPGKPEPSR 2099
Cdd:PHA03307 223 APGRSAADDAGasssdsssSESSGCGWGPEnecplprPAPITLPtriwEASGWNGPSSRPGPASSSSSPRERSPSPSPSS 302
|
250
....*....|
gi 578837046 2100 AKSRPLPNMP 2109
Cdd:PHA03307 303 PGSGPAPSSP 312
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
38-188 |
3.34e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 38 ALYHKALDLQKHDRFEESAKAYHELLEASLLREAVSSGDEKEGLKHPGLILKYSTYKNLAQLAAQREDLETAMEFYLEAV 117
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578837046 118 MLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1932-2137 |
3.88e-06 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 52.46 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1932 VQRPSDAHTKPRPALAAATTIITCPPSASASTLD-QSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsFPPQEPrh 2010
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPpQGSPATSQPPNQTQSTAAPHTLIQQTPTL--------HPQRLP-- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2011 SPQVKMAPTSSPAEPHCWPAEAAlgtgAEPTCSQEGKLRPEPRRDGEAQ-EAASETQPLSSPPTAASSKAPSSGSAQ--- 2086
Cdd:pfam03154 244 SPHPPLQPMTQPPPPSQVSPQPL----PQPSLHGQMPPMPHSLQTGPSHmQHPVPPQPFPLTPQSSQSQVPPGPSPAapg 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2087 ---------PPEGHPGKPEPSRakSRPLPNMPkLVIPSAAtkfPPEITVTPPTPTLLSPK 2137
Cdd:pfam03154 320 qsqqrihtpPSQSQLQSQQPPR--EQPLPPAP-LSMPHIK---PPPTTPIPQLPNPQSHK 373
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1889-2151 |
5.04e-06 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 52.08 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1889 GAAAQRQASGDTPTTPKHPKDSRENffpvtvvPTAPDPVPADSVQRPSdahTKPRPALAAATTIiTCPPSASASTLDQSK 1968
Cdd:pfam03154 319 GQSQQRIHTPPSQSQLQSQQPPREQ-------PLPPAPLSMPHIKPPP---TTPIPQLPNPQSH-KHPPHLSGPSPFQMN 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1969 DPGPPRP-----------HRPEATPSMASLGPEGEELARvaegtsfPPQEPRHSPQVKMAPTSSPAEPHcwpaeaalGTG 2037
Cdd:pfam03154 388 SNLPPPPalkplsslsthHPPSAHPPPLQLMPQSQQLPP-------PPAQPPVLTQSQSLPPPAASHPP--------TSG 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2038 AEPTCSQEgklrPEPRRDGEAQEAASETQPlSSPPTAASSKAPSSgsaQPPEghpgkpEPSRAKSRPLPNMPKLVIPSAA 2117
Cdd:pfam03154 453 LHQVPSQS----PFPQHPFVPGGPPPITPP-SGPPTSTSSAMPGI---QPPS------SASVSSSGPVPAAVSCPLPPVQ 518
|
250 260 270
....*....|....*....|....*....|....*....
