|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-1027 |
2.61e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 400 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 477
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 478 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 557
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 558 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 637
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 638 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 705
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 706 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 756
Cdd:TIGR02168 557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 757 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 811
Cdd:TIGR02168 637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 812 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 876
Cdd:TIGR02168 716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 877 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 952
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 953 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1027
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
704-978 |
2.88e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 704 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 783
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 784 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 863
Cdd:COG1196 312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 864 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 943
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270
....*....|....*....|....*....|....*
gi 1039730346 944 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 978
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
115-853 |
2.70e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 115 LQTEKESNPQKTAFLNDQLNIIQGEhskgLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEE 194
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 195 ELKTTKRKMNLKIQELRRQL--AQEKLVR-----ESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALhssmkttQ 267
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLdeLAEELAEleeklEELKEELESLEAELEELEAELEELESRLEELEEQLETL-------R 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 268 DLLAQEQRKNEDLGMTISQLKSDLNS----RDNLICKLVEENKATQISLKKEHEENIYLKSEIL-----SLQDVSGKAQV 338
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERledrRERLQQEIEELLKKLEEAELKELQAELEELEEELeelqeELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 339 LNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNE-----KAQLQI 413
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 414 HLDHLILEHNQCLQKSQEAEKrtvvQKELLESTIARLQGELKASLQEKkslleknewfQREVNKTEKEVAKEKCNLEKEL 493
Cdd:TIGR02168 546 RLQAVVVENLNAAKKAIAFLK----QNELGRVTFLPLDSIKGTEIQGN----------DREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 494 AESKEDIN------VLNQNLQTLMEENKHLTNKM--ASLEHHKATSDY--QGKVEKALEKITDSKNMLAyekgKLQTKVK 563
Cdd:TIGR02168 612 PKLRKALSyllggvLVVDDLDNALELAKKLRPGYriVTLDGDLVRPGGviTGGSAKTNSSILERRREIE----ELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 564 QLEAQLHTfaetmlqkdhLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQ 643
Cdd:TIGR02168 688 ELEEKIAE----------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 644 KLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKERSLNQ 720
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 721 QRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKS-----------------LDITREDNRKLAMSLEQALQTNGHLQSKL 783
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseleallnerasleeaLALLRSELEELSEELRELESKRSELRREL 917
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730346 784 DHLQEKLESKERERQSLEA----FKEQVAEESKVEAELHAERIEalrkqfqtERETAKKASQREVSELKKALDE 853
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVridnLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
453-1048 |
9.46e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 9.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 453 ELKASLQEKKSLLEKNEWFQREVNKTEkevakekcnLEKELAESKEDINVLNQNLQTLmeENKHLTNKMASLEHHKATSD 532
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEE---------LEAELEELEAELEELEAELAEL--EAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 533 YQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEA 612
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 613 HLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQ 692
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL-----------EEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 693 GALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQA 772
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 773 LQTNGHLQSklDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALD 852
Cdd:COG1196 515 LLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 853 EANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNY 932
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 933 EQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEAS 1012
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590
....*....|....*....|....*....|....*.
gi 1039730346 1013 VESEQITANLEEAHRwfkcrfdglQLELTKNRLQRL 1048
Cdd:COG1196 753 LEELPEPPDLEELER---------ELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
530-878 |
1.72e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 530 TSDYQGKVEKALEKITDSKNMLayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL-EVKYTQANSELSASKAYLE 608
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 609 QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVgnfQKQLAEAKEDNCKVTIMLENVLASH 688
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 689 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEaqhgSEIEPLQKSLDITREDNRKLAMS 768
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 769 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqvaeeskveaelHAERIEALRKQFQTERETAK---KASQREVS 845
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNA---------------AIAGIEAKINELEEEKEDKAleiKKQEWKLE 458
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039730346 846 ELKKALDEANFR----SVEVSRANRELRHKATELEKV 878
Cdd:TIGR02169 459 QLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-902 |
5.95e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 131 DQLNIIQGEHSKGLKLLQLEVmNLRQQLKVVKEEEDRAQ-----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL 205
Cdd:TIGR02168 189 DRLEDILNELERQLKSLERQA-EKAERYKELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 206 KIQELRRQlaqeklvRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDlgmtis 285
Cdd:TIGR02168 268 KLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE------ 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 286 qLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIi 365
Cdd:TIGR02168 335 -LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 366 aehqailkveQKMITETFQEQNLLLDAAHasiTGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLES 445
Cdd:TIGR02168 413 ----------EDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 446 TIARLQgELKASLQEKKSLLEKNEWFQREVNKTEKE---------VAKEKCNLEKELAESKEdiNVLNQNLQTLMEENKH 516
Cdd:TIGR02168 480 AERELA-QLQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgVLSELISVDEGYEAAIE--AALGGRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 517 LTNK-MASLEHHKA---------TSDYQGKVEKALEKITDSKNMLAYEKgKLQTKVKQLEAQLHTF------AETMLQKD 580
Cdd:TIGR02168 557 AAKKaIAFLKQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlggvlvVDDLDNAL 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 581 HLHKLNKALEVKYTQANSELSASKAYL---EQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES 657
Cdd:TIGR02168 636 ELAKKLRPGYRIVTLDGDLVRPGGVITggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 658 KKvgnfQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM 737
Cdd:TIGR02168 716 QL----RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 738 LIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL 817
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 818 HAERIEAL--RKQFQTERETAKKASQREVSELKKALDeanfrsvEVSRANRELRHKATELEKVVNsNKEKLKNQRAQIKL 895
Cdd:TIGR02168 872 ESELEALLneRASLEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLEL-RLEGLEVRIDNLQE 943
|
....*..
