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Conserved domains on  [gi|585638553|ref|XP_006879499|]
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PREDICTED: glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 [Elephantulus edwardii]

Protein Classification

Ly-6/uPAR domain-containing protein( domain architecture ID 10061478)

LU (Ly-6 antigen/uPA receptor-like) domain-containing protein similar to GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TFP_LU_ECD_GPIHBP1 cd23575
extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density ...
99-181 5.45e-34

extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPI-HBP1) and similar proteins; GPI-HBP1 (also called GPI-anchored HDL-binding protein 1, or high density lipoprotein-binding protein 1) is an endothelial cell transporter for lipoprotein lipase. It mediates the transport of lipoprotein lipase LPL from the basolateral to the apical surface of endothelial cells in capillaries and anchors LPL on the surface of endothelial cells in the lumen of blood capillaries. GPI-HBP1 protects LPL against loss of activity, and against ANGPTL4-mediated unfolding. Thereby, it plays an important role in lipolytic processing of chylomicrons by LPL, triglyceride metabolism and lipid homeostasis. GPI-HBP1 binds chylomicrons and phospholipid particles that contain APOA5. It also binds high-density lipoprotein (HDL) and plays a role in the uptake of lipids from HDL. GPI-HBP1 contains an extracellular domain (ECD), which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


:

Pssm-ID: 467105  Cd Length: 83  Bit Score: 118.20  E-value: 5.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553  99 AQLRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCADTCQPIIRTFVGTRLTVSCCNTALCNRP 178
Cdd:cd23575    1 HSLKCYTCVSAHSNSDCLTETNCSSSDTYCKTLVASASGGSGSLTTITKWCASSCTPSTRTVEGTKVTVSCCQTDLCNVS 80

                 ...
gi 585638553 179 PWQ 181
Cdd:cd23575   81 GAQ 83
 
Name Accession Description Interval E-value
TFP_LU_ECD_GPIHBP1 cd23575
extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density ...
99-181 5.45e-34

extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPI-HBP1) and similar proteins; GPI-HBP1 (also called GPI-anchored HDL-binding protein 1, or high density lipoprotein-binding protein 1) is an endothelial cell transporter for lipoprotein lipase. It mediates the transport of lipoprotein lipase LPL from the basolateral to the apical surface of endothelial cells in capillaries and anchors LPL on the surface of endothelial cells in the lumen of blood capillaries. GPI-HBP1 protects LPL against loss of activity, and against ANGPTL4-mediated unfolding. Thereby, it plays an important role in lipolytic processing of chylomicrons by LPL, triglyceride metabolism and lipid homeostasis. GPI-HBP1 binds chylomicrons and phospholipid particles that contain APOA5. It also binds high-density lipoprotein (HDL) and plays a role in the uptake of lipids from HDL. GPI-HBP1 contains an extracellular domain (ECD), which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467105  Cd Length: 83  Bit Score: 118.20  E-value: 5.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553  99 AQLRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCADTCQPIIRTFVGTRLTVSCCNTALCNRP 178
Cdd:cd23575    1 HSLKCYTCVSAHSNSDCLTETNCSSSDTYCKTLVASASGGSGSLTTITKWCASSCTPSTRTVEGTKVTVSCCQTDLCNVS 80

                 ...
gi 585638553 179 PWQ 181
Cdd:cd23575   81 GAQ 83
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
101-179 3.57e-06

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 44.06  E-value: 3.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553   101 LRCYFCKTVhKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSG-WCADTCQ--PIIRTFVG-TRLTVSCCNTALCN 176
Cdd:smart00134   1 LQCYSCTGN-PDSSCSSEEECRSPDDVCLTVVAEVISDSRGSVVYKGcATSPICPgsHGYEINLTiAFLKVSCCQTDLCN 79

                   ...
gi 585638553   177 RPP 179
Cdd:smart00134  80 AAG 82
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
103-176 1.12e-03

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 37.13  E-value: 1.12e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 585638553  103 CYFCKTVHkEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCA-DTCQPIIRTFV---GTRLTVSCCNTALCN 176
Cdd:pfam00021   1 CYSCLGVS-NEDCLSEVTCPLSDGQCVTTTLELPEGNLRGTVVSKGCArSSCPRLLSDFInggIISVSESCCQSDLCN 77
 