gi 578837046 2118 TKFPP-----EITVTPPTPTLLSPKGSISEETKQKLKSA 2151
Cdd:pfam03154 519 IKEEAldeaeEPESPPPPPRSPSPEPTVVNTPSHASQSA 557
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
99-188 |
5.13e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 5.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 99 LAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARhAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCL 178
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 578837046 179 YFICKALEKD 188
Cdd:COG3063 80 AYLERALELD 89
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1895-2140 |
9.40e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.21 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1895 QASGDTPTTPKHPKDSrenffPVTVVP----TAPDPVPADSVQRPSDAHTKPRPaLAAATTIITCP-------PSASAST 1963
Cdd:PHA03379 407 KASEPTYGTPRPPVEK-----PRPEVPqsleTATSHGSAQVPEPPPVHDLEPGP-LHDQHSMAPCPvaqlppgPLQDLEP 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1964 LDQskDPGPPRPHRPEATPSMASLGP---EGEELARVAEGTSFPPQEPRHSP-QVKMAPTSSPAEPHC-WPAEAALGTGA 2038
Cdd:PHA03379 481 GDQ--LPGVVQDGRPACAPVPAPAGPivrPWEASLSQVPGVAFAPVMPQPMPvEPVPVPTVALERPVCpAPPLIAMQGPG 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2039 EPTCSQEGKLR---------------PEPRRDGEAQ---EAASETQPLSSPP---TAASSKAPSSGSAQPPEG-HPGKPE 2096
Cdd:PHA03379 559 ETSGIVRVRERwrpapwtpnpprspsQMSVRDRLARlraEAQPYQASVEVQPpqlTQVSPQQPMEYPLEPEQQmFPGSPF 638
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 578837046 2097 PSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI 2140
Cdd:PHA03379 639 SQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPV 682
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
29-174 |
1.66e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 29 KEAQEAEAFALYHKALDLQKHDRF-----EESAKAYHELLEASLLREAVSSGDEK--EGLKHPGLIlkySTYKNLAQLAA 101
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFaavlaLAIALADLALALAAAALAAAALAAERidRALALPDLA---QLYYERGVAYD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578837046 102 QREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4785 85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1890-2143 |
1.76e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.17 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTT-PKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSasastldqsk 1968
Cdd:PHA03307 60 AACDRFEPPTGPPPgPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPS---------- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1969 dPGPPRPH-----RPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAAlGTGAEPTCs 2043
Cdd:PHA03307 130 -PAPDLSEmlrpvGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP-PAAASPRP- 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2044 qegklrpePRRDGEAQEAASETQPlSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPpe 2123
Cdd:PHA03307 207 --------PRRSSPISASASSPAP-APGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGW-- 275
|
250 260
....*....|....*....|
gi 578837046 2124 iTVTPPTPTLLSPKGSISEE 2143
Cdd:PHA03307 276 -NGPSSRPGPASSSSSPRER 294
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
95-174 |
2.35e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 95 NLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1917-2133 |
2.71e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1917 VTVVPtAPDPVPADSVQRPSDAHTKPRPALAAATtiitcPPSASASTlDQSKDPGPPRPHRPEATPSMASLGPEGEELAR 1996
Cdd:PRK07764 584 VEAVV-GPAPGAAGGEGPPAPASSGPPEEAARPA-----APAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1997 VAEGTSFPPQEPRHSPQVKMAPTSSPAEPhcwpAEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASETQplsSPPTAAS 2076
Cdd:PRK07764 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAP----APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPP---QAAQGAS 729
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 578837046 2077 SKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTL 2133
Cdd:PRK07764 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1890-2062 |
3.08e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPaDSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1969
Cdd:PRK07764 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP-DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1970 PGPPRPHRP------EATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2043
Cdd:PRK07764 701 PAPAPAATPpagqadDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
170 180
....*....|....*....|..
gi 578837046 2044 QEGKLRPEPRR---DGEAQEAA 2062
Cdd:PRK07764 781 EEEEMAEDDAPsmdDEDRRDAE 802
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1890-2109 |
3.90e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.08 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1890 AAAQRQASGDTPTTPKHPKdsrenffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 1969
Cdd:PRK07003 395 AVPAVTAVTGAAGAALAPK-------AAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1970 PGPPRPHRPEATPSMASLGPEGEELA--------------RVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC-WPAEAAL 2034
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPDAAFEPApraaapsaatpaavPDARAPAAASREDAPAAAAPPAPEARPPTPAAaAPAARAG 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2035 GTGAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSK---------APSSGSAQPPEghPGKPEPSRAKSR-- 2103
Cdd:PRK07003 548 GAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRvavqvptprARAATGDAPPN--GAARAEQAAESRga 625
|
....*...
gi 578837046 2104 --PLPNMP 2109
Cdd:PRK07003 626 ppPWEDIP 633
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
1916-2022 |
4.12e-05 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 47.93 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1916 PVTVVPTAPDP-VPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR--PEAT------PSMAS 1986
Cdd:PHA02682 76 PSGQSPLAPSPaCAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPacPPSTrqcppaPPLPT 155
|
90 100 110
....*....|....*....|....*....|....*..
