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Conserved domains on  [gi|1046907150|ref|XP_017457465|]
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EF-hand domain-containing family member C2 isoform X1 [Rattus norvegicus]

Protein Classification

EF-hand domain-containing family member C2( domain architecture ID 12218346)

EF-hand domain-containing family member C2 (EFHC2) is a protein with one predicted calcium-binding EF-hand motif and three DM10 domains, whose function is unknown

Gene Symbol:  EFHC2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 42-149 5.37e-41

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


:

Pssm-ID: 128921  Cd Length: 104  Bit Score: 145.15  E-value: 5.37e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150   42 DKQVLSFDAYLEDEVPDKrqenFRIRYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYTVYDFNI 121
Cdd:smart00676   1 DKKVLRFDAYWEDPVAMF----YLIRRFKIYYYLEDDTIEVFEPDVRNSGILQGTFLRRQRVPKPPPDDPEYYHASDLNV 76

                           90       100
                   ....*....|....*....|....*...
gi 1046907150  122 NISVVFYGRTFKIYDCDPFTKNFLRKIG 149
Cdd:smart00676  77 GTTINVFGRQFRIYDCDEFTRNYLESKG 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 186-327 5.33e-36

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


:

Pssm-ID: 461948  Cd Length: 104  Bit Score: 131.05  E-value: 5.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 186 LKRFLQYDGKVLRFFCLWDD-SASLFGDRREFVLHYFLCDDTIEIREILPSNSGRdAMSSFLRRSKLPKFGPPGiyqpgq 264
Cdd:pfam06565   1 LPKFLENDRKVLRFYAYWDDpTESPEDEYRKFVISYYLADDTIEIFEPPVRNSGR-PGGKFLKRQRIPKPGTGG------ 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046907150 265 itdravlnvygglsewradgylldkyqlgkieQDFYTDQDLSIGATINVWGRKVLLCDCDEFT 327
Cdd:pfam06565  74 --------------------------------PEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 385-496 5.63e-35

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


:

Pssm-ID: 461948  Cd Length: 104  Bit Score: 127.97  E-value: 5.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 385 FRKFMELDSfgnvsNILRYFAKLITHKCADVD--RMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGqevfk 462
Cdd:pfam06565   1 LPKFLENDR-----KVLRFYAYWDDPTESPEDeyRKFVISYYLADDTIEIFEPPVRNSGRPGGKFLKRQRIPKPG----- 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046907150 463 SEFSEYVKAEELYIGATVNINGYLFLLLNADEYT 496
Cdd:pfam06565  71 TGGPEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
 
Name Accession Description Interval E-value
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 42-149 5.37e-41

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 145.15  E-value: 5.37e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150   42 DKQVLSFDAYLEDEVPDKrqenFRIRYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYTVYDFNI 121
Cdd:smart00676   1 DKKVLRFDAYWEDPVAMF----YLIRRFKIYYYLEDDTIEVFEPDVRNSGILQGTFLRRQRVPKPPPDDPEYYHASDLNV 76

                           90       100
                   ....*....|....*....|....*...
gi 1046907150  122 NISVVFYGRTFKIYDCDPFTKNFLRKIG 149
Cdd:smart00676  77 GTTINVFGRQFRIYDCDEFTRNYLESKG 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 186-327 5.33e-36

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 131.05  E-value: 5.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 186 LKRFLQYDGKVLRFFCLWDD-SASLFGDRREFVLHYFLCDDTIEIREILPSNSGRdAMSSFLRRSKLPKFGPPGiyqpgq 264
Cdd:pfam06565   1 LPKFLENDRKVLRFYAYWDDpTESPEDEYRKFVISYYLADDTIEIFEPPVRNSGR-PGGKFLKRQRIPKPGTGG------ 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046907150 265 itdravlnvygglsewradgylldkyqlgkieQDFYTDQDLSIGATINVWGRKVLLCDCDEFT 327
Cdd:pfam06565  74 --------------------------------PEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 36-141 4.41e-35