gi 1039730346 896 HLSAKAN 902
Cdd:TIGR02168 944 RLSEEYS 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
769-1042 |
9.07e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 9.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 769 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQF-QTERETAKKasQREVSEL 847
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 848 KKALDEANFRSVEVSR----ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQMEI 922
Cdd:TIGR02169 257 TEEISELEKRLEEIEQlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 923 IKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKmrlELENRCKELEETIRHLKRCKE 1002
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKREINELKRELDRLQE 413
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039730346 1003 ATEnKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTK 1042
Cdd:TIGR02169 414 ELQ-RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-1025 |
1.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 390 LDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKR---------TVVQKEL--LESTIARLQGELKASL 458
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 459 QEKKSLLEKNEWFQREVNKTEKEVAkekcNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE-HHKATSDYQGKV 537
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 538 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetmlqkdhlhklnkalevkyTQANSELSASKAYLEQTEAHLKEM 617
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEEL------------------------ADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 618 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 697
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 698 VQiELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG-------SEIEPLQKSLDITRED--------- 761
Cdd:TIGR02169 527 VA-QLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdl 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 762 ---NRKLAMSLEQALQTNG---HLQSKLDHLQE----KLESKERERQSL-------EAFKEQVAEESKVEAELHAERIEA 824
Cdd:TIGR02169 606 vefDPKYEPAFKYVFGDTLvveDIEAARRLMGKyrmvTLEGELFEKSGAmtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 825 LRKQfqteretaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 904
Cdd:TIGR02169 686 LKRE--------LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 905 QNMERMKQiEMELRQMEIIKDQYQKKNYEQSLS---IQRFVSEMNTLQKEM----------------ELLTKSQYETSAR 965
Cdd:TIGR02169 758 SELKELEA-RIEELEEDLHKLEEALNDLEARLShsrIPEIQAELSKLEEEVsriearlreieqklnrLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730346 966 NKQQELRLVAERKMRL-------------------ELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIekeienlngkkeeleeeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
489-1020 |
2.28e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 489 LEKELAESKEDINVLNQNLQTLME--------ENKHLTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 560
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 561 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 633
Cdd:pfam15921 325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 634 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 713
Cdd:pfam15921 395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 714 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 787
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 788 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 867
Cdd:pfam15921 545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 868 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKnyEQSLS-IQRFVSEMN 946
Cdd:pfam15921 599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQER--DQLLNeVKTSRNELN 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730346 947 TLQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 1020
Cdd:pfam15921 671 SLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
786-1059 |
5.82e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 786 LQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQtERETAKKASQREVSELKKALDEANFRSVEVSRAN 865
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 866 RELRHKATELEKVVNSNKEKLKNQRAQIKLHlsakannaqnMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEM 945
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIL----------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 946 NTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIrhlkrckEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-------ASLNNEIERLEARLERLEDRRERL 419
|
250 260 270
....*....|....*....|....*....|....
gi 1039730346 1026 HRWFKCRFDGLQLELTKNRLQRLPREDRWLEENQ 1059
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
699-1018 |
7.39e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 7.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 699 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 778
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 779 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 858
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 859 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 932
Cdd:PTZ00121 1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 933 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 1010
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543
|
....*...
gi 1039730346 1011 ASVESEQI 1018
Cdd:PTZ00121 1544 EKKKADEL 1551
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
477-1024 |
1.58e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHK----ATSDYQGKVEKALEKITDSKNMLA 552
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKeeieELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 553 YEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAV 632
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 633 KCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGL 712
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 713 KKE---------------RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQK---SLDITREDNRKLaMSLEQALQ 774
Cdd:PRK03918 425 KKAieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLKKESEL-IKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 775 TNGHLQSKLD-HLQEKLESKERERQSL-EAFKEQVAEESKVEAELhaERIEALRKQfQTERETAKKASQREVSELKKALD 852
Cdd:PRK03918 504 QLKELEEKLKkYNLEELEKKAEEYEKLkEKLIKLKGEIKSLKKEL--EKLEELKKK-LAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 853 EANFRSV-EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKN 931
Cdd:PRK03918 581 ELGFESVeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 932 YEQ-SLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN------RCKELEETIRHLKrcKEAT 1004
Cdd:PRK03918 661 YEElREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYK--ALLK 738
|
570 580
....*....|....*....|
gi 1039730346 1005 ENKLKEASVESEQITANLEE 1024
Cdd:PRK03918 739 ERALSKVGEIASEIFEELTE 758
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
681-876 |
2.03e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 681 LENVLASHSKMQGALEKVQ-IELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQhgseieplqkslditR 759
Cdd:COG4913 254 LEPIRELAERYAAARERLAeLEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR---------------L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 760 EDNRKLAMSLEQALQTNG-----HLQSKLDHLQEKLESKERERQSLEAFKEQVaeesKVEAELHAERIEALRKQFQTERE 834
Cdd:COG4913 319 DALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730346 835 TAKkasqREVSELKKALDEAnfrSVEVSRANRELRHKATELE 876
Cdd:COG4913 395 ALE----EELEALEEALAEA---EAALRDLRRELRELEAEIA 429
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
427-1017 |
2.09e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 427 QKSQEAEKRTVVQK--ELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLN 504
Cdd:PTZ00121 1176 KKAEAARKAEEVRKaeELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 505 QNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETmlQKDHLHK 584
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 585 LNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAvkcRDAALKESQKLKGDLKALEDRESKKVGNFQ 664
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 665 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERSLNQQRVQKLEAEvdqwQARMLIVEAQH 744
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKAD----EAKKKAEEAKK 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 745 GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL------- 817
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekk 1564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 818 ---HAERIEALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsnKEKLKNQRAQIk 894
Cdd:PTZ00121 1565 kaeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-----AEEEKKKVEQL- 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 895 lhlsaKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYEtsaRNKQQELRLV 974
Cdd:PTZ00121 1639 -----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKK 1710
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1039730346 975 AERKMRLELENRCKELEETIR--HLKRCKEATENKLKEASVESEQ 1017
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
322-877 |
2.84e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 322 LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNllldaAHASITGEL 401
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-----DIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 402 QAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEwfqrevnkTEKE 481