gi 578837046 1987 LGPEGEELARVAEGTSFPPQEPRHS-PQVKMAPTSSP 2022
Cdd:PHA02682 156 PKPAPAAKPIFLHNQLPPPDYPAAScPTIETAPAASP 192
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1916-2104 |
5.07e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1916 PVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA-----TTIITCPPSASASTLDQSKDPGPpRPHRPEATPSMASLGPE 1990
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGaaacdRFEPPTGPPPGPGTEAPANESRS-TPTWSLSTLAPASPARE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1991 GEELARVAEGTSFPPQ-EPRHSPqvkmAPTSSPAEPHCWPAEAALGTGAEPtcsqegklRPEPRRDGEAQEAASETQPLS 2069
Cdd:PHA03307 104 GSPTPPGPSSPDPPPPtPPPASP----PPSPAPDLSEMLRPVGSPGPPPAA--------SPPAAGASPAAVASDAASSRQ 171
|
170 180 190
....*....|....*....|....*....|....*
gi 578837046 2070 SPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP 2104
Cdd:PHA03307 172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
1956-2169 |
5.34e-05 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 48.38 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1956 PPSASASTldQSKDPGPPRPHRPEATPSMASLGPEGEELAR---VAEGTSF----PPQEPRHSPQVKMAPTSSPAEPHCW 2028
Cdd:PLN03209 329 PPKESDAA--DGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVprpLSPYTAYedlkPPTSPIPTPPSSSPASSKSVDAVAK 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2029 PAEAALGTGAEPTCS-QEGKLRPEPR---RDGEAQEAASETQPLSSP-PTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR 2103
Cdd:PLN03209 407 PAEPDVVPSPGSASNvPEVEPAQVEAkktRPLSPYARYEDLKPPTSPsPTAPTGVSPSVSSTSSVPAVPDTAPATAATDA 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837046 2104 PLPNMPKlviPSAATKFPPEITVTPPT-PTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQP 2169
Cdd:PLN03209 487 AAPPPAN---MRPLSPYAVYDDLKPPTsPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQP 550
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1-155 |
5.98e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1 MIRIAALNASSTIEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKhdRFEESAKAYHELLEAsllreavssgdekeg 80
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG--DFEESLALLEQALQL--------------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578837046 81 lkHPGlilKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNP 155
Cdd:COG5010 84 --DPN---NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1851-2131 |
6.20e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 6.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1851 RVERIMSETYMLIKQHLPV--KVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvp 1928
Cdd:NF033839 229 QIVALIKELDELKKQALSEidNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP-- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1929 adsvqrpsdaHTKPRPALAAAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEP 2008
Cdd:NF033839 298 ----------GMQPSPQPEKK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2009 RHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTcsqegklRPEPRRDGEAQEAASETQPlsSPPTAASSKAPSSGSAQP- 2087
Cdd:NF033839 349 TPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPE-------TPKPEVKPQPEKPKPEVKP--QPEKPKPEVKPQPEKPKPe 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 578837046 2088 --PEGHPGKPE--PSRAKS----RPLPNMPKLVIPSAATKFPPEITVTPPTP 2131
Cdd:NF033839 420 vkPQPEKPKPEvkPQPEKPkpevKPQPEKPKPEVKPQPETPKPEVKPQPEKP 471
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1901-2172 |
8.25e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1901 PTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAAttiitcPPSASASTLDQSKDPGPPRPHRPEA 1980
Cdd:PHA03378 676 PSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRA------RPPAAAPGRARPPAAAPGRARPPAA 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1981 TPSMA---SLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPA---EPHCWPAEAALGTGAEPTCSQEGKLRPEPRR 2054
Cdd:PHA03378 750 APGRArppAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTpqpPPQAGPTSMQLMPRAAPGQQGPTKQILRQLL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2055 DGEAQEA-ASETQPLSSPPTAASSKAPSSGSA------QPPEGHPGKPEPSRAKSRplPNMPKLVIPSAATKFPPEIT-- 2125
