|
Name |
Accession |
Description |
Interval |
E-value |
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
132-695 |
0e+00 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 682.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 132 RALVDTAAPFESVREAVTKFGGIVDWKAYRSQTLERHRVMQLELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVE 211
Cdd:pfam05701 1 RGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 212 ELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQTQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASE 291
Cdd:pfam05701 81 ELKLNLERAQTEEAQAKQDSELAKLRVEEMEQGIADEASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASLVSE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 292 RDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCLSWEKELQQAQEELQQLNM 371
Cdd:pfam05701 161 RDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 372 QLVSKTDVQSKLDENMRMLQSLGTELAAYMGNKLNEEAgvvedDGSDEAKEISRSIKRALASIRRELEGVRGNIEKAKDE 451
Cdd:pfam05701 241 QLLSAKDLKSKLETASALLLDLKAELAAYMESKLKEEA-----DGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 452 TNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVELPKILQQAAQEADD 531
Cdd:pfam05701 316 VNCLRVAAASLRSELEKEKAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 532 AKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKASEKLALVAAQALQESE---ETSSVEDSPRTITLPI 608
Cdd:pfam05701 396 AKSLAQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAKASEKLALAAIKALQESEssaESTNQEDSPRGVTLSL 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 609 SEYHSLSKRVYEAEELANERVVVALTQIELAKESETRTLERVHEAAKEMHQKKDALEIALERAERAKEGKLGAEQELRKW 688
Cdd:pfam05701 476 EEYYELSKRAHEAEELANKRVAEAVSQIEEAKESELRSLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKW 555
|
....*..
gi 1002850103 689 RAELEQR 695
Cdd:pfam05701 556 RAEHEQR 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-701 |
2.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 2.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 186 KQDSEAAEMAKlQVVEELERTRRLVEELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQTQMTVAKERHQ 265
Cdd:COG1196 206 ERQAEKAERYR-ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 266 KAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAA 345
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 346 LAKEQDCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLGTELAAYMGNKLNEEAGVVEDDGS-DEAKEIS 424
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 425 RSIKRALASIRRELEGVRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMV 504
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 505 HKKEVETREKMVElpkilqqAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKASEKLALVA 584
Cdd:COG1196 525 AVAVLIGVEAAYE-------AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 585 AQALQESEETSSVEDSPR-----TITLPISEYHSLSKRVYEAEELANERVVVAL--TQIELAKESETRTLERVHEAAKEM 657
Cdd:COG1196 598 GAAVDLVASDLREADARYyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1002850103 658 HQKKDALEIALERAERAKEGKLGAEQELRKWRAELEQRRKAAKH 701
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-723 |
2.15e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 58 PSAQESDDPLKDKTdLPTSTSKAEVNNISENGSTNENAIPDELKPKQDKRDHEENIAATTNIKTETETRPESPYRAlvDT 137
Cdd:PTZ00121 1074 PSYKDFDFDAKEDN-RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA--ED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 138 AAPFESVREAVTKFGGIVDWKAYRSQTLERHRvMQLELDKAQqEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELK--- 214
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAE-ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKaea 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 215 -HKLERAEIDMDQAKQDSELAQlrAQEMEQGIDDEASVIAQTQMTVAKERHQKA-----VEELKLVKDEMESTHERHTVL 288
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAKKAEEERN--NEEIRKFEEARMAHFARRQAAIKAEEARKAdelkkAEEKKKADEAKKAEEKKKADE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 289 ASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCLswEKELQQAQEELQQ 368
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK--KKEEAKKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 369 LNMQLVSKTD-VQSKLDENMRMLQSLGTELAAymgNKLNEEAG--VVEDDGSDEAKEISRSIKRA-----LASIRRELEG 440
Cdd:PTZ00121 1385 KKAEEKKKADeAKKKAEEDKKKADELKKAAAA---KKKADEAKkkAEEKKKADEAKKKAEEAKKAdeakkKAEEAKKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 441 VRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVELPK 520