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE--------ELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 482 VAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTK 561
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE--EALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 562 VKQLEAQLHTFAETMLQKDHLH-KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALK 640
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLeELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 641 ESQKLKGDLKALEDRES-KKVGNFQKQLAEAkedncKVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERSLN 719
Cdd:COG1196 542 AALAAALQNIVVEDDEVaAAAIEYLKAAKAG-----RATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 720 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 799
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 800 LEAFKEQVAEESKVEAELHAERI-EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRE-LRHKATELEK 877
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLeEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLER 774
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-1024 |
5.41e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.82 E-value: 5.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 349 ELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHL--ILEHNQCL 426
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 427 QKSQEAEKRTVVQKELLESTIARLQ----------------GELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLE 490
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEetqerinrarkaaplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 491 KELaeSKEDINVLNQNLQTLMEENKHLTNKMASLEHH--KATSDYQG--KVEKALEKITDSKNMLAYEKGKLQTKVKQLE 566
Cdd:TIGR00618 336 QQS--SIEEQRRLLQTLHSQEIHIRDAHEVATSIREIscQQHTLTQHihTLQQQKTTLTQKLQSLCKELDILQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 567 AQLHTFAETMLQKDHLHKLNKA-------LEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAL 639
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELqqryaelCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 640 KESQKLKGDLKALEDRESKKvgNFQKQLAEAKEDNCKVTIMLENvlaSHSKMQGALEKVQIELGRRDSEIAGLKKERSLN 719
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHP--NPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 720 QQRVQKLEAEVDQWQARMLIVEaQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 799
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 800 LEAFKEQVAEEskvEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDeanfrsvevsranrELRHKATELEKVV 879
Cdd:TIGR00618 648 LHALQLTLTQE---RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE--------------MLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 880 NSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELrqMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQ 959
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 960 YETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 1024
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
447-991 |
6.14e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 447 IARLQGELKASLQEKKSLLEKNEwfqrevnktEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEEnkhLTNKMASLEH 526
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKE---------EKDLHERLNGLESELAELDEEIERYEEQREQARET---RDEADEVLEE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 527 HKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfaetmlqkdhlhklnkaLEVKYTQANSELSASKAY 606
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE-----------------LEEERDDLLAEAGLDDAD 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 607 LEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKK---VGNFQKQLAEAKEDNCKVTIMLEN 683
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 684 VLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQwqARMLIVEAQH----------GSEIE--PL 751
Cdd:PRK02224 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT--ARERVEEAEAlleagkcpecGQPVEgsPH 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 752 QKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLqEKLESKERERQSLEAFKEQVAE---ESKVEAELHAERIEALRKQ 828
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 829 -------FQTERETAKKASQR------EVSELKKALDEANFRsVEVSRANRELRHKATELEKVVNSNKEKLKNQRA---Q 892
Cdd:PRK02224 546 aaeleaeAEEKREAAAEAEEEaeeareEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAElndE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 893 IKLHLSAKAnnaqnmERMKQIEMELRQMEIIKDQYQKKNYEQSLS-----IQRFVSEMNTLQKEMelltksqyeTSARNK 967
Cdd:PRK02224 625 RRERLAEKR------ERKRELEAEFDEARIEEAREDKERAEEYLEqveekLDELREERDDLQAEI---------GAVENE 689
|
570 580
....*....|....*....|....
gi 1039730346 968 QQELRLVAERkmRLELENRCKELE 991
Cdd:PRK02224 690 LEELEELRER--REALENRVEALE 711
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
719-906 |
7.50e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 7.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 719 NQQRVQKLEAEVDQWQARMLIVEAQhGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGhLQSKLDHLQEKLESKERERQ 798
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 799 SLEAFKEQVAEESKVEAELHAERIEALRKQFQTEREtaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 878
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180
....*....|....*....|....*...
gi 1039730346 879 VNSNKEKLKNQRAQiklhLSAKANNAQN 906
Cdd:COG4913 764 ERELRENLEERIDA----LRARLNRAEE 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-811 |
1.78e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 479 EKEVAKEKCN-LEKELAESKEDINVLNQNLQTLMEENKH------LTNKMASLEHHKATSDYQgKVEKALEKITDSKNML 551
Cdd:TIGR02169 171 KKEKALEELEeVEENIERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEGYELLKEKE-ALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 552 AYEKGKLQTKVKQLEAQLHTFAETMlqKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQA 631
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLL--EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 632 VKCRDAALKESQKLKGDLKaledRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAG 711
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 712 LKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG---SEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQE 788
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340
....*....|....*....|...
gi 1039730346 789 KLESKERERQSLEAFKEQVAEES 811
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERV 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
384-921 |
1.80e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 384 QEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRtvvQKELLESTIARLQGELKASLQEKKS 463
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 464 LLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQN-------LQTLMEENKHLTNKMASLEHHKatSDYQGK 536
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaeaaLRDLRRELRELEAEIASLERRK--SNIPAR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 537 VEKALEKITDSknmLAYEKGKLQ-----TKVKQLEAQ--------LHTFAETML-QKDHLHKLNKALE------------ 590
Cdd:COG4913 442 LLALRDALAEA---LGLDEAELPfvgelIEVRPEEERwrgaiervLGGFALTLLvPPEHYAAALRWVNrlhlrgrlvyer 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 591 VKYTQANSELSASKA--YLEQTEAHLKEMKSILgknEEELAQ---AVKCRDA-ALKESQ---------KLKGDLKALEDR 655
Cdd:COG4913 519 VRTGLPDPERPRLDPdsLAGKLDFKPHPFRAWL---EAELGRrfdYVCVDSPeELRRHPraitragqvKGNGTRHEKDDR 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 656 ES------------KKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQGALEKVQIELGRRDSEIAGLkKERSLNQQRV 723
Cdd:COG4913 596 RRirsryvlgfdnrAKLAALEAELAELEEE-----------LAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 724 QKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF 803
Cdd:COG4913 664 ASAEREIAELEAELERLDASS-DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 804 KEQVAE---ESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEAN----FRSVEVSRANRELRHKATELE 876
Cdd:COG4913 743 ARLELRallEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD 822
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 877 KVVNSN----KEKLKNQRA----QIKLHLSAKANNAQNM--ERMKQIEMELRQME 921
Cdd:COG4913 823 RLEEDGlpeyEERFKELLNensiEFVADLLSKLRRAIREikERIDPLNDSLKRIP 877
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
139-728 |
2.60e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 139 EHSKGLKLLQLEVMNLRqqLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEK 218
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 219 LVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLI 298
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 299 cklvEENKATQISLKKEHEENiyLKSEILSLQDVSGKAQVLNDQLskkcSELTSMLQVVKMENSRIIAEHQAILKVEQKM 378
Cdd:COG1196 375 ----AEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 379 ITEtfQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLilehnqcLQKSQEAEKRTVVQKELLESTIARLQGELKASL 458
Cdd:COG1196 445 EEA--AEEEAELEEEEEALLELLAELLEEAALLEAALAEL-------LEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 459 QEKKSLLEknewfQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENK-HLTNKMASLEHHKATSDYQGKV 537
Cdd:COG1196 516 LAGLRGLA-----GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 538 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEM 617
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 618 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 697
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580 590
....*....|....*....|....*....|.