Cdd:PHA03378 830 TGGVKRGrPSLKKPAALERQAAAGPTPSPGSGtsdkivQAPVFYPPVLQPIQVMRQ--LGSVRAAAASTVTQAPTEYTge 907
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 578837046 2126 ---VTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLC---QPALE 2172
Cdd:PHA03378 908 rrgVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSFSVIWENVSqgqQQTLE 960
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
1969-2109 |
1.70e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.30 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1969 DPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC------WPAEAALGTGAEPTC 2042
Cdd:NF040712 189 DPDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragveQPEDEPVGPGAAPAA 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837046 2043 SQEGKLRPEPRRdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMP 2109
Cdd:NF040712 269 EPDEATRDAGEP--PAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRrRRASVP 334
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
1914-2137 |
2.32e-04 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 46.10 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1914 FFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEgee 1993
Cdd:PHA03291 203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST--TIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE--- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1994 larvaegtsfppqEPRHspQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRdgeaqeaASETQPLSSPPT 2073
Cdd:PHA03291 278 -------------ASRY--ELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPAR-------IYRPPSPVAPSI 335
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837046 2074 AASSKAPSSGSAQPPEGHPGKPePSRAKSRPLPN-MPKLVIPSAATKFP--PEITVTPPTPTLLSPK 2137
Cdd:PHA03291 336 SAVNEAALARLGDELKRHPPES-PRRSKRRSSQTmVPSLTAISEESEAPavVELSRSPRRPGGPTAR 401
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1979-2136 |
2.99e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1979 EATPSMASLGPEGEELARVAEGTSFPPqeprhspqvkmAPTSSPAEPHCWPAEAAlgtGAEPTCSQEGKLRPEPRRDGEA 2058
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAP-----------APAAPPAAPAAAPAAAA---AARAVAAAPARRSPAPEALAAA 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578837046 2059 QEAASETQPLSSPPTAASSKAPSsgSAQPPEGHPGKPEPSRAKSRPLPNMPKLViPSAATKFPPEITVTPPTPTLLSP 2136
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPA--AAARPAAAGPRPVAAAAAAAPARAAPAAA-PAPADDDPPPWEELPPEFASPAP 511
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1897-2106 |
3.30e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1897 SGDTPTTPKHPK-DSRENFFPVT--VVPTAPDPVPADSVQRPSDAHTkPRPALAAATTIITCPpsasasTLDQSKDPGPp 1973
Cdd:PRK10263 295 SGNRATQPEYDEyDPLLNGAPITepVAVAAAATTATQSWAAPVEPVT-QTPPVASVDVPPAQP------TVAWQPVPGP- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1974 rpHRPEatPSMASlGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPR 2053
Cdd:PRK10263 367 --QTGE--PVIAP-APEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 578837046 2054 RDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLP 2106
Cdd:PRK10263 442 VAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEP 494
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1934-2160 |
4.02e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.64 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1934 RPSDAHTKPRPALAAATTIITCPPSASASTldqskdPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEP----R 2009
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPA------AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaaR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2010 HSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQEgkLRPEPRrdgeaqeAASETQPLSSPPTAAsskAPSSGSAQPPE 2089
Cdd:PRK12323 438 QASARGPGGAPAPA-----PAPAAAPAAAARPAAAG--PRPVAA-------AAAAAPARAAPAAAP---APADDDPPPWE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2090 GHPGK-PEPSRAKSRPLPNM--------PKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAAN 2160
Cdd:PRK12323 501 ELPPEfASPAPAQPDAAPAGwvaesipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
