|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
382-1009 |
5.43e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 5.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 382 ELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAekrtvvQKELLE--STIARLQGElKASLQEKKSLLEKNewfQREVNK 459
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEEL------QKELYAlaNEISRLEQQ-KQILRERLANLERQ---LEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 460 TEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsDYQGKVEKALEKITDSKNMLAYEKGK 539
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE--ELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 540 LQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQAnsELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 619
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 620 ALKESQKLKGDLKALEDRESKKVGNFQ--KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVqieLGRR---------- 687
Cdd:TIGR02168 480 AERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA---LGGRlqavvvenln 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 688 --DSEIAGLKKER----------SLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLD----------------- 738
Cdd:TIGR02168 557 aaKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnale 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 739 ------------------------ITREDNRKLAMSLEQAlQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-S 793
Cdd:TIGR02168 637 lakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAELRKELEELEEElE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 794 KVEAELHAER--IEALRKQFQTERETAKKASQR-------------EVSELKKALDEANFRSVEVSRANRELRHKATELE 858
Cdd:TIGR02168 716 QLRKELEELSrqISALRKDLARLEAEVEQLEERiaqlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 859 KVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERM-KQIEMELRQMEIIKDQYQKKNYEQ---SLSIQRFVSEMNTLQKEM 934
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLeRRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESEL 875
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 935 ELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1009
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
686-960 |
1.30e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 686 RRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSeiepLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL 765
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 766 DHLQEKLESKERERQSLEAfKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEANfrsvEVSR 845
Cdd:COG1196 312 RELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 846 ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVS 925
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270
....*....|....*....|....*....|....*
gi 1039730348 926 EMNTLQKEMELLTKSQYETSARNKQQELRLVAERK 960
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-884 |
1.47e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 122 LENLIQSLKMNIFHLQTEKESnPQKTAFLNDQLNIIQGEHSKG-LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATL 200
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEK-AERYKELKAELRELELALLVLrLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 201 EIA----TETKKNAAVIEEELKTTKRKMNLKIQEVHALQEKCTALHSSMKTTQDLLAQEQRKNEDlgmtisqLKSDLNSR 276
Cdd:TIGR02168 270 EELrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE-------LAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 277 DNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIiaehqailkv 356
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL---------- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 357 eQKMITETFQEQNLLLDAAHASitgELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQgEL 436
Cdd:TIGR02168 413 -EDRRERLQQEIEELLKKLEEA---ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA-QL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 437 KASLQEKKSLLEKNEWFQREVNKTEKE---------VAKEKCNLEKELAESKEdiNVLNQNLQTLMEENKHLTNK-MASL 506
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNqsglsgilgVLSELISVDEGYEAAIE--AALGGRLQAVVVENLNAAKKaIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 507 EHHKA---------TSDYQGKVEKALEKITDSKNMLAYEKgKLQTKVKQLEAQLHTF------AETMLQKDHLHKLNKAL 571
Cdd:TIGR02168 566 KQNELgrvtflpldSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 572 EVKYTQANSELSASKAYL---EQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvgnfQKQ 648
Cdd:TIGR02168 645 YRIVTLDGDLVRPGGVITggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----RKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 649 LAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGS 728
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 729 EIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEAL- 807
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLn 880
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730348 808 -RKQFQTERETAKKASQREVSELKKALDeanfrsvEVSRANRELRHKATELEKVVNsNKEKLKNQRAQIKLHLSAKAN 884
Cdd:TIGR02168 881 eRASLEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLEL-RLEGLEVRIDNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-1030 |
3.31e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 435 ELKASLQEKKSLLEKNEWFQREVNKTEkevakekcnLEKELAESKEDINVLNQNLQTLmeENKHLTNKMASLEHHKATSD 514
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEE---------LEAELEELEAELEELEAELAEL--EAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 515 YQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEA 594
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 595 HLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQ 674
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL-----------EEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 675 GALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQA 754
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 755 LQTNGHLQSklDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALD 834
Cdd:COG1196 515 LLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 835 EANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNY 914
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 915 EQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEAS 994
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590
....*....|....*....|....*....|....*.
gi 1039730348 995 VESEQITANLEEAHRwfkcrfdglQLELTKNRLQRL 1030
Cdd:COG1196 753 LEELPEPPDLEELER---------ELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
512-860 |
6.86e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 6.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 512 TSDYQGKVEKALEKITDSKNMLayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL-EVKYTQANSELSASKAYLE 590
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENI----ERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 591 QTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVgnfQKQLAEAKEDNCKVTIMLENVLASH 670
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 671 SKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEaqhgSEIEPLQKSLDITREDNRKLAMS 750
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----AELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 751 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqvaeeskveaelHAERIEALRKQFQTERETAK---KASQREVS 827
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNA---------------AIAGIEAKINELEEEKEDKAleiKKQEWKLE 458
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039730348 828 ELKKALDEANFR----SVEVSRANRELRHKATELEKV 860
Cdd:TIGR02169 459 QLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-1007 |
3.71e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 372 LDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKR---------TVVQKEL--LESTIARLQGELKASL 440
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeqLRVKEKIgeLEAEIASLERSIAEKE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 441 QEKKSLLEKNEWFQREVNKTEKEVAkekcNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE-HHKATSDYQGKV 519
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 520 EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetmlqkdhlhklnkalevkyTQANSELSASKAYLEQTEAHLKEM 599
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEEL------------------------ADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 600 KSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEK 679
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 680 VQiELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG-------SEIEPLQKSLDITRED--------- 743
Cdd:TIGR02169 527 VA-QLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplNKMRDERRDLSILSEDgvigfavdl 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 744 ---NRKLAMSLEQALQTNG---HLQSKLDHLQE----KLESKERERQSL-------EAFKEQVAEESKVEAELHAERIEA 806
Cdd:TIGR02169 606 vefDPKYEPAFKYVFGDTLvveDIEAARRLMGKyrmvTLEGELFEKSGAmtggsraPRGGILFSRSEPAELQRLRERLEG 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 807 LRKQfqteretaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 886
Cdd:TIGR02169 686 LKRE--------LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 887 QNMERmkqIEMELRQMEIIKDQYQKK--NYEQSLS---IQRFVSEMNTLQKEM----------------ELLTKSQYETS 945
Cdd:TIGR02169 758 SELKE---LEARIEELEEDLHKLEEAlnDLEARLShsrIPEIQAELSKLEEEVsriearlreieqklnrLTLEKEYLEKE 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 946 ARNKQQELRLVAERKMRL-------------------ELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 1006
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIekeienlngkkeeleeeleELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
.
gi 1039730348 1007 A 1007
Cdd:TIGR02169 915 K 915
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
751-1024 |
3.77e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 751 LEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQF-QTERETAKKasQREVSEL 829
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 830 KKALDEANFRSVEVSR----ANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQMEI 904
Cdd:TIGR02169 257 TEEISELEKRLEEIEQlleeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEeRLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 905 IKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKmrlELENRCKELEETIRHLKRCKE 984
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKREINELKRELDRLQE 413
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1039730348 985 ATEnKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTK 1024
Cdd:TIGR02169 414 ELQ-RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
471-1002 |
4.50e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 4.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 471 LEKELAESKEDINVLNQNLQTLMEE--NKH------LTNKMASLEHHkaTSDYQGKVEKALEKITDSKNMLAYEKGKLQT 542
Cdd:pfam15921 247 LEALKSESQNKIELLLQQHQDRIEQliSEHeveitgLTEKASSARSQ--ANSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 543 KVKQLEAQLHTFAETMlqKDHLHKLNKALEVkytqANSELSASKAYLEQ-------TEAHLKEMKSILGKNEEELAqavk 615
Cdd:pfam15921 325 TVSQLRSELREAKRMY--EDKIEELEKQLVL----ANSELTEARTERDQfsqesgnLDDQLQKLLADLHKREKELS---- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 616 crdaaLKESQKlkgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLK 695
Cdd:pfam15921 395 -----LEKEQN-----KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 696 KERSLNQQRVQKLEAEVDQWQARMLIVEAQH------GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQ 769
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdlTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 770 EKleskereRQSLEAFKEQVAEESKVeaelhaerIEALRKQFQTERETAKKASQrevselkkaldEANFRSVEVSRANRE 849
Cdd:pfam15921 545 NV-------QTECEALKLQMAEKDKV--------IEILRQQIENMTQLVGQHGR-----------TAGAMQVEKAQLEKE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 850 LRHKATELEKVvnsnkEKLKNQRAQIKLHLSAKANNAQnMERMKQIEMELRQMEIIKDQYQKKnyEQSLS-IQRFVSEMN 928
Cdd:pfam15921 599 INDRRLELQEF-----KILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDIKQER--DQLLNeVKTSRNELN 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 929 TLQKEMELLTKSqyetsARNKQQELRLVAErKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITA 1002
Cdd:pfam15921 671 SLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
768-1041 |
2.75e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 768 LQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQtERETAKKASQREVSELKKALDEANFRSVEVSRAN 847
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 848 RELRHKATELEKVVNSNKEKLKNQRAQIKLHlsakannaqnMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEM 927
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIL----------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 928 NTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIrhlkrckEATENKLKEASVESEQITANLEEA 1007
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI-------ASLNNEIERLEARLERLEDRRERL 419
|
250 260 270
....*....|....*....|....*....|....
gi 1039730348 1008 HRWFKCRFDGLQLELTKNRLQRLPREDRWLEENQ 1041
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
166-1007 |
3.04e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.06 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 166 KLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQEVHALQEKctalhssm 245
Cdd:pfam02463 215 LKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEE-------- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 246 kttqdLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQL 325
Cdd:pfam02463 287 -----ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 326 SKKCSELtsmlqvvkmensriiAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHN 405
Cdd:pfam02463 362 EKLQEKL---------------EQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 406 qclqksQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDinVL 485
Cdd:pfam02463 427 ------EELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLE--ER 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 486 NQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDhlh 565
Cdd:pfam02463 499 SQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPL--- 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 566 KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNf 645
Cdd:pfam02463 576 GARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL- 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 646 QKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQ 725
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 726 HGSEIEPLQKSLDITREDNrKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF-KEQVAEESKVEAELHAERI 804
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEE-KSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEeKLKAQEEELRALEEELKEE 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 805 EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEkvvNSNKEKLKNQRAQIKLHLSAKAN 884
Cdd:pfam02463 814 AELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE---LLQELLLKEEELEEQKLKDELES 890
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 885 NAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLE 964
Cdd:pfam02463 891 KEEK-EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAK 969
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1039730348 965 LENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEA 1007
Cdd:pfam02463 970 EELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAII 1012
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
681-1000 |
4.82e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 681 QIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGH 760
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 761 LQSKLDHLQEKLESKERERQSLEAFKEqvAEESKVEAELHAERIEALRKQFQTERETaKKASQREVSELKKALDEANFRS 840
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAEAAKAEAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKA 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 841 VEVSRANrELRHKATELEK----VVNSNKEKLKNQRAQIKLHLSAKANNAQNM--ERMKQIEMELRQMEIIKDQYQKKNY 914
Cdd:PTZ00121 1388 EEKKKAD-EAKKKAEEDKKkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKaeEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 915 EQSLSIQRFVSEMNTLQKEMELLTKSQyetSARNKQQELRLVAERKMRLELENRCKELE--ETIRHLKRCKEATENKLKE 992
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAE 1543
|
....*...
gi 1039730348 993 ASVESEQI 1000
Cdd:PTZ00121 1544 EKKKADEL 1551
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
459-1006 |
5.96e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 459 KTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHK----ATSDYQGKVEKALEKITDSKNMLA 534
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKeeieELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 535 YEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAV 614
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 615 KCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGL 694
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 695 KKE---------------RSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQK---SLDITREDNRKLaMSLEQALQ 756
Cdd:PRK03918 425 KKAieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLKKESEL-IKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 757 TNGHLQSKLD-HLQEKLESKERERQSL-EAFKEQVAEESKVEAELhaERIEALRKQfQTERETAKKASQREVSELKKALD 834
Cdd:PRK03918 504 QLKELEEKLKkYNLEELEKKAEEYEKLkEKLIKLKGEIKSLKKEL--EKLEELKKK-LAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 835 EANFRSV-EVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKN 913
Cdd:PRK03918 581 ELGFESVeELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 914 YEQ-SLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN------RCKELEETIRHLKrcKEAT 986
Cdd:PRK03918 661 YEElREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKlekaleRVEELREKVKKYK--ALLK 738
|
570 580
....*....|....*....|
gi 1039730348 987 ENKLKEASVESEQITANLEE 1006
Cdd:PRK03918 739 ERALSKVGEIASEIFEELTE 758
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
304-859 |
9.40e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 9.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 304 LKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNllldaAHASITGEL 383
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-----DIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 384 QAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEwfqrevnkTEKE 463
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE--------ELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 464 VAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTK 543
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE--EALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 544 VKQLEAQLHTFAETMLQKDHLH-KLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALK 622
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLeELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 623 ESQKLKGDLKALEDRES-KKVGNFQKQLAEAkedncKVTIMLENVLASHSKMQGALEKVQIELGRRdsEIAGLKKERSLN 701
Cdd:COG1196 542 AALAAALQNIVVEDDEVaAAAIEYLKAAKAG-----RATFLPLDKIRARAALAAALARGAIGAAVD--LVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 702 QQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 781
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 782 LEAFKEQVAEESKVEAELHAERI-EALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRE-LRHKATELEK 859
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLeEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLER 774
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
663-858 |
1.10e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 663 LENVLASHSKMQGALEKVQ-IELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQhgseieplqkslditR 741
Cdd:COG4913 254 LEPIRELAERYAAARERLAeLEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR---------------L 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 742 EDNRKLAMSLEQALQTNG-----HLQSKLDHLQEKLESKERERQSLEAFKEQVaeesKVEAELHAERIEALRKQFQTERE 816
Cdd:COG4913 319 DALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAAL----GLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730348 817 TAKkasqREVSELKKALDEAnfrSVEVSRANRELRHKATELE 858
Cdd:COG4913 395 ALE----EELEALEEALAEA---EAALRDLRRELRELEAEIA 429
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
331-1006 |
1.17e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 331 ELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHL--ILEHNQCL 408
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 409 QKSQEAEKRTVVQKELLESTIARLQ----------------GELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLE 472
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEetqerinrarkaaplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 473 KELaeSKEDINVLNQNLQTLMEENKHLTNKMASLEHH--KATSDYQG--KVEKALEKITDSKNMLAYEKGKLQTKVKQLE 548
Cdd:TIGR00618 336 QQS--SIEEQRRLLQTLHSQEIHIRDAHEVATSIREIscQQHTLTQHihTLQQQKTTLTQKLQSLCKELDILQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 549 AQLHTFAETMLQKDHLHKLNKA-------LEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAL 621
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELqqryaelCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 622 KESQKLKGDLKALEDRESKKvgNFQKQLAEAKEDNCKVTIMLENvlaSHSKMQGALEKVQIELGRRDSEIAGLKKERSLN 701
Cdd:TIGR00618 494 ARLLELQEEPCPLCGSCIHP--NPARQDIDNPGPLTRRMQRGEQ---TYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 702 QQRVQKLEAEVDQWQARMLIVEaQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQS 781
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQ-NITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 782 LEAFKEQVAEEskvEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDeanfrsvevsranrELRHKATELEKVV 861
Cdd:TIGR00618 648 LHALQLTLTQE---RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE--------------MLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 862 NSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELrqMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQ 941
Cdd:TIGR00618 711 THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQ 788
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 942 YETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEE 1006
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
409-999 |
1.34e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 409 QKSQEAEKRTVVQK--ELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLN 486
Cdd:PTZ00121 1176 KKAEAARKAEEVRKaeELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 487 QNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKdhLHK 566
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--ADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 567 LNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAvkcRDAALKESQKLKGDLKALEDRESKKVGNFQ 646
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 647 KQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAglKKERSLNQQRVQKLEAEvdqwQARMLIVEAQH 726
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKAD----EAKKKAEEAKK 1484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 727 GSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL------- 799
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekk 1564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 800 ---HAERIEALRKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKvvnsnKEKLKNQRAQIk 876
Cdd:PTZ00121 1565 kaeEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-----AEEEKKKVEQL- 1638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 877 lhlsaKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYEtsaRNKQQELRLV 956
Cdd:PTZ00121 1639 -----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKK 1710
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1039730348 957 AERKMRLELENRCKELEETIR--HLKRCKEATENKLKEASVESEQ 999
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
429-973 |
1.86e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 429 IARLQGELKASLQEKKSLLEKNEwfqrevnktEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEEnkhLTNKMASLEH 508
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKE---------EKDLHERLNGLESELAELDEEIERYEEQREQARET---RDEADEVLEE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 509 HKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfaetmlqkdhlhklnkaLEVKYTQANSELSASKAY 588
Cdd:PRK02224 246 HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE-----------------LEEERDDLLAEAGLDDAD 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 589 LEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKK---VGNFQKQLAEAKEDNCKVTIMLEN 665
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 666 VLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQwqARMLIVEAQH----------GSEIE--PL 733
Cdd:PRK02224 389 LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT--ARERVEEAEAlleagkcpecGQPVEgsPH 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 734 QKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLqEKLESKERERQSLEAFKEQVAE---ESKVEAELHAERIEALRKQ 810
Cdd:PRK02224 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 811 -------FQTERETAKKASQR------EVSELKKALDEANFRsVEVSRANRELRHKATELEKVVNSNKEKLKNQRA---Q 874
Cdd:PRK02224 546 aaeleaeAEEKREAAAEAEEEaeeareEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAElndE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 875 IKLHLSAKAnnaqnmERMKQIEMELRQMEIIKDQYQKKNYEQSLS-----IQRFVSEMNTLQKEMelltksqyeTSARNK 949
Cdd:PRK02224 625 RRERLAEKR------ERKRELEAEFDEARIEEAREDKERAEEYLEqveekLDELREERDDLQAEI---------GAVENE 689
|
570 580
....*....|....*....|....
gi 1039730348 950 QQELRLVAERkmRLELENRCKELE 973
Cdd:PRK02224 690 LEELEELRER--REALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-866 |
1.59e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 165 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEiatETKKNAAVIEEELKT-TKRKMNLKIQEVHALQEKCTALHS 243
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 244 SMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEEnkatqisLKKEHEENIYLKSEILSLQDVSGKAQVLND 323
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE-------IEEERKRRDKLTEEYAELKEELEDLRAELE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 324 QLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQeqnllLDAAHASITGELQAVQNEKAQLQIHLDHLILE 403
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR-----LSEELADLNAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 404 HNQCLQK-SQEAEKRTVVQKEL--LESTIARLQGELKASLQEKKSLLEKNEWFQREV--NKTEKEV-------------- 464
Cdd:TIGR02169 450 IKKQEWKlEQLAADLSKYEQELydLKEEYDRVEKELSKLQRELAEAEAQARASEERVrgGRAVEEVlkasiqgvhgtvaq 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 465 ---AKEKCNLEKELAESK-------EDINVLNQNLQTLMEEN-KHLT----NKMASLEHHKATSDYQGKVEKALEKIT-D 528
Cdd:TIGR02169 530 lgsVGERYATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRKaGRATflplNKMRDERRDLSILSEDGVIGFAVDLVEfD 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 529 SK--NMLAYEKG------KLQTKVKQL-EAQLHTFAETMLQKDHL----HKLNKALEVKYTQANSELSASKAYLEQTEAH 595
Cdd:TIGR02169 610 PKyePAFKYVFGdtlvveDIEAARRLMgKYRMVTLEGELFEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 596 LKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKkvgnFQKQLAEAKEDNCKVTIMLENVLASHSKMQG 675
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK----LKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 676 ALEKVQIELGRRDSEIAGLkkERSLNQQRVQKLEAEVDQwqarmliVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQAL 755
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSK-------LEEEV-SRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 756 QtngHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTERETAKK---ASQREVSELKKA 832
Cdd:TIGR02169 836 Q---ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERDELEAqlrELERKIEELEAQ 911
|
730 740 750
....*....|....*....|....*....|....
gi 1039730348 833 LDEANFRSVEVSRANRELRHKATELEKVVNSNKE 866
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-710 |
2.41e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 160 EHSKGLKLLQLEVMNLRqqLKVVKEEEDRAQDEMQRLTATLEIATETkknAAVIEEELKTTKRKMNLKIQEVHALQEKCT 239
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAE---LAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 240 ALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILSLQDVSGKAQ 319
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE---LEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 320 VLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMIT-----ETFQEQNLLLDAAHASITGELQAVQNEKAQLQ 394
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAllerlERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 395 IHLDHLILEHNQCLQKSQEAEKRTvVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKC----- 469
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEA-ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagava 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 470 -NLEKELAESKEDINVLNQNLQTLMEEN------------KHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYE 536
Cdd:COG1196 528 vLIGVEAAYEAALEAALAAALQNIVVEDdevaaaaieylkAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 537 KGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKC 616
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 617 RDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKK 696
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
570
....*....|....
gi 1039730348 697 ERSLNQQRVQKLEA 710
Cdd:COG1196 768 ELERLEREIEALGP 781
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
701-888 |
4.13e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 701 NQQRVQKLEAEVDQWQARMLIVEAQhGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGhLQSKLDHLQEKLESKERERQ 780
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEER-LEALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 781 SLEAFKEQVAEESKVEAELHAERIEALRKQFQTEREtaKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 860
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKE--LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180
....*....|....*....|....*...
gi 1039730348 861 VNSNKEKLKNQRAQiklhLSAKANNAQN 888
Cdd:COG4913 764 ERELRENLEERIDA----LRARLNRAEE 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
366-903 |
5.15e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 5.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 366 QEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRtvvQKELLESTIARLQGELKASLQEKKS 445
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 446 LLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQN-------LQTLMEENKHLTNKMASLEHHKatSDYQGK 518
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaeaaLRDLRRELRELEAEIASLERRK--SNIPAR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 519 VEKALEKITDSknmLAYEKGKLQ-----TKVKQLEAQ--------LHTFAETML-QKDHLHKLNKALE------------ 572
Cdd:COG4913 442 LLALRDALAEA---LGLDEAELPfvgelIEVRPEEERwrgaiervLGGFALTLLvPPEHYAAALRWVNrlhlrgrlvyer 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 573 VKYTQANSELSASKA--YLEQTEAHLKEMKSILgknEEELAQ---AVKCRDA-ALKESQ---------KLKGDLKALEDR 637
Cdd:COG4913 519 VRTGLPDPERPRLDPdsLAGKLDFKPHPFRAWL---EAELGRrfdYVCVDSPeELRRHPraitragqvKGNGTRHEKDDR 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 638 ES------------KKVGNFQKQLAEAKEDnckvtimlenvLASHSKMQGALEKVQIELGRRDSEIAGLkKERSLNQQRV 705
Cdd:COG4913 596 RRirsryvlgfdnrAKLAALEAELAELEEE-----------LAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 706 QKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAF 785
Cdd:COG4913 664 ASAEREIAELEAELERLDASS-DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 786 KEQVAE---ESKVEAELHAERIEALRKQFQTERETAKKASQREVSELKKALDEAN----FRSVEVSRANRELRHKATELE 858
Cdd:COG4913 743 ARLELRallEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLD 822
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 859 KVVNSN----KEKLKNQRA----QIKLHLSAKANNAQNM--ERMKQIEMELRQME 903
Cdd:COG4913 823 RLEEDGlpeyEERFKELLNensiEFVADLLSKLRRAIREikERIDPLNDSLKRIP 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-793 |
8.08e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 8.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 461 EKEVAKEKCN-LEKELAESKEDINVLNQNLQTLMEENKH------LTNKMASLEHHKATSDYQgKVEKALEKITDSKNML 533
Cdd:TIGR02169 171 KKEKALEELEeVEENIERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEGYELLKEKE-ALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 534 AYEKGKLQTKVKQLEAQLHTFAETMlqKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQA 613
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLL--EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 614 VKCRDAALKESQKLKGDLKaledRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAG 693
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 694 LKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG---SEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQE 770
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340
....*....|....*....|...
gi 1039730348 771 KLESKERERQSLEAFKEQVAEES 793
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERV 506
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
161-464 |
2.05e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 161 HSKGLKLLQLEVMNLRQqLKVVKEE-EDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQEVHALQEKCT 239
Cdd:COG5022 767 ALKRIKKIQVIQHGFRL-RRLVDYElKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE 845
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 240 ALHSS------------MKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLicKLVEENKATQIS-LKKEHEENIYLKS 306
Cdd:COG5022 846 VLIQKfgrslkakkrfsLLKKETIYLQSAQRVELAERQLQELKIDVKSISSL--KLVNLELESEIIeLKKSLSSDLIENL 923
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 307 EILS-----LQDVSGKAQVLNDQLSKKCSEltSMLQVVKMENSRiIAEHQAILKVEQKMITETFQEQN------LLLDAA 375
Cdd:COG5022 924 EFKTeliarLKKLLNNIDLEEGPSIEYVKL--PELNKLHEVESK-LKETSEEYEDLLKKSTILVREGNkanselKNFKKE 1000
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 376 HASITGELQAVQNEKAQLQiHLDHLILEHNQCLQKSQEA------EKRTVVQKELLESTIARLQGELKASLQEKKSLL-- 447
Cdd:COG5022 1001 LAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSEstelsiLKPLQKLKGLLLLENNQLQARYKALKLRRENSLld 1079
|
330
....*....|....*..
gi 1039730348 448 EKNEWFQREVNKTEKEV 464
Cdd:COG5022 1080 DKQLYQLESTENLLKTI 1096
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
432-627 |
2.24e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.35 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 432 LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKmaslehhka 511
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 512 tsdyQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQK----DHLHKLNKALEVKYTQANSELSASKA 587
Cdd:pfam07888 103 ----YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERetelERMKERAKKAGAQRKEEEAERKQLQA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1039730348 588 YLEQTEAHL----KEMKSILGKNEEELAQAVKCRDAALKESQKL 627
Cdd:pfam07888 179 KLQQTEEELrslsKEFQELRNSLAQRDTQVLQLQDTITTLTQKL 222
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
703-1008 |
2.31e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 703 QRVQKLEAEVDQWQARMLIVEAQHgSEIEPLQKSLditREDNRKLAMSLEQALQTNGHLQSKLDHLQEKL-ESKERERQS 781
Cdd:pfam12128 234 AGIMKIRPEFTKLQQEFNTLESAE-LRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWkEKRDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 782 LEAFKEQVAEeskveAELHAERIEALRKQFQTERETAKKASQR-------EVSELKKALDEANFRSVEVSRANRELRHKA 854
Cdd:pfam12128 310 LSAADAAVAK-----DRSELEALEDQHGAFLDADIETAAADQEqlpswqsELENLEERLKALTGKHQDVTAKYNRRRSKI 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 855 TE-LEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvseMNTLQKE 933
Cdd:pfam12128 385 KEqNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-----LNQATAT 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730348 934 MELLTksqyetsarnkQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATEN---KLKEASVESEQITANLEEAH 1008
Cdd:pfam12128 460 PELLL-----------QLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQaseALRQASRRLEERQSALDELE 526
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
674-967 |
2.65e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 674 QGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLiveaQHGSEIEPLQKSLDITREDNRKLAMSLEQ 753
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 754 ALQTNGHLQSKLDHLQEKLESKERERQSL----EAFKEQVAEESKVEAELHaERIEALRKQFQTERetakkasqREVSEL 829
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELkeelESLEAELEELEAELEELE-SRLEELEEQLETLR--------SKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 830 KKaldeanfrsvEVSRANRELRhkatELEKVVNSNKEKLKNQRAQIKLHLSAKANNaqnmeRMKQIEMELRQMEIIKDQY 909
Cdd:TIGR02168 392 EL----------QIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEA-----ELKELQAELEELEEELEEL 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039730348 910 QKKNyeqslsiQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELEN 967
Cdd:TIGR02168 453 QEEL-------ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
176-1008 |
3.83e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.12 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 176 RQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELKTTKRKMNLKIQEVHALQEKCTALHSSMKTTQDLLAQ- 254
Cdd:TIGR00606 209 LKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSEl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 255 EQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTS 334
Cdd:TIGR00606 289 ELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDS 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 335 MLQVVKMENSRIIAEHQAILKV---------------EQKMITETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDH 399
Cdd:TIGR00606 369 LIQSLATRLELDGFERGPFSERqiknfhtlvierqedEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 400 LILEHNQCLQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESK 479
Cdd:TIGR00606 449 LEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 480 EDINVLNQNL----------QTLMEENKHLTNKMASL------------------EHHKATSDYQGKVEKALEKITDSKN 531
Cdd:TIGR00606 529 HHTTTRTQMEmltkdkmdkdEQIRKIKSRHSDELTSLlgyfpnkkqledwlhsksKEINQTRDRLAKLNKELASLEQNKN 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 532 MLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASKAYLE--------------------Q 591
Cdd:TIGR00606 609 HINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpvcqrvfQ 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 592 TEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHS 671
Cdd:TIGR00606 689 TEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 672 KMQGALEKVQIELGRRD------SEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHgsEIEPLQKSLDITREDNR 745
Cdd:TIGR00606 769 EQETLLGTIMPEEESAKvcltdvTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQ--EKQEKQHELDTVVSKIE 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 746 KLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAE---------RIEALRKQFQTE-- 814
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREikdakeqdsPLETFLEKDQQEke 926
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 815 -----RETAKKASQREVSELKKALDEANFRSVEVSR-----ANRELRHKATELEKVVNSNKEKLKNQ-RAQIKLHLSAKA 883
Cdd:TIGR00606 927 elissKETSNKKAQDKVNDIKEKVKNIHGYMKDIENkiqdgKDDYLKQKETELNTVNAQLEECEKHQeKINEDMRLMRQD 1006
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 884 NNAQNMER--------MKQIEMELRQMEIIKDQYQKKNYEQSLSIQRfvSEMNTLQKEMELLTKSQYETSARNKQ-QELR 954
Cdd:TIGR00606 1007 IDTQKIQErwlqdnltLRKRENELKEVEEELKQHLKEMGQMQVLQMK--QEHQKLEENIDLIKRNHVLALGRQKGyEKEI 1084
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 955 LVAERKMRlelENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAH 1008
Cdd:TIGR00606 1085 KHFKKELR---EPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFH 1135
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
421-794 |
7.63e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 421 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKcnleKELAESKEDINVLNQNLQTLMEENKHLT 500
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 501 NKMASLEHHKAtsdyqgKVEKALEKITDSKNMlayekGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANS 580
Cdd:TIGR02169 765 ARIEELEEDLH------KLEEALNDLEARLSH-----SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 581 ELSASKAYLEQTEAHLKEMKS---ILGKNEEELAQAVKCRDAALKESQKLKGDLKaledresKKVGNFQKQLaeakednc 657
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKeieNLNGKKEELEEELEELEAALRDLESRLGDLK-------KERDELEAQL-------- 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 658 kvtimlenvlashSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQwqarmLIVEAQHGSEIEPLQKSL 737
Cdd:TIGR02169 899 -------------RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-----DEEIPEEELSLEDVQAEL 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039730348 738 DITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESK 794
Cdd:TIGR02169 961 QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
169-714 |
1.01e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.64 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 169 QLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEiatETKKNAAVIEEELKTTKRKMNLKIQEVHALQEKCTALHSSMKTT 248
Cdd:pfam05483 232 KKEINDKEKQVSLLLIQITEKENKMKDLTFLLE---ESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 249 QDLLAQEQRKNEDLGMTISQLKSD-------LNSRDNLICKLVEENKATQISLKKeheeniYLKSEILSLQDVSGKAQVL 321
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEkeaqmeeLNKAKAAHSFVVTEFEATTCSLEE------LLRTEQQRLEKNEDQLKII 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 322 NDQLSKKCSELTSMLQVVKMENSRIiAEHQAILKVEQKMITETFQEQNLL--LDAAHASITGELQAVQNEKAQLQIHLDH 399
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVEL-EELKKILAEDEKLLDEKKQFEKIAeeLKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 400 LILEHNQCLQKSQEAekRTVVQKELLESTiaRLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELaesk 479
Cdd:pfam05483 462 IKTSEEHYLKEVEDL--KTELEKEKLKNI--ELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERML---- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 480 edinvlnQNLQTLMEENKHLTNKMASLEhhKATSDYQGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETML 559
Cdd:pfam05483 534 -------KQIENLEEKEMNLRDELESVR--EEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 560 QK----DHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGK--------------NEEELAQAVKCRDAAL 621
Cdd:pfam05483 605 NKnkniEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiidnyqkeiedkkiSEEKLLEEVEKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 622 KESQKLKgdlKALEDRESKKVGNFQKQLAEAKEDNCKVTIMLENVLA----SHSKMQGALEKVQIELGRRDSEIAGLKKE 697
Cdd:pfam05483 685 DEAVKLQ---KEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGlyknKEQEQSSAKAALEIELSNIKAELLSLKKQ 761
|
570
....*....|....*..
gi 1039730348 698 RSLNQQRVQKLEAEVDQ 714
Cdd:pfam05483 762 LEIEKEEKEKLKMEAKE 778
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
478-842 |
1.26e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 478 SKEDINVLNQNLQTLMEENKHLTNKMA---SLEHHKATSDyqgkvekalEKITDSKNMLAYEKG-----KLQTKVKQLEA 549
Cdd:PLN02939 54 IAPKQRSSNSKLQSNTDENGQLENTSLrtvMELPQKSTSS---------DDDHNRASMQRDEAIaaidnEQQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 550 ----QLHTFAEtMLQ--KDHLHKLNKALEVKYTQANSELSASKAYleQTEAHLKEMKsiLGKNEEELAQAVKCR-DAALK 622
Cdd:PLN02939 125 lsdfQLEDLVG-MIQnaEKNILLLNQARLQALEDLEKILTEKEAL--QGKINILEMR--LSETDARIKLAAQEKiHVEIL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 623 ESQ--KLKGDLKALEDRESKKVGNFQKQLAEAKEDNckvtIMLENVLAshskmqgALEKVQIELGRRDSEIAGLKKERSL 700
Cdd:PLN02939 200 EEQleKLRNELLIRGATEGLCVHSLSKELDVLKEEN----MLLKDDIQ-------FLKAELIEVAETEERVFKLEKERSL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 701 NQQRVQKLE-----AEVDQWQARMLIVEAQHgSEIEPLQKSLDITREDNRKLAMSLEQalqtNGHLQSKLDHLQEKLEsk 775
Cdd:PLN02939 269 LDASLRELEskfivAQEDVSKLSPLQYDCWW-EKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLK-- 341
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 776 ererqsleafKEQVAEESKVEAELHAERIEALRKQFQT---ERETAKKASQREVSE----LKKALDEANFRSVE 842
Cdd:PLN02939 342 ----------EANVSKFSSYKVELLQQKLKLLEERLQAsdhEIHSYIQLYQESIKEfqdtLSKLKEESKKRSLE 405
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
669-999 |
2.14e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 669 SHSKMQGALEKVQIELGRRDseiaglKKERSLNQQRVQKLEAEVDQWQA---RMLIVEAQHGSEIEPLQKSLDITREDNR 745
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQE------KEEKAREVERRRKLEEAEKARQAemdRQAAIYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 746 KLAMSL--EQALQTNGHLQSKLDHLQ-EKLESKERERQSLEAfkeqvAEESKVEAELHAERIEALRKQFQTERETAKKAS 822
Cdd:pfam17380 359 KRELERirQEEIAMEISRMRELERLQmERQQKNERVRQELEA-----ARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 823 QREVSELKKAldeanfRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNAQNMERMKQiEMELRQM 902
Cdd:pfam17380 434 QREVRRLEEE------RAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK-ELEERKQ 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 903 EIIKDQYQKKnyeqslsiqrfvsemnTLQKEMELLTKSQYETSARNKQQElrlvaERKMRlelenrcKELEETIRHLKRC 982
Cdd:pfam17380 507 AMIEEERKRK----------------LLEKEMEERQKAIYEEERRREAEE-----ERRKQ-------QEMEERRRIQEQM 558
|
330
....*....|....*..
gi 1039730348 983 KEATENKLKEASVESEQ 999
Cdd:pfam17380 559 RKATEERSRLEAMERER 575
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
162-842 |
3.31e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 162 SKGLKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEELkttkrkmnlkiqEVHALQEKCTAL 241
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEV------------EITGLTEKASSA 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 242 HSSMKTTQDLLA--QEQRKNE---------DLGMTISQLKSDLNSRDNLICKLVEENKATQISLKKEHEEniyLKSEILS 310
Cdd:pfam15921 291 RSQANSIQSQLEiiQEQARNQnsmymrqlsDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTE---ARTERDQ 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 311 LQDVSGKaqvLNDQLSKKCSEL---TSMLQVVKMENSRI----IAEHQAILKVEQKMITETFQEQNL--LLDAAHASITG 381
Cdd:pfam15921 368 FSQESGN---LDDQLQKLLADLhkrEKELSLEKEQNKRLwdrdTGNSITIDHLRRELDDRNMEVQRLeaLLKAMKSECQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 382 ELQavqNEKAQLQihldhlilEHNQCLQKSQEAEKRTVVQKELLESTIARLQGelkaslqeKKSLLEKNEWFQREVNKT- 460
Cdd:pfam15921 445 QME---RQMAAIQ--------GKNESLEKVSSLTAQLESTKEMLRKVVEELTA--------KKMTLESSERTVSDLTASl 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 461 -EKEVAKEKCNLEKELAESKEDINVlnQNLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKNMLAYEKGK 539
Cdd:pfam15921 506 qEKERAIEATNAEITKLRSRVDLKL--QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 540 LQTKVKQLEAQLhtfaetmlqkdhlhklnkalEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDA 619
Cdd:pfam15921 584 TAGAMQVEKAQL--------------------EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 620 ALKESQklkgDLKALEDRESKKVGNFQKQLAEAKEDnckVTIMLENVLASHSKMQGALEKVQIELgrrdseiaglkkers 699
Cdd:pfam15921 644 RLRAVK----DIKQERDQLLNEVKTSRNELNSLSED---YEVLKRNFRNKSEEMETTTNKLKMQL--------------- 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 700 lnqqrvQKLEAEVDQWQARMLIVEAQHGSEIeplqkslditrednrKLAMSLEQALQTN----GHLQSKLDHLQEKLESK 775
Cdd:pfam15921 702 ------KSAQSELEQTRNTLKSMEGSDGHAM---------------KVAMGMQKQITAKrgqiDALQSKIQFLEEAMTNA 760
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 776 ERERQSLEAFKEQVAEE-SKVEAELH--AERIEALRKQfqtERETAKKASQREVselkkALDEANFRSVE 842
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQElSTVATEKNkmAGELEVLRSQ---ERRLKEKVANMEV-----ALDKASLQFAE 822
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
214-747 |
4.75e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 214 EEELKTTKRKMNLKIQEVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRDNLICKLVEENKATQIS 293
Cdd:TIGR04523 53 EKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 294 LKKEHEENIYLKSEILSLQDVSGKAQVLNDQLSKKCSELTSMLQVVKMENSRIIAE----HQAILKVEQKMIT------- 362
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNidkiKNKLLKLELLLSNlkkkiqk 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 363 --------ETFQEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKELLESTIARLQg 434
Cdd:TIGR04523 213 nkslesqiSELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN- 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 435 ELKASLQEKKSllEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKATSD 514
Cdd:TIGR04523 292 QLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 515 YQGKVEK--------ALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTF---------------AETMLQKDHLHKLNK-- 569
Cdd:TIGR04523 370 NEIEKLKkenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLqqekellekeierlkETIIKNNSEIKDLTNqd 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 570 -ALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQ 648
Cdd:TIGR04523 450 sVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKL 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 649 LAEAKEDNCKVTIMLENVLA-----SHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVE 723
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE 609
|
570 580
....*....|....*....|....
gi 1039730348 724 AQhgseIEPLQKSLDITREDNRKL 747
Cdd:TIGR04523 610 KK----ISSLEKELEKAKKENEKL 629
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
184-952 |
5.81e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 184 EEEDRAQDEMQRLTATLEIATETKKNAAVIEEElktTKRKMNLKIQEVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLG 263
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEE---ARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 264 MTISQLKSDLNSRDNLICKLVEENKATQISlKKEHEENIylkSEILSLQDVSGKAQVlndqlSKKCSELTSMLQVVKMEN 343
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEAR-KAEDAKKA---EAVKKAEEAKKDAEE-----AKKAEEERNNEEIRKFEE 1259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 344 SRI--IAEHQAILKVEQKMITETFQEQNLLLDAAHASITGELQAVQ--NEKAQLQIHLDHLILEHNQCLQKSQEAEKRTV 419
Cdd:PTZ00121 1260 ARMahFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADeaKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 420 VQKELLEstIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESK---EDINVLNQNLQTLMEEN 496
Cdd:PTZ00121 1340 EAKKAAE--AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKkkaEEDKKKADELKKAAAAK 1417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 497 KHLTNKMASLEHHKATSDYQGKVEKAleKITDSKNMLAYEKGKLQTKVKQLEA-----QLHTFAETMLQKDHLHKLNKAL 571
Cdd:PTZ00121 1418 KKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEakkadEAKKKAEEAKKADEAKKKAEEA 1495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 572 EVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEelaqAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAE 651
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 652 AKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEaEVDQWQARMLIVEAQHGSEIE 731
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE-EEKKKVEQLKKKEAEEKKKAE 1650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 732 PLQKSLDITR-----------EDNRKLamslEQALQTNGHLQSKLDHLQEKLEskerERQSLEAFKEQVAEESKveaelh 800
Cdd:PTZ00121 1651 ELKKAEEENKikaaeeakkaeEDKKKA----EEAKKAEEDEKKAAEALKKEAE----EAKKAEELKKKEAEEKK------ 1716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 801 aeRIEALRKQFQTERETAKKASQREVSELKKAldeanfrsvEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLS 880
Cdd:PTZ00121 1717 --KAEELKKAEEENKIKAEEAKKEAEEDKKKA---------EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 881 AKANNAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMN--TLQKEMELLTKSQYETSARNKQQE 952
Cdd:PTZ00121 1786 DEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKevADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
408-626 |
6.29e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 408 LQKSQEAEKRTVVQKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQ 487
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAE----AEAEIEERREELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 488 NLQtlmeENKHLTNKMASLEHHKATSDYQGKVEkALEKITDSKNMLAYEKGKLQTKVKQLEAQLhtfaetMLQKDHLHKL 567
Cdd:COG3883 94 ALY----RSGGSVSYLDVLLGSESFSDFLDRLS-ALSKIADADADLLEELKADKAELEAKKAEL------EAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730348 568 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 626
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
470-829 |
6.30e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 470 NLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEH-HKATSDYQGKVEKAlekitdsknMLAYEKGK-----LQTK 543
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdYQAASDHLNLVQTA---------LRQQEKIEryqadLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 544 VKQLEAQLHTFAETMLQKDhlhklnkALEVKYTQANSELSASKAYL---------EQTEA--------HLKEMKSILGKN 606
Cdd:PRK04863 361 EERLEEQNEVVEEADEQQE-------ENEARAEAAEEEVDELKSQLadyqqaldvQQTRAiqyqqavqALERAKQLCGLP 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 607 EEELAQAVKCRDAALKESQKLKGDLKALEDRESKKvGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ--GALEKVQIEL 684
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-QAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREllRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 685 GRRDSEIAGLK--KERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNG 759
Cdd:PRK04863 513 EQLQQLRMRLSelEQRLRQQQRAERLLAEFCKRLGKNLDDEDeleQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 760 --------------HLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKvEAELHAERIEALRKQFQTEREtakKASQRE 825
Cdd:PRK04863 593 ariqrlaarapawlAAQDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIE---RLSQPG 668
|
....
gi 1039730348 826 VSEL 829
Cdd:PRK04863 669 GSED 672
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
867-1042 |
7.84e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 7.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 867 KLKNQRAQIKLHLSAKANNAQNmERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSA 946
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 947 R---------------------NKQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEA---SVESEQITA 1002
Cdd:TIGR02168 296 EisrleqqkqilrerlanlerqLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELeaeLEELESRLE 375
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039730348 1003 NLEEAHRWFKCRFDGL--QLELTKNRLQRLPREDRWLEENQD 1042
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLelQIASLNNEIERLEARLERLEDRRE 417
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
427-914 |
8.17e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 427 STIAR-LQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCnleKELAESKEDINVLNQNLQTLMEENKHLTNKMAS 505
Cdd:COG4717 37 STLLAfIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEEL---KEAEEKEEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 506 LEHHKATSDYQGKVEKALEKITDSKNMLAyekgKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSAs 585
Cdd:COG4717 114 LREELEKLEKLLQLLPLYQELEALEAELA----ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSL- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 586 kayleQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDreSKKVGNFQKQLAEAKEDNCKVTIMLEN 665
Cdd:COG4717 189 -----ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN--ELEAAALEERLKEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 666 VLASHSKMQGALEK---VQIELGRRDSEIAGLKKERSLNQQRVQkleaEVDQWQARMLIVEAQHGSEIEPLQKSLDITRE 742
Cdd:COG4717 262 LGLGGSLLSLILTIagvLFLVLGLLALLFLLLAREKASLGKEAE----ELQALPALEELEEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 743 DNRKLAMSLEQALQtnghLQSKLDHLQEkleskERERQSLEAFKEQVAEESKVEAElhaERIEALRKQFQTERETakkas 822
Cdd:COG4717 338 ELLELLDRIEELQE----LLREAEELEE-----ELQLEELEQEIAALLAEAGVEDE---EELRAALEQAEEYQEL----- 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 823 QREVSELKKALDEANFRSVEVSRAN--RELRHKATELEKVVNSNKEKLKN---QRAQIKLHLSAKANNAQNMERMKQIEM 897
Cdd:COG4717 401 KEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEElreELAELEAELEQLEEDGELAELLQELEE 480
|
490
....*....|....*..
gi 1039730348 898 ELRQMEIIKDQYQKKNY 914
Cdd:COG4717 481 LKAELRELAEEWAALKL 497
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
348-678 |
1.18e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 348 AEHQAILKVEQKMITETfqEQNLLLDAAHASITGELQAVQNEKAQLQIHLDHLILEhnqcLQKSQEAEKRTVVQKELLES 427
Cdd:pfam19220 45 QAKSRLLELEALLAQER--AAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAA----LREAEAAKEELRIELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 428 TIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVL---NQNLQTLMEEN----KHLT 500
Cdd:pfam19220 119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKALQR----AEGELATARERLALLeqeNRRLQALSEEQaaelAELT 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 501 NKMASLE-----HHKATSDYQGKV-------EKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTfAETML--QKDHLHK 566
Cdd:pfam19220 195 RRLAELEtqldaTRARLRALEGQLaaeqaerERAEAQLEEAVEAHRAERASLRMKLEALTARAAA-TEQLLaeARNQLRD 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 567 L----------NKALEVKYTQANSELSASKAYLEQTEAHLKEM---KSILGKNEEELAQAVKCRDAALKESQ----KLKG 629
Cdd:pfam19220 274 RdeairaaerrLKEASIERDTLERRLAGLEADLERRTQQFQEMqraRAELEERAEMLTKALAAKDAALERAEeriaSLSD 353
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1039730348 630 DLKALEDRESKKVGNFQKQLAEAKEDnckvtimLENVLASHSKMQGALE 678
Cdd:pfam19220 354 RIAELTKRFEVERAALEQANRRLKEE-------LQRERAERALAQGALE 395
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
165-312 |
1.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 165 LKLLQLEVMNLRQQLKVVKEEEDRAQDEMQRLTATLEIATETKKNA-----AVIEEELKTTKRKMNLKIQEVHALQEKCT 239
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLEALLA 369
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039730348 240 ALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSDLNSRdnlicklVEENKATQISLKKEHEEniyLKSEILSLQ 312
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA-------LAEAEAALRDLRRELRE---LEAEIASLE 432
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-991 |
1.60e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 435 ELKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLEHHKAtsd 514
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL--- 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 515 yqgKVEKALEKITDSKNMLAYEKGKLQTKV---KQLEAQLHTFAEtmlQKDHLHKLNKALEVKYTQANSELSASKAYLEQ 591
Cdd:TIGR04523 184 ---NIQKNIDKIKNKLLKLELLLSNLKKKIqknKSLESQISELKK---QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 592 TEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdreSKKVGNFQKQLAEAKEDNCKVTIMLENVLASHS 671
Cdd:TIGR04523 258 LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKKLEEIQNQISQNN 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 672 KMQGALEkvqielgrrdSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLamsl 751
Cdd:TIGR04523 335 KIISQLN----------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI---- 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 752 EQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESK------VEAELHAERIEALRKQFQTERETAKKASQRE 825
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnqdSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 826 VSELKKAldeanfrsvevsraNRELRHKATELEKVvNSNKEKLKNQRAQIKLHLSAKANNAQNME-RMKQIEMELRQME- 903
Cdd:TIGR04523 481 KQNLEQK--------------QKELKSKEKELKKL-NEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEd 545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 904 -IIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIRHLKRC 982
Cdd:TIGR04523 546 eLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
....*....
gi 1039730348 983 KEATENKLK 991
Cdd:TIGR04523 626 NEKLSSIIK 634
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
400-829 |
1.83e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 400 LILEHNQCLQKSQEAEKRTVVQKELLESTIARLQgELKASLQEKKSLLEKNEWFQREVNKTE---------KEVAKEKCN 470
Cdd:PRK03918 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEerhelyeeaKAKKEELER 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 471 LEKELA-ESKEDINVLNQNLQT----LMEENKHLTNKMASLEHHKatsdyqGKVEKALEKITDSKNMLA---------YE 536
Cdd:PRK03918 377 LKKRLTgLTPEKLEKELEELEKakeeIEEEISKITARIGELKKEI------KELKKAIEELKKAKGKCPvcgrelteeHR 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 537 KGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEvKYTQANSELSASKAYLEQTEAHLKEMKSIlgkNEEELAQAVKC 616
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKY---NLEELEKKAEE 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 617 RDAALKESQKLKGDLKALEDrESKKVGNFQKQLAEAKEDNCKVTIMLENVLASHSKMQ-GALEKVQIELG------RRDS 689
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKelepfyNEYL 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 690 EIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEA---QHGSEIEPLQKSLDITR-EDNRKLAMSLEQALQTnghLQSKL 765
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKrleELRKELEELEKKYSEEEyEELREEYLELSRELAG---LRAEL 682
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730348 766 DHLQEKLESKERerqSLEAFKEQVAEESKVEAELHA-----ERIEALRKQFQTERETAKKASQREVSEL 829
Cdd:PRK03918 683 EELEKRREEIKK---TLEKLKEELEEREKAKKELEKlekalERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
589-984 |
1.97e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 589 LEQTEAHLKEMKS-ILGKNEEELAQAVKCRDAALKEsqkLKGDLKALEDreskkvgnfQKQLAEAKEDNckvtimLENVL 667
Cdd:PRK02224 182 LSDQRGSLDQLKAqIEEKEEKDLHERLNGLESELAE---LDEEIERYEE---------QREQARETRDE------ADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 668 ASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARM--LIVEAQHGS--------EIEPLQKSL 737
Cdd:PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERddLLAEAGLDDadaeaveaRREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 738 DITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAfkeqVAEESKVEAELHAERIEALRKQFQTERE- 816
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES----ELEEAREAVEDRREEIEELEEEIEELREr 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 817 -----TAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNK------------------------EK 867
Cdd:PRK02224 400 fgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedrervEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 868 LKNQRAQIKLHLSAKANNAQNMERMKQIEmelRQMEIIKDqyQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSAR 947
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAE---DRIERLEE--RREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1039730348 948 NKQ---QELRLVAERKMRL--ELENRCKELEETIRHLKRCKE 984
Cdd:PRK02224 555 EKReaaAEAEEEAEEAREEvaELNSKLAELKERIESLERIRT 596
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
574-860 |
2.21e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 574 KYTQANSELSASKAYLEQTEAHLKEMKSIlgknEEELAQAVKCRDAALKEsqklkgDLKALEDRESKKVGNFQKQLAEAK 653
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGYKSDETL----IASRQEERQETSAELNQ------LLRTLDDQWKEKRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 654 EDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERSLNQQRVQKLEAEvdqWQARMLIVEAQHGSE 729
Cdd:pfam12128 315 AAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRRSKIKEQNNRD 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 730 IEPLQKSLDITREDNRKLAMSLEQALQTnghLQSKL--DHLQEKLESKERERQSLEAFKE--------QVAEESKVEAEL 799
Cdd:pfam12128 392 IAGIKDKLAKIREARDRQLAVAEDDLQA---LESELreQLEAGKLEFNEEEYRLKSRLGElklrlnqaTATPELLLQLEN 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039730348 800 HAERIEALRKQfQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKV 860
Cdd:pfam12128 469 FDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-654 |
2.42e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 137 QTEKESNPQKTAFLNDQLNIIQGEHSKGLKLLQLEVMNLRQQLKvvKEEEDRAQDEMQRLTATLEIATETKKNAAVIEEE 216
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 217 LKTTKRKMNLKIQEVHALQEKCTALHSSMKTTQDLLAQEQRKNEDLGMTISQLKSdlnsrdnlicKLVEENKATQisLKK 296
Cdd:PTZ00121 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK----------KAEEKKKADE--AKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 297 EHEENIYLKSEILSLQDVSGKAqvlnDQLSKKCSEltsmlqVVKMENSRIIAEHQAILKVEQKMITETFQEQNLLLDAAH 376
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKA----DEAKKKAEE------KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 377 ASITGELQavqnEKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQK---ELLESTIARLQGELKASLQEKKS-LLEKNEW 452
Cdd:PTZ00121 1469 AKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkadEAKKAEEAKKADEAKKAEEAKKAdEAKKAEE 1544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 453 FQR--EVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQTLME-ENKHLTNKMASLEHHKATSDYQGKVEKAlEKITDS 529
Cdd:PTZ00121 1545 KKKadELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKAEEAKKAEE-AKIKAE 1623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 530 KNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKALEVKYTQANSELSASkayLEQTEAHLKEMKSILGKNEEE 609
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEE 1700
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1039730348 610 LAQAVKCRDAALKESQKLKgDLKALEDRESKKVGNFQKQLAEAKE 654
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEEDKK 1744
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
429-1027 |
2.87e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 429 IARLQGELKASLQEKKSLLEKN----EWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQNlqtlmeenKHLTN--K 502
Cdd:pfam05483 90 IKKWKVSIEAELKQKENKLQENrkiiEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAT--------RHLCNllK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 503 MASLEHHKATSDYQGKVEKALEKITDSKN-----MLAYEKGKLQTKVKQLEAQLHtfaetmLQKDHLHKLNKALEVKYTQ 577
Cdd:pfam05483 162 ETCARSAEKTKKYEYEREETRQVYMDLNNniekmILAFEELRVQAENARLEMHFK------LKEDHEKIQHLEEEYKKEI 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 578 ANSELSASKAYLEQTEAH--LKEMKSILGKNEE---ELAQAVKCRDAALKESQKLKGDL-KALED------RESKKVGNF 645
Cdd:pfam05483 236 NDKEKQVSLLLIQITEKEnkMKDLTFLLEESRDkanQLEEKTKLQDENLKELIEKKDHLtKELEDikmslqRSMSTQKAL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 646 QKQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELgrrDSEIAGLKKERSLNQQRVQKLEAevdqwQARMLIVEAQ 725
Cdd:pfam05483 316 EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEF---EATTCSLEELLRTEQQRLEKNED-----QLKIITMELQ 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 726 HGS----EIEPLQKSLDITREDNRKLAMSLEQALQTNghlqSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAelha 801
Cdd:pfam05483 388 KKSseleEMTKFKNNKEVELEELKKILAEDEKLLDEK----KQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQL---- 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 802 eriealrkqfqTERETAKKASQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNKEKLKNQRAQIKLHLSA 881
Cdd:pfam05483 460 -----------TAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQ 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 882 KANNAQNMERMKQIEMELR-QMEIIKDQYQKKNYEQSLSIQRfvSEMNTLQKEMELLTKSQYETSARNKQQELRLvaerk 960
Cdd:pfam05483 529 EERMLKQIENLEEKEMNLRdELESVREEFIQKGDEVKCKLDK--SEENARSIEYEVLKKEKQMKILENKCNNLKK----- 601
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 961 mrlELENRCK---ELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHRWFKCRFDGLQLELTKNRL 1027
Cdd:pfam05483 602 ---QIENKNKnieELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKI 668
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
414-626 |
2.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 414 AEKRTVVQKEL--LESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQNLQT 491
Cdd:COG4942 19 ADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 492 LMEENKHLTNKMASLEHHKATSDYQGKVEKAL--EKITDSKNMLAYEKG----------KLQTKVKQLEAQLHTFAETML 559
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLspEDFLDAVRRLQYLKYlaparreqaeELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039730348 560 QKDHLHKLNKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQK 626
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
347-839 |
3.10e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 347 IAEHQAILKVEQKMITETFQEQNLLLDA--AHASITGELQAVQNEKAQLQIHLDHLILEhNQCLQKSQEAEKRTVVQKEL 424
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAreVISCLKNELSELRRQIQRAELELQSTNSE-LEELQERLDLLKAKASEAEQ 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 425 LESTIARLQGELKASLQEKKSLLEKNEWFQ--REVNKTEKEVAKEKCNLEKELAESKEDINVLNQNLQT--LMEENKHlt 500
Cdd:pfam05557 154 LRQNLEKQQSSLAEAEQRIKELEFEIQSQEqdSEIVKNSKSELARIPELEKELERLREHNKHLNENIENklLLKEEVE-- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 501 nkmaslehhkatsDYQGKVEKaLEKITDSKNMLAYEKGKLQTKVKQLEAQLHTFAETMLQKDHLHKLNKAL---EVKYTQ 577
Cdd:pfam05557 232 -------------DLKRKLER-EEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLqqrEIVLKE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 578 ANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKEDNc 657
Cdd:pfam05557 298 ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSP- 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 658 KVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQH-GSEIEPLQKS 736
Cdd:pfam05557 377 QLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSlRRKLETLELE 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 737 LDITREDNRKLAMSLE-QALQTNGHL-QSKLDHLQEKLESKERERQSLEAFKEQvAEESKVEAelHAERIEALRKQFQTE 814
Cdd:pfam05557 457 RQRLREQKNELEMELErRCLQGDYDPkKTKVLHLSMNPAAEAYQQRKNQLEKLQ-AEIERLKR--LLKKLEDDLEQVLRL 533
|
490 500
....*....|....*....|....*
gi 1039730348 815 RETAKKASQREVSELKKALDEANFR 839
Cdd:pfam05557 534 PETTSTMNFKEVLDLRKELESAELK 558
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
761-938 |
3.75e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.17 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 761 LQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQT--ERETAKKasqrEVSELKKALDEANF 838
Cdd:pfam05667 340 LQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTldLLPDAEE----NIAKLQALVDASAQ 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 839 RSVEVSR-----------ANRELRHKATELEKVVNSNKEKLKNQRAQIKlHLSAKAnnAQNMERMKQIEMEL-------- 899
Cdd:pfam05667 416 RLVELAGqwekhrvplieEYRALKEAKSNKEDESQRKLEEIKELREKIK-EVAEEA--KQKEELYKQLVAEYerlpkdvs 492
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039730348 900 ------RQMEIIKdQYQKknyeQSLSIQRFVSEMNTLQKEMELLT 938
Cdd:pfam05667 493 rsaytrRILEIVK-NIKK----QKEEITKILSDTKSLQKEINSLT 532
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
695-1028 |
4.35e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 4.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 695 KKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGSEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKL--------- 765
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLqklladlhk 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 766 --------------------------DHLQEKLESKERERQSLEAFKEQVAEESKVEAELHA----------ERIEALRK 809
Cdd:pfam15921 389 rekelslekeqnkrlwdrdtgnsitiDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMaaiqgkneslEKVSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 810 QFQTERE---------TAKK----ASQREVSELKKALDEANfRSVEVSRAN-RELRH----KATELEKVVNSNkEKLKNQ 871
Cdd:pfam15921 469 QLESTKEmlrkvveelTAKKmtleSSERTVSDLTASLQEKE-RAIEATNAEiTKLRSrvdlKLQELQHLKNEG-DHLRNV 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 872 RAQiklhlsAKANNAQNMERMKQIEMELRQMEIIKD---QYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARN 948
Cdd:pfam15921 547 QTE------CEALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKI 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 949 KQQELRLVAERKMRLELENRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEAHRWFKCRFDglQLELTKNRLQ 1028
Cdd:pfam15921 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE--EMETTTNKLK 698
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
411-1046 |
4.57e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 411 SQEAEKRTVVQKELLESTIARLQGE---LKASLQEKKSLLEKNEWFQREVNKTEKEVAKEKCNLEKELAESKEDINVLNQ 487
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIidlEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 488 NLQTLMEENKHLTNKMASLEHHKATSDYQGKVEKALEKITDSKnmlayekgkLQTKVKQLEAQLHTFAETMLQKDHLHKL 567
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEE---------LKLLAKEEEELKSELLKLERRKVDDEEK 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 568 NKALEVKYTQANSELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQK 647
Cdd:pfam02463 316 LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 648 QLAEAKEDncKVTIMLENVLASHSKMQGALEKVQIElgrrdsEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHG 727
Cdd:pfam02463 396 ELELKSEE--EKEAQLLLELARQLEDLLKEEKKEEL------EILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 728 SEIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKldhLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEAL 807
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK---ARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVA 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 808 RKQFQTERETAKKASQREVSELKKALDEANFRSVEVSRANRELR-HKATELEKVVNSNKEKLKNQRAQIKLHLSAKANNA 886
Cdd:pfam02463 545 ISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKV 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 887 QNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQrfvsEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELE 966
Cdd:pfam02463 625 VEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA----EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 967 NRCKELEETIRHLKRCKEATENKLKEASVESEQITANLEEahrwFKCRFDGLQLELTKNRLQRLPREDRWLEENQDMMHN 1046
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKL----LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
582-827 |
4.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 582 LSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEdresKKVGNFQKQLAEAKEDnckvti 661
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAE------ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 662 mLENVLASHSKMQGALEKVQIELGRRDSEIaglkkERSLNQQRVQKLEAEVDQWQA-RMLIVEAQHGSEIEPLQKSLDIT 740
Cdd:COG4942 85 -LAELEKEIAELRAELEAQKEELAELLRAL-----YRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 741 REDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKK 820
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1039730348 821 ASQREVS 827
Cdd:COG4942 239 AAERTPA 245
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
516-636 |
6.20e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 40.05 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 516 QGKVEKALEKITDSKNMLAYEKGKLQTKVKQLEAQLHTF-AETMLQKDHLHKLNKALEVKYTQANSEL------------ 582
Cdd:cd22656 109 DEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFeNQTEKDQTALETLEKALKDLLTDEGGAIarkeikdlqkel 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 583 -SASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAAlkesQKLKGDLKALED 636
Cdd:cd22656 189 eKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADL----TAADTDLDNLLA 239
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
421-654 |
6.25e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 421 QKELLESTIARLQGELKASLQEKKSLLEKNEWFQREVNKTEKEVAKekcnLEKELAESKEDINVLNQNLQTLMEEnkhLT 500
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEA----LQAEIDKLQAEIAEAEAEIEERREE---LG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 501 NKMASLEHHKATSDYqgkvekaLEKITDSKNmlayekgklqtkvkqleaqLHTFAETMLQKDHLHKLNKALevkytqaNS 580
Cdd:COG3883 90 ERARALYRSGGSVSY-------LDVLLGSES-------------------FSDFLDRLSALSKIADADADL-------LE 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 581 ELSASKAYLEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRESKKVGNFQKQLAEAKE 654
Cdd:COG3883 137 ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
796-1009 |
6.46e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 796 EAELHAERIEALRKQFQTERETAKKAsQREVSELKKALDEANFRSVEVSRANRELRHKATELEKVVNSNK---EKLKNQR 872
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL-KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 873 AQIKLHLSAKANNAQNMERMKQIEMELRQmEIIKDQYQKKNYEQSLSIQRfvsemntlQKEMELLTKSQYETSARNKQQE 952
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSP-EDFLDAVRRLQYLKYLAPAR--------REQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 953 LRLVAERKMRLELENRCKELE-------ETIRHLKRCKEATENKLKEASVESEQITANLEEAHR 1009
Cdd:COG4942 171 AERAELEALLAELEEERAALEalkaerqKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
672-810 |
6.48e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 672 KMQGALEKVQIELGRRDSEIAGLKKERSLNQQRVQKLEAEVDQWQARMLIVEAQHGS-----EIEPLQKSLDITREDNRK 746
Cdd:COG1579 28 ELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkEYEALQKEIESLKRRISD 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039730348 747 LAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQ 810
Cdd:COG1579 108 LEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
727-859 |
6.92e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 6.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 727 GSEIEPLQKSLDitrEDNRKLA-----MSLEQalQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEES-------- 793
Cdd:PRK09039 45 SREISGKDSALD---RLNSQIAeladlLSLER--QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGaaaegrag 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 794 KVEAELHAERIEALRKQFQTERETAKKAS-QREVSELKKALDEANFRSVEV--------SRANRELRHKATELEK 859
Cdd:PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAAlRRQLAALEAALDASEKRDRESqakiadlgRRLNVALAQRVQELNR 194
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
566-846 |
6.98e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.30 E-value: 6.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 566 KLNKALeVKYTQANSELSASKAylEQTEAHLKEMKSILGKNEEELAQAVKCRDAALKESQKLKGDLKALEDRES--KKVG 643
Cdd:PRK05771 54 KLSEAL-DKLRSYLPKLNPLRE--EKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIErlEPWG 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 644 NFqkqlaeakednckvTIMLENVLASHSkmqgalekVQIELGRRDSEIAGLKKERSlnQQRVQKLEAEVDQWQARMLIVE 723
Cdd:PRK05771 131 NF--------------DLDLSLLLGFKY--------VSVFVGTVPEDKLEELKLES--DVENVEYISTDKGYVYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 724 AQHGSEIEPLQKSLDITREDnrklamsleqaLQTNGHLQSKLDHLQEKLESKERERQS----LEAFKEQVAEESKVEAEL 799
Cdd:PRK05771 187 KELSDEVEEELKKLGFERLE-----------LEEEGTPSELIREIKEELEEIEKERESlleeLKELAKKYLEELLALYEY 255
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039730348 800 ---HAERIEALRKQFQTERETAKKA--SQREVSELKKALDEANFRSVEVSRA 846
Cdd:PRK05771 256 leiELERAEALSKFLKTDKTFAIEGwvPEDRVKKLKELIDKATGGSAYVEFV 307
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
122-507 |
8.00e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 122 LENLIQSLKMNIFHLQTEKESNpqKTAFLNDQLNIIQGEH-SKGLKLLQLEVMNLRQQLKVVKEEedrAQDEMQRLTATL 200
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQN--KRLWDRDTGNSITIDHlRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAI 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 201 EIATETKKNAAVIEEELKTTKRKMNLKIQEVHAlqeKCTALHSSMKTTQDLLAQEQRKNEDLGMT---ISQLKSDLNSR- 276
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKVVEELTA---KKMTLESSERTVSDLTASLQEKERAIEATnaeITKLRSRVDLKl 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 277 --------------------DNLICKLVEENKATQIsLKKEHE------------------ENIYLKSEILSLQDVSGKA 318
Cdd:pfam15921 531 qelqhlknegdhlrnvqtecEALKLQMAEKDKVIEI-LRQQIEnmtqlvgqhgrtagamqvEKAQLEKEINDRRLELQEF 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 319 QVLNDQLSKKCSELTSMLQVVKMENSRIIAEHQAILKVEQKMITETFQ----------------EQNLLLDAAHASITGE 382
Cdd:pfam15921 610 KILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQllnevktsrnelnslsEDYEVLKRNFRNKSEE 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 383 LQAVQNeKAQLQIHLDHLILEHNQCLQKSQEAEKRTVVQKEL-LESTIARLQGELKAsLQEKKSLLEKNewfQREVNKTE 461
Cdd:pfam15921 690 METTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgMQKQITAKRGQIDA-LQSKIQFLEEA---MTNANKEK 764
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1039730348 462 KEVAKEKCNLEKELAESKEDINVLNQNLQTLMEENKHLTNKMASLE 507
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
729-949 |
8.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 729 EIEPLQKSLDITREDNRKLAMSLEQALQTNGHLQSKLDHLQEKLESKERErqsLEAFKEQVAEESKVEAELHAERIEALR 808
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE---LAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 809 KQFQTERETAKKA--SQREVSELKKALdeANFRSVEVSRANR--ELRHKATELEKVVNSNKEKLKNQRAQIKLHLSAKAN 884
Cdd:COG4942 112 ALYRLGRQPPLALllSPEDFLDAVRRL--QYLKYLAPARREQaeELRADLAELAALRAELEAERAELEALLAELEEERAA 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 885 NAQNMERMKQIEMELRQMEIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNK 949
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
747-977 |
8.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 747 LAMSLEQALQTNGHLQSKLDHLQEKLESKERERQSLEAFKEQVAEE-SKVEAELHA--ERIEALRKQfQTERETAKKASQ 823
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQlAALERRIAAlaRRIRALEQE-LAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039730348 824 REVSELKKALDEanfRSVEVSRANREL-RHKATELEKVVNSNKEKLKNQRAQIKLhlsaKANNAQNMERMKQIEMELRQM 902
Cdd:COG4942 90 KEIAELRAELEA---QKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYL----KYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039730348 903 EIIKDQYQKKNYEQSLSIQRFVSEMNTLQKEMELLTKSQYETSARNKQQELRLVAERKMRLELENRCKELEETIR 977
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
761-836 |
9.26e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 9.26e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039730348 761 LQSKLDHLQEKLESKERERQSLEAFKEQVAEESKVEAEL---HAERIEALRKQFQTERETAKKASQREVSELKKALDEA 836
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLaaeLEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQA 225
|
|
| |
