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Conserved domains on  [gi|1039761342|ref|XP_017174612|]
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small kinetochore-associated protein isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ApoLp-III super family cl47968
Apolipophorin-III precursor (apoLp-III); This family consists of several insect ...
 169-270 9.14e-03

Apolipophorin-III precursor (apoLp-III); This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage.


The actual alignment was detected with superfamily member pfam07464:

Pssm-ID: 462172 [Multi-domain]  Cd Length: 143  Bit Score: 35.81  E-value: 9.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761342 169 EEELKDKNELLEAVNKQLHQKLTETQGELK----DLTQKV-ELLEKFQDNCLALL-ESKGLnpGQETLASKQEPTTDhtd 242
Cdd:pfam07464  44 QEELKKASGEAEEALKELNTKIVETADKLSeanpEVVQKAnELQEKFQSGVQSLVtESQKL--AKSISENSQGATEK--- 118

                          90       100
                  ....*....|....*....|....*...
gi 1039761342 243 smlLLETLKDELKVFNETAKKQMEELQG 270
Cdd:pfam07464 119 ---LQKATKQAYDDAVQAAQKLANQLQP 143
 
Name Accession Description Interval E-value
ApoLp-III pfam07464
Apolipophorin-III precursor (apoLp-III); This family consists of several insect ...
 169-270 9.14e-03

Apolipophorin-III precursor (apoLp-III); This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage.


Pssm-ID: 462172 [Multi-domain]  Cd Length: 143  Bit Score: 35.81  E-value: 9.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761342 169 EEELKDKNELLEAVNKQLHQKLTETQGELK----DLTQKV-ELLEKFQDNCLALL-ESKGLnpGQETLASKQEPTTDhtd 242
Cdd:pfam07464  44 QEELKKASGEAEEALKELNTKIVETADKLSeanpEVVQKAnELQEKFQSGVQSLVtESQKL--AKSISENSQGATEK--- 118

                          90       100
                  ....*....|....*....|....*...
gi 1039761342 243 smlLLETLKDELKVFNETAKKQMEELQG 270
Cdd:pfam07464 119 ---LQKATKQAYDDAVQAAQKLANQLQP 143
 
Name Accession Description Interval E-value
ApoLp-III pfam07464
Apolipophorin-III precursor (apoLp-III); This family consists of several insect ...
 169-270 9.14e-03

Apolipophorin-III precursor (apoLp-III); This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage.


Pssm-ID: 462172 [Multi-domain]  Cd Length: 143  Bit Score: 35.81  E-value: 9.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039761342 169 EEELKDKNELLEAVNKQLHQKLTETQGELK----DLTQKV-ELLEKFQDNCLALL-ESKGLnpGQETLASKQEPTTDhtd 242
Cdd:pfam07464  44 QEELKKASGEAEEALKELNTKIVETADKLSeanpEVVQKAnELQEKFQSGVQSLVtESQKL--AKSISENSQGATEK--- 118

                          90       100
                  ....*....|....*....|....*...
gi 1039761342 243 smlLLETLKDELKVFNETAKKQMEELQG 270
Cdd:pfam07464 119 ---LQKATKQAYDDAVQAAQKLANQLQP 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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