1907-2047 |
4.63e-04 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 44.62 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1907 PKDSRENFFPVTVVPTAPDPVPAD-SVQRPSDAHTKPRPALAAAT----------TIITCPPSASASTLDQSKDPGPPRP 1975
Cdd:PHA03381 11 PHGTDEVEADVYYDFISPDASPARvSFEEPADRARRGAGQARGRSqaerrfhhydEARADYPYYTGSSSEDERPADPRPS 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837046 1976 HRPEATPSM----ASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTCSQEGK 2047
Cdd:PHA03381 91 RRPHAQPEAsgpgPARGARGPAGSRGRGRRAESP-SPRDPPNPKGASAPRGRKSAC-ADSAALLDAPAPAAPKRQK 164
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-158 |
6.75e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 6.75e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578837046 92 TYKNLAQLAAQREDLETAMEFyLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHW 158
Cdd:COG3063 28 ALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1925-2136 |
7.27e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1925 DPVPADSV-QRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGP-------------- 1989
Cdd:PHA03247 2452 DPFFARTIlGAPFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPailpdepvgepvhp 2531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1990 ------EG-EELARVAEGTSFPPQEPRHSPQV--KMAPTSSPAePHcwPAEAALGTGAE----PTCSQEGKLRPEPRRDG 2056
Cdd:PHA03247 2532 rmltwiRGlEELASDDAGDPPPPLPPAAPPAApdRSVPPPRPA-PR--PSEPAVTSRARrpdaPPQSARPRAPVDDRGDP 2608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2057 EAQEAASETQPLSSPPTAASSkAPSSGSAQPPEGHP-GKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTP--PTPTL 2133
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPP-SPSPAANEPDPHPPpTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPqrPRRRA 2687
|
...
gi 578837046 2134 LSP 2136
Cdd:PHA03247 2688 ARP 2690
|
|
| PHA03325 |
PHA03325 |
nuclear-egress-membrane-like protein; Provisional |
1959-2128 |
9.07e-04 |
|
nuclear-egress-membrane-like protein; Provisional
Pssm-ID: 223044 Cd Length: 418 Bit Score: 44.10 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1959 ASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ-----VKMAPTSSPAEPhcwPAEAA 2033
Cdd:PHA03325 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPppvrrPRVKHPEAGKEE---PDGAR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2034 LGTGAEPTCSQEGKLRPeprrdgeAQEAASETQPLSSPPTAASSKApSSGSAQPPEGHPGKPEPSRAKSRPLPnmpklvi 2113
Cdd:PHA03325 336 NAEAKEPAQPATSTSSK-------GSSSAQNKDSGSTGPGSSLAAA-SSFLEDDDFGSPPLDLTTSLRHMPSP------- 400
|
170
....*....|....*
gi 578837046 2114 PSAATKFPPEITVTP 2128
Cdd:PHA03325 401 SVTSAPEPPSIPLTY 415
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1970-2107 |
1.05e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1970 PGPPRPHRPEATPSMASLGPEGEelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPtcsqegklr 2049
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPA-----------AAAAPAPAAAPQPAPAPAPAPAPP-SPAGNAPAGGAP--------- 454
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 578837046 2050 pePRRDGEAQEAASETQPLSSPPTAASSkAPSSGSAQPPEGHPGKPEPSRAKSRPLPN 2107
Cdd:PRK07764 455 --SPPPAAAPSAQPAPAPAAAPEPTAAP-APAPPAAPAPAAAPAAPAAPAAPAGADDA 509
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
1904-2136 |
1.10e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 44.15 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1904 PKHPkDSRENFFPVTVVPTAPD-PVPADSVQRPSDAHTKPRPA--------LAAATTIITCPPS---ASASTLDQSKDPG 1971
Cdd:PLN03209 330 PKES-DAADGPKPVPTKPVTPEaPSPPIEEEPPQPKAVVPRPLspytayedLKPPTSPIPTPPSsspASSKSVDAVAKPA 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1972 PPRPH-RPEATPSMASLGPEGEELARVAEGTSF-------PPQEPRHSPQVKMAPTSSPAephcwPAEAALGTGAEPTCS 2043
Cdd:PLN03209 409 EPDVVpSPGSASNVPEVEPAQVEAKKTRPLSPYaryedlkPPTSPSPTAPTGVSPSVSST-----SSVPAVPDTAPATAA 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2044 QEGKLRPEPRrdgeaqeaaseTQPLSSPPTAASSKAPSSGSaqppeghPGKPEPSRAKSRPlPNMPKLVIPSAATKFPPE 2123
Cdd:PLN03209 484 TDAAAPPPAN-----------MRPLSPYAVYDDLKPPTSPS-------PAAPVGKVAPSST-NEVVKVGNSAPPTALADE 544
|
250
....*....|...