Name Accession Description Interval E-value
TFP_LU_ECD_GPIHBP1 cd23575
extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density ...
99-181 5.45e-34

extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPI-HBP1) and similar proteins; GPI-HBP1 (also called GPI-anchored HDL-binding protein 1, or high density lipoprotein-binding protein 1) is an endothelial cell transporter for lipoprotein lipase. It mediates the transport of lipoprotein lipase LPL from the basolateral to the apical surface of endothelial cells in capillaries and anchors LPL on the surface of endothelial cells in the lumen of blood capillaries. GPI-HBP1 protects LPL against loss of activity, and against ANGPTL4-mediated unfolding. Thereby, it plays an important role in lipolytic processing of chylomicrons by LPL, triglyceride metabolism and lipid homeostasis. GPI-HBP1 binds chylomicrons and phospholipid particles that contain APOA5. It also binds high-density lipoprotein (HDL) and plays a role in the uptake of lipids from HDL. GPI-HBP1 contains an extracellular domain (ECD), which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467105  Cd Length: 83  Bit Score: 118.20  E-value: 5.45e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553  99 AQLRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCADTCQPIIRTFVGTRLTVSCCNTALCNRP 178
Cdd:cd23575    1 HSLKCYTCVSAHSNSDCLTETNCSSSDTYCKTLVASASGGSGSLTTITKWCASSCTPSTRTVEGTKVTVSCCQTDLCNVS 80

                 ...
gi 585638553 179 PWQ 181
Cdd:cd23575   81 GAQ 83
TFP_LU_ECD_SLURP1_like cd23560
extracellular domain (ECD) found in the secreted Ly-6/uPAR-related protein 1 (SLURP-1)-like ...
101-176 2.16e-06

extracellular domain (ECD) found in the secreted Ly-6/uPAR-related protein 1 (SLURP-1)-like family; The SLURP-1-like family includes SLURP-1 and Ly6/PLAUR domain-containing protein 2 (LYPD2). SLURP-1 (also called ARS component B, or ARS (component B)-81/S, or anti-neoplastic urinary protein (ANUP)) has an antitumor activity. It was found to be a marker of late differentiation of the skin. It is implicated in maintaining the physiological and structural integrity of the keratinocyte layers of the skin. In vitro SLURP-1 down-regulates keratinocyte proliferation; the function may involve the proposed role as modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits alpha-7-dependent nAChR currents in an allosteric manner. In T cells SLURP-1 may be involved in regulation of intracellular Ca(2+) signaling. It may also have an immunomodulatory function in the cornea. The function may implicate a possible role as a scavenger receptor for PLAU thereby blocking PLAU-dependent functions of PLAUR such as in cell migration and proliferation. LYPD2 is a lymphocyte antigen-6 family protein and shows high sequence similarity with SLURP-1. Members in this family contain an extracellular domain (ECD) that belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467090  Cd Length: 78  Bit Score: 44.74  E-value: 2.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553 101 LRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETE-----SRSLATYsgwCADTCQPIIRTFVGTRLTVSCCNTALC 175
Cdd:cd23560    1 LRCYTCPEPTDSSLCTTIVNCSPNETACKTTLYSVDSGypffgNITVTRG---CASECIPSDPDGIGETHPISCCNTDLC 77

                 .
gi 585638553 176 N 176
Cdd:cd23560   78 N 78
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
101-179 3.57e-06

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 44.06  E-value: 3.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553   101 LRCYFCKTVhKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSG-WCADTCQ--PIIRTFVG-TRLTVSCCNTALCN 176
Cdd:smart00134   1 LQCYSCTGN-PDSSCSSEEECRSPDDVCLTVVAEVISDSRGSVVYKGcATSPICPgsHGYEINLTiAFLKVSCCQTDLCN 79

                   ...
gi 585638553   177 RPP 179
Cdd:smart00134  80 AAG 82
TFP_LU_ECD_LYPD2 cd23620
extracellular domain (ECD) found in Ly6/PLAUR domain-containing protein 2 (LYPD2) and similar ...
101-176 2.09e-05

extracellular domain (ECD) found in Ly6/PLAUR domain-containing protein 2 (LYPD2) and similar proteins; LYPD2 is a lymphocyte antigen-6 family protein. It contains an extracellular domain (ECD) that belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467140  Cd Length: 79  Bit Score: 41.85  E-value: 2.09e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 585638553 101 LRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETESRSL--ATYSGWCADTCQPIIRTFVGTRLTVSCCNTALCN 176
Cdd:cd23620    2 LRCYVCPEPTSASDCVTITTCHTNETMCKTTLYSREIVYPFLgdSTVTKSCASKCEPSDVDGIGQTRPVSCCNTDLCN 79
TFP cd00117
three-fingered protein (TFP) fold found in Ly6/uPAR (LU) and snake toxin superfamily; The LU ...
101-176 9.03e-05

three-fingered protein (TFP) fold found in Ly6/uPAR (LU) and snake toxin superfamily; The LU (also known as Ly-6 antigen/uPA receptor)-like extracellular domain (ECD) occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. It is a structural domain involved in protein-protein interactions, tolerating an unusual degree of variation and binding with high specificity to a broad spectrum of targets. The snake toxin domain is present in short and long neurotoxins, cytotoxins, and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. Both the LU-like ECD and the snake toxin domain belong to three-fingered protein (TFP) fold, which is characterized by containing 70 to 100 amino acids including eight to ten cysteine residues spaced at conserved distances.


Pssm-ID: 467060  Cd Length: 81  Bit Score: 40.16  E-value: 9.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553 101 LRCYFCKTVHKEEPCT---ELQSCGPSQPSCeMVITQSETESRSLATYSgwCADTCQP-----IIRTFVGTRLTVSCCNT 172
Cdd:cd00117    1 LKCYQCNSSNDPNCCNsspTLVTCSSPETFC-RKIVGKVGGGETLVIRG--CATECECgctecCSGTGTSGTTCTSCCDT 77

                 ....
gi 585638553 173 ALCN 176
Cdd:cd00117   78 DLCN 81
TFP_LU_ECD_Ly6H cd23549
extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H ...
101-178 1.04e-04

extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H may act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits alpha-3:beta-4-containing nAChRs maximum response. Ly-6H may play a role in the intracellular trafficking of alpha-7-containing nAChRs and may inhibit their expression at the cell surface. It seems to inhibit alpha-7/CHRNA7 signaling in hippocampal neurons. Ly-6H contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467079  Cd Length: 88  Bit Score: 40.12  E-value: 1.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553 101 LRCYFCKTVHKEEPCTELQsCGPSQPSCEMVITQSETESRSLATYSGWCADTCQPIIRTFVGTRLT-----------VSC 169
Cdd:cd23549    1 LWCQDCTLTTNSSNCTPKP-CQPSDTVCVSVRITDPSSSRKDHSVNKMCATSCDFTKRHFFSDYLMgfinsgilivdVRC 79

                 ....*....
gi 585638553 170 CNTALCNRP 178
Cdd:cd23549   80 CNKDLCNGP 88
TFP_LU_ECD_LYPD1 cd23559
extracellular domain (ECD) found in Ly6/PLAUR domain-containing protein 1 (LYPD1) and similar ...
100-176 6.19e-04

extracellular domain (ECD) found in Ly6/PLAUR domain-containing protein 1 (LYPD1) and similar proteins; LYPD1 (also called putative HeLa tumor suppressor (PHTS)) may act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro LYPD1 increases receptor desensitization and decreases affinity for ACh of alpha-4:beta-2-containing nAChRs. It may play a role in the intracellular trafficking of alpha-4:beta-2 and alpha-7-containing nAChRs and may inhibit their expression at the cell surface. It may be involved in the control of anxiety. LYPD1 also functions as a novel putative tumor suppressor involved in the transformation reversion of HeLaHF cells independently of the p53 pathway. LYPD1 contains an extracellular domain (ECD) that belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467089  Cd Length: 85  Bit Score: 37.98  E-value: 6.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553 100 QLRCYFCKTVHKEEPCTE---LQSCGPSQPSCEMVITQSETES--RSLATYSGWCADTcQPIIRTF----VGTRLTVSCC 170
Cdd:cd23559    1 QIQCYQCETFQLNDDCSSpefIVNCTSVQDMCQKEVMNHSAGImyRKSCAQSAACLIA-SAGYQSFctpgKVGSVCISCC 79

                 ....*.
gi 585638553 171 NTALCN 176
Cdd:cd23559   80 NTPLCN 85
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
103-176 1.12e-03

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 37.13  E-value: 1.12e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 585638553  103 CYFCKTVHkEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCA-DTCQPIIRTFV---GTRLTVSCCNTALCN 176
Cdd:pfam00021   1 CYSCLGVS-NEDCLSEVTCPLSDGQCVTTTLELPEGNLRGTVVSKGCArSSCPRLLSDFInggIISVSESCCQSDLCN 77
TFP_LU_ECD_PSCA cd23573
extracellular domain (ECD) found in prostate stem cell antigen (PSCA) and similar proteins; ...
101-177 1.39e-03

extracellular domain (ECD) found in prostate stem cell antigen (PSCA) and similar proteins; PSCA may be involved in the regulation of cell proliferation. It has a cell-proliferation inhibition activity in vitro. PSCA may also act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits nicotine-induced signaling probably implicating alpha-3:beta-2- or alpha-7-containing nAChRs. PSCA contains an extracellular domain (ECD), which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467103  Cd Length: 78  Bit Score: 36.65  E-value: 1.39e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 585638553 101 LRCYFCKTVHKEEPCTELQSCGPSQPSCEmviTQSETESRSLATYSGWCADTCQPIIRTF-VGTRlTVSCCNTALCNR 177
Cdd:cd23573    3 LQCYTCKAQLSNSNCQTETPCRENAKACK---TDVIRAVGLLKVISKECSSSCTEDYQDYfVGKR-NITCCSTDLCNV 76
TFP_LU_ECD_uPAR_rpt1 cd23556
first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
101-177 2.46e-03

first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the first ECD.


Pssm-ID: 467086  Cd Length: 79  Bit Score: 35.90  E-value: 2.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585638553 101 LRCYFCKTvhkEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCADTCQP--IIRTFVGTR---LTVSCCNTALC 175
Cdd:cd23556    1 LRCYSCKS---NGDCRVEEVCALGQDLCRTTVMTLWEEGEELELVVKGCDVSGKTnaSSSYRTGLNinsLQETVCSSDLC 77

                 ..
gi 585638553 176 NR 177
Cdd:cd23556   78 NQ 79
TFP_LU_ECD_Ly6E cd23543
extracellular domain (ECD) found in lymphocyte antigen 6E (Ly-6E) and similar proteins; Ly-6E ...
101-176 6.66e-03

extracellular domain (ECD) found in lymphocyte antigen 6E (Ly-6E) and similar proteins; Ly-6E (also called retinoic acid-induced gene E protein (RIG-E), or stem cell antigen 2 (SCA-2), or thymic shared antigen 1 (TSA-1)) is a GPI-anchored cell surface protein that regulates T-lymphocytes proliferation, differentiation, and activation. It restricts the entry of human coronaviruses, including SARS-CoV, MERS-CoV and SARS-CoV-2, by interfering with spike protein-mediated membrane fusion. It plays an essential role in placenta formation by acting as the main receptor for syncytin-A (SynA). It may also act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. Ly-6E contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467073  Cd Length: 78  Bit Score: 34.64  E-value: 6.66e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 585638553 101 LRCYFCKTVHKEEPCTELQSCGPSQPSCEMVITQSETESRSLATYSGWCADTCqPIIRTFVG-TRLTVSCCNTALCN 176
Cdd:cd23543    3 LYCYTCENQSSNWNCLKPTKCSDNDKYCVTTVASGGTGSSSGVRITKKCSPKC-PETNVNIGiASVSTSCCQSSLCN 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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