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 128.36  E-value: 4.41e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  36 PSWVAFDKQVLSFDAYLeDEVPDKRQENFRirYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYT 115
Cdd:pfam06565   2 PKFLENDRKVLRFYAYW-DDPTESPEDEYR--KFVISYYLADDTIEIFEPPVRNSGRPGGKFLKRQRIPKPGTGGPEYYT 78

                          90       100
                  ....*....|....*....|....*.
gi 1046907150 116 VYDFNINISVVFYGRTFKIYDCDPFT 141
Cdd:pfam06565  79 PKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 385-496 5.63e-35

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 127.97  E-value: 5.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 385 FRKFMELDSfgnvsNILRYFAKLITHKCADVD--RMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGqevfk 462
Cdd:pfam06565   1 LPKFLENDR-----KVLRFYAYWDDPTESPEDeyRKFVISYYLADDTIEIFEPPVRNSGRPGGKFLKRQRIPKPG----- 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046907150 463 SEFSEYVKAEELYIGATVNINGYLFLLLNADEYT 496
Cdd:pfam06565  71 TGGPEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 398-504 2.79e-32

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 120.49  E-value: 2.79e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  398 SNILRYFAKLITHKC-ADVDRMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGQEVfksefSEYVKAEELYI 476
Cdd:smart00676   2 KKVLRFDAYWEDPVAmFYLIRRFKIYYYLEDDTIEVFEPDVRNSGILQGTFLRRQRVPKPPPDD-----PEYYHASDLNV 76

                           90       100
                   ....*....|....*....|....*...
gi 1046907150  477 GATVNINGYLFLLLNADEYTLNYMESNT 504
Cdd:smart00676  77 GTTINVFGRQFRIYDCDEFTRNYLESKG 104
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 193-335 1.45e-30

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 115.49  E-value: 1.45e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  193 DGKVLRFFCLWDDSASLFGDRREFVLHYFLCDDTIEIREILPSNSGRDAmSSFLRRSKLPKFGPpgiyqpgqitdravln 272
Cdd:smart00676   1 DKKVLRFDAYWEDPVAMFYLIRRFKIYYYLEDDTIEVFEPDVRNSGILQ-GTFLRRQRVPKPPP---------------- 63

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046907150  273 vygglsewradgylldkyqlgkIEQDFYTDQDLSIGATINVWGRKVLLCDCDEFTKTYYKTKY 335
Cdd:smart00676  64 ----------------------DDPEYYHASDLNVGTTINVFGRQFRIYDCDEFTRNYLESKG 104
 
Name Accession Description Interval E-value
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 42-149 5.37e-41

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 145.15  E-value: 5.37e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150   42 DKQVLSFDAYLEDEVPDKrqenFRIRYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYTVYDFNI 121
Cdd:smart00676   1 DKKVLRFDAYWEDPVAMF----YLIRRFKIYYYLEDDTIEVFEPDVRNSGILQGTFLRRQRVPKPPPDDPEYYHASDLNV 76

                           90       100
                   ....*....|....*....|....*...
gi 1046907150  122 NISVVFYGRTFKIYDCDPFTKNFLRKIG 149
Cdd:smart00676  77 GTTINVFGRQFRIYDCDEFTRNYLESKG 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 186-327 5.33e-36

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 131.05  E-value: 5.33e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 186 LKRFLQYDGKVLRFFCLWDD-SASLFGDRREFVLHYFLCDDTIEIREILPSNSGRdAMSSFLRRSKLPKFGPPGiyqpgq 264
Cdd:pfam06565   1 LPKFLENDRKVLRFYAYWDDpTESPEDEYRKFVISYYLADDTIEIFEPPVRNSGR-PGGKFLKRQRIPKPGTGG------ 73