gi 578837046 2124 ITVTPPTPTLLSP 2136
Cdd:PLN03209 545 QHHAQPKPRPLSP 557
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1891-2133 |
1.20e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1891 AAQRQASGDTPT-TPKHPKDSRENFFPV---------TVVPTAPDPVPADSVQRPSDAHTKPRpalaAATTIITCP-PSA 1959
Cdd:PHA03247 270 ETARGATGPPPPpEAAAPNGAAAPPDGVwgaalagapLALPAPPDPPPPAPAGDAEEEDDEDG----AMEVVSPLPrPRQ 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1960 SASTldqskdpGPPRPHRPEATP--SMASLGpEGEELARVAEgtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTG 2037
Cdd:PHA03247 346 HYPL-------GFPKRRRPTWTPpsSLEDLS-AGRHHPKRAS----LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2038 AEPTCSQEGKLRPEPrrdgeaqeaasetqPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKlVIPSAA 2117
Cdd:PHA03247 414 SVPTPAPTPVPASAP--------------PPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRK-ALDALR 478
|
250
....*....|....*.
gi 578837046 2118 TKFPPEitvtPPTPTL 2133
Cdd:PHA03247 479 ERRPPE----PPGADL 490
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1868-2105 |
1.50e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1868 PVKVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPkhpkdsrenffpvtvvptAPDPVPADSVQRPSDAHTKPRPALA 1947
Cdd:PRK12323 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP------------------APEALAAARQASARGPGGAPAPAPA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1948 -AATTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLG-PEGEELarvaegtsfpPQEPrhspqvkmaPTSSPAEP 2025
Cdd:PRK12323 454 pAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDpPPWEEL----------PPEF---------ASPAPAQP 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2026 HCWPAEAALGTGAEPTCSQEGKLRPEPRrdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKpEPSRAKSRPL 2105
Cdd:PRK12323 515 DAAPAGWVAESIPDPATADPDDAFETLA---PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD-WPALAARLPV 590
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
1889-2131 |
1.52e-03 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1889 GAAAQRQASGDTPTTPKH----PKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiitcpPSASASTL 1964
Cdd:COG5180 152 AALLQRSDPILAKDPDGDsastLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLT-----GGADHPRP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1965 DQSKDPGPPRPHRPEATPSMASLGPEGEEL-------ARVAEGTSFPPQEPRHSPQ-------VKMAPTSSPAEPHCWPA 2030
Cdd:COG5180 227 EAASSPKVDPPSTSEARSRPATVDAQPEMRppadakeRRRAAIGDTPAAEPPGLPVleagsepQSDAPEAETARPIDVKG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2031 EAALGTGAEPTCSQEGKLRPEPRRDGEAQEaasetQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKS------RP 2104
Cdd:COG5180 307 VASAPPATRPVRPPGGARDPGTPRPGQPTE-----RPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRpgssggDG 381
|
250 260
....*....|....*....|....*..
gi 578837046 2105 LPNMPKLVIPSAATKFPPeiTVTPPTP 2131
Cdd:COG5180 382 APFQPPNGAPQPGLGRRG--APGPPMG 406
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1970-2088 |
1.71e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1970 PGPPRPHRPEATPSMASLGPEgeelarvAEGTSFPPQEPRHSPQVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQEGKLR 2049
Cdd:PRK07764 394 PAAAAPSAAAAAPAAAPAPAA-------AAPAAAAAPAPAAAPQPAPAPAPAPAPP---SPAGNAPAGGAPSPPPAAAPS 463
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 578837046 2050 PEPRR---DGEAQEAASETQPLSSPPTAASSKAPSSGSAQPP 2088
Cdd:PRK07764 464 AQPAPapaAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
1991-2101 |
1.95e-03 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 42.80 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1991 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQEGKlrpEPRRDGEAQEAASETQPLSS 2070
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAK---EHGIDLSAVPGTGVTGRVTK 142
|
90 100 110
....*....|....*....|....*....|.