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 521 ilQQAAQEADDAKVAahsaqEELRKAKE--DAEQTKAAAA--TVETRLHAVLKEIEASKASEKLALVAAQALQESEETSS 596
Cdd:PTZ00121 1542 --AEEKKKADELKKA-----EELKKAEEkkKAEEAKKAEEdkNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 597 VEDSpRTITLPISEYHSLSKRVYEAEELANERVVVALtqiELAKESETRTLERVHEAAKEMHQKKDALEIALERAERAKE 676
Cdd:PTZ00121 1615 AEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE---ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1002850103 677 GKLGAEQELRKWRAE-----LEQRRKAAKHVANPWSASPVRLPEQKVSYQED 723
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEelkkkEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-685 |
1.45e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 142 ESVREAVTKFGGIVDWKAYRSQTLERHRVmqlELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELKHKLERAE 221
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRE---RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 222 IDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQ----------------TQMTVAKERHQKAVEEL-----KLVKDEMES 280
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQlelqiaslnneierleARLERLEDRRERLQQEIeellkKLEEAELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 281 THERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEE--------HRLGAALAKEQ-- 350
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfSEGVKALLKNQsg 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 351 ---------DCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLD----------------------------------ENM 387
Cdd:TIGR02168 518 lsgilgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKaiaflkqnelgrvtflpldsikgteiqgndreilKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 388 RMLQSLGTEL--------------------------AAYMGNKLNEEAGVVEDDG-----------------------SD 418
Cdd:TIGR02168 598 EGFLGVAKDLvkfdpklrkalsyllggvlvvddldnALELAKKLRPGYRIVTLDGdlvrpggvitggsaktnssilerRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 419 EAKEISRSIKRA---LASIRRELEGVRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLN 495
Cdd:TIGR02168 678 EIEELEEKIEELeekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 496 RTKEDIEMVHKKEVETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASK 575
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 576 ASekLALVAAQALQESEETSSVEDSPRTITLPISEYHSlskrvyEAEELANERVVVAlTQIELAKESETRTLERVHEAAK 655
Cdd:TIGR02168 838 RR--LEDLEEQIEELSEDIESLAAEIEELEELIEELES------ELEALLNERASLE-EALALLRSELEELSEELRELES 908
|
650 660 670
....*....|....*....|....*....|
gi 1002850103 656 EMHQKKDALEIALERAERAKEGKLGAEQEL 685
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
132-695 |
0e+00 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 682.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 132 RALVDTAAPFESVREAVTKFGGIVDWKAYRSQTLERHRVMQLELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVE 211
Cdd:pfam05701 1 RGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 212 ELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQTQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASE 291
Cdd:pfam05701 81 ELKLNLERAQTEEAQAKQDSELAKLRVEEMEQGIADEASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASLVSE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 292 RDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCLSWEKELQQAQEELQQLNM 371
Cdd:pfam05701 161 RDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 372 QLVSKTDVQSKLDENMRMLQSLGTELAAYMGNKLNEEAgvvedDGSDEAKEISRSIKRALASIRRELEGVRGNIEKAKDE 451
Cdd:pfam05701 241 QLLSAKDLKSKLETASALLLDLKAELAAYMESKLKEEA-----DGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 452 TNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVELPKILQQAAQEADD 531
Cdd:pfam05701 316 VNCLRVAAASLRSELEKEKAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 532 AKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKASEKLALVAAQALQESE---ETSSVEDSPRTITLPI 608
Cdd:pfam05701 396 AKSLAQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAKASEKLALAAIKALQESEssaESTNQEDSPRGVTLSL 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 609 SEYHSLSKRVYEAEELANERVVVALTQIELAKESETRTLERVHEAAKEMHQKKDALEIALERAERAKEGKLGAEQELRKW 688
Cdd:pfam05701 476 EEYYELSKRAHEAEELANKRVAEAVSQIEEAKESELRSLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKW 555
|
....*..
gi 1002850103 689 RAELEQR 695
Cdd:pfam05701 556 RAEHEQR 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-701 |
2.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 2.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 186 KQDSEAAEMAKlQVVEELERTRRLVEELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQTQMTVAKERHQ 265
Cdd:COG1196 206 ERQAEKAERYR-ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 266 KAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAA 345
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 346 LAKEQDCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLGTELAAYMGNKLNEEAGVVEDDGS-DEAKEIS 424
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 425 RSIKRALASIRRELEGVRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMV 504
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 505 HKKEVETREKMVElpkilqqAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKASEKLALVA 584
Cdd:COG1196 525 AVAVLIGVEAAYE-------AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 585 AQALQESEETSSVEDSPR-----TITLPISEYHSLSKRVYEAEELANERVVVAL--TQIELAKESETRTLERVHEAAKEM 657
Cdd:COG1196 598 GAAVDLVASDLREADARYyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEA 677
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1002850103 658 HQKKDALEIALERAERAKEGKLGAEQELRKWRAELEQRRKAAKH 701
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-698 |
2.15e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 166 ERHRVMQLELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGI 245
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 246 DDEASVIAQTQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKET--EKRVEELTLELIAI 323
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEalLERLERLEEELEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 324 KESLESAHAAHHEAEEHRLGAALAKEQDCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLGTELAAYMGn 403
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG- 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 404 klnEEAGVVEDDGSDEAKEISRSI------KRALASIRRELEGVRGNIEKAKDETNLIRAIAeslrsELDKEKASLVTLH 477
Cdd:COG1196 506 ---FLEGVKAALLLAGLRGLAGAVavligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIE-----YLKAAKAGRATFL 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 478 QQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAA 557
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 558 ATVETRLHAVLKEIEASKASEKLALVAAQALQESEETSSVEDsprtitlpiseyhslskrvyEAEELANERVVVALTQIE 637
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL--------------------LAEEEEERELAEAEEERL 717
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002850103 638 LAKESETRTLERVHEAAKEMHQKKDALEIALERAERAKEGKLGAEQELRKWRAELEQRRKA 698
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-723 |
2.15e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 2.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 58 PSAQESDDPLKDKTdLPTSTSKAEVNNISENGSTNENAIPDELKPKQDKRDHEENIAATTNIKTETETRPESPYRAlvDT 137
Cdd:PTZ00121 1074 PSYKDFDFDAKEDN-RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA--ED 1150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 138 AAPFESVREAVTKFGGIVDWKAYRSQTLERHRvMQLELDKAQqEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELK--- 214
Cdd:PTZ00121 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAAR-KAEEVRKAE-ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKaea 1228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 215 -HKLERAEIDMDQAKQDSELAQlrAQEMEQGIDDEASVIAQTQMTVAKERHQKA-----VEELKLVKDEMESTHERHTVL 288
Cdd:PTZ00121 1229 vKKAEEAKKDAEEAKKAEEERN--NEEIRKFEEARMAHFARRQAAIKAEEARKAdelkkAEEKKKADEAKKAEEKKKADE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 289 ASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCLswEKELQQAQEELQQ 368
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK--KKEEAKKKADAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 369 LNMQLVSKTD-VQSKLDENMRMLQSLGTELAAymgNKLNEEAG--VVEDDGSDEAKEISRSIKRA-----LASIRRELEG 440
Cdd:PTZ00121 1385 KKAEEKKKADeAKKKAEEDKKKADELKKAAAA---KKKADEAKkkAEEKKKADEAKKKAEEAKKAdeakkKAEEAKKAEE 1461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 441 VRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVELPK 520
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 521 ilQQAAQEADDAKVAahsaqEELRKAKE--DAEQTKAAAA--TVETRLHAVLKEIEASKASEKLALVAAQALQESEETSS 596
Cdd:PTZ00121 1542 --AEEKKKADELKKA-----EELKKAEEkkKAEEAKKAEEdkNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 597 VEDSpRTITLPISEYHSLSKRVYEAEELANERVVVALtqiELAKESETRTLERVHEAAKEMHQKKDALEIALERAERAKE 676
Cdd:PTZ00121 1615 AEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE---ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1002850103 677 GKLGAEQELRKWRAE-----LEQRRKAAKHVANPWSASPVRLPEQKVSYQED 723
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEelkkkEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-736 |
1.56e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 190 EAAEMAKLQVVEELERTRRlVEELKHKLERAEiDMDQAKQDSELAQLRAQEMEQGIDDeasviAQTQMTVAKERHQKAVE 269
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKK-ADEAKKKAEEAK-KADEAKKKAEEAKKKADAAKKKAEE-----AKKAAEAAKAEAEAAAD 1357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 270 ELKLVKDEMESTHERHTVLASERDIAAKRAEEaVSAAKETEKRVEELTLELIAIKEslesahaahheaeehrlgAALAKE 349
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKK------------------AAAAKK 1418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 350 QDCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLGTElaAYMGNKLNEEAGVVED-DGSDEAKEISRSIK 428
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK--AEEAKKADEAKKKAEEaKKADEAKKKAEEAK 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 429 RALASIRRELEGVRGNIEKAKDETnliRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEadLNRTKEDIEMVHKKE 508
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEE---AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 509 VETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRlhavlKEIEASKASEKLALVAAQAL 588
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-----KAEEEKKKVEQLKKKEAEEK 1646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 589 QESEETSSVEDSPRTITLPISEYHSLSKRVYEAEELANERVVVALTQIElAKESETRTLERVHEAAKEMHQKKDALEIAL 668
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK-KEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1002850103 669 E-RAERAKEGKLGAEQELRK---WRAELEQRRKAAKHVANPWSASPVRLPEQKVSYQEDDEPKSPMSNNSMD 736
Cdd:PTZ00121 1726 EeNKIKAEEAKKEAEEDKKKaeeAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
436-700 |
5.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 5.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 436 RELEGVRGNIEKAKD-----ETNLI-----RAIAE---SLRSELDKEKASLV-----TLHQQEGMASITVSSLEADLNRT 497
Cdd:COG1196 179 RKLEATEENLERLEDilgelERQLEplerqAEKAEryrELKEELKELEAELLllklrELEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 498 KEDIEMVHKKEVETREKMVElpkiLQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKAS 577
Cdd:COG1196 259 EAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 578 EKLALVAAQALQESEETssvedsprTITLPISEYHSLSKRVYEAEELANERvvvaLTQIELAKESETRTLERVHEAAKEM 657
Cdd:COG1196 335 LEEELEELEEELEEAEE--------ELEEAEAELAEAEEALLEAEAELAEA----EEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1002850103 658 HQKKDALEIALERAERAKEGKLGAEQELRKWRAELEQRRKAAK 700
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
170-678 |
1.09e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 170 VMQLELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTR------RLVEELKHKLERAEIDMDQ------AKQDSELAQLR 237
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkaeekKKADEAKKKAEEDKKKADElkkaaaAKKKADEAKKK 1426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 238 AQEMEQGidDEASVIAQtQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKETEKRVEELT 317
Cdd:PTZ00121 1427 AEEKKKA--DEAKKKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 318 LELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCL---SWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLG 394
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 395 TELAAYMGNKLNEEAGVVEDDGSDEAKEISRSIK-RALASIRRELEGVRGNIEKAK----------------DETNLIRA 457
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKAEEEKKKVEQLKkkeaeekkkaeelkkaEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 458 IAESLRSELDKEKASLVTLHQQEGMASITVSSLEADlnrTKEDIEMVHKKEVETREKMVELPKILQQAAQEADDAKVAAH 537
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE---EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 538 SAQ---EELRKAKEDAEQTKAAAATVETRLHAVLKEIEASKASEKLALVAAQALQESEETSSVEDSPRTITLPISEYHSL 614
Cdd:PTZ00121 1741 EDKkkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002850103 615 SKRVYEAEELANERVVVAL-TQIELAKESETRTLERVHEAAKE------MHQKKDALEIALERAERAKEGK 678
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSKnMQLEEADAFEKHKFNKNNENGEDgnkeadFNKEKDLKEDDEEEIEEADEIE 1891
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
426-703 |
1.28e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 426 SIKRALASIRRELEGVRGNIEKAKDETNLIRAIAESL---RSELDKEKASLVTLHQQegmASITVSSLEADLNRTKEDIE 502
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVearREELEDRDEELRDRLEE---CRVAAQAHNEEAESLREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 503 MVHKKEVETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKE----------DAEQTKAAAATVETRLHAVLKEIE 572
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvdlgNAEDFLEELREERDELREREAELE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 573 ASKASEKLALVAAQALQES----EETSSVEDSPRTITLPISE--YHSLSKRVYEAEElANERVVVALTQIELAKESETRT 646
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpECGQPVEGSPHVETIEEDRerVEELEAELEDLEE-EVEEVEERLERAEDLVEAEDRI 511
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 647 ---LERVHEAAKEMHQKKDALEIALERAERAKEGKLGAEQELRKWRAELEQRRKAAKHVA 703
Cdd:PRK02224 512 erlEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-685 |
1.45e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 142 ESVREAVTKFGGIVDWKAYRSQTLERHRVmqlELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELKHKLERAE 221
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRE---RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 222 IDMDQAKQDSELAQLRAQEMEQGIDDEASVIAQ----------------TQMTVAKERHQKAVEEL-----KLVKDEMES 280
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQlelqiaslnneierleARLERLEDRRERLQQEIeellkKLEEAELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 281 THERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEE--------HRLGAALAKEQ-- 350
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfSEGVKALLKNQsg 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 351 ---------DCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLD----------------------------------ENM 387
Cdd:TIGR02168 518 lsgilgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKaiaflkqnelgrvtflpldsikgteiqgndreilKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 388 RMLQSLGTEL--------------------------AAYMGNKLNEEAGVVEDDG-----------------------SD 418
Cdd:TIGR02168 598 EGFLGVAKDLvkfdpklrkalsyllggvlvvddldnALELAKKLRPGYRIVTLDGdlvrpggvitggsaktnssilerRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 419 EAKEISRSIKRA---LASIRRELEGVRGNIEKAKDETNLIRAIAESLRSELDKEKASLVTLHQQEGMASITVSSLEADLN 495
Cdd:TIGR02168 678 EIEELEEKIEELeekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 496 RTKEDIEMVHKKEVETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEASK 575
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 576 ASekLALVAAQALQESEETSSVEDSPRTITLPISEYHSlskrvyEAEELANERVVVAlTQIELAKESETRTLERVHEAAK 655
Cdd:TIGR02168 838 RR--LEDLEEQIEELSEDIESLAAEIEELEELIEELES------ELEALLNERASLE-EALALLRSELEELSEELRELES 908
|
650 660 670
....*....|....*....|....*....|
gi 1002850103 656 EMHQKKDALEIALERAERAKEGKLGAEQEL 685
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-496 |
3.99e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 161 RSQTLERHRvmqlELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELKHKLERAEIDMDQAKQDSELAQLRAQE 240
Cdd:TIGR02168 669 NSSILERRR----EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 241 MEQGIDDEASVI--AQTQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTL 318
Cdd:TIGR02168 745 LEERIAQLSKELteLEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 319 ELiaikESLESAHAAHHEAEEHRLGAALAKEQDCLSWEKELQQAQEELQQLNMQLVSKTDVQSKLDENMRMLQSLGTELA 398
Cdd:TIGR02168 825 RL----ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 399 AymgnKLNEEAGVVeddgsDEAKEISRSIKRALASIRRELEGVRGNIEkakdetNLIRAIAESLRSELDKEKASLVTLHQ 478
Cdd:TIGR02168 901 E----ELRELESKR-----SELRRELEELREKLAQLELRLEGLEVRID------NLQERLSEEYSLTLEEAEALENKIED 965
|
330
....*....|....*...
gi 1002850103 479 QEGMASITVSSLEADLNR 496
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-623 |
1.53e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 372 QLVSKTDVQSKLDEnmrMLQSLGTELAAyMGNKLNEEAGVVEDDGSDEakeiSRSIKRALASIRRELEGVRGNIEKAKDE 451
Cdd:TIGR02169 245 QLASLEEELEKLTE---EISELEKRLEE-IEQLLEELNKKIKDLGEEE----QLRVKEKIGELEAEIASLERSIAEKERE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 452 TNLI---RAIAESLRSELDKEKASLVTLHQQEGM--ASIT--VSSLEADLNRTKEDIEMVHKKEVETREKMVELPKILQQ 524
Cdd:TIGR02169 317 LEDAeerLAKLEAEIDKLLAEIEELEREIEEERKrrDKLTeeYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 525 AAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETRLHAVLKEIEAskASEKLALVAAQALQESEETSSVEDSPRTI 604
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED--KALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
250
....*....|....*....
gi 1002850103 605 TlpiSEYHSLSKRVYEAEE 623
Cdd:TIGR02169 475 K---EEYDRVEKELSKLQR 490
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
188-698 |
8.94e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 8.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 188 DSEAAEMAKLQVVEELERTRRLVEELKHKLERAEIDMDQAKQDSELAQLRAQEME---QGIDDEASVIAQTQMTVAKERH 264
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEerrEELETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 265 QKavEELklvKDEMESTHERHTVLASERDIAAKRAEEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHrlGA 344
Cdd:PRK02224 273 ER--EEL---AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE--AE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 345 ALAKEQDCLSWEKELQQAQEELQQLNMQ--LVSKTDVQSKLDEnmrmLQSLGTELAAYMGNKLNEEAGVveDDGSDEAKE 422
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEeaREAVEDRREEIEE----LEEEIEELRERFGDAPVDLGNA--EDFLEELRE 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 423 ISRSIKRALASIRRELEGVRGNIEKAK---------------------DETNLIRAIAESLRSELDKEKASLVTLHQQEG 481
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEalleagkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEVEEVEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 482 MASiTVSSLEADLNRTKEDIEMVHKKEVETREKMVELPKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVE 561
Cdd:PRK02224 500 RAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 562 TRLHAVLKEIEA-SKASEKLALVA-----AQALQESEETSSVEDSPRTITLpiseyHSLSKRVYE-AEELANERVVVALT 634
Cdd:PRK02224 579 SKLAELKERIESlERIRTLLAAIAdaedeIERLREKREALAELNDERRERL-----AEKRERKRElEAEFDEARIEEARE 653
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1002850103 635 QIELAKESetrtLERVHEAAKEMHQKKDALEIALEraerAKEGKLGAEQELRKWRAELEQRRKA 698
Cdd:PRK02224 654 DKERAEEY----LEQVEEKLDELREERDDLQAEIG----AVENELEELEELRERREALENRVEA 709
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-319 |
3.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 174 ELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEelkhkLERAEIDMDQAkqDSELAQLRAQ--EMEQGIDDEASv 251
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREALQRLAE-----YSWDEIDVASA--EREIAELEAEleRLDASSDDLAA- 689
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1002850103 252 iAQTQMTVAKERHQKAVEELKLVKDEMESTHERHTVLASERDIAAKRAEEAVSAAKET-----EKRVEELTLE 319
Cdd:COG4913 690 -LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElrallEERFAAALGD 761
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
159-312 |
4.94e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 159 AYRSQTLERHRvmQLELDKAQQEIPQFKQDSEAAEMAKLQVVEElERTRRLVEELKHKLERAEiDMDQAKQDSELAQLRA 238
Cdd:pfam17380 401 ARKVKILEEER--QRKIQQQKVEMEQIRAEQEEARQREVRRLEE-ERAREMERVRLEEQERQQ-QVERLRQQEEERKRKK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 239 QEMEQGIDDEASVIAQTQMTVAKE---RHQKAVEE---LKLVKDEMEsthERHTVLASERDiaAKRAEEAVSAAKETEKR 312
Cdd:pfam17380 477 LELEKEKRDRKRAEEQRRKILEKEleeRKQAMIEEerkRKLLEKEME---ERQKAIYEEER--RREAEEERRKQQEMEER 551
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
169-271 |
6.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 169 RVMQLELDKAQQEIPQFKQDSEAAEMAKLQVVEELERTRRLVEELKHKLERAEiDMDQAKQDSELAQLRAQEMEQGIDDE 248
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE-DLARLELRALLEERFAAALGDAVERE 766
|
90 100
....*....|....*....|...
gi 1002850103 249 ASVIAQTQMTVAKERHQKAVEEL 271
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEEL 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
210-563 |
6.87e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 210 VEELKHKLERAEIDMDQAKQDSELAQLRAQEMEQGIDdeasviaqtqmTVAKERHQK-AVEELKLVKDEMESTHERHTVL 288
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE-----------RLRREREKAeRYQALLKEKREYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 289 ASERDIAAKRA---------EEAVSAAKETEKRVEELTLELIAIKESLESAHAAHHEAEEHRLGAALAKEQDCLSWEKEL 359
Cdd:TIGR02169 234 ALERQKEAIERqlasleeelEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 360 QQAQEELQQLNMQLVSKTD-VQSKLDENMRMLQSLGTELAAYMGNKLNEEAgvVEDDGSDEAKEISRSIKRAlasiRREL 438
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDkLLAEIEELEREIEEERKRRDKLTEEYAELKE--ELEDLRAELEEVDKEFAET----RDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002850103 439 EGVRGNIEKAKDETNliraiaeSLRSELDKEKASLVTLHQQEGMASITVSSLEADLNRTKEDIEMVHKKEVETREKMVEL 518
Cdd:TIGR02169 388 KDYREKLEKLKREIN-------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1002850103 519 PKILQQAAQEADDAKVAAHSAQEELRKAKEDAEQTKAAAATVETR 563
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| |