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046907150 265 itdravlnvygglsewradgylldkyqlgkieQDFYTDQDLSIGATINVWGRKVLLCDCDEFT 327
Cdd:pfam06565  74 --------------------------------PEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 36-141 4.41e-35

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 128.36  E-value: 4.41e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  36 PSWVAFDKQVLSFDAYLeDEVPDKRQENFRirYYKIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYT 115
Cdd:pfam06565   2 PKFLENDRKVLRFYAYW-DDPTESPEDEYR--KFVISYYLADDTIEIFEPPVRNSGRPGGKFLKRQRIPKPGTGGPEYYT 78

                          90       100
                  ....*....|....*....|....*.
gi 1046907150 116 VYDFNINISVVFYGRTFKIYDCDPFT 141
Cdd:pfam06565  79 PKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10_dom pfam06565
DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 ...
 385-496 5.63e-35

DM10 domain; This entry represents the DM10 domain, which consists of approximately 105 residues whose function is unknown. It has been identified in nucleoside diphosphate kinases, namely Nucleoside diphosphate kinase 7 (NDK7), which contain a single copy of the DM10 domain, and in uncharacterized proteins including Rib72 from Chlamydomonas and EF-hand domain-containing protein 1/EF-hand domain-containing family member C2 (EFHC1/2) from mammals, which contain multiple copies of DM10 domains. In Chlamydomonas, and possibly mammals, DM10 domain-containing proteins are tightly bound to the flagellar doublet microtubules. This suggests that DM10 domains might act as flagellar NDK regulatory modules or as units specifically involved in axonemal targeting or assembly. This domain have a PH-like fold which includes seven beta strands, with a short 3-4 residue helix after the first strand, and a more extended alpha helical region at the C terminus.


Pssm-ID: 461948  Cd Length: 104  Bit Score: 127.97  E-value: 5.63e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150 385 FRKFMELDSfgnvsNILRYFAKLITHKCADVD--RMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGqevfk 462
Cdd:pfam06565   1 LPKFLENDR-----KVLRFYAYWDDPTESPEDeyRKFVISYYLADDTIEIFEPPVRNSGRPGGKFLKRQRIPKPG----- 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1046907150 463 SEFSEYVKAEELYIGATVNINGYLFLLLNADEYT 496
Cdd:pfam06565  71 TGGPEYYTPKDLYVGATVNIYGRRFLLYDCDEFT 104
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 398-504 2.79e-32

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 120.49  E-value: 2.79e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  398 SNILRYFAKLITHKC-ADVDRMFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGQEVfksefSEYVKAEELYI 476
Cdd:smart00676   2 KKVLRFDAYWEDPVAmFYLIRRFKIYYYLEDDTIEVFEPDVRNSGILQGTFLRRQRVPKPPPDD-----PEYYHASDLNV 76

                           90       100
                   ....*....|....*....|....*...
gi 1046907150  477 GATVNINGYLFLLLNADEYTLNYMESNT 504
Cdd:smart00676  77 GTTINVFGRQFRIYDCDEFTRNYLESKG 104
DM10 smart00676
Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some ...
 193-335 1.45e-30

Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases;


Pssm-ID: 128921  Cd Length: 104  Bit Score: 115.49  E-value: 1.45e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046907150  193 DGKVLRFFCLWDDSASLFGDRREFVLHYFLCDDTIEIREILPSNSGRDAmSSFLRRSKLPKFGPpgiyqpgqitdravln 272
Cdd:smart00676   1 DKKVLRFDAYWEDPVAMFYLIRRFKIYYYLEDDTIEVFEPDVRNSGILQ-GTFLRRQRVPKPPP---------------- 63

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046907150  273 vygglsewradgylldkyqlgkIEQDFYTDQDLSIGATINVWGRKVLLCDCDEFTKTYYKTKY 335
Cdd:smart00676  64 ----------------------DDPEYYHASDLNVGTTINVFGRQFRIYDCDEFTRNYLESKG 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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