gi 578837046 2071 PPTAASSKAPSsgSAQPPEGHPGKPEPSRAK 2101
Cdd:TIGR01347 143 EDIIKKTEAPA--SAQPPAAAAAAAAPAAAT 171
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
1928-2162 |
1.98e-03 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 43.14 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1928 PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARvaEGTSFPPQE 2007
Cdd:pfam03546 168 DSESSSEESDSEGEAPPAATQAKPSGKILQVRPASGPAKGAAPAPPQKAGPVATQVKAERSKEDSESSE--ESSDSEEEA 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2008 PRHSPQVKMAPTSSPAEPHCWPAEaalGTGAEPTCSQEGKLR---PEPRRDGEAQEAASetqpLSSPPTAASSKAP---S 2081
Cdd:pfam03546 246 PAAATPAQAKPALKTPQTKASPRK---GTPITPTSAKVPPVRvgtPAPWKAGTVTSPAC----ASSPAVARGAQRPeedS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2082 SGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI-----------SEETKQKLKS 2150
Cdd:pfam03546 319 SSSEESESEEETAPAAAVGQAKSVGKGLQGKAASAPTKGPSGQGTAPVPPGKTGPAVAQvkaeaqedsesSEEESDSEEA 398
|
250
....*....|..
gi 578837046 2151 AILSAQSAANVR 2162
Cdd:pfam03546 399 AATPAQVKASGK 410
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
36-119 |
2.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 36 AFALYHKALDLQKHDRFEESAKAYHELLEaslLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70
|
....
gi 578837046 116 AVML 119
Cdd:pfam13424 71 ALAL 74
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
1894-2138 |
2.10e-03 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 43.41 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1894 RQASGDTPTTPKHPKDSRENFFPVT-----------VVPTAPDPVPAdSVQRPSDAHTK---PRPAlaaattiitcPPSA 1959
Cdd:PHA03321 447 RARPGSTPACARRARAQRARDAGPEyvdplgalrrlPAGAAPPPEPA-AAPSPATYYTRmggGPPR----------LPPR 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1960 SASTLDQSKDPGPPRPHRPEATPSmASLGPEGEELARVAEGTSFPPQEPRHSPqvkmAPTSSPaephcwPAEaALGTGAE 2039
Cdd:PHA03321 516 NRATETLRPDWGPPAAAPPEQMED-PYLEPDDDRFDRRDGAAAAATSHPREAP----APDDDP------IYE-GVSDSEE 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2040 PTCSQegklRPEPR----RDGEAQEAASETQPLSSPptaassKAPSSGSAQPPEGHPGKP--EPSRAKSRPLPnmpklvi 2113
Cdd:PHA03321 584 PVYEE----IPTPRvyqnPLPRPMEGAGEPPDLDAP------TSPWVEEENPIYGWGDSPlfSPPPAARFPPP------- 646
|
250 260
....*....|....*....|....*
gi 578837046 2114 PSAATKFPPEITVTPPTPTLLSPKG 2138
Cdd:PHA03321 647 DPALSPEPPALPAHRPRPGALAPDG 671
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
48-151 |
3.55e-03 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 41.03 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 48 KHDRFEESAKAYHELLEAsllreaVSSGDEKEGL--------KHPGlilkySTYKNLAQL-----AAQREDLETAMEfYL 114
Cdd:pfam09976 32 QRSQAEEASALYQQLLEA------VAAGDAAKAQaaaaqlkdEYGG-----TGYAALAALllakaAVEAGDLAAAKA-QL 99
|
90 100 110
....*....|....*....|....*....|....*...
