PREDICTED: transcriptional repressor NF-X1, partial [Eurypyga helias]
Protein Classification
transcriptional repressor NF-X1( domain architecture ID 10149430)
transcriptional repressor NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| R3H_NF-X1 | cd02643 | R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a ... |
590-663 | 8.50e-42 | ||
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. : Pssm-ID: 100072 Cd Length: 74 Bit Score: 146.35 E-value: 8.50e-42
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
224-275 | 4.32e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. : Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.32e-10
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
98-146 | 4.68e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. : Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.68e-10
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
314-366 | 1.60e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. : Pssm-ID: 100116 Cd Length: 49 Bit Score: 48.11 E-value: 1.60e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
159-201 | 2.49e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. : Pssm-ID: 100116 Cd Length: 49 Bit Score: 47.73 E-value: 2.49e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
42-92 | 2.42e-06 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. : Pssm-ID: 100116 Cd Length: 49 Bit Score: 45.03 E-value: 2.42e-06
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| NF-X1-zinc-finger super family | cl10082 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
425-470 | 1.03e-03 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. The actual alignment was detected with superfamily member cd06008: Pssm-ID: 100116 Cd Length: 49 Bit Score: 37.32 E-value: 1.03e-03
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| Name | Accession | Description | Interval | E-value | ||
| R3H_NF-X1 | cd02643 | R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a ... |
590-663 | 8.50e-42 | ||
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100072 Cd Length: 74 Bit Score: 146.35 E-value: 8.50e-42
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| R3H | smart00393 | Putative single-stranded nucleic acids-binding domain; |
586-664 | 1.77e-21 | ||
Putative single-stranded nucleic acids-binding domain; Pssm-ID: 214647 Cd Length: 79 Bit Score: 88.90 E-value: 1.77e-21
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| R3H | pfam01424 | R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
598-662 | 1.41e-16 | ||
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA. Pssm-ID: 460206 Cd Length: 60 Bit Score: 74.07 E-value: 1.41e-16
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
224-275 | 4.32e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.32e-10
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
98-146 | 4.68e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.68e-10
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| Jag | COG1847 | Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains [General ... |
604-665 | 1.12e-08 | ||
Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains [General function prediction only]; Pssm-ID: 441452 [Multi-domain] Cd Length: 143 Bit Score: 54.35 E-value: 1.12e-08
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
314-366 | 1.60e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 48.11 E-value: 1.60e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
159-201 | 2.49e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 47.73 E-value: 2.49e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
42-92 | 2.42e-06 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 45.03 E-value: 2.42e-06
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| Jag_EloR | NF041568 | RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic ... |
615-662 | 3.75e-04 | ||
RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic acid-binding proteins (RNA or single-stranded DNA) with a KH domain at the N-terminus, an R3H domain at the C-terminus, and additional regions of homology. The founding member of this family was JAG (spoIIIJ Associated Gene) from Bacillus subtilis, but later work in other lineages, such as Streptococcus pneumoniae, as established a role in controlling cell elongation and the operation of the elongasome. The S. pneumoniae protein, a protein that undergoes regulatory phosphorylation and dephosphorylation, is also called RNA-binding cell elongation regulator EloR, and also KhpB. Pssm-ID: 469453 [Multi-domain] Cd Length: 203 Bit Score: 42.42 E-value: 3.75e-04
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
425-470 | 1.03e-03 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 37.32 E-value: 1.03e-03
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| Name | Accession | Description | Interval | E-value | ||
| R3H_NF-X1 | cd02643 | R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a ... |
590-663 | 8.50e-42 | ||
R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100072 Cd Length: 74 Bit Score: 146.35 E-value: 8.50e-42
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| R3H | smart00393 | Putative single-stranded nucleic acids-binding domain; |
586-664 | 1.77e-21 | ||
Putative single-stranded nucleic acids-binding domain; Pssm-ID: 214647 Cd Length: 79 Bit Score: 88.90 E-value: 1.77e-21
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| R3H | pfam01424 | R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ... |
598-662 | 1.41e-16 | ||
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA. Pssm-ID: 460206 Cd Length: 60 Bit Score: 74.07 E-value: 1.41e-16
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| R3H | cd02325 | R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ... |
600-662 | 1.61e-15 | ||
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100064 Cd Length: 59 Bit Score: 71.11 E-value: 1.61e-15
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| R3H_unknown_2 | cd06006 | R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain ... |
601-661 | 3.08e-11 | ||
R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100076 Cd Length: 59 Bit Score: 58.92 E-value: 3.08e-11
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
224-275 | 4.32e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.32e-10
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
98-146 | 4.68e-10 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 55.43 E-value: 4.68e-10
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| Jag | COG1847 | Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains [General ... |
604-665 | 1.12e-08 | ||
Predicted RNA-binding protein Jag (SpoIIIJ-associated), conains KH and R3H domains [General function prediction only]; Pssm-ID: 441452 [Multi-domain] Cd Length: 143 Bit Score: 54.35 E-value: 1.12e-08
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| R3H_jag | cd02644 | R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with ... |
604-662 | 1.57e-08 | ||
R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100073 Cd Length: 67 Bit Score: 51.70 E-value: 1.57e-08
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
314-366 | 1.60e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 48.11 E-value: 1.60e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
159-201 | 2.49e-07 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 47.73 E-value: 2.49e-07
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
42-92 | 2.42e-06 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 45.03 E-value: 2.42e-06
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| Jag_EloR | NF041568 | RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic ... |
615-662 | 3.75e-04 | ||
RNA-binding cell elongation regulator Jag/EloR; Members of this family are nucleic acid-binding proteins (RNA or single-stranded DNA) with a KH domain at the N-terminus, an R3H domain at the C-terminus, and additional regions of homology. The founding member of this family was JAG (spoIIIJ Associated Gene) from Bacillus subtilis, but later work in other lineages, such as Streptococcus pneumoniae, as established a role in controlling cell elongation and the operation of the elongasome. The S. pneumoniae protein, a protein that undergoes regulatory phosphorylation and dephosphorylation, is also called RNA-binding cell elongation regulator EloR, and also KhpB. Pssm-ID: 469453 [Multi-domain] Cd Length: 203 Bit Score: 42.42 E-value: 3.75e-04
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| NF-X1-zinc-finger | cd06008 | Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear ... |
425-470 | 1.03e-03 | ||
Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms. Pssm-ID: 100116 Cd Length: 49 Bit Score: 37.32 E-value: 1.03e-03
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| R3H_NRF | cd02640 | R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB ... |
627-662 | 2.67e-03 | ||
R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100069 Cd Length: 60 Bit Score: 36.61 E-value: 2.67e-03
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| R3H_encore_like | cd02642 | R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the ... |
596-662 | 3.38e-03 | ||
R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100071 Cd Length: 63 Bit Score: 36.43 E-value: 3.38e-03
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| R3H_sperm-antigen | cd02636 | R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ... |
601-661 | 4.21e-03 | ||
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Pssm-ID: 100065 Cd Length: 61 Bit Score: 36.15 E-value: 4.21e-03
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| Blast search parameters | ||||
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