gi 1039730346 698 VQIELGRRDSEIAGLKKERSLNQQRVQKLEA 728
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
721-1026 |
5.13e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 721 QRVQKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLditREDNRKLAMSLEQALQTNGHLQSKLDHLQEKL-ESKERERQS 799
Cdd:pfam12128 234 AGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWkEKRDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 800 LEAFKEQVAEeskveAELHAERIEALRKQFQTERETAKKASQR-------EVSELKKALDEANFRSVEVSRANRELRHKA 872
Cdd:pfam12128 310 LSAADAAVAK-----DRSELEALEDQHGAFLDADIETAAADQEqlpswqsELENLEERLKALTGKHQDVTAKYNRRRSKI 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 873 TE-LEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvseMNTLQKE 951
Cdd:pfam12128 385 KEqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-----LNQATAT 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730346 952 MELLTksqyetsarnkQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATEN---KLKEASVESEQITANLEEAH 1026
Cdd:pfam12128 460 PELLL-----------QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELE 526
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
450-645 |
5.30e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 5.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 450 LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKmaslehhka 529
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 530 tsdyQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKA 605
Cdd:pfam07888 103 ----YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERetelERMKERAKKAGAQRKEEEAERKQLQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1039730346 606 YLEQTEAHL----KEMKSILGKNEEELAQAVKCRDAALKESQKL 645
Cdd:pfam07888 179 KLQQTEEELrslsKEFQELRNSLAQRDTQVLQLQDTITTLTQKL 222
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
692-955 |
6.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 692 QGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLiveaQHGSEIEPLQKSLDITREDNRKLAMSLEQ 771
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 772 ALQTNGHLQSKLDHLQEKLESKERERQSL----EAFKEQVAEESKVEAELHaERIEALRKQFQTERetakkasqREVSEL 847
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELkeelESLEAELEELEAELEELE-SRLEELEEQLETLR--------SKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 848 KKALDEANfrsVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEME--LRQMEIIKD 925
Cdd:TIGR02168 392 ELQIASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErlEEALEELRE 468
|
250 260 270
....*....|....*....|....*....|
gi 1039730346 926 QYQKKNYEqslsIQRFVSEMNTLQKEMELL 955
Cdd:TIGR02168 469 ELEEAEQA----LDAAERELAQLQARLDSL 494
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
181-970 |
7.56e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 181 IATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALH 260
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 261 SSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISlKKEHEENIylkSEILSLQDVSGKAQVln 340
Cdd:PTZ00121 1168 EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR-KAEDAKKA---EAVKKAEEAKKDAEE-- 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 341 dqlSKKCSELTSMLQVVKMENSRI--IAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQ--NEKAQLQIHLD 416
Cdd:PTZ00121 1242 ---AKKAEEERNNEEIRKFEEARMahFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADeaKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 417 HLILEHNQCLQKSQEAEKRTVVQKELLEstIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAES 496
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAE--AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 497 K---EDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKAleKITDSKNMLAYEKGKLQTKVKQLEA-----Q 568
Cdd:PTZ00121 1397 KkkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEakkadE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 569 LHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEelaqAVKCRDAALKESQKLKGD 648
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADE 1550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 649 LKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEa 728
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE- 1629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 729 EVDQWQARMLIVEAQHGSEIEPLQKSLDITR-----------EDNRKLamslEQALQTNGHLQSKLDHLQEKLEskerER 797
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaeeakkaeEDKKKA----EEAKKAEEDEKKAAEALKKEAE----EA 1701
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 798 QSLEAFKEQVAEESKveaelhaeRIEALRKQFQTERETAKKASQREVSELKKAldeanfrsvEVSRANRELRHKATELEK 877
Cdd:PTZ00121 1702 KKAEELKKKEAEEKK--------KAEELKKAEEENKIKAEEAKKEAEEDKKKA---------EEAKKDEEEKKKIAHLKK 1764
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 878 VVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTL--QKEMELL 955
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVadSKNMQLE 1844
|
810
....*....|....*
gi 1039730346 956 TKSQYETSARNKQQE 970
Cdd:PTZ00121 1845 EADAFEKHKFNKNNE 1859
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
180-843 |
1.42e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 180 EIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSassmllkVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKE-------LKHLREALQQTQQSHAYLTQKREAQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 260 HSSMKtTQDLLAQEQRKNEDLGMTISQLkSDLNSRDNLICK---LVEENKATQISLKKEHEENIYLKSEILSLQDVSGKA 336
Cdd:TIGR00618 253 EEQLK-KQQLLKQLRARIEELRAQEAVL-EETQERINRARKaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 337 QVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQK-------MITETFQEQNLLLDAAHASITGELQAVQNEKA 409
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIScqqhtltQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 410 Q----------LQIHLDHliLEHNQCLQKSQEAEKRTVVQKELLESTIA-RLQGELKASLQEKKSLLEKNEWFQREVNKT 478
Cdd:TIGR00618 411 TidtrtsafrdLQGQLAH--AKKQQELQQRYAELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 479 EKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKL 558
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 559 QTKVKQLEAQLHTFAETMlqkDHLHKLNKALEvKYTQANSELSASKAYLE-------QTEAHLKEMKSILGKNEEELAQA 631
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDI---PNLQNITVRLQ-DLTEKLSEAEDMLACEQhallrklQPEQDLQDVRLHLQQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 632 VKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCK--VTIMLENVLASHSKMQGALEKV--------QIE 701
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKeqLTYWKEMLAQCQTLLRELETHIeeydrefnEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 702 LGRRdSEIAGLKKERSLNQQRVQKLEAEVDqWQARMLIVEAQHGSEIEPLQKSLDITRED--------NRKLAMSLEQAL 773
Cdd:TIGR00618 725 NASS-SLGSDLAAREDALNQSLKELMHQAR-TVLKARTEAHFNNNEEVTAALQTGAELSHlaaeiqffNRLREEDTHLLK 802
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730346 774 QTNGHLQSKLDH-LQEKLESKERERQSLEAFKEQVAEESKVEAELHAE--RIEALRKQFQTERETAKKASQRE 843
Cdd:TIGR00618 803 TLEAEIGQEIPSdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
101-525 |
1.79e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 101 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 179
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 180 EIATETKKNAAVIEEELKTTKRKMNLKIQELrrqlAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL----TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 260 HSSM---KTTQDLLAQEQRKNEDLGMTIS---QLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVS 333
Cdd:pfam15921 530 LQELqhlKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRLEL 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 334 GKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASI 397
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNK 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 398 TGELQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVN 476
Cdd:pfam15921 687 SEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNAN 761
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039730346 477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 525
Cdd:pfam15921 762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
439-730 |
1.89e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 439 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKcnleKELAESKEDINVLNQNLQTLMEENKHLT 518
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 519 NKMASLEHHKAtsdyqgKVEKALEKITDSKNMlayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANS 598
Cdd:TIGR02169 765 ARIEELEEDLH------KLEEALNDLEARLSH-----SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 599 ELSASKAYLEQTEAHLKEMKS---ILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNC 675
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKeieNLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 676 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLnQQRVQKLEAEV 730
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEI 967
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
496-860 |
1.92e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 496 SKEDINVLNQNLQTLMEENKHLTNKMA---SLEHHKATS---DYQGKVEKALEKITDSKNmlayekgKLQTKVKQLEA-- 567
Cdd:PLN02939 54 IAPKQRSSNSKLQSNTDENGQLENTSLrtvMELPQKSTSsddDHNRASMQRDEAIAAIDN-------EQQTNSKDGEQls 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 568 --QLHTFAEtMLQ--KDHLHKLNKALEVKYTQANSELSASKAYleQTEAHLKEMKsiLGKNEEELAQAVKCR-DAALKES 642
Cdd:PLN02939 127 dfQLEDLVG-MIQnaEKNILLLNQARLQALEDLEKILTEKEAL--QGKINILEMR--LSETDARIKLAAQEKiHVEILEE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 643 Q--KLKGDLKALEDRESKKVGNFQKQLAEAKEDNckvtIMLENVLAshskmqgALEKVQIELGRRDSEIAGLKKERSLNQ 720
Cdd:PLN02939 202 QleKLRNELLIRGATEGLCVHSLSKELDVLKEEN----MLLKDDIQ-------FLKAELIEVAETEERVFKLEKERSLLD 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 721 QRVQKLE-----AEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQalqtNGHLQSKLDHLQEKLEsker 795
Cdd:PLN02939 271 ASLRELEskfivAQEDVSKLSPLQYDCWW-EKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLK---- 341
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730346 796 erqsleafKEQVAEESKVEAELHAERIEALRKQFQT---ERETAKKASQREVSE----LKKALDEANFRSVE 860
Cdd:PLN02939 342 --------EANVSKFSSYKVELLQQKLKLLEERLQAsdhEIHSYIQLYQESIKEfqdtLSKLKEESKKRSLE 405
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
701-1010 |
3.04e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 701 ELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQalqtnghLQ 780
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 781 SKLDHLQEKLESKERERQSLEAFKEQVaEESKVEAELHAERIEA-LRKQFQTERETAKKASQREVSELKKALDEANFRSV 859
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEEL-EEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 860 EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLhlsAKANNAQNMERMKQIEMELRQMEiikdqyqkknyeqslsiq 939
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN---LNGKKEELEEELEELEAALRDLE------------------ 881
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730346 940 rfvSEMNTLQKEMELLtKSQYEtSARNKQQELRLVAERKmrlelENRCKELEETIrhlkrckEATENKLKE 1010
Cdd:TIGR02169 882 ---SRLGDLKKERDEL-EAQLR-ELERKIEELEAQIEKK-----RKRLSELKAKL-------EALEEELSE 935
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
175-732 |
3.37e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 175 LTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQE 254
Cdd:pfam05483 196 ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 255 KCTALHSSMKTTQDLLAQEQRKNEDLGMTISQ-------LKSDLNSRDNLICKLVEENKATQISLKKEHEENIY------ 321
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstqkaLEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFvvtefe 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 322 ---------LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIiAEHQAILKVEQKMITETFQEQNLL--L 390
Cdd:pfam05483 356 attcsleelLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-EELKKILAEDEKLLDEKKQFEKIAeeL 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 391 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekRTVVQKELLESTiaRLQGELKASLQEKKSLLEKNEW 470
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL--KTELEKEKLKNI--ELTAHCDKLLLENKELTQEASD 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 471 FQREVNKTEKEVAKEKCNLEKELaeskedinvlnQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNM 550
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERML-----------KQIENLEEKEMNLRDELESVR--EEFIQKGDEVKCKLDKSEENARS 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 551 LAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGK--- 623
Cdd:pfam05483 578 IEYEVLKKEKQMKILENKCNNLKKQIENKnkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiid 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 624 -----------NEEELAQAVKCRDAALKESQKLKgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLA----SH 688
Cdd:pfam05483 658 nyqkeiedkkiSEEKLLEEVEKAKAIADEAVKLQ---KEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyknKE 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1039730346 689 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQ 732
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
687-1017 |
5.70e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 5.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 687 SHSKMQGALEKVQIELGRRDseiaglKKERSLNQQRVQKLEAEVDQWQA---RMLIVEAQHGSEIEPLQKSLDITREDNR 763
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAemdRQAAIYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 764 KLAMSL--EQALQTNGHLQSKLDHLQ-EKLESKERERQSLEAfkeqvAEESKVEAELHAERIEALRKQFQTERETAKKAS 840
Cdd:pfam17380 359 KRELERirQEEIAMEISRMRELERLQmERQQKNERVRQELEA-----ARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 841 QREVSELKKAldeanfRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQiEMELRQM 920
Cdd:pfam17380 434 QREVRRLEEE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-ELEERKQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 921 EIIKDQYQKKnyeqslsiqrfvsemnTLQKEMELLTKSQYETSARNKQQELRlvaerkmrleleNRCKELEETIRHLKRC 1000
Cdd:pfam17380 507 AMIEEERKRK----------------LLEKEMEERQKAIYEEERRREAEEER------------RKQQEMEERRRIQEQM 558
|
330
....*....|....*..
gi 1039730346 1001 KEATENKLKEASVESEQ 1017
Cdd:pfam17380 559 RKATEERSRLEAMERER 575
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
114-860 |
1.09e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 114 HLQTEKESNPQKTAFLNDQLNIIQGEHSKGLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIE 193
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 194 EELKTTKRKM----NLKIQELRRQLaqekLVRESLETSASSMLLKVQEmgsvveAERQQVHALQEKCTALHSSMKTTQDL 269
Cdd:pfam15921 155 EAAKCLKEDMledsNTQIEQLRKMM----LSHEGVLQEIRSILVDFEE------ASGKKIYEHDSMSTMHFRSLGSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 270 LAQEqrknedLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENI--YLKSEILSLQDVSGKAQVLNDQLSKKC 347
Cdd:pfam15921 225 ILRE------LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIeqLISEHEVEITGLTEKASSARSQANSIQ 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 348 SELTSMLQVVKMENSRIIAEHQAI------LKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILE 421
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLestvsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 422 HNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELA------E 495
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAaiqgknE 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 496 SKEDINVLNQNLQTLMEENK----HLTNKMASLEHHKAT-SDYQGKVEKAlEKITDSKNMlayEKGKLQTKVkqlEAQLH 570
Cdd:pfam15921 459 SLEKVSSLTAQLESTKEMLRkvveELTAKKMTLESSERTvSDLTASLQEK-ERAIEATNA---EITKLRSRV---DLKLQ 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 571 TFAETMLQKDHLHKLN---KALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQklkg 647
Cdd:pfam15921 532 ELQHLKNEGDHLRNVQtecEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ---- 607
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 648 DLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQ--RVQK 725
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfRNKS 687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 726 LEAEVDQWQARMLIVEAQhgSEIEPLQ---KSLDITREDNRKLAMSLEQALQTN----GHLQSKLDHLQEKLESKERERQ 798
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQ--SELEQTRntlKSMEGSDGHAMKVAMGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKH 765
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 799 SLEAFKEQVAEE-SKVEAELH--AERIEALRKQfqtERETAKKASQREVselkkALDEANFRSVE 860
Cdd:pfam15921 766 FLKEEKNKLSQElSTVATEKNkmAGELEVLRSQ---ERRLKEKVANMEV-----ALDKASLQFAE 822
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
167-1026 |
1.26e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 167 RAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEmgsvVEAER 246
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKE----IEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 247 QQVHALQEKCTALHSSMKTTQDLLAQ-EQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSE 325
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSElELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 326 ILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKV---------------EQKMITETFQEQNLLL 390
Cdd:TIGR00606 342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERqiknfhtlvierqedEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 391 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEW 470
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 471 FQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNL----------QTLMEENKHLTNKMASL---------------- 524
Cdd:TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEmltkdkmdkdEQIRKIKSRHSDELTSLlgyfpnkkqledwlhs 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 525 --EHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSA 602
Cdd:TIGR00606 582 ksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 603 SKAYLE--------------------QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGN 662
Cdd:TIGR00606 662 TAVYSQfitqltdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 663 FQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRD------SEIAGLKKERSLNQQRVQKLEAEVDQWQAR 736
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 737 MLIVEAQHgsEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAE 816
Cdd:TIGR00606 822 RTVQQVNQ--EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 817 LHAE---------RIEALRKQFQTE-------RETAKKASQREVSELKKALDEANFRSVEVSR-----ANRELRHKATEL 875
Cdd:TIGR00606 900 LIREikdakeqdsPLETFLEKDQQEkeelissKETSNKKAQDKVNDIKEKVKNIHGYMKDIENkiqdgKDDYLKQKETEL 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 876 EKVVNSNKEKLKNQ-RAQIKLHLSAKANNAQNMER--------MKQIEMELRQMEIIKDQYQKKNYEQSLSIQRfvSEMN 946
Cdd:TIGR00606 980 NTVNAQLEECEKHQeKINEDMRLMRQDIDTQKIQErwlqdnltLRKRENELKEVEEELKQHLKEMGQMQVLQMK--QEHQ 1057
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 947 TLQKEMELLTKSQYETSARNKQ-QELRLVAERKMRlelENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR00606 1058 KLEENIDLIKRNHVLALGRQKGyEKEIKHFKKELR---EPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKF 1134
|
.
gi 1039730346 1026 H 1026
Cdd:TIGR00606 1135 H 1135
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
885-1060 |
1.35e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 885 KLKNQRAQIKLHLSAKANNAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSA 964
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 965 R---------------------NKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEA---SVESEQITA 1020
Cdd:TIGR02168 296 EisrleqqkqilrerlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLE 375
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730346 1021 NLEEAHRWFKCRFDGL--QLELTKNRLQRLPREDRWLEENQD 1060
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLelQIASLNNEIERLEARLERLEDRRE 417
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
426-644 |
1.35e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 426 LQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQ 505
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAE----AEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 506 NLQtlmeENKHLTNKMASLEHHKATSDYQGKVEkALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetMLQKDHLHKL 585
Cdd:COG3883 94 ALY----RSGGSVSYLDVLLGSESFSDFLDRLS-ALSKIADADADLLEELKADKAELEAKKAEL------EAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730346 586 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 644
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
488-847 |
1.65e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 488 NLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEH-HKATSDYQGKVEKAlekitdsknMLAYEKGK-----LQTK 561
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdYQAASDHLNLVQTA---------LRQQEKIEryqadLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 562 VKQLEAQLHTFAETMLQKDhlhklnkALEVKYTQANSELSASKAYL---------EQTEA--------HLKEMKSILGKN 624
Cdd:PRK04863 361 EERLEEQNEVVEEADEQQE-------ENEARAEAAEEEVDELKSQLadyqqaldvQQTRAiqyqqavqALERAKQLCGLP 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 625 EEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ--GALEKVQIEL 702
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 703 GRRDSEIAGLK--KERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNG 777
Cdd:PRK04863 513 EQLQQLRMRLSelEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 778 --------------HLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTEREtakKASQRE 843
Cdd:PRK04863 593 ariqrlaarapawlAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIE---RLSQPG 668
|
....
gi 1039730346 844 VSEL 847
Cdd:PRK04863 669 GSED 672
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
445-932 |
3.52e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 445 STIAR-LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCnleKELAESKEDINVLNQNLQTLMEENKHLTNKMAS 523
Cdd:COG4717 37 STLLAfIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEEL---KEAEEKEEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 524 LEHHKATSDYQGKVEKALEKITDSKNMLAyekgKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSAs 603
Cdd:COG4717 114 LREELEKLEKLLQLLPLYQELEALEAELA----ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSL- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 604 kayleQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDreSKKVGNFQKQLAEAKEDNCKVTIMLEN 683
Cdd:COG4717 189 -----ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN--ELEAAALEERLKEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 684 VLASHSKMQGALEK---VQIELGRRDSEIAGLKKERSLNQQRVQkleaEVDQWQARMLIVEAQHGSEIEPLQKSLDITRE 760
Cdd:COG4717 262 LGLGGSLLSLILTIagvLFLVLGLLALLFLLLAREKASLGKEAE----ELQALPALEELEEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 761 DNRKLAMSLEQALQtnghLQSKLDHLQEkleskERERQSLEAFKEQVAEESKVEAElhaERIEALRKQFQTERETakkas 840
Cdd:COG4717 338 ELLELLDRIEELQE----LLREAEELEE-----ELQLEELEQEIAALLAEAGVEDE---EELRAALEQAEEYQEL----- 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 841 QREVSELKKALDEANFRSVEVSRAN--RELRHKATELEKVVNSNKEKLKN---QRAQIKLHLSAKANNAQNMERMKQIEM 915
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEElreELAELEAELEQLEEDGELAELLQELEE 480
|
490
....*....|....*..
gi 1039730346 916 ELRQMEIIKDQYQKKNY 932
Cdd:COG4717 481 LKAELRELAEEWAALKL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
144-332 |
3.64e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRES 223
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 224 LETSASSMLLKVQEMGSVVEAERQQVHALQEKctalhssmkttqdlLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVE 303
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREK--------------LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
|
170 180 190
....*....|....*....|....*....|
gi 1039730346 304 ENKATQI-SLKKEHEENIYLKSEILSLQDV 332
Cdd:TIGR02168 958 ALENKIEdDEEEARRRLKRLENKIKELGPV 987
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
453-1009 |
3.73e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 453 ELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsd 532
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL--- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 533 yqgKVEKALEKITDSKNMLAYEKGKLQTKV---KQLEAQLHTFAEtmlQKDHLHKLNKALEVKYTQANSELSASKAYLEQ 609
Cdd:TIGR04523 184 ---NIQKNIDKIKNKLLKLELLLSNLKKKIqknKSLESQISELKK---QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 610 TEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdreSKKVGNFQKQLAEAKEDNCKVTIMLENVLASHS 689
Cdd:TIGR04523 258 LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKKLEEIQNQISQNN 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 690 KMQGALEkvqielgrrdSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLamsl 769
Cdd:TIGR04523 335 KIISQLN----------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI---- 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 770 EQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESK------VEAELHAERIEALRKQFQTERETAKKASQRE 843
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnqdSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 844 VSELKKAldeanfrsvevsraNRELRHKATELEKVvNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQME- 921
Cdd:TIGR04523 481 KQNLEQK--------------QKELKSKEKELKKL-NEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEd 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 922 -IIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRC 1000
Cdd:TIGR04523 546 eLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
....*....
gi 1039730346 1001 KEATENKLK 1009
Cdd:TIGR04523 626 NEKLSSIIK 634
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
144-330 |
4.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIAT----ETKKNAAVIEEELKTTKRKmnlkIQELRRQLA-QEK 218
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArrirALEQELAALEAELAELEKE----IAELRAELEaQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 219 LVRESLET-----------------SASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLG 281
Cdd:COG4942 105 ELAELLRAlyrlgrqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1039730346 282 MTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQ 330
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
155-279 |
4.69e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 155 RQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL-KIQELRRQLAQEKLVRESLETSASSMLL 233
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLEA 366
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1039730346 234 KVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNED 279
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
592-878 |
4.87e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 592 KYTQANSELSASKAYLEQTEAHLKEMKSIlgknEEELAQAVKCRDAALKEsqklkgDLKALEDRESKKVGNFQKQLAEAK 671
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDETL----IASRQEERQETSAELNQ------LLRTLDDQWKEKRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 672 EDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERSLNQQRVQKLEAEvdqWQARMLIVEAQHGSE 747
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRRSKIKEQNNRD 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 748 IEPLQKSLDITREDNRKLAMSLEQALQTnghLQSKL--DHLQEKLESKERERQSLEAFKE--------QVAEESKVEAEL 817
Cdd:pfam12128 392 IAGIKDKLAKIREARDRQLAVAEDDLQA---LESELreQLEAGKLEFNEEEYRLKSRLGElklrlnqaTATPELLLQLEN 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730346 818 HAERIEALRKQfQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 878
Cdd:pfam12128 469 FDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
140-482 |
4.88e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 140 HSKGLKLLQLEVMNLRQqLKVVKEE-EDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIqelrrqlaqek 218
Cdd:COG5022 767 ALKRIKKIQVIQHGFRL-RRLVDYElKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE----------- 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 219 lvRESLETSASSMLLKvQEMGSVVEAeRQQVHALQEKCTALHSSMKtTQDLLAQEQRKNEDLGmTISQLKSDLNSRDNLI 298
Cdd:COG5022 835 --TEEVEFSLKAEVLI-QKFGRSLKA-KKRFSLLKKETIYLQSAQR-VELAERQLQELKIDVK-SISSLKLVNLELESEI 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 299 CKLVEenkatqiSLKKEHEENIYLKSE-ILSLQDVSGKAQVLNDQLSKKCSEltSMLQVVKMENSRiIAEHQAILKVEQK 377
Cdd:COG5022 909 IELKK-------SLSSDLIENLEFKTElIARLKKLLNNIDLEEGPSIEYVKL--PELNKLHEVESK-LKETSEEYEDLLK 978
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 378 MITETFQEQN------LLLDAAHASITGELQAVQNEKAQLQiHLDHLILEHNQCLQKSQEA------EKRTVVQKELLES 445
Cdd:COG5022 979 KSTILVREGNkanselKNFKKELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSEstelsiLKPLQKLKGLLLL 1057
|
330 340 350
....*....|....*....|....*....|....*....
gi 1039730346 446 TIARLQGELKASLQEKKSLL--EKNEWFQREVNKTEKEV 482
Cdd:COG5022 1058 ENNQLQARYKALKLRRENSLldDKQLYQLESTENLLKTI 1096
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
607-1002 |
4.90e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 607 LEQTEAHLKEMKS-ILGKNEEELAQAVKCRDAALKEsqkLKGDLKALEDreskkvgnfQKQLAEAKEDNckvtimLENVL 685
Cdd:PRK02224 182 LSDQRGSLDQLKAqIEEKEEKDLHERLNGLESELAE---LDEEIERYEE---------QREQARETRDE------ADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 686 ASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM--LIVEAQHGS--------EIEPLQKSL 755
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDadaeaveaRREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 756 DITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqVAEESKVEAELHAERIEALRKQFQTERE- 834
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES----ELEEAREAVEDRREEIEELEEEIEELREr 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 835 -----TAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNK------------------------EK 885
Cdd:PRK02224 400 fgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedrervEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 886 LKNQRAQIKLHLSAKANNAQNMERMKQIEmelRQMEIIKDqyQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSAR 965
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAE---DRIERLEE--RREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1039730346 966 NKQ---QELRLVAERKMRL--ELENRCKELEETIRHLKRCKE 1002
Cdd:PRK02224 555 EKReaaAEAEEEAEEAREEvaELNSKLAELKERIESLERIRT 596
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
443-847 |
5.47e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 443 LESTIARLQGELKaSLQEKKSLLEKNEWFQREVNKTEKEvakekcnLEKELAESKEDINVLNQNLQtLMEENKHLTNKMA 522
Cdd:PRK03918 312 IEKRLSRLEEEIN-GIEERIKELEEKEERLEELKKKLKE-------LEKRLEELEERHELYEEAKA-KKEELERLKKRLT 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 523 SLEHHKATSDYQgKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAET---------MLQKDHLHKLNKALEVKY 593
Cdd:PRK03918 383 GLTPEKLEKELE-ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrELTEEHRKELLEEYTAEL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 594 TQANSELSASKAYLEQTEAHLKEMKSILGK------------------------NEEELAQAVKCRDAALKESQKLKGDL 649
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELRELEKVLKKeseliklkelaeqlkeleeklkkyNLEELEKKAEEYEKLKEKLIKLKGEI 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 650 KALEDrESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ-GALEKVQIELG------RRDSEIAGLKKERSLNQQR 722
Cdd:PRK03918 542 KSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKelepfyNEYLELKDAEKELEREEKE 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 723 VQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITR-EDNRKLAMSLEQALQTnghLQSKLDHLQEKLESKERerq 798
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEyEELREEYLELSRELAG---LRAELEELEKRREEIKK--- 694
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1039730346 799 SLEAFKEQVAEESKVEAELHA-----ERIEALRKQFQTERETAKKASQREVSEL 847
Cdd:PRK03918 695 TLEKLKEELEEREKAKKELEKlekalERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
432-644 |
5.78e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 432 AEKRTVVQKEL--LESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQNLQT 509
Cdd:COG4942 19 ADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 510 LMEENKHLTNKMASLEHHKATSDYQGKVEKAL--EKITDSKNMLAYEKG----------KLQTKVKQLEAQLHTFAETML 577
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYlaparreqaeELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039730346 578 QKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 644
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
366-696 |
5.99e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.44 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 366 AEHQAILKVEQKMITETfqEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEhnqcLQKSQEAEKRTVVQKELLES 445
Cdd:pfam19220 45 QAKSRLLELEALLAQER--AAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAA----LREAEAAKEELRIELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 446 TIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVL---NQNLQTLMEEN----KHLT 518
Cdd:pfam19220 119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKALQR----AEGELATARERLALLeqeNRRLQALSEEQaaelAELT 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 519 NKMASLE-----HHKATSDYQGKV-------EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfAETML--QKDHLHK 584
Cdd:pfam19220 195 RRLAELEtqldaTRARLRALEGQLaaeqaerERAEAQLEEAVEAHRAERASLRMKLEALTARAAA-TEQLLaeARNQLRD 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 585 L----------NKALEVKYTQANSELSASKAYLEQTEAHLKEM---KSILGKNEEELAQAVKCRDAALKESQ----KLKG 647
Cdd:pfam19220 274 RdeairaaerrLKEASIERDTLERRLAGLEADLERRTQQFQEMqraRAELEERAEMLTKALAAKDAALERAEeriaSLSD 353
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1039730346 648 DLKALEDRESKKVGNFQKQLAEAKEDnckvtimLENVLASHSKMQGALE 696
Cdd:pfam19220 354 RIAELTKRFEVERAALEQANRRLKEE-------LQRERAERALAQGALE 395
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
779-956 |
7.01e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.40 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 779 LQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQT--ERETAKKasqrEVSELKKALDEANF 856
Cdd:pfam05667 340 LQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTldLLPDAEE----NIAKLQALVDASAQ 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 857 RSVEVSR-----------ANRELRHKATELEKVVNSNKEKLKNQRAQIKlHLSAKAnnAQNMERMKQIEMEL-------- 917
Cdd:pfam05667 416 RLVELAGqwekhrvplieEYRALKEAKSNKEDESQRKLEEIKELREKIK-EVAEEA--KQKEELYKQLVAEYerlpkdvs 492
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039730346 918 ------RQMEIIKdQYQKknyeQSLSIQRFVSEMNTLQKEMELLT 956
Cdd:pfam05667 493 rsaytrRILEIVK-NIKK----QKEEITKILSDTKSLQKEINSLT 532
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
584-864 |
7.06e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 584 KLNKALeVKYTQANSELSASKAylEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES--KKVG 661
Cdd:PRK05771 54 KLSEAL-DKLRSYLPKLNPLRE--EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIErlEPWG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 662 NFqkqlaeakednckvTIMLENVLASHSkmqgalekVQIELGRRDSEIAGLKKERSlnQQRVQKLEAEVDQWQARMLIVE 741
Cdd:PRK05771 131 NF--------------DLDLSLLLGFKY--------VSVFVGTVPEDKLEELKLES--DVENVEYISTDKGYVYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 742 AQHGSEIEPLQKSLDITREDnrklamsleqaLQTNGHLQSKLDHLQEKLESKERERQS----LEAFKEQVAEESKVEAEL 817
Cdd:PRK05771 187 KELSDEVEEELKKLGFERLE-----------LEEEGTPSELIREIKEELEEIEKERESlleeLKELAKKYLEELLALYEY 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039730346 818 ---HAERIEALRKQFQTERETAKKA--SQREVSELKKALDEANFRSVEVSRA 864
Cdd:PRK05771 256 leiELERAEALSKFLKTDKTFAIEGwvPEDRVKKLKELIDKATGGSAYVEFV 307
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
534-654 |
8.14e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 39.66 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 534 QGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTF-AETMLQKDHLHKLNKALEVKYTQANSEL------------ 600
Cdd:cd22656 109 DEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFeNQTEKDQTALETLEKALKDLLTDEGGAIarkeikdlqkel 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346 601 -SASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAlkesQKLKGDLKALED 654
Cdd:cd22656 189 eKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADL----TAADTDLDNLLA 239
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
144-350 |
8.48e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 8.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 144 LKLLQLEVMNLRQQLKVVKEEEDRAQ----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQ--E 217
Cdd:PHA02562 183 IQTLDMKIDHIQQQIKTYNKNIEEQRkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKlnT 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 218 KLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQ--------EQRKNE--DLGMTISQL 287
Cdd:PHA02562 263 AAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKldtaidelEEIMDEfnEQSKKLLEL 342
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730346 288 KSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSgkaqvlnDQLSKKCSEL 350
Cdd:PHA02562 343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL-------DKIVKTKSEL 398
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
600-845 |
9.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 600 LSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdresKKVGNFQKQLAEAKEDnckvti 679
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAE------ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 680 mLENVLASHSKMQGALEKVQIELGRRDSEIaglkkERSLNQQRVQKLEAEVDQWQA-RMLIVEAQHGSEIEPLQKSLDIT 758
Cdd:COG4942 85 -LAELEKEIAELRAELEAQKEELAELLRAL-----YRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346 759 REDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKK 838
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1039730346 839 ASQREVS 845
Cdd:COG4942 239 AAERTPA 245
|
|
|