gi 578837046 115 EAVMLDSTDVNLwykiGHVA-LRLIRIPLARHAFEEGL 151
Cdd:pfam09976 100 EWVADNAKDEAL----KALArLRLARVLLAQGKYDEAL 133
|
|
| PHA03369 |
PHA03369 |
capsid maturational protease; Provisional |
1983-2170 |
3.87e-03 |
|
capsid maturational protease; Provisional
Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 42.29 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1983 SMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALgTGAEPTCSQEGKLRPEPRRDGEAQEAA 2062
Cdd:PHA03369 349 KTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPM-TAYPPVPQFCGDPGLVSPYNPQSPGTS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2063 SETQPLSS-PPT-AASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLP-NMPKLVIPSAATKFPPEITVTPPTPTLLSPKGS 2139
Cdd:PHA03369 428 YGPEPVGPvPPQpTNPYVMPISMANMVYPGHPQEHGHERKRKRGGElKEELIETLKLVKKLKEEQESLAKELEATAHKSE 507
|
170 180 190
....*....|....*....|....*....|.
gi 578837046 2140 ISEETKQKLKSAILSAQSAANVRKESLCQPA 2170
Cdd:PHA03369 508 IKKIAESEFKNAGAKTAAANIEPNCSADAAA 538
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
1917-2131 |
4.31e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 42.28 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1917 VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKdpgpprPHRPEATPSMASLGpegeelAR 1996
Cdd:PRK12727 62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMA------LRQPVSVPRQAPAA------AP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1997 VAEGTSFPPQEPRHSPQVKMapTSSPAEPHCWPAEAALGTGAEPTCSQegklRPEPRRDGEAQEAASETqPLSSPPTAAS 2076
Cdd:PRK12727 130 VRAASIPSPAAQALAHAAAV--RTAPRQEHALSAVPEQLFADFLTTAP----VPRAPVQAPVVAAPAPV-PAIAAALAAH 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 578837046 2077 SKAPSSGSAQPPEGHPGKPEPSrAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2131
Cdd:PRK12727 203 AAYAQDDDEQLDDDGFDLDDAL-PQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
34-174 |
4.32e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 34 AEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLIlkySTYKNLAQLAAQREDLETAMEFY 113
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALE-----------------LDPETV---EAHLALGNLYRRRGEYDRAIRIH 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578837046 114 LEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG2956 66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
1976-2119 |
4.43e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 40.06 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1976 HRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRD 2055
Cdd:cd21975 19 HGVRPDPEGAGLAAGLDVRATREVAKGPGPPGPAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578837046 2056 GEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGkPEPSRAKSRPLPNMPKLVIPSAATK 2119
Cdd:cd21975 99 DSDVAPASGAAASTSPESSSDAASSPSPLSLLHPGEAG-LEPERPRPRVRRGVRRRGVTPAAKR 161
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1892-2024 |
4.44e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.07 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1892 AQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA---------- 1961
Cdd:PRK14971 360 AQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVdppaavpvnp 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578837046 1962 -STLDQSKDPGPPRPHRPEATPSMASLGPegeelarvaeGTSFPPQEPRHSPQ--VKMAPTSSPAE 2024
Cdd:PRK14971 440 pSTAPQAVRPAQFKEEKKIPVSKVSSLGP----------STLRPIQEKAEQATgnIKEAPTGTQKE 495
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1974-2165 |
9.64e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 9.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 1974 RPHRPEATPSM---ASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEgklRP 2050
Cdd:PRK07994 360 HPAAPLPEPEVppqSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQG---AT 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578837046 2051 EPRRDGEAqeAASETQPLSSPPTAASSKAPssgSAQPPEGHPGKPEPSRAKSR-PLPNMPKLVIPSAATKFPPEITVTPP 2129
Cdd:PRK07994 437 KAKKSEPA--AASRARPVNSALERLASVRP---APSALEKAPAKKEAYRWKATnPVEVKKEPVATPKALKKALEHEKTPE 511
|
170 180 190
....*....|....*....|....*....|....*....
gi 578837046 2130 TPTLLSPKGSISE---ETKQKLKSAILSAQSAANVRKES 2165
Cdd:PRK07994 512 LAAKLAAEAIERDpwaALVSQLGLPGLVEQLALNAWKEE 550
|
|
| |
