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Conserved domains on  [gi|1025327585|ref|XP_016388504|]
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PREDICTED: protein NDRG3-like isoform X4 [Sinocyclocheilus rhinocerous]

Protein Classification

NDRG family protein( domain architecture ID 11140417)

N-myc downstream-regulated gene (NDRG) family protein may be involved in cellular differentiation events; similar to Homo sapiens protein NDRG1, which is a stress-responsive protein involved in hormone responses, cell growth, and differentiation; belongs to the alpha/beta hydrolase superfamily

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
31-316 2.23e-158

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


:

Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 446.03  E-value: 2.23e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  31 EHDIETPHGVLHVTLRGTPKGNRPVILTYHDIGLNHKSCFNTLFNFEDMQEITQHFAVVHVDAPGQQESAPPFPTGYQYP 110
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 111 TMDELAEMLPSVLTQLKINSVIGIGVGAGAYILTRLALNEPALVEGLVLINVDPCAKGWIDWAASKLS-------GWTSN 183
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 184 LVDIVMAHHFSTDELTENQEIIQTYRLHIAQDINQDNLALFCHSYNSRQDLEIERPVLGlnentvktLKCPALLIVGDTS 263
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLE--------TKCPVLLVVGDNS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1025327585 264 PAVEAVVECNSRLNPTKTTLLKMADCGGLPQVVQPGKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 233 PHVDAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
 
Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
31-316 2.23e-158

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 446.03  E-value: 2.23e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  31 EHDIETPHGVLHVTLRGTPKGNRPVILTYHDIGLNHKSCFNTLFNFEDMQEITQHFAVVHVDAPGQQESAPPFPTGYQYP 110
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 111 TMDELAEMLPSVLTQLKINSVIGIGVGAGAYILTRLALNEPALVEGLVLINVDPCAKGWIDWAASKLS-------GWTSN 183
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 184 LVDIVMAHHFSTDELTENQEIIQTYRLHIAQDINQDNLALFCHSYNSRQDLEIERPVLGlnentvktLKCPALLIVGDTS 263
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLE--------TKCPVLLVVGDNS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1025327585 264 PAVEAVVECNSRLNPTKTTLLKMADCGGLPQVVQPGKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 233 PHVDAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
31-311 9.51e-13

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 66.95  E-value: 9.51e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  31 EHDIETPHGVLHVTLRGTpkGNRPVILTyHDIGLNHkSCFNTLfnfedMQEITQHFAVVHVDAPGQQESAPPfPTGYqyp 110
Cdd:COG0596     4 PRFVTVDGVRLHYREAGP--DGPPVVLL-HGLPGSS-YEWRPL-----IPALAAGYRVIAPDLRGHGRSDKP-AGGY--- 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 111 TMDELAEMLPSVLTQLKINSVIGIGVGAGAYILTRLALNEPALVEGLVLINvdpcakgwidwaasklsgwtsnlvdivma 190
Cdd:COG0596    71 TLDDLADDLAALLDALGLERVVLVGHSMGGMVALELAARHPERVAGLVLVD----------------------------- 121
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 191 hhfstdeltenqEIIQTYRLHIAQDINQDNLALFCHSYNSRQDLeierpvlglnENTVKTLKCPALLIVGDTSPAV---- 266
Cdd:COG0596   122 ------------EVLAALAEPLRRPGLAPEALAALLRALARTDL----------RERLARITVPTLVIWGEKDPIVppal 179
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1025327585 267 -EAVVECNSRlnptkTTLLKMADCGGLPQVVQPGKLAEAFKYFVQG 311
Cdd:COG0596   180 aRRLAELLPN-----AELVVLPGAGHFPPLEQPEAFAAALRDFLAR 220
PRK10349 PRK10349
pimeloyl-ACP methyl ester esterase BioH;
80-186 1.18e-04

pimeloyl-ACP methyl ester esterase BioH;


Pssm-ID: 137836 [Multi-domain]  Cd Length: 256  Bit Score: 43.08  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  80 QEITQHFAVVHVDAPGQQESappfpTGYQYPTMDELAEmlpSVLTQLKiNSVIGIGVGAGAYILTRLALNEPALVEGLVL 159
Cdd:PRK10349   34 EELSSHFTLHLVDLPGFGRS-----RGFGALSLADMAE---AVLQQAP-DKAIWLGWSLGGLVASQIALTHPERVQALVT 104
                          90       100       110
                  ....*....|....*....|....*....|
gi 1025327585 160 INVDPCAKGWIDWAASK---LSGWTSNLVD 186
Cdd:PRK10349  105 VASSPCFSARDEWPGIKpdvLAGFQQQLSD 134
 
Name Accession Description Interval E-value
Ndr pfam03096
Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, ...
31-316 2.23e-158

Ndr family; This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases pfam00561, suggesting that this family may have an enzymatic function (Bateman A pers. obs.).


Pssm-ID: 397285 [Multi-domain]  Cd Length: 285  Bit Score: 446.03  E-value: 2.23e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  31 EHDIETPHGVLHVTLRGTPKGNRPVILTYHDIGLNHKSCFNTLFNFEDMQEITQHFAVVHVDAPGQQESAPPFPTGYQYP 110
Cdd:pfam03096   1 EHIIETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILENFCIYHVDAPGQEDGAASFPGGYPYP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 111 TMDELAEMLPSVLTQLKINSVIGIGVGAGAYILTRLALNEPALVEGLVLINVDPCAKGWIDWAASKLS-------GWTSN 183
Cdd:pfam03096  81 SMDDLADMLPVVLDHFRLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSskllyyyGMTDS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 184 LVDIVMAHHFSTDELTENQEIIQTYRLHIAQDINQDNLALFCHSYNSRQDLEIERPVLGlnentvktLKCPALLIVGDTS 263
Cdd:pfam03096 161 AKDYLLAHYFGKEELSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLE--------TKCPVLLVVGDNS 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1025327585 264 PAVEAVVECNSRLNPTKTTLLKMADCGGLPQVVQPGKLAEAFKYFVQGMGYMP 316
Cdd:pfam03096 233 PHVDAVVECNTKLDPTKTTLLKVADCGGLVQQEQPGKLTESFKLFLQGMGYYP 285
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
31-311 9.51e-13

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 66.95  E-value: 9.51e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  31 EHDIETPHGVLHVTLRGTpkGNRPVILTyHDIGLNHkSCFNTLfnfedMQEITQHFAVVHVDAPGQQESAPPfPTGYqyp 110
Cdd:COG0596     4 PRFVTVDGVRLHYREAGP--DGPPVVLL-HGLPGSS-YEWRPL-----IPALAAGYRVIAPDLRGHGRSDKP-AGGY--- 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 111 TMDELAEMLPSVLTQLKINSVIGIGVGAGAYILTRLALNEPALVEGLVLINvdpcakgwidwaasklsgwtsnlvdivma 190
Cdd:COG0596    71 TLDDLADDLAALLDALGLERVVLVGHSMGGMVALELAARHPERVAGLVLVD----------------------------- 121
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 191 hhfstdeltenqEIIQTYRLHIAQDINQDNLALFCHSYNSRQDLeierpvlglnENTVKTLKCPALLIVGDTSPAV---- 266
Cdd:COG0596   122 ------------EVLAALAEPLRRPGLAPEALAALLRALARTDL----------RERLARITVPTLVIWGEKDPIVppal 179
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1025327585 267 -EAVVECNSRlnptkTTLLKMADCGGLPQVVQPGKLAEAFKYFVQG 311
Cdd:COG0596   180 aRRLAELLPN-----AELVVLPGAGHFPPLEQPEAFAAALRDFLAR 220
PRK10349 PRK10349
pimeloyl-ACP methyl ester esterase BioH;
80-186 1.18e-04

pimeloyl-ACP methyl ester esterase BioH;


Pssm-ID: 137836 [Multi-domain]  Cd Length: 256  Bit Score: 43.08  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  80 QEITQHFAVVHVDAPGQQESappfpTGYQYPTMDELAEmlpSVLTQLKiNSVIGIGVGAGAYILTRLALNEPALVEGLVL 159
Cdd:PRK10349   34 EELSSHFTLHLVDLPGFGRS-----RGFGALSLADMAE---AVLQQAP-DKAIWLGWSLGGLVASQIALTHPERVQALVT 104
                          90       100       110
                  ....*....|....*....|....*....|
gi 1025327585 160 INVDPCAKGWIDWAASK---LSGWTSNLVD 186
Cdd:PRK10349  105 VASSPCFSARDEWPGIKpdvLAGFQQQLSD 134
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
54-290 2.48e-04

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 42.11  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585  54 PVILTYHDIGLNHKSCFNTLFNFEDmqeitQHFAVVHVDAPGQQES-APPFPTGYqypTMDELAEMLPSVLTQLKINSVI 132
Cdd:pfam00561   1 PPVLLLHGLPGSSDLWRKLAPALAR-----DGFRVIALDLRGFGKSsRPKAQDDY---RTDDLAEDLEYILEALGLEKVN 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 133 GIGVGAGAYILTRLALNEPALVEGLVLINVDPCAKGWIDW---AASKLSGWTSN------------LVDIVMAHHFSTDE 197
Cdd:pfam00561  73 LVGHSMGGLIALAYAAKYPDRVKALVLLGALDPPHELDEAdrfILALFPGFFDGfvadfapnplgrLVAKLLALLLLRLR 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025327585 198 LT--ENQEIIQTYRLhiaQDINQDNLALFCHSYNSRQDLEIERPVLGLNENtvktlkcPALLIVGDTSPAV-EAVVECNS 274
Cdd:pfam00561 153 LLkaLPLLNKRFPSG---DYALAKSLVTGALLFIETWSTELRAKFLGRLDE-------PTLIIWGDQDPLVpPQALEKLA 222
                         250
                  ....*....|....*.
gi 1025327585 275 RLNPtKTTLLKMADCG 290
Cdd:pfam00561 223 QLFP-NARLVVIPDAG 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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