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Conserved domains on  [gi|1039730346|ref|XP_017168387|]
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coiled-coil domain-containing protein 150 isoform X2 [Mus musculus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
400-1027 2.61e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.24  E-value: 2.61e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  400 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 477
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  478 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 557
Cdd:TIGR02168  324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  558 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 637
Cdd:TIGR02168  402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  638 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 705
Cdd:TIGR02168  480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  706 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 756
Cdd:TIGR02168  557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  757 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 811
Cdd:TIGR02168  637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  812 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 876
Cdd:TIGR02168  716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  877 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 952
Cdd:TIGR02168  796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  953 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1027
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
CCDC158 super family cl37899
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
101-525 1.79e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


The actual alignment was detected with superfamily member pfam15921:

Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 1.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  101 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 179
Cdd:pfam15921  379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  180 EIATETKKNAAVIEEELKTTKRKMNLKIQELrrqlAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:pfam15921  454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL----TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK 529
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  260 HSSM---KTTQDLLAQEQRKNEDLGMTIS---QLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVS 333
Cdd:pfam15921  530 LQELqhlKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRLEL 606
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  334 GKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASI 397
Cdd:pfam15921  607 QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNK 686
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  398 TGELQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVN 476
Cdd:pfam15921  687 SEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNAN 761
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 525
Cdd:pfam15921  762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
400-1027 2.61e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.24  E-value: 2.61e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  400 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 477
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  478 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 557
Cdd:TIGR02168  324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  558 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 637
Cdd:TIGR02168  402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  638 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 705
Cdd:TIGR02168  480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  706 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 756
Cdd:TIGR02168  557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  757 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 811
Cdd:TIGR02168  637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  812 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 876
Cdd:TIGR02168  716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  877 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 952
Cdd:TIGR02168  796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  953 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1027
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
704-978 2.88e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 68.04  E-value: 2.88e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  704 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 783
Cdd:COG1196    236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  784 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 863
Cdd:COG1196    312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  864 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 943
Cdd:COG1196    387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1039730346  944 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 978
Cdd:COG1196    467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
489-1020 2.28e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 58.59  E-value: 2.28e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  489 LEKELAESKEDINVLNQNLQTLME--------ENKHLTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 560
Cdd:pfam15921  247 LEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  561 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 633
Cdd:pfam15921  325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  634 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 713
Cdd:pfam15921  395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  714 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 787
Cdd:pfam15921  465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  788 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 867
Cdd:pfam15921  545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  868 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKnyEQSLS-IQRFVSEMN 946
Cdd:pfam15921  599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQER--DQLLNeVKTSRNELN 670
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730346  947 TLQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 1020
Cdd:pfam15921  671 SLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
PTZ00121 PTZ00121
MAEBL; Provisional
699-1018 7.39e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 7.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  699 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 778
Cdd:PTZ00121  1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  779 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 858
Cdd:PTZ00121  1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  859 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 932
Cdd:PTZ00121  1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  933 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 1010
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543

                   ....*...
gi 1039730346 1011 ASVESEQI 1018
Cdd:PTZ00121  1544 EKKKADEL 1551
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
101-525 1.79e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 1.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  101 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 179
Cdd:pfam15921  379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  180 EIATETKKNAAVIEEELKTTKRKMNLKIQELrrqlAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:pfam15921  454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL----TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK 529
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  260 HSSM---KTTQDLLAQEQRKNEDLGMTIS---QLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVS 333
Cdd:pfam15921  530 LQELqhlKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRLEL 606
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  334 GKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASI 397
Cdd:pfam15921  607 QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNK 686
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  398 TGELQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVN 476
Cdd:pfam15921  687 SEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNAN 761
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 525
Cdd:pfam15921  762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
144-332 3.64e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 3.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRES 223
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  224 LETSASSMLLKVQEMGSVVEAERQQVHALQEKctalhssmkttqdlLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVE 303
Cdd:TIGR02168  892 LRSELEELSEELRELESKRSELRRELEELREK--------------LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
                          170       180       190
                   ....*....|....*....|....*....|
gi 1039730346  304 ENKATQI-SLKKEHEENIYLKSEILSLQDV 332
Cdd:TIGR02168  958 ALENKIEdDEEEARRRLKRLENKIKELGPV 987
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
144-330 4.05e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 4.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIAT----ETKKNAAVIEEELKTTKRKmnlkIQELRRQLA-QEK 218
Cdd:COG4942     29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArrirALEQELAALEAELAELEKE----IAELRAELEaQKE 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  219 LVRESLET-----------------SASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLG 281
Cdd:COG4942    105 ELAELLRAlyrlgrqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  282 MTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQ 330
Cdd:COG4942    185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
534-654 8.14e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 39.66  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  534 QGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTF-AETMLQKDHLHKLNKALEVKYTQANSEL------------ 600
Cdd:cd22656    109 DEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFeNQTEKDQTALETLEKALKDLLTDEGGAIarkeikdlqkel 188
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  601 -SASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAlkesQKLKGDLKALED 654
Cdd:cd22656    189 eKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADL----TAADTDLDNLLA 239
46 PHA02562
endonuclease subunit; Provisional
144-350 8.48e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 40.00  E-value: 8.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQ----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQ--E 217
Cdd:PHA02562   183 IQTLDMKIDHIQQQIKTYNKNIEEQRkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKlnT 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  218 KLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQ--------EQRKNE--DLGMTISQL 287
Cdd:PHA02562   263 AAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKldtaidelEEIMDEfnEQSKKLLEL 342
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730346  288 KSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSgkaqvlnDQLSKKCSEL 350
Cdd:PHA02562   343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL-------DKIVKTKSEL 398
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
400-1027 2.61e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.24  E-value: 2.61e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  400 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 477
Cdd:TIGR02168  254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  478 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 557
Cdd:TIGR02168  324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  558 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 637
Cdd:TIGR02168  402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  638 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 705
Cdd:TIGR02168  480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  706 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 756
Cdd:TIGR02168  557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  757 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 811
Cdd:TIGR02168  637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  812 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 876
Cdd:TIGR02168  716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  877 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 952
Cdd:TIGR02168  796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  953 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1027
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
704-978 2.88e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 68.04  E-value: 2.88e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  704 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 783
Cdd:COG1196    236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  784 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 863
Cdd:COG1196    312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  864 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 943
Cdd:COG1196    387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1039730346  944 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 978
Cdd:COG1196    467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
115-853 2.70e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 64.69  E-value: 2.70e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  115 LQTEKESNPQKTAFLNDQLNIIQGEhskgLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEE 194
Cdd:TIGR02168  237 LREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  195 ELKTTKRKMNLKIQELRRQL--AQEKLVR-----ESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALhssmkttQ 267
Cdd:TIGR02168  313 NLERQLEELEAQLEELESKLdeLAEELAEleeklEELKEELESLEAELEELEAELEELESRLEELEEQLETL-------R 385
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  268 DLLAQEQRKNEDLGMTISQLKSDLNS----RDNLICKLVEENKATQISLKKEHEENIYLKSEIL-----SLQDVSGKAQV 338
Cdd:TIGR02168  386 SKVAQLELQIASLNNEIERLEARLERledrRERLQQEIEELLKKLEEAELKELQAELEELEEELeelqeELERLEEALEE 465
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  339 LNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNE-----KAQLQI 413
Cdd:TIGR02168  466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiEAALGG 545
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  414 HLDHLILEHNQCLQKSQEAEKrtvvQKELLESTIARLQGELKASLQEKkslleknewfQREVNKTEKEVAKEKCNLEKEL 493
Cdd:TIGR02168  546 RLQAVVVENLNAAKKAIAFLK----QNELGRVTFLPLDSIKGTEIQGN----------DREILKNIEGFLGVAKDLVKFD 611
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  494 AESKEDIN------VLNQNLQTLMEENKHLTNKM--ASLEHHKATSDY--QGKVEKALEKITDSKNMLAyekgKLQTKVK 563
Cdd:TIGR02168  612 PKLRKALSyllggvLVVDDLDNALELAKKLRPGYriVTLDGDLVRPGGviTGGSAKTNSSILERRREIE----ELEEKIE 687
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  564 QLEAQLHTfaetmlqkdhLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQ 643
Cdd:TIGR02168  688 ELEEKIAE----------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  644 KLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKERSLNQ 720
Cdd:TIGR02168  758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERRIAATE 837
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  721 QRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKS-----------------LDITREDNRKLAMSLEQALQTNGHLQSKL 783
Cdd:TIGR02168  838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseleallnerasleeaLALLRSELEELSEELRELESKRSELRREL 917
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730346  784 DHLQEKLESKERERQSLEA----FKEQVAEESKVEAELHAERIEalrkqfqtERETAKKASQREVSELKKALDE 853
Cdd:TIGR02168  918 EELREKLAQLELRLEGLEVridnLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
453-1048 9.46e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 63.03  E-value: 9.46e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  453 ELKASLQEKKSLLEKNEWFQREVNKTEkevakekcnLEKELAESKEDINVLNQNLQTLmeENKHLTNKMASLEHHKATSD 532
Cdd:COG1196    217 ELKEELKELEAELLLLKLRELEAELEE---------LEAELEELEAELEELEAELAEL--EAELEELRLELEELELELEE 285
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  533 YQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEA 612
Cdd:COG1196    286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  613 HLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQ 692
Cdd:COG1196    366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL-----------EEALAELE 434
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  693 GALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQA 772
Cdd:COG1196    435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  773 LQTNGHLQSklDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALD 852
Cdd:COG1196    515 LLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  853 EANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNY 932
Cdd:COG1196    593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  933 EQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEAS 1012
Cdd:COG1196    673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
                          570       580       590
                   ....*....|....*....|....*....|....*.
gi 1039730346 1013 VESEQITANLEEAHRwfkcrfdglQLELTKNRLQRL 1048
Cdd:COG1196    753 LEELPEPPDLEELER---------ELERLEREIEAL 779
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
530-878 1.72e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 62.39  E-value: 1.72e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  530 TSDYQGKVEKALEKITDSKNMLayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL-EVKYTQANSELSASKAYLE 608
Cdd:TIGR02169  165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKE 240
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  609 QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVgnfQKQLAEAKEDNCKVTIMLENVLASH 688
Cdd:TIGR02169  241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKEREL 317
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  689 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEaqhgSEIEPLQKSLDITREDNRKLAMS 768
Cdd:TIGR02169  318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREK 393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  769 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqvaeeskveaelHAERIEALRKQFQTERETAK---KASQREVS 845
Cdd:TIGR02169  394 LEKLKREINELKRELDRLQEELQRLSEELADLNA---------------AIAGIEAKINELEEEKEDKAleiKKQEWKLE 458
                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1039730346  846 ELKKALDEANFR----SVEVSRANRELRHKATELEKV 878
Cdd:TIGR02169  459 QLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEA 495
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
131-902 5.95e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.46  E-value: 5.95e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  131 DQLNIIQGEHSKGLKLLQLEVmNLRQQLKVVKEEEDRAQ-----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL 205
Cdd:TIGR02168  189 DRLEDILNELERQLKSLERQA-EKAERYKELKAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  206 KIQELRRQlaqeklvRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDlgmtis 285
Cdd:TIGR02168  268 KLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE------ 334
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  286 qLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIi 365
Cdd:TIGR02168  335 -LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL- 412
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  366 aehqailkveQKMITETFQEQNLLLDAAHasiTGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLES 445
Cdd:TIGR02168  413 ----------EDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  446 TIARLQgELKASLQEKKSLLEKNEWFQREVNKTEKE---------VAKEKCNLEKELAESKEdiNVLNQNLQTLMEENKH 516
Cdd:TIGR02168  480 AERELA-QLQARLDSLERLQENLEGFSEGVKALLKNqsglsgilgVLSELISVDEGYEAAIE--AALGGRLQAVVVENLN 556
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  517 LTNK-MASLEHHKA---------TSDYQGKVEKALEKITDSKNMLAYEKgKLQTKVKQLEAQLHTF------AETMLQKD 580
Cdd:TIGR02168  557 AAKKaIAFLKQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlggvlvVDDLDNAL 635
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  581 HLHKLNKALEVKYTQANSELSASKAYL---EQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES 657
Cdd:TIGR02168  636 ELAKKLRPGYRIVTLDGDLVRPGGVITggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  658 KKvgnfQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM 737
Cdd:TIGR02168  716 QL----RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  738 LIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL 817
Cdd:TIGR02168  792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  818 HAERIEAL--RKQFQTERETAKKASQREVSELKKALDeanfrsvEVSRANRELRHKATELEKVVNsNKEKLKNQRAQIKL 895
Cdd:TIGR02168  872 ESELEALLneRASLEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLEL-RLEGLEVRIDNLQE 943

                   ....*..
gi 1039730346  896 HLSAKAN 902
Cdd:TIGR02168  944 RLSEEYS 950
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
769-1042 9.07e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 59.70  E-value: 9.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  769 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQF-QTERETAKKasQREVSEL 847
Cdd:TIGR02169  179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  848 KKALDEANFRSVEVSR----ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQMEI 922
Cdd:TIGR02169  257 TEEISELEKRLEEIEQlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLA 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  923 IKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKmrlELENRCKELEETIRHLKRCKE 1002
Cdd:TIGR02169  337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKREINELKRELDRLQE 413
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1039730346 1003 ATEnKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTK 1042
Cdd:TIGR02169  414 ELQ-RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
390-1025 1.85e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 58.93  E-value: 1.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  390 LDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKR---------TVVQKEL--LESTIARLQGELKASL 458
Cdd:TIGR02169  235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  459 QEKKSLLEKNEWFQREVNKTEKEVAkekcNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE-HHKATSDYQGKV 537
Cdd:TIGR02169  315 RELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkEFAETRDELKDY 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  538 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetmlqkdhlhklnkalevkyTQANSELSASKAYLEQTEAHLKEM 617
Cdd:TIGR02169  391 REKLEKLKREINELKRELDRLQEELQRLSEEL------------------------ADLNAAIAGIEAKINELEEEKEDK 446
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  618 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 697
Cdd:TIGR02169  447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  698 VQiELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG-------SEIEPLQKSLDITRED--------- 761
Cdd:TIGR02169  527 VA-QLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdl 605
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  762 ---NRKLAMSLEQALQTNG---HLQSKLDHLQE----KLESKERERQSL-------EAFKEQVAEESKVEAELHAERIEA 824
Cdd:TIGR02169  606 vefDPKYEPAFKYVFGDTLvveDIEAARRLMGKyrmvTLEGELFEKSGAmtggsraPRGGILFSRSEPAELQRLRERLEG 685
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  825 LRKQfqteretaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 904
Cdd:TIGR02169  686 LKRE--------LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  905 QNMERMKQiEMELRQMEIIKDQYQKKNYEQSLS---IQRFVSEMNTLQKEM----------------ELLTKSQYETSAR 965
Cdd:TIGR02169  758 SELKELEA-RIEELEEDLHKLEEALNDLEARLShsrIPEIQAELSKLEEEVsriearlreieqklnrLTLEKEYLEKEIQ 836
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730346  966 NKQQELRLVAERKMRL-------------------ELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR02169  837 ELQEQRIDLKEQIKSIekeienlngkkeeleeeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
489-1020 2.28e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 58.59  E-value: 2.28e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  489 LEKELAESKEDINVLNQNLQTLME--------ENKHLTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 560
Cdd:pfam15921  247 LEALKSESQNKIELLLQQHQDRIEqlisehevEITGLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  561 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 633
Cdd:pfam15921  325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  634 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 713
Cdd:pfam15921  395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  714 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 787
Cdd:pfam15921  465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  788 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 867
Cdd:pfam15921  545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  868 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKnyEQSLS-IQRFVSEMN 946
Cdd:pfam15921  599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQER--DQLLNeVKTSRNELN 670
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730346  947 TLQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 1020
Cdd:pfam15921  671 SLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
786-1059 5.82e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.37  E-value: 5.82e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  786 LQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQtERETAKKASQREVSELKKALDEANFRSVEVSRAN 865
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  866 RELRHKATELEKVVNSNKEKLKNQRAQIKLHlsakannaqnMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEM 945
Cdd:TIGR02168  277 SELEEEIEELQKELYALANEISRLEQQKQIL----------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  946 NTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIrhlkrckEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR02168  347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-------ASLNNEIERLEARLERLEDRRERL 419
                          250       260       270
                   ....*....|....*....|....*....|....
gi 1039730346 1026 HRWFKCRFDGLQLELTKNRLQRLPREDRWLEENQ 1059
Cdd:TIGR02168  420 QQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
PTZ00121 PTZ00121
MAEBL; Provisional
699-1018 7.39e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 7.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  699 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 778
Cdd:PTZ00121  1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  779 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 858
Cdd:PTZ00121  1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  859 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 932
Cdd:PTZ00121  1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  933 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 1010
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543

                   ....*...
gi 1039730346 1011 ASVESEQI 1018
Cdd:PTZ00121  1544 EKKKADEL 1551
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
477-1024 1.58e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 55.84  E-value: 1.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHK----ATSDYQGKVEKALEKITDSKNMLA 552
Cdd:PRK03918   186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKeeieELEKELESLEGSKRKLEEKIRELE 265
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  553 YEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAV 632
Cdd:PRK03918   266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  633 KCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGL 712
Cdd:PRK03918   345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  713 KKE---------------RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQK---SLDITREDNRKLaMSLEQALQ 774
Cdd:PRK03918   425 KKAieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLKKESEL-IKLKELAE 503
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  775 TNGHLQSKLD-HLQEKLESKERERQSL-EAFKEQVAEESKVEAELhaERIEALRKQfQTERETAKKASQREVSELKKALD 852
Cdd:PRK03918   504 QLKELEEKLKkYNLEELEKKAEEYEKLkEKLIKLKGEIKSLKKEL--EKLEELKKK-LAELEKKLDELEEELAELLKELE 580
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  853 EANFRSV-EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKN 931
Cdd:PRK03918   581 ELGFESVeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  932 YEQ-SLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN------RCKELEETIRHLKrcKEAT 1004
Cdd:PRK03918   661 YEElREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYK--ALLK 738
                          570       580
                   ....*....|....*....|
gi 1039730346 1005 ENKLKEASVESEQITANLEE 1024
Cdd:PRK03918   739 ERALSKVGEIASEIFEELTE 758
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
681-876 2.03e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 55.31  E-value: 2.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  681 LENVLASHSKMQGALEKVQ-IELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQhgseieplqkslditR 759
Cdd:COG4913    254 LEPIRELAERYAAARERLAeLEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR---------------L 318
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  760 EDNRKLAMSLEQALQTNG-----HLQSKLDHLQEKLESKERERQSLEAFKEQVaeesKVEAELHAERIEALRKQFQTERE 834
Cdd:COG4913    319 DALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLE 394
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039730346  835 TAKkasqREVSELKKALDEAnfrSVEVSRANRELRHKATELE 876
Cdd:COG4913    395 ALE----EELEALEEALAEA---EAALRDLRRELRELEAEIA 429
PTZ00121 PTZ00121
MAEBL; Provisional
427-1017 2.09e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 55.53  E-value: 2.09e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  427 QKSQEAEKRTVVQK--ELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLN 504
Cdd:PTZ00121  1176 KKAEAARKAEEVRKaeELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  505 QNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETmlQKDHLHK 584
Cdd:PTZ00121  1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKKADA 1333
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  585 LNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAvkcRDAALKESQKLKGDLKALEDRESKKVGNFQ 664
Cdd:PTZ00121  1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  665 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERSLNQQRVQKLEAEvdqwQARMLIVEAQH 744
Cdd:PTZ00121  1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKAD----EAKKKAEEAKK 1484
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  745 GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL------- 817
Cdd:PTZ00121  1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekk 1564
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  818 ---HAERIEALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsnKEKLKNQRAQIk 894
Cdd:PTZ00121  1565 kaeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-----AEEEKKKVEQL- 1638
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  895 lhlsaKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYEtsaRNKQQELRLV 974
Cdd:PTZ00121  1639 -----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKK 1710
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*
gi 1039730346  975 AERKMRLELENRCKELEETIR--HLKRCKEATENKLKEASVESEQ 1017
Cdd:PTZ00121  1711 EAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEE 1755
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
322-877 2.84e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 2.84e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  322 LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNllldaAHASITGEL 401
Cdd:COG1196    237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-----DIARLEERR 311
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  402 QAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEwfqrevnkTEKE 481
Cdd:COG1196    312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE--------ELEE 383
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  482 VAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTK 561
Cdd:COG1196    384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE--EALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  562 VKQLEAQLHTFAETMLQKDHLH-KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALK 640
Cdd:COG1196    462 LELLAELLEEAALLEAALAELLeELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  641 ESQKLKGDLKALEDRES-KKVGNFQKQLAEAkedncKVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERSLN 719
Cdd:COG1196    542 AALAAALQNIVVEDDEVaAAAIEYLKAAKAG-----RATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADAR 614
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  720 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 799
Cdd:COG1196    615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  800 LEAFKEQVAEESKVEAELHAERI-EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRE-LRHKATELEK 877
Cdd:COG1196    695 LEEALLAEEEEERELAEAEEERLeEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLER 774
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
349-1024 5.41e-07

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 53.82  E-value: 5.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  349 ELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHL--ILEHNQCL 426
Cdd:TIGR00618  176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQ 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  427 QKSQEAEKRTVVQKELLESTIARLQ----------------GELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLE 490
Cdd:TIGR00618  256 LKKQQLLKQLRARIEELRAQEAVLEetqerinrarkaaplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  491 KELaeSKEDINVLNQNLQTLMEENKHLTNKMASLEHH--KATSDYQG--KVEKALEKITDSKNMLAYEKGKLQTKVKQLE 566
Cdd:TIGR00618  336 QQS--SIEEQRRLLQTLHSQEIHIRDAHEVATSIREIscQQHTLTQHihTLQQQKTTLTQKLQSLCKELDILQREQATID 413
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  567 AQLHTFAETMLQKDHLHKLNKA-------LEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAL 639
Cdd:TIGR00618  414 TRTSAFRDLQGQLAHAKKQQELqqryaelCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  640 KESQKLKGDLKALEDRESKKvgNFQKQLAEAKEDNCKVTIMLENvlaSHSKMQGALEKVQIELGRRDSEIAGLKKERSLN 719
Cdd:TIGR00618  494 ARLLELQEEPCPLCGSCIHP--NPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  720 QQRVQKLEAEVDQWQARMLIVEaQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 799
Cdd:TIGR00618  569 QQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  800 LEAFKEQVAEEskvEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDeanfrsvevsranrELRHKATELEKVV 879
Cdd:TIGR00618  648 LHALQLTLTQE---RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE--------------MLAQCQTLLRELE 710
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  880 NSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELrqMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQ 959
Cdd:TIGR00618  711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  960 YETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 1024
Cdd:TIGR00618  789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
447-991 6.14e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 53.89  E-value: 6.14e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  447 IARLQGELKASLQEKKSLLEKNEwfqrevnktEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEEnkhLTNKMASLEH 526
Cdd:PRK02224   178 VERVLSDQRGSLDQLKAQIEEKE---------EKDLHERLNGLESELAELDEEIERYEEQREQARET---RDEADEVLEE 245
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  527 HKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfaetmlqkdhlhklnkaLEVKYTQANSELSASKAY 606
Cdd:PRK02224   246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE-----------------LEEERDDLLAEAGLDDAD 308
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  607 LEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKK---VGNFQKQLAEAKEDNCKVTIMLEN 683
Cdd:PRK02224   309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEE 388
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  684 VLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQwqARMLIVEAQH----------GSEIE--PL 751
Cdd:PRK02224   389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT--ARERVEEAEAlleagkcpecGQPVEgsPH 466
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  752 QKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLqEKLESKERERQSLEAFKEQVAE---ESKVEAELHAERIEALRKQ 828
Cdd:PRK02224   467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRER 545
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  829 -------FQTERETAKKASQR------EVSELKKALDEANFRsVEVSRANRELRHKATELEKVVNSNKEKLKNQRA---Q 892
Cdd:PRK02224   546 aaeleaeAEEKREAAAEAEEEaeeareEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAElndE 624
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  893 IKLHLSAKAnnaqnmERMKQIEMELRQMEIIKDQYQKKNYEQSLS-----IQRFVSEMNTLQKEMelltksqyeTSARNK 967
Cdd:PRK02224   625 RRERLAEKR------ERKRELEAEFDEARIEEAREDKERAEEYLEqveekLDELREERDDLQAEI---------GAVENE 689
                          570       580
                   ....*....|....*....|....
gi 1039730346  968 QQELRLVAERkmRLELENRCKELE 991
Cdd:PRK02224   690 LEELEELRER--REALENRVEALE 711
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
719-906 7.50e-06

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 50.30  E-value: 7.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  719 NQQRVQKLEAEVDQWQARMLIVEAQhGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGhLQSKLDHLQEKLESKERERQ 798
Cdd:COG4913    608 NRAKLAALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDASSD 685
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  799 SLEAFKEQVAEESKVEAELHAERIEALRKQFQTEREtaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 878
Cdd:COG4913    686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
                          170       180
                   ....*....|....*....|....*...
gi 1039730346  879 VNSNKEKLKNQRAQiklhLSAKANNAQN 906
Cdd:COG4913    764 ERELRENLEERIDA----LRARLNRAEE 787
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
479-811 1.78e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 1.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  479 EKEVAKEKCN-LEKELAESKEDINVLNQNLQTLMEENKH------LTNKMASLEHHKATSDYQgKVEKALEKITDSKNML 551
Cdd:TIGR02169  171 KKEKALEELEeVEENIERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEGYELLKEKE-ALERQKEAIERQLASL 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  552 AYEKGKLQTKVKQLEAQLHTFAETMlqKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQA 631
Cdd:TIGR02169  250 EEELEKLTEEISELEKRLEEIEQLL--EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  632 VKCRDAALKESQKLKGDLKaledRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAG 711
Cdd:TIGR02169  328 EAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  712 LKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG---SEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQE 788
Cdd:TIGR02169  404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
                          330       340
                   ....*....|....*....|...
gi 1039730346  789 KLESKERERQSLEAFKEQVAEES 811
Cdd:TIGR02169  484 ELSKLQRELAEAEAQARASEERV 506
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
384-921 1.80e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 49.14  E-value: 1.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  384 QEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRtvvQKELLESTIARLQGELKASLQEKKS 463
Cdd:COG4913    287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  464 LLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQN-------LQTLMEENKHLTNKMASLEHHKatSDYQGK 536
Cdd:COG4913    364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaeaaLRDLRRELRELEAEIASLERRK--SNIPAR 441
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  537 VEKALEKITDSknmLAYEKGKLQ-----TKVKQLEAQ--------LHTFAETML-QKDHLHKLNKALE------------ 590
Cdd:COG4913    442 LLALRDALAEA---LGLDEAELPfvgelIEVRPEEERwrgaiervLGGFALTLLvPPEHYAAALRWVNrlhlrgrlvyer 518
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  591 VKYTQANSELSASKA--YLEQTEAHLKEMKSILgknEEELAQ---AVKCRDA-ALKESQ---------KLKGDLKALEDR 655
Cdd:COG4913    519 VRTGLPDPERPRLDPdsLAGKLDFKPHPFRAWL---EAELGRrfdYVCVDSPeELRRHPraitragqvKGNGTRHEKDDR 595
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  656 ES------------KKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQGALEKVQIELGRRDSEIAGLkKERSLNQQRV 723
Cdd:COG4913    596 RRirsryvlgfdnrAKLAALEAELAELEEE-----------LAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  724 QKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF 803
Cdd:COG4913    664 ASAEREIAELEAELERLDASS-DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  804 KEQVAE---ESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEAN----FRSVEVSRANRELRHKATELE 876
Cdd:COG4913    743 ARLELRallEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD 822
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  877 KVVNSN----KEKLKNQRA----QIKLHLSAKANNAQNM--ERMKQIEMELRQME 921
Cdd:COG4913    823 RLEEDGlpeyEERFKELLNensiEFVADLLSKLRRAIREikERIDPLNDSLKRIP 877
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
139-728 2.60e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.39  E-value: 2.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  139 EHSKGLKLLQLEVMNLRqqLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEK 218
Cdd:COG1196    217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  219 LVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLI 298
Cdd:COG1196    295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  299 cklvEENKATQISLKKEHEENiyLKSEILSLQDVSGKAQVLNDQLskkcSELTSMLQVVKMENSRIIAEHQAILKVEQKM 378
Cdd:COG1196    375 ----AEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEAL 444
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  379 ITEtfQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLilehnqcLQKSQEAEKRTVVQKELLESTIARLQGELKASL 458
Cdd:COG1196    445 EEA--AEEEAELEEEEEALLELLAELLEEAALLEAALAEL-------LEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  459 QEKKSLLEknewfQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENK-HLTNKMASLEHHKATSDYQGKV 537
Cdd:COG1196    516 LAGLRGLA-----GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaAKAGRATFLPLDKIRARAALAA 590
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  538 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEM 617
Cdd:COG1196    591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  618 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 697
Cdd:COG1196    671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
                          570       580       590
                   ....*....|....*....|....*....|.
gi 1039730346  698 VQIELGRRDSEIAGLKKERSLNQQRVQKLEA 728
Cdd:COG1196    751 EALEELPEPPDLEELERELERLEREIEALGP 781
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
721-1026 5.13e-05

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.53  E-value: 5.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  721 QRVQKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLditREDNRKLAMSLEQALQTNGHLQSKLDHLQEKL-ESKERERQS 799
Cdd:pfam12128  234 AGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWkEKRDELNGE 309
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  800 LEAFKEQVAEeskveAELHAERIEALRKQFQTERETAKKASQR-------EVSELKKALDEANFRSVEVSRANRELRHKA 872
Cdd:pfam12128  310 LSAADAAVAK-----DRSELEALEDQHGAFLDADIETAAADQEqlpswqsELENLEERLKALTGKHQDVTAKYNRRRSKI 384
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  873 TE-LEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvseMNTLQKE 951
Cdd:pfam12128  385 KEqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-----LNQATAT 459
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730346  952 MELLTksqyetsarnkQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATEN---KLKEASVESEQITANLEEAH 1026
Cdd:pfam12128  460 PELLL-----------QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELE 526
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
450-645 5.30e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 47.20  E-value: 5.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  450 LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKmaslehhka 529
Cdd:pfam07888   32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--------- 102
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  530 tsdyQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKA 605
Cdd:pfam07888  103 ----YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERetelERMKERAKKAGAQRKEEEAERKQLQA 178
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1039730346  606 YLEQTEAHL----KEMKSILGKNEEELAQAVKCRDAALKESQKL 645
Cdd:pfam07888  179 KLQQTEEELrslsKEFQELRNSLAQRDTQVLQLQDTITTLTQKL 222
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
692-955 6.10e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 6.10e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  692 QGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLiveaQHGSEIEPLQKSLDITREDNRKLAMSLEQ 771
Cdd:TIGR02168  245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQLEE 320
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  772 ALQTNGHLQSKLDHLQEKLESKERERQSL----EAFKEQVAEESKVEAELHaERIEALRKQFQTERetakkasqREVSEL 847
Cdd:TIGR02168  321 LEAQLEELESKLDELAEELAELEEKLEELkeelESLEAELEELEAELEELE-SRLEELEEQLETLR--------SKVAQL 391
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  848 KKALDEANfrsVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEME--LRQMEIIKD 925
Cdd:TIGR02168  392 ELQIASLN---NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErlEEALEELRE 468
                          250       260       270
                   ....*....|....*....|....*....|
gi 1039730346  926 QYQKKNYEqslsIQRFVSEMNTLQKEMELL 955
Cdd:TIGR02168  469 ELEEAEQA----LDAAERELAQLQARLDSL 494
PTZ00121 PTZ00121
MAEBL; Provisional
181-970 7.56e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 7.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  181 IATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALH 260
Cdd:PTZ00121  1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  261 SSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISlKKEHEENIylkSEILSLQDVSGKAQVln 340
Cdd:PTZ00121  1168 EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR-KAEDAKKA---EAVKKAEEAKKDAEE-- 1241
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  341 dqlSKKCSELTSMLQVVKMENSRI--IAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQ--NEKAQLQIHLD 416
Cdd:PTZ00121  1242 ---AKKAEEERNNEEIRKFEEARMahFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADeaKKKAEEAKKAD 1318
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  417 HLILEHNQCLQKSQEAEKRTVVQKELLEstIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAES 496
Cdd:PTZ00121  1319 EAKKKAEEAKKKADAAKKKAEEAKKAAE--AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  497 K---EDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKAleKITDSKNMLAYEKGKLQTKVKQLEA-----Q 568
Cdd:PTZ00121  1397 KkkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEakkadE 1474
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  569 LHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEelaqAVKCRDAALKESQKLKGD 648
Cdd:PTZ00121  1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADE 1550
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  649 LKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEa 728
Cdd:PTZ00121  1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE- 1629
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  729 EVDQWQARMLIVEAQHGSEIEPLQKSLDITR-----------EDNRKLamslEQALQTNGHLQSKLDHLQEKLEskerER 797
Cdd:PTZ00121  1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaeeakkaeEDKKKA----EEAKKAEEDEKKAAEALKKEAE----EA 1701
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  798 QSLEAFKEQVAEESKveaelhaeRIEALRKQFQTERETAKKASQREVSELKKAldeanfrsvEVSRANRELRHKATELEK 877
Cdd:PTZ00121  1702 KKAEELKKKEAEEKK--------KAEELKKAEEENKIKAEEAKKEAEEDKKKA---------EEAKKDEEEKKKIAHLKK 1764
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  878 VVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTL--QKEMELL 955
Cdd:PTZ00121  1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVadSKNMQLE 1844
                          810
                   ....*....|....*
gi 1039730346  956 TKSQYETSARNKQQE 970
Cdd:PTZ00121  1845 EADAFEKHKFNKNNE 1859
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
180-843 1.42e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 46.12  E-value: 1.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  180 EIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSassmllkVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:TIGR00618  180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKE-------LKHLREALQQTQQSHAYLTQKREAQ 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  260 HSSMKtTQDLLAQEQRKNEDLGMTISQLkSDLNSRDNLICK---LVEENKATQISLKKEHEENIYLKSEILSLQDVSGKA 336
Cdd:TIGR00618  253 EEQLK-KQQLLKQLRARIEELRAQEAVL-EETQERINRARKaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  337 QVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQK-------MITETFQEQNLLLDAAHASITGELQAVQNEKA 409
Cdd:TIGR00618  331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIScqqhtltQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  410 Q----------LQIHLDHliLEHNQCLQKSQEAEKRTVVQKELLESTIA-RLQGELKASLQEKKSLLEKNEWFQREVNKT 478
Cdd:TIGR00618  411 TidtrtsafrdLQGQLAH--AKKQQELQQRYAELCAAAITCTAQCEKLEkIHLQESAQSLKEREQQLQTKEQIHLQETRK 488
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  479 EKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKL 558
Cdd:TIGR00618  489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  559 QTKVKQLEAQLHTFAETMlqkDHLHKLNKALEvKYTQANSELSASKAYLE-------QTEAHLKEMKSILGKNEEELAQA 631
Cdd:TIGR00618  569 QQSFSILTQCDNRSKEDI---PNLQNITVRLQ-DLTEKLSEAEDMLACEQhallrklQPEQDLQDVRLHLQQCSQELALK 644
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  632 VKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCK--VTIMLENVLASHSKMQGALEKV--------QIE 701
Cdd:TIGR00618  645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKeqLTYWKEMLAQCQTLLRELETHIeeydrefnEIE 724
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  702 LGRRdSEIAGLKKERSLNQQRVQKLEAEVDqWQARMLIVEAQHGSEIEPLQKSLDITRED--------NRKLAMSLEQAL 773
Cdd:TIGR00618  725 NASS-SLGSDLAAREDALNQSLKELMHQAR-TVLKARTEAHFNNNEEVTAALQTGAELSHlaaeiqffNRLREEDTHLLK 802
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730346  774 QTNGHLQSKLDH-LQEKLESKERERQSLEAFKEQVAEESKVEAELHAE--RIEALRKQFQTERETAKKASQRE 843
Cdd:TIGR00618  803 TLEAEIGQEIPSdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLS 875
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
101-525 1.79e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 1.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  101 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 179
Cdd:pfam15921  379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  180 EIATETKKNAAVIEEELKTTKRKMNLKIQELrrqlAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTAL 259
Cdd:pfam15921  454 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL----TAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK 529
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  260 HSSM---KTTQDLLAQEQRKNEDLGMTIS---QLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVS 333
Cdd:pfam15921  530 LQELqhlKNEGDHLRNVQTECEALKLQMAekdKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ---LEKEINDRRLEL 606
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  334 GKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASI 397
Cdd:pfam15921  607 QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNK 686
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  398 TGELQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVN 476
Cdd:pfam15921  687 SEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNAN 761
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  477 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 525
Cdd:pfam15921  762 KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
439-730 1.89e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.83  E-value: 1.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  439 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKcnleKELAESKEDINVLNQNLQTLMEENKHLT 518
Cdd:TIGR02169  689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELE 764
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  519 NKMASLEHHKAtsdyqgKVEKALEKITDSKNMlayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANS 598
Cdd:TIGR02169  765 ARIEELEEDLH------KLEEALNDLEARLSH-----SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  599 ELSASKAYLEQTEAHLKEMKS---ILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNC 675
Cdd:TIGR02169  834 EIQELQEQRIDLKEQIKSIEKeieNLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  676 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLnQQRVQKLEAEV 730
Cdd:TIGR02169  914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEI 967
PLN02939 PLN02939
transferase, transferring glycosyl groups
496-860 1.92e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 45.66  E-value: 1.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  496 SKEDINVLNQNLQTLMEENKHLTNKMA---SLEHHKATS---DYQGKVEKALEKITDSKNmlayekgKLQTKVKQLEA-- 567
Cdd:PLN02939    54 IAPKQRSSNSKLQSNTDENGQLENTSLrtvMELPQKSTSsddDHNRASMQRDEAIAAIDN-------EQQTNSKDGEQls 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  568 --QLHTFAEtMLQ--KDHLHKLNKALEVKYTQANSELSASKAYleQTEAHLKEMKsiLGKNEEELAQAVKCR-DAALKES 642
Cdd:PLN02939   127 dfQLEDLVG-MIQnaEKNILLLNQARLQALEDLEKILTEKEAL--QGKINILEMR--LSETDARIKLAAQEKiHVEILEE 201
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  643 Q--KLKGDLKALEDRESKKVGNFQKQLAEAKEDNckvtIMLENVLAshskmqgALEKVQIELGRRDSEIAGLKKERSLNQ 720
Cdd:PLN02939   202 QleKLRNELLIRGATEGLCVHSLSKELDVLKEEN----MLLKDDIQ-------FLKAELIEVAETEERVFKLEKERSLLD 270
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  721 QRVQKLE-----AEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQalqtNGHLQSKLDHLQEKLEsker 795
Cdd:PLN02939   271 ASLRELEskfivAQEDVSKLSPLQYDCWW-EKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLK---- 341
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039730346  796 erqsleafKEQVAEESKVEAELHAERIEALRKQFQT---ERETAKKASQREVSE----LKKALDEANFRSVE 860
Cdd:PLN02939   342 --------EANVSKFSSYKVELLQQKLKLLEERLQAsdhEIHSYIQLYQESIKEfqdtLSKLKEESKKRSLE 405
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
701-1010 3.04e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 3.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  701 ELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQalqtnghLQ 780
Cdd:TIGR02169  675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEE-------LE 743
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  781 SKLDHLQEKLESKERERQSLEAFKEQVaEESKVEAELHAERIEA-LRKQFQTERETAKKASQREVSELKKALDEANFRSV 859
Cdd:TIGR02169  744 EDLSSLEQEIENVKSELKELEARIEEL-EEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  860 EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLhlsAKANNAQNMERMKQIEMELRQMEiikdqyqkknyeqslsiq 939
Cdd:TIGR02169  823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN---LNGKKEELEEELEELEAALRDLE------------------ 881
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730346  940 rfvSEMNTLQKEMELLtKSQYEtSARNKQQELRLVAERKmrlelENRCKELEETIrhlkrckEATENKLKE 1010
Cdd:TIGR02169  882 ---SRLGDLKKERDEL-EAQLR-ELERKIEELEAQIEKK-----RKRLSELKAKL-------EALEEELSE 935
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
175-732 3.37e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.71  E-value: 3.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  175 LTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQE 254
Cdd:pfam05483  196 ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEE 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  255 KCTALHSSMKTTQDLLAQEQRKNEDLGMTISQ-------LKSDLNSRDNLICKLVEENKATQISLKKEHEENIY------ 321
Cdd:pfam05483  276 KTKLQDENLKELIEKKDHLTKELEDIKMSLQRsmstqkaLEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFvvtefe 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  322 ---------LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIiAEHQAILKVEQKMITETFQEQNLL--L 390
Cdd:pfam05483  356 attcsleelLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-EELKKILAEDEKLLDEKKQFEKIAeeL 434
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  391 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekRTVVQKELLESTiaRLQGELKASLQEKKSLLEKNEW 470
Cdd:pfam05483  435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL--KTELEKEKLKNI--ELTAHCDKLLLENKELTQEASD 510
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  471 FQREVNKTEKEVAKEKCNLEKELaeskedinvlnQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNM 550
Cdd:pfam05483  511 MTLELKKHQEDIINCKKQEERML-----------KQIENLEEKEMNLRDELESVR--EEFIQKGDEVKCKLDKSEENARS 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  551 LAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGK--- 623
Cdd:pfam05483  578 IEYEVLKKEKQMKILENKCNNLKKQIENKnkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiid 657
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  624 -----------NEEELAQAVKCRDAALKESQKLKgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLA----SH 688
Cdd:pfam05483  658 nyqkeiedkkiSEEKLLEEVEKAKAIADEAVKLQ---KEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyknKE 734
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 1039730346  689 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQ 732
Cdd:pfam05483  735 QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
687-1017 5.70e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.96  E-value: 5.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  687 SHSKMQGALEKVQIELGRRDseiaglKKERSLNQQRVQKLEAEVDQWQA---RMLIVEAQHGSEIEPLQKSLDITREDNR 763
Cdd:pfam17380  285 SERQQQEKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAemdRQAAIYAEQERMAMERERELERIRQEER 358
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  764 KLAMSL--EQALQTNGHLQSKLDHLQ-EKLESKERERQSLEAfkeqvAEESKVEAELHAERIEALRKQFQTERETAKKAS 840
Cdd:pfam17380  359 KRELERirQEEIAMEISRMRELERLQmERQQKNERVRQELEA-----ARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  841 QREVSELKKAldeanfRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQiEMELRQM 920
Cdd:pfam17380  434 QREVRRLEEE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-ELEERKQ 506
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  921 EIIKDQYQKKnyeqslsiqrfvsemnTLQKEMELLTKSQYETSARNKQQELRlvaerkmrleleNRCKELEETIRHLKRC 1000
Cdd:pfam17380  507 AMIEEERKRK----------------LLEKEMEERQKAIYEEERRREAEEER------------RKQQEMEERRRIQEQM 558
                          330
                   ....*....|....*..
gi 1039730346 1001 KEATENKLKEASVESEQ 1017
Cdd:pfam17380  559 RKATEERSRLEAMERER 575
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
114-860 1.09e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 43.18  E-value: 1.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  114 HLQTEKESNPQKTAFLNDQLNIIQGEHSKGLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIE 193
Cdd:pfam15921   75 HIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  194 EELKTTKRKM----NLKIQELRRQLaqekLVRESLETSASSMLLKVQEmgsvveAERQQVHALQEKCTALHSSMKTTQDL 269
Cdd:pfam15921  155 EAAKCLKEDMledsNTQIEQLRKMM----LSHEGVLQEIRSILVDFEE------ASGKKIYEHDSMSTMHFRSLGSAISK 224
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  270 LAQEqrknedLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENI--YLKSEILSLQDVSGKAQVLNDQLSKKC 347
Cdd:pfam15921  225 ILRE------LDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIeqLISEHEVEITGLTEKASSARSQANSIQ 298
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  348 SELTSMLQVVKMENSRIIAEHQAI------LKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILE 421
Cdd:pfam15921  299 SQLEIIQEQARNQNSMYMRQLSDLestvsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  422 HNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELA------E 495
Cdd:pfam15921  379 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAaiqgknE 458
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  496 SKEDINVLNQNLQTLMEENK----HLTNKMASLEHHKAT-SDYQGKVEKAlEKITDSKNMlayEKGKLQTKVkqlEAQLH 570
Cdd:pfam15921  459 SLEKVSSLTAQLESTKEMLRkvveELTAKKMTLESSERTvSDLTASLQEK-ERAIEATNA---EITKLRSRV---DLKLQ 531
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  571 TFAETMLQKDHLHKLN---KALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQklkg 647
Cdd:pfam15921  532 ELQHLKNEGDHLRNVQtecEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ---- 607
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  648 DLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQ--RVQK 725
Cdd:pfam15921  608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfRNKS 687
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  726 LEAEVDQWQARMLIVEAQhgSEIEPLQ---KSLDITREDNRKLAMSLEQALQTN----GHLQSKLDHLQEKLESKERERQ 798
Cdd:pfam15921  688 EEMETTTNKLKMQLKSAQ--SELEQTRntlKSMEGSDGHAMKVAMGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKH 765
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  799 SLEAFKEQVAEE-SKVEAELH--AERIEALRKQfqtERETAKKASQREVselkkALDEANFRSVE 860
Cdd:pfam15921  766 FLKEEKNKLSQElSTVATEKNkmAGELEVLRSQ---ERRLKEKVANMEV-----ALDKASLQFAE 822
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
167-1026 1.26e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 43.11  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  167 RAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRESLETSASSMLLKVQEmgsvVEAER 246
Cdd:TIGR00606  186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKE----IEHNL 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  247 QQVHALQEKCTALHSSMKTTQDLLAQ-EQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSE 325
Cdd:TIGR00606  262 SKIMKLDNEIKALKSRKKQMEKDNSElELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  326 ILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKV---------------EQKMITETFQEQNLLL 390
Cdd:TIGR00606  342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERqiknfhtlvierqedEAKTAAQLCADLQSKE 421
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  391 DAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEW 470
Cdd:TIGR00606  422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK 501
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  471 FQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNL----------QTLMEENKHLTNKMASL---------------- 524
Cdd:TIGR00606  502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEmltkdkmdkdEQIRKIKSRHSDELTSLlgyfpnkkqledwlhs 581
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  525 --EHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSA 602
Cdd:TIGR00606  582 ksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  603 SKAYLE--------------------QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGN 662
Cdd:TIGR00606  662 TAVYSQfitqltdenqsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  663 FQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRD------SEIAGLKKERSLNQQRVQKLEAEVDQWQAR 736
Cdd:TIGR00606  742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  737 MLIVEAQHgsEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAE 816
Cdd:TIGR00606  822 RTVQQVNQ--EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  817 LHAE---------RIEALRKQFQTE-------RETAKKASQREVSELKKALDEANFRSVEVSR-----ANRELRHKATEL 875
Cdd:TIGR00606  900 LIREikdakeqdsPLETFLEKDQQEkeelissKETSNKKAQDKVNDIKEKVKNIHGYMKDIENkiqdgKDDYLKQKETEL 979
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  876 EKVVNSNKEKLKNQ-RAQIKLHLSAKANNAQNMER--------MKQIEMELRQMEIIKDQYQKKNYEQSLSIQRfvSEMN 946
Cdd:TIGR00606  980 NTVNAQLEECEKHQeKINEDMRLMRQDIDTQKIQErwlqdnltLRKRENELKEVEEELKQHLKEMGQMQVLQMK--QEHQ 1057
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  947 TLQKEMELLTKSQYETSARNKQ-QELRLVAERKMRlelENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 1025
Cdd:TIGR00606 1058 KLEENIDLIKRNHVLALGRQKGyEKEIKHFKKELR---EPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKF 1134

                   .
gi 1039730346 1026 H 1026
Cdd:TIGR00606 1135 H 1135
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
885-1060 1.35e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 1.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  885 KLKNQRAQIKLHLSAKANNAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSA 964
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  965 R---------------------NKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEA---SVESEQITA 1020
Cdd:TIGR02168  296 EisrleqqkqilrerlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLE 375
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1039730346 1021 NLEEAHRWFKCRFDGL--QLELTKNRLQRLPREDRWLEENQD 1060
Cdd:TIGR02168  376 ELEEQLETLRSKVAQLelQIASLNNEIERLEARLERLEDRRE 417
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
426-644 1.35e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.51  E-value: 1.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  426 LQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQ 505
Cdd:COG3883     18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAE----AEAEIEERREELGERAR 93
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  506 NLQtlmeENKHLTNKMASLEHHKATSDYQGKVEkALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetMLQKDHLHKL 585
Cdd:COG3883     94 ALY----RSGGSVSYLDVLLGSESFSDFLDRLS-ALSKIADADADLLEELKADKAELEAKKAEL------EAKLAELEAL 162
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730346  586 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 644
Cdd:COG3883    163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
mukB PRK04863
chromosome partition protein MukB;
488-847 1.65e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 42.64  E-value: 1.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  488 NLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEH-HKATSDYQGKVEKAlekitdsknMLAYEKGK-----LQTK 561
Cdd:PRK04863   290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdYQAASDHLNLVQTA---------LRQQEKIEryqadLEEL 360
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  562 VKQLEAQLHTFAETMLQKDhlhklnkALEVKYTQANSELSASKAYL---------EQTEA--------HLKEMKSILGKN 624
Cdd:PRK04863   361 EERLEEQNEVVEEADEQQE-------ENEARAEAAEEEVDELKSQLadyqqaldvQQTRAiqyqqavqALERAKQLCGLP 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  625 EEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ--GALEKVQIEL 702
Cdd:PRK04863   434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLA 512
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  703 GRRDSEIAGLK--KERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNG 777
Cdd:PRK04863   513 EQLQQLRMRLSelEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  778 --------------HLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTEREtakKASQRE 843
Cdd:PRK04863   593 ariqrlaarapawlAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIE---RLSQPG 668

                   ....
gi 1039730346  844 VSEL 847
Cdd:PRK04863   669 GSED 672
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
445-932 3.52e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.29  E-value: 3.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  445 STIAR-LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCnleKELAESKEDINVLNQNLQTLMEENKHLTNKMAS 523
Cdd:COG4717     37 STLLAfIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEEL---KEAEEKEEEYAELQEELEELEEELEELEAELEE 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  524 LEHHKATSDYQGKVEKALEKITDSKNMLAyekgKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSAs 603
Cdd:COG4717    114 LREELEKLEKLLQLLPLYQELEALEAELA----ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSL- 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  604 kayleQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDreSKKVGNFQKQLAEAKEDNCKVTIMLEN 683
Cdd:COG4717    189 -----ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN--ELEAAALEERLKEARLLLLIAAALLAL 261
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  684 VLASHSKMQGALEK---VQIELGRRDSEIAGLKKERSLNQQRVQkleaEVDQWQARMLIVEAQHGSEIEPLQKSLDITRE 760
Cdd:COG4717    262 LGLGGSLLSLILTIagvLFLVLGLLALLFLLLAREKASLGKEAE----ELQALPALEELEEEELEELLAALGLPPDLSPE 337
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  761 DNRKLAMSLEQALQtnghLQSKLDHLQEkleskERERQSLEAFKEQVAEESKVEAElhaERIEALRKQFQTERETakkas 840
Cdd:COG4717    338 ELLELLDRIEELQE----LLREAEELEE-----ELQLEELEQEIAALLAEAGVEDE---EELRAALEQAEEYQEL----- 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  841 QREVSELKKALDEANFRSVEVSRAN--RELRHKATELEKVVNSNKEKLKN---QRAQIKLHLSAKANNAQNMERMKQIEM 915
Cdd:COG4717    401 KEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEElreELAELEAELEQLEEDGELAELLQELEE 480
                          490
                   ....*....|....*..
gi 1039730346  916 ELRQMEIIKDQYQKKNY 932
Cdd:COG4717    481 LKAELRELAEEWAALKL 497
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
144-332 3.64e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 3.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQEKLVRES 223
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  224 LETSASSMLLKVQEMGSVVEAERQQVHALQEKctalhssmkttqdlLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVE 303
Cdd:TIGR02168  892 LRSELEELSEELRELESKRSELRRELEELREK--------------LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
                          170       180       190
                   ....*....|....*....|....*....|
gi 1039730346  304 ENKATQI-SLKKEHEENIYLKSEILSLQDV 332
Cdd:TIGR02168  958 ALENKIEdDEEEARRRLKRLENKIKELGPV 987
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
453-1009 3.73e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.16  E-value: 3.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  453 ELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsd 532
Cdd:TIGR04523  107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL--- 183
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  533 yqgKVEKALEKITDSKNMLAYEKGKLQTKV---KQLEAQLHTFAEtmlQKDHLHKLNKALEVKYTQANSELSASKAYLEQ 609
Cdd:TIGR04523  184 ---NIQKNIDKIKNKLLKLELLLSNLKKKIqknKSLESQISELKK---QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ 257
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  610 TEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdreSKKVGNFQKQLAEAKEDNCKVTIMLENVLASHS 689
Cdd:TIGR04523  258 LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKKLEEIQNQISQNN 334
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  690 KMQGALEkvqielgrrdSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLamsl 769
Cdd:TIGR04523  335 KIISQLN----------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI---- 400
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  770 EQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESK------VEAELHAERIEALRKQFQTERETAKKASQRE 843
Cdd:TIGR04523  401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnqdSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  844 VSELKKAldeanfrsvevsraNRELRHKATELEKVvNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQME- 921
Cdd:TIGR04523  481 KQNLEQK--------------QKELKSKEKELKKL-NEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEd 545
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  922 -IIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRC 1000
Cdd:TIGR04523  546 eLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625

                   ....*....
gi 1039730346 1001 KEATENKLK 1009
Cdd:TIGR04523  626 NEKLSSIIK 634
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
144-330 4.05e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 4.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIAT----ETKKNAAVIEEELKTTKRKmnlkIQELRRQLA-QEK 218
Cdd:COG4942     29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArrirALEQELAALEAELAELEKE----IAELRAELEaQKE 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  219 LVRESLET-----------------SASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLG 281
Cdd:COG4942    105 ELAELLRAlyrlgrqpplalllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  282 MTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQ 330
Cdd:COG4942    185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
155-279 4.69e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 4.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  155 RQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNL-KIQELRRQLAQEKLVRESLETSASSMLL 233
Cdd:COG4913    287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLEA 366
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1039730346  234 KVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQEQRKNED 279
Cdd:COG4913    367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
592-878 4.87e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 40.98  E-value: 4.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  592 KYTQANSELSASKAYLEQTEAHLKEMKSIlgknEEELAQAVKCRDAALKEsqklkgDLKALEDRESKKVGNFQKQLAEAK 671
Cdd:pfam12128  245 KLQQEFNTLESAELRLSHLHFGYKSDETL----IASRQEERQETSAELNQ------LLRTLDDQWKEKRDELNGELSAAD 314
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  672 EDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERSLNQQRVQKLEAEvdqWQARMLIVEAQHGSE 747
Cdd:pfam12128  315 AAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRRSKIKEQNNRD 391
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  748 IEPLQKSLDITREDNRKLAMSLEQALQTnghLQSKL--DHLQEKLESKERERQSLEAFKE--------QVAEESKVEAEL 817
Cdd:pfam12128  392 IAGIKDKLAKIREARDRQLAVAEDDLQA---LESELreQLEAGKLEFNEEEYRLKSRLGElklrlnqaTATPELLLQLEN 468
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730346  818 HAERIEALRKQfQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 878
Cdd:pfam12128  469 FDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
COG5022 COG5022
Myosin heavy chain [General function prediction only];
140-482 4.88e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 41.22  E-value: 4.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  140 HSKGLKLLQLEVMNLRQqLKVVKEE-EDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIqelrrqlaqek 218
Cdd:COG5022    767 ALKRIKKIQVIQHGFRL-RRLVDYElKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE----------- 834
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  219 lvRESLETSASSMLLKvQEMGSVVEAeRQQVHALQEKCTALHSSMKtTQDLLAQEQRKNEDLGmTISQLKSDLNSRDNLI 298
Cdd:COG5022    835 --TEEVEFSLKAEVLI-QKFGRSLKA-KKRFSLLKKETIYLQSAQR-VELAERQLQELKIDVK-SISSLKLVNLELESEI 908
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  299 CKLVEenkatqiSLKKEHEENIYLKSE-ILSLQDVSGKAQVLNDQLSKKCSEltSMLQVVKMENSRiIAEHQAILKVEQK 377
Cdd:COG5022    909 IELKK-------SLSSDLIENLEFKTElIARLKKLLNNIDLEEGPSIEYVKL--PELNKLHEVESK-LKETSEEYEDLLK 978
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  378 MITETFQEQN------LLLDAAHASITGELQAVQNEKAQLQiHLDHLILEHNQCLQKSQEA------EKRTVVQKELLES 445
Cdd:COG5022    979 KSTILVREGNkanselKNFKKELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSEstelsiLKPLQKLKGLLLL 1057
                          330       340       350
                   ....*....|....*....|....*....|....*....
gi 1039730346  446 TIARLQGELKASLQEKKSLL--EKNEWFQREVNKTEKEV 482
Cdd:COG5022   1058 ENNQLQARYKALKLRRENSLldDKQLYQLESTENLLKTI 1096
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
607-1002 4.90e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 41.18  E-value: 4.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  607 LEQTEAHLKEMKS-ILGKNEEELAQAVKCRDAALKEsqkLKGDLKALEDreskkvgnfQKQLAEAKEDNckvtimLENVL 685
Cdd:PRK02224   182 LSDQRGSLDQLKAqIEEKEEKDLHERLNGLESELAE---LDEEIERYEE---------QREQARETRDE------ADEVL 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  686 ASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM--LIVEAQHGS--------EIEPLQKSL 755
Cdd:PRK02224   244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDadaeaveaRREELEDRD 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  756 DITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqVAEESKVEAELHAERIEALRKQFQTERE- 834
Cdd:PRK02224   324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES----ELEEAREAVEDRREEIEELEEEIEELREr 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  835 -----TAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNK------------------------EK 885
Cdd:PRK02224   400 fgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedrervEE 479
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  886 LKNQRAQIKLHLSAKANNAQNMERMKQIEmelRQMEIIKDqyQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSAR 965
Cdd:PRK02224   480 LEAELEDLEEEVEEVEERLERAEDLVEAE---DRIERLEE--RREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|..
gi 1039730346  966 NKQ---QELRLVAERKMRL--ELENRCKELEETIRHLKRCKE 1002
Cdd:PRK02224   555 EKReaaAEAEEEAEEAREEvaELNSKLAELKERIESLERIRT 596
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
443-847 5.47e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.82  E-value: 5.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  443 LESTIARLQGELKaSLQEKKSLLEKNEWFQREVNKTEKEvakekcnLEKELAESKEDINVLNQNLQtLMEENKHLTNKMA 522
Cdd:PRK03918   312 IEKRLSRLEEEIN-GIEERIKELEEKEERLEELKKKLKE-------LEKRLEELEERHELYEEAKA-KKEELERLKKRLT 382
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  523 SLEHHKATSDYQgKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAET---------MLQKDHLHKLNKALEVKY 593
Cdd:PRK03918   383 GLTPEKLEKELE-ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrELTEEHRKELLEEYTAEL 461
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  594 TQANSELSASKAYLEQTEAHLKEMKSILGK------------------------NEEELAQAVKCRDAALKESQKLKGDL 649
Cdd:PRK03918   462 KRIEKELKEIEEKERKLRKELRELEKVLKKeseliklkelaeqlkeleeklkkyNLEELEKKAEEYEKLKEKLIKLKGEI 541
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  650 KALEDrESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ-GALEKVQIELG------RRDSEIAGLKKERSLNQQR 722
Cdd:PRK03918   542 KSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKelepfyNEYLELKDAEKELEREEKE 620
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  723 VQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITR-EDNRKLAMSLEQALQTnghLQSKLDHLQEKLESKERerq 798
Cdd:PRK03918   621 LKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEyEELREEYLELSRELAG---LRAELEELEKRREEIKK--- 694
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1039730346  799 SLEAFKEQVAEESKVEAELHA-----ERIEALRKQFQTERETAKKASQREVSEL 847
Cdd:PRK03918   695 TLEKLKEELEEREKAKKELEKlekalERVEELREKVKKYKALLKERALSKVGEI 748
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
432-644 5.78e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 5.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  432 AEKRTVVQKEL--LESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQNLQT 509
Cdd:COG4942     19 ADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIAE 94
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  510 LMEENKHLTNKMASLEHHKATSDYQGKVEKAL--EKITDSKNMLAYEKG----------KLQTKVKQLEAQLHTFAETML 577
Cdd:COG4942     95 LRAELEAQKEELAELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYlaparreqaeELRADLAELAALRAELEAERA 174
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039730346  578 QKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 644
Cdd:COG4942    175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
366-696 5.99e-03

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 40.44  E-value: 5.99e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  366 AEHQAILKVEQKMITETfqEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEhnqcLQKSQEAEKRTVVQKELLES 445
Cdd:pfam19220   45 QAKSRLLELEALLAQER--AAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAA----LREAEAAKEELRIELRDKTA 118
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  446 TIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVL---NQNLQTLMEEN----KHLT 518
Cdd:pfam19220  119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKALQR----AEGELATARERLALLeqeNRRLQALSEEQaaelAELT 194
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  519 NKMASLE-----HHKATSDYQGKV-------EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfAETML--QKDHLHK 584
Cdd:pfam19220  195 RRLAELEtqldaTRARLRALEGQLaaeqaerERAEAQLEEAVEAHRAERASLRMKLEALTARAAA-TEQLLaeARNQLRD 273
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  585 L----------NKALEVKYTQANSELSASKAYLEQTEAHLKEM---KSILGKNEEELAQAVKCRDAALKESQ----KLKG 647
Cdd:pfam19220  274 RdeairaaerrLKEASIERDTLERRLAGLEADLERRTQQFQEMqraRAELEERAEMLTKALAAKDAALERAEeriaSLSD 353
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*....
gi 1039730346  648 DLKALEDRESKKVGNFQKQLAEAKEDnckvtimLENVLASHSKMQGALE 696
Cdd:pfam19220  354 RIAELTKRFEVERAALEQANRRLKEE-------LQRERAERALAQGALE 395
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
779-956 7.01e-03

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 40.40  E-value: 7.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  779 LQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQT--ERETAKKasqrEVSELKKALDEANF 856
Cdd:pfam05667  340 LQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTldLLPDAEE----NIAKLQALVDASAQ 415
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  857 RSVEVSR-----------ANRELRHKATELEKVVNSNKEKLKNQRAQIKlHLSAKAnnAQNMERMKQIEMEL-------- 917
Cdd:pfam05667  416 RLVELAGqwekhrvplieEYRALKEAKSNKEDESQRKLEEIKELREKIK-EVAEEA--KQKEELYKQLVAEYerlpkdvs 492
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1039730346  918 ------RQMEIIKdQYQKknyeQSLSIQRFVSEMNTLQKEMELLT 956
Cdd:pfam05667  493 rsaytrRILEIVK-NIKK----QKEEITKILSDTKSLQKEINSLT 532
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
584-864 7.06e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 40.30  E-value: 7.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  584 KLNKALeVKYTQANSELSASKAylEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES--KKVG 661
Cdd:PRK05771    54 KLSEAL-DKLRSYLPKLNPLRE--EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIErlEPWG 130
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  662 NFqkqlaeakednckvTIMLENVLASHSkmqgalekVQIELGRRDSEIAGLKKERSlnQQRVQKLEAEVDQWQARMLIVE 741
Cdd:PRK05771   131 NF--------------DLDLSLLLGFKY--------VSVFVGTVPEDKLEELKLES--DVENVEYISTDKGYVYVVVVVL 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  742 AQHGSEIEPLQKSLDITREDnrklamsleqaLQTNGHLQSKLDHLQEKLESKERERQS----LEAFKEQVAEESKVEAEL 817
Cdd:PRK05771   187 KELSDEVEEELKKLGFERLE-----------LEEEGTPSELIREIKEELEEIEKERESlleeLKELAKKYLEELLALYEY 255
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1039730346  818 ---HAERIEALRKQFQTERETAKKA--SQREVSELKKALDEANFRSVEVSRA 864
Cdd:PRK05771   256 leiELERAEALSKFLKTDKTFAIEGwvPEDRVKKLKELIDKATGGSAYVEFV 307
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
534-654 8.14e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 39.66  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  534 QGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTF-AETMLQKDHLHKLNKALEVKYTQANSEL------------ 600
Cdd:cd22656    109 DEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFeNQTEKDQTALETLEKALKDLLTDEGGAIarkeikdlqkel 188
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039730346  601 -SASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAlkesQKLKGDLKALED 654
Cdd:cd22656    189 eKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADL----TAADTDLDNLLA 239
46 PHA02562
endonuclease subunit; Provisional
144-350 8.48e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 40.00  E-value: 8.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  144 LKLLQLEVMNLRQQLKVVKEEEDRAQ----DEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQELRRQLAQ--E 217
Cdd:PHA02562   183 IQTLDMKIDHIQQQIKTYNKNIEEQRkkngENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKlnT 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  218 KLVRESLETSASSMLLKVQEMGSVVEAERQQVHALQEKCTALHSSMKTTQDLLAQ--------EQRKNE--DLGMTISQL 287
Cdd:PHA02562   263 AAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKldtaidelEEIMDEfnEQSKKLLEL 342
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730346  288 KSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSgkaqvlnDQLSKKCSEL 350
Cdd:PHA02562   343 KNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL-------DKIVKTKSEL 398
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
600-845 9.64e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 9.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  600 LSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdresKKVGNFQKQLAEAKEDnckvti 679
Cdd:COG4942     15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAE------ 84
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  680 mLENVLASHSKMQGALEKVQIELGRRDSEIaglkkERSLNQQRVQKLEAEVDQWQA-RMLIVEAQHGSEIEPLQKSLDIT 758
Cdd:COG4942     85 -LAELEKEIAELRAELEAQKEELAELLRAL-----YRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRAD 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730346  759 REDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKK 838
Cdd:COG4942    159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238

                   ....*..
gi 1039730346  839 ASQREVS 845
Cdd:COG4942    239 AAERTPA 245
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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