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Conserved domains on  [gi|1025417047|ref|XP_016441517|]
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PREDICTED: tubulin-folding cofactor B-like [Nicotiana tabacum]

Protein Classification

tubulin-folding cofactor B( domain architecture ID 10629794)

tubulin-folding cofactor B binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to a properly folded heterodimer

Gene Ontology:  GO:0007021|GO:0007023|GO:0043014

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ubiquitin_2 pfam14560
Ubiquitin-like domain; This entry contains ubiquitin-like domains.
 13-95 2.21e-40

Ubiquitin-like domain; This entry contains ubiquitin-like domains.


:

Pssm-ID: 405277  Cd Length: 83  Bit Score: 133.80  E-value: 2.21e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025417047  13 VLVRVTHSNIKSFSPEIRFSLQMTVEAVKEKLWKKCGTSVNSMSLELYDETGAKISVLSDNARPLGFYSPLDGYRLHVID 92
Cdd:pfam14560   1 VKLFITHSLTKAVSSERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNLVAKLDDDDALLGSYGVRDGMRIHVID 80


                  ...
gi 1025417047  93 LDP 95
Cdd:pfam14560  81 LDP 83
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 160-226 2.39e-30

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


:

Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 107.49  E-value: 2.39e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1025417047 160 IGDRCEVePGERRGTVKFVGQAEtLAPGFWVGVQFDEPAGKHDGMVKGKRYFDCPPLHGAMVRPDKV 226
Cdd:pfam01302   1 VGDRVEV-PGGRRGTVRYVGPVP-FAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
 
Name Accession Description Interval E-value
Ubiquitin_2 pfam14560
Ubiquitin-like domain; This entry contains ubiquitin-like domains.
 13-95 2.21e-40

Ubiquitin-like domain; This entry contains ubiquitin-like domains.


Pssm-ID: 405277  Cd Length: 83  Bit Score: 133.80  E-value: 2.21e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025417047  13 VLVRVTHSNIKSFSPEIRFSLQMTVEAVKEKLWKKCGTSVNSMSLELYDETGAKISVLSDNARPLGFYSPLDGYRLHVID 92
Cdd:pfam14560   1 VKLFITHSLTKAVSSERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNLVAKLDDDDALLGSYGVRDGMRIHVID 80


                  ...
gi 1025417047  93 LDP 95
Cdd:pfam14560  81 LDP 83
Ubl_TBCB cd01789
ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; ...
 13-92 1.18e-33

ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; TBCB, also termed cytoskeleton-associated protein 1, or cytoskeleton-associated protein CKAPI, or tubulin-specific chaperone B, is one of protein cofactors A through E that is required for the folding of tubulins prior to their incorporation into microtubules and heterodimer assembly. TBCB comprises an N-terminal ubiquitin-like (Ubl) domain and a C-terminal cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain. The Ubl domain of TBCB is essential for proper folding and assembly of tubulin alpha. It has a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. TBC-A through E are necessary for the biogenesis of microtubules and for cell viability.


Pssm-ID: 340487  Cd Length: 80  Bit Score: 116.52  E-value: 1.18e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025417047  13 VLVRVTHSNIKSFSPEIRFSLQMTVEAVKEKLWKKCGTSVNSMSLELYDETGAKISVLSDNARPLGFYSPLDGYRLHVID 92
Cdd:cd01789     1 VNLHITHSNLSSFFSEKRFDLSLTIGELKEKLELITGTPPSSMKLQLYDEDGKLIGTLDDDDALLGSYPVRDGMRIHVVD 80
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 160-226 2.39e-30

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 107.49  E-value: 2.39e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1025417047 160 IGDRCEVePGERRGTVKFVGQAEtLAPGFWVGVQFDEPAGKHDGMVKGKRYFDCPPLHGAMVRPDKV 226
Cdd:pfam01302   1 VGDRVEV-PGGRRGTVRYVGPVP-FAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 160-227 4.53e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 101.51  E-value: 4.53e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1025417047  160 IGDRCEVEPGERRGTVKFVGQAETlAPGFWVGVQFDEPA-GKHDGMVKGKRYFDCPPLHGAMVRPDKVK 227
Cdd:smart01052   1 VGDRVEVGGGGRRGTVRYVGPTPF-APGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 160-224 8.27e-14

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 70.48  E-value: 8.27e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1025417047 160 IGDRCEVepGERRGTVKFVGQAEtLAPGFWVGVQFDEPAGKHDGMVKGKRYFDCPPLHGAMVRPD 224
Cdd:COG5244     6 VNDRVLL--GDKFGTVRFIGKTK-FKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPD 67
 
Name Accession Description Interval E-value
Ubiquitin_2 pfam14560
Ubiquitin-like domain; This entry contains ubiquitin-like domains.
 13-95 2.21e-40

Ubiquitin-like domain; This entry contains ubiquitin-like domains.


Pssm-ID: 405277  Cd Length: 83  Bit Score: 133.80  E-value: 2.21e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025417047  13 VLVRVTHSNIKSFSPEIRFSLQMTVEAVKEKLWKKCGTSVNSMSLELYDETGAKISVLSDNARPLGFYSPLDGYRLHVID 92
Cdd:pfam14560   1 VKLFITHSLTKAVSSERRFDKSLTIEELKEKLELITGTPPSSMRLQLYDDDDNLVAKLDDDDALLGSYGVRDGMRIHVID 80


                  ...
gi 1025417047  93 LDP 95
Cdd:pfam14560  81 LDP 83
Ubl_TBCB cd01789
ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; ...
 13-92 1.18e-33

ubiquitin-like (Ubl) domain found in tubulin-folding cofactor B (TBCB) and similar proteins; TBCB, also termed cytoskeleton-associated protein 1, or cytoskeleton-associated protein CKAPI, or tubulin-specific chaperone B, is one of protein cofactors A through E that is required for the folding of tubulins prior to their incorporation into microtubules and heterodimer assembly. TBCB comprises an N-terminal ubiquitin-like (Ubl) domain and a C-terminal cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain. The Ubl domain of TBCB is essential for proper folding and assembly of tubulin alpha. It has a beta-grasp Ubl fold, a common structure involved in protein-protein interactions. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. TBC-A through E are necessary for the biogenesis of microtubules and for cell viability.


Pssm-ID: 340487  Cd Length: 80  Bit Score: 116.52  E-value: 1.18e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025417047  13 VLVRVTHSNIKSFSPEIRFSLQMTVEAVKEKLWKKCGTSVNSMSLELYDETGAKISVLSDNARPLGFYSPLDGYRLHVID 92
Cdd:cd01789     1 VNLHITHSNLSSFFSEKRFDLSLTIGELKEKLELITGTPPSSMKLQLYDEDGKLIGTLDDDDALLGSYPVRDGMRIHVVD 80
CAP_GLY pfam01302
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ...
 160-226 2.39e-30

CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 460154 [Multi-domain]  Cd Length: 65  Bit Score: 107.49  E-value: 2.39e-30
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1025417047 160 IGDRCEVePGERRGTVKFVGQAEtLAPGFWVGVQFDEPAGKHDGMVKGKRYFDCPPLHGAMVRPDKV 226
Cdd:pfam01302   1 VGDRVEV-PGGRRGTVRYVGPVP-FAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
CAP_GLY smart01052
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ...
 160-227 4.53e-28

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.


Pssm-ID: 214997 [Multi-domain]  Cd Length: 68  Bit Score: 101.51  E-value: 4.53e-28
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1025417047  160 IGDRCEVEPGERRGTVKFVGQAETlAPGFWVGVQFDEPA-GKHDGMVKGKRYFDCPPLHGAMVRPDKVK 227
Cdd:smart01052   1 VGDRVEVGGGGRRGTVRYVGPTPF-APGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
NIP100 COG5244
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ...
 160-224 8.27e-14

Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227569 [Multi-domain]  Cd Length: 669  Bit Score: 70.48  E-value: 8.27e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1025417047 160 IGDRCEVepGERRGTVKFVGQAEtLAPGFWVGVQFDEPAGKHDGMVKGKRYFDCPPLHGAMVRPD 224
Cdd:COG5244     6 VNDRVLL--GDKFGTVRFIGKTK-FKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPD 67
Ubl_ubiquitin_like cd17039
ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like ...
 15-91 5.43e-04

ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins; Ubiquitin-like (Ubl) proteins have a similar ubiquitin (Ub) beta-grasp fold and attach to other proteins in a Ubl manner but with biochemically distinct roles. Ub and Ubl proteins conjugate and deconjugate via ligases and peptidases to covalently modify target polypeptides. Some Ubl domains have adaptor roles in Ub-signaling by mediating protein-protein interaction. Prokaryotic sulfur carrier proteins are Ub-related proteins that can be activated in an ATP-dependent manner. Polyubiquitination signals for a diverse set of cellular events via different isopeptide linkages formed between the C terminus of one ubiquitin (Ub) and the epsilon-amine of K6, K11, K27, K29, K33, K48, or K63 of a second Ub. One of these seven lysine residues (K27, Ub numbering) is conserved in this Ubl_ubiquitin_like family. K27-linked Ub chains are versatile and can be recognized by several downstream receptor proteins. K27 has roles beyond chain linkage, such as in Ubl NEDD8 (which contains many of the same lysines (K6, K11, K27, K33, K48) as Ub) where K27 has a role (other than conjugation) in the mechanism of protein neddylation.


Pssm-ID: 340559 [Multi-domain]  Cd Length: 68  Bit Score: 37.58  E-value: 5.43e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1025417047  15 VRVTHSNIKSFSpeIRFSLQMTVEAVKEKLWKKCGTSVNSMSLeLYDETgakisVLSDNaRPLGFYSPLDGYRLHVI 91
Cdd:cd17039     1 ITVKTLDGKTYT--VEVDPDDTVADLKEKIEEKTGIPVEQQRL-IYNGK-----ELKDD-KTLSDYGIKDGSTIHLV 68
Ubl_TBCE cd17044
ubiquitin-like (Ubl) domain found in tubulin-folding cofactor E (TBCE) and similar proteins; ...
 30-90 2.12e-03

ubiquitin-like (Ubl) domain found in tubulin-folding cofactor E (TBCE) and similar proteins; TBCE, also termed tubulin-specific chaperone E, is a tubulin polymerizing protein involved in the second step of the tubulin folding pathway through cooperating in tubulin heterodimer dissociation both in vivo and in vitro. It may also be implicated in the maintenance of the neuronal microtubule network. Mutations in TBCE gene cause hypoparathyroidism, mental retardation and facial dysmorphism. TBCE contains an N-terminal cytoskeleton-associated protein with glycine-rich segment (CAP-Gly) domain, a leucine-rich repeat protein-protein interaction domain followed by leucine-rich repeat (LRR) domains, and a C-terminal ubiquitin-like (Ubl) domain. Ubiquitin is a protein modifier in eukaryotes that is involved in various cellular processes.


Pssm-ID: 340564  Cd Length: 83  Bit Score: 36.02  E-value: 2.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1025417047  30 RFSLQMTVEAVK---EKLWKkcgTSVNSMSLELYDETGAKISV-LSDNARPLGFYSPLDGYRLHV 90
Cdd:cd17044    21 KLPSSMTVQKLKglcERLFK---LPASKQRLSYVSSEGPGIEIeLDDDLRSLSFYSVEDGDTILV 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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