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Conserved domains on  [gi|1133466972|ref|XP_019853878|]
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PREDICTED: uncharacterized protein LOC109583125 [Amphimedon queenslandica]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
90-206 4.22e-37

Avidin family;


:

Pssm-ID: 460182  Cd Length: 113  Bit Score: 125.11  E-value: 4.22e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133466972  90 LAGVWTNELGSKMFISASSyAEGQINGLYCSKVGDAYD---YYDLNGLYDTDGDETsgTLGWTVQWNNgpngnSQSNTAW 166
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVS-SNGEITGTYRTAVGTTGGgikPSPLVGWQAGDNTGP--TFGFTVNWDN-----SDSTTAW 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1133466972 167 SGQRYEISGKLYIYTTWLLVSQ-ETLENNWESTLTGKDKFC 206
Cdd:pfam01382  73 TGQCFICNGKEVLKTTWLLRSSvSSCEDDWKATRVGQDTFT 113
EFh_parvalbumin_like super family cl25356
EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes ...
2-63 1.57e-04

EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes alpha- and beta-parvalbumins, and a group of uncharacterized calglandulin-like proteins. Parvalbumins are small, acidic, cytosolic EF-hand-containing Ca2+-buffer and Ca2+ transporter/shuttle proteins belonging to EF-hand superfamily. They are expressed by vertebrates in fast-twitch muscle cells, specific neurons of the central and peripheral nervous system, sensory cells of the mammalian auditory organ (Corti's cell), and some other cells, and characterized by the presence of three consecutive EF-hand motifs (helix-loop-helix) called AB, CD, and EF, but only CD and EF can chelate metal ions, such as Ca2+ and Mg2+. Thus, they may play an additional role in Mg2+ handling. Moreover, parvalbumins represent one of the major animal allergens. In metal-bound states, parvalbumins possess a rigid and stable tertiary structure and display strong allergenicity. In contrast, the metal-free parvalbumins are intrinsically disordered, and the loss of metal ions results in a conformational change that decreases their IgE binding capacity. Furthermore, parvalbumins have been widely used as a neuronal marker for a variety of functional brain systems. They also function as a Ca2+ shuttle transporting Ca2+ from troponin-C (TnC) to the sarcoplasmic reticulum (SR) Ca2+ pump during muscle relaxation. Thus they may facilitate myocardial relaxation and play important roles in cardiac diastolic dysfunction. Parvalbumins consists of alpha- and beta- sublineages, which can be distinguished on the basis of isoelectric point (pI > 5 for alpha; pI


The actual alignment was detected with superfamily member cd16251:

Pssm-ID: 330177 [Multi-domain]  Cd Length: 101  Bit Score: 39.44  E-value: 1.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1133466972   2 TALNLKKSFEEADKEKAGFIKYNGLQAVLNSLDAFG-ACTARKVIALI--GKT---GKISLDELQHIC 63
Cdd:cd16251    32 SEDQIKKVFQILDKDKSGFIEEEELKYILKGFSIAGrDLTDEETKALLaaGDTdgdGKIGVEEFATLV 99
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
90-206 4.22e-37

Avidin family;


Pssm-ID: 460182  Cd Length: 113  Bit Score: 125.11  E-value: 4.22e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133466972  90 LAGVWTNELGSKMFISASSyAEGQINGLYCSKVGDAYD---YYDLNGLYDTDGDETsgTLGWTVQWNNgpngnSQSNTAW 166
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVS-SNGEITGTYRTAVGTTGGgikPSPLVGWQAGDNTGP--TFGFTVNWDN-----SDSTTAW 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1133466972 167 SGQRYEISGKLYIYTTWLLVSQ-ETLENNWESTLTGKDKFC 206
Cdd:pfam01382  73 TGQCFICNGKEVLKTTWLLRSSvSSCEDDWKATRVGQDTFT 113
EFh_parvalbumin_like cd16251
EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes ...
2-63 1.57e-04

EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes alpha- and beta-parvalbumins, and a group of uncharacterized calglandulin-like proteins. Parvalbumins are small, acidic, cytosolic EF-hand-containing Ca2+-buffer and Ca2+ transporter/shuttle proteins belonging to EF-hand superfamily. They are expressed by vertebrates in fast-twitch muscle cells, specific neurons of the central and peripheral nervous system, sensory cells of the mammalian auditory organ (Corti's cell), and some other cells, and characterized by the presence of three consecutive EF-hand motifs (helix-loop-helix) called AB, CD, and EF, but only CD and EF can chelate metal ions, such as Ca2+ and Mg2+. Thus, they may play an additional role in Mg2+ handling. Moreover, parvalbumins represent one of the major animal allergens. In metal-bound states, parvalbumins possess a rigid and stable tertiary structure and display strong allergenicity. In contrast, the metal-free parvalbumins are intrinsically disordered, and the loss of metal ions results in a conformational change that decreases their IgE binding capacity. Furthermore, parvalbumins have been widely used as a neuronal marker for a variety of functional brain systems. They also function as a Ca2+ shuttle transporting Ca2+ from troponin-C (TnC) to the sarcoplasmic reticulum (SR) Ca2+ pump during muscle relaxation. Thus they may facilitate myocardial relaxation and play important roles in cardiac diastolic dysfunction. Parvalbumins consists of alpha- and beta- sublineages, which can be distinguished on the basis of isoelectric point (pI > 5 for alpha; pI


Pssm-ID: 319994 [Multi-domain]  Cd Length: 101  Bit Score: 39.44  E-value: 1.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1133466972   2 TALNLKKSFEEADKEKAGFIKYNGLQAVLNSLDAFG-ACTARKVIALI--GKT---GKISLDELQHIC 63
Cdