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Conserved domains on  [gi|685351297|ref|XP_009111092|]
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uncharacterized protein LOC103836564 isoform X1 [Brassica rapa]

Protein Classification

DUF4487 domain-containing protein( domain architecture ID 10632792)

DUF4487 domain-containing protein similar to Homo sapiens protein C1orf112

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
DUF4487 pfam14868
Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins ...
257-852 0e+00

Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins in this family are typically between 209 and 938 amino acids in length. There is a conserved WCF sequence motif. There is a single completely conserved residue W that may be functionally important.


:

Pssm-ID: 464352  Cd Length: 579  Bit Score: 550.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  257 VTILNTSWKGVITLLQIDKQTLASKVDVGEIILKLISLIKESLRFSAVAW----SCSVKENISATEAR---RVFLPVKFY 329
Cdd:pfam14868   1 VALLNNTWKFVIKLSQKGKSLLESKLNHGDIILSLCSLLLESLHSCLEAAeqikQSGLQESTSSTEAKlfqRTFKPCRFF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  330 LINAVKVAALFPNQVSMVFKEISLCILMISAFKVSLSQQTHGKYASEVMTDLLEKTTVDLLNALLNAGEITQELRLSLLD 409
Cdd:pfam14868  81 LNNLVHYTKEFPSFLSKSCSELHQLYLQISSKGILFPPSLCAPTASEALSEELEATSLVLLDALLNQLLPFQPFAEAVLD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  410 SLFideqcfptqvcnkqghgsqtepslvdilslsvesaasargLLLARVVLFQAVMRYSSELEEDA-------------- 475
Cdd:pfam14868 161 SLL----------------------------------------LLLPQCLLLLNVLGKSPSQPEEVltlwcdgsqfpeet 200
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  476 -KLAITRKLQWLLDVLTDEKVYTSVLSSQLPMADGSGKT--IVWESMFSALLLSLKTLMITlSSSPAWEELETLLLKNLL 552
Cdd:pfam14868 201 pRLPLLKALFWSLDQCSGERVYSSVLPVQLPGVMGKGQAqvLVWQTLYQHVCVSLCTFMIA-LSPSAFSELERFLLEAVL 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  553 HPHFLCWQIVMELWCFWARHATDVTVANVIDKLCIFMLSMSTSEAPLCPdsvLRRTAKSICFLLTHSPKSLTAQVYKNIS 632
Cdd:pfam14868 280 HPHFLCALLATDVWCFLARYGTAELCAHHVDLLAHLIKSCPSECYQLSH---LRKLLRRLCFLLTPGHQSEFVQVFSPKE 356
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  633 TESrsesapdayLALLLEGFPLNFLPDRMISDAKKQIVAEFFHFIENFtektSNSSRYFVQggpvvALSACLGILKMSIP 712
Cdd:pfam14868 357 VEN---------LLLLWEGFPLQALSDDLRKQVEREIVTLFFGFLEKW----LNGGYKLGE-----STSSSLQSQQVKIS 418
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  713 EIDSR----TLKFGVALIQKLRKSKDEMTRDRYTEI----------------------LSETLSIISRSEQLYTCQEMDN 766
Cdd:pfam14868 419 DIDVKsvntALSFLLAVIQGSGSALDEEQKDSLTELitqlwarmspkqvsshpvlqqtLSLLLSIIANLIQLYEPQEIEQ 498
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  767 VITELQRLFITETDNSQhhlhkLKPSLALFLSGLSNYEMSETETCPKSRAVWELYHLLLRKRHWALVHHAVTAFGYFCAR 846
Cdd:pfam14868 499 VITELTSLFILEPPDSD-----LKLALLDFLSSLGKLFIPEDIQCQVLPALWELFHVLLAERHWLLVQHALEAFGYFAER 573

                  ....*.
gi 685351297  847 TGCAQL 852
Cdd:pfam14868 574 TSHEQL 579
 
Name Accession Description Interval E-value
DUF4487 pfam14868
Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins ...
257-852 0e+00

Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins in this family are typically between 209 and 938 amino acids in length. There is a conserved WCF sequence motif. There is a single completely conserved residue W that may be functionally important.


Pssm-ID: 464352  Cd Length: 579  Bit Score: 550.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  257 VTILNTSWKGVITLLQIDKQTLASKVDVGEIILKLISLIKESLRFSAVAW----SCSVKENISATEAR---RVFLPVKFY 329
Cdd:pfam14868   1 VALLNNTWKFVIKLSQKGKSLLESKLNHGDIILSLCSLLLESLHSCLEAAeqikQSGLQESTSSTEAKlfqRTFKPCRFF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  330 LINAVKVAALFPNQVSMVFKEISLCILMISAFKVSLSQQTHGKYASEVMTDLLEKTTVDLLNALLNAGEITQELRLSLLD 409
Cdd:pfam14868  81 LNNLVHYTKEFPSFLSKSCSELHQLYLQISSKGILFPPSLCAPTASEALSEELEATSLVLLDALLNQLLPFQPFAEAVLD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  410 SLFideqcfptqvcnkqghgsqtepslvdilslsvesaasargLLLARVVLFQAVMRYSSELEEDA-------------- 475
Cdd:pfam14868 161 SLL----------------------------------------LLLPQCLLLLNVLGKSPSQPEEVltlwcdgsqfpeet 200
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  476 -KLAITRKLQWLLDVLTDEKVYTSVLSSQLPMADGSGKT--IVWESMFSALLLSLKTLMITlSSSPAWEELETLLLKNLL 552
Cdd:pfam14868 201 pRLPLLKALFWSLDQCSGERVYSSVLPVQLPGVMGKGQAqvLVWQTLYQHVCVSLCTFMIA-LSPSAFSELERFLLEAVL 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  553 HPHFLCWQIVMELWCFWARHATDVTVANVIDKLCIFMLSMSTSEAPLCPdsvLRRTAKSICFLLTHSPKSLTAQVYKNIS 632
Cdd:pfam14868 280 HPHFLCALLATDVWCFLARYGTAELCAHHVDLLAHLIKSCPSECYQLSH---LRKLLRRLCFLLTPGHQSEFVQVFSPKE 356
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  633 TESrsesapdayLALLLEGFPLNFLPDRMISDAKKQIVAEFFHFIENFtektSNSSRYFVQggpvvALSACLGILKMSIP 712
Cdd:pfam14868 357 VEN---------LLLLWEGFPLQALSDDLRKQVEREIVTLFFGFLEKW----LNGGYKLGE-----STSSSLQSQQVKIS 418
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  713 EIDSR----TLKFGVALIQKLRKSKDEMTRDRYTEI----------------------LSETLSIISRSEQLYTCQEMDN 766
Cdd:pfam14868 419 DIDVKsvntALSFLLAVIQGSGSALDEEQKDSLTELitqlwarmspkqvsshpvlqqtLSLLLSIIANLIQLYEPQEIEQ 498
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  767 VITELQRLFITETDNSQhhlhkLKPSLALFLSGLSNYEMSETETCPKSRAVWELYHLLLRKRHWALVHHAVTAFGYFCAR 846
Cdd:pfam14868 499 VITELTSLFILEPPDSD-----LKLALLDFLSSLGKLFIPEDIQCQVLPALWELFHVLLAERHWLLVQHALEAFGYFAER 573

                  ....*.
gi 685351297  847 TGCAQL 852
Cdd:pfam14868 574 TSHEQL 579
 
Name Accession Description Interval E-value
DUF4487 pfam14868
Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins ...
257-852 0e+00

Domain of unknown function (DUF4487); This family of proteins is found in eukaryotes. Proteins in this family are typically between 209 and 938 amino acids in length. There is a conserved WCF sequence motif. There is a single completely conserved residue W that may be functionally important.


Pssm-ID: 464352  Cd Length: 579  Bit Score: 550.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  257 VTILNTSWKGVITLLQIDKQTLASKVDVGEIILKLISLIKESLRFSAVAW----SCSVKENISATEAR---RVFLPVKFY 329
Cdd:pfam14868   1 VALLNNTWKFVIKLSQKGKSLLESKLNHGDIILSLCSLLLESLHSCLEAAeqikQSGLQESTSSTEAKlfqRTFKPCRFF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  330 LINAVKVAALFPNQVSMVFKEISLCILMISAFKVSLSQQTHGKYASEVMTDLLEKTTVDLLNALLNAGEITQELRLSLLD 409
Cdd:pfam14868  81 LNNLVHYTKEFPSFLSKSCSELHQLYLQISSKGILFPPSLCAPTASEALSEELEATSLVLLDALLNQLLPFQPFAEAVLD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  410 SLFideqcfptqvcnkqghgsqtepslvdilslsvesaasargLLLARVVLFQAVMRYSSELEEDA-------------- 475
Cdd:pfam14868 161 SLL----------------------------------------LLLPQCLLLLNVLGKSPSQPEEVltlwcdgsqfpeet 200
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  476 -KLAITRKLQWLLDVLTDEKVYTSVLSSQLPMADGSGKT--IVWESMFSALLLSLKTLMITlSSSPAWEELETLLLKNLL 552
Cdd:pfam14868 201 pRLPLLKALFWSLDQCSGERVYSSVLPVQLPGVMGKGQAqvLVWQTLYQHVCVSLCTFMIA-LSPSAFSELERFLLEAVL 279
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  553 HPHFLCWQIVMELWCFWARHATDVTVANVIDKLCIFMLSMSTSEAPLCPdsvLRRTAKSICFLLTHSPKSLTAQVYKNIS 632
Cdd:pfam14868 280 HPHFLCALLATDVWCFLARYGTAELCAHHVDLLAHLIKSCPSECYQLSH---LRKLLRRLCFLLTPGHQSEFVQVFSPKE 356
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  633 TESrsesapdayLALLLEGFPLNFLPDRMISDAKKQIVAEFFHFIENFtektSNSSRYFVQggpvvALSACLGILKMSIP 712
Cdd:pfam14868 357 VEN---------LLLLWEGFPLQALSDDLRKQVEREIVTLFFGFLEKW----LNGGYKLGE-----STSSSLQSQQVKIS 418
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  713 EIDSR----TLKFGVALIQKLRKSKDEMTRDRYTEI----------------------LSETLSIISRSEQLYTCQEMDN 766
Cdd:pfam14868 419 DIDVKsvntALSFLLAVIQGSGSALDEEQKDSLTELitqlwarmspkqvsshpvlqqtLSLLLSIIANLIQLYEPQEIEQ 498
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685351297  767 VITELQRLFITETDNSQhhlhkLKPSLALFLSGLSNYEMSETETCPKSRAVWELYHLLLRKRHWALVHHAVTAFGYFCAR 846
Cdd:pfam14868 499 VITELTSLFILEPPDSD-----LKLALLDFLSSLGKLFIPEDIQCQVLPALWELFHVLLAERHWLLVQHALEAFGYFAER 573

                  ....*.
gi 685351297  847 TGCAQL 852
Cdd:pfam14868 574 TSHEQL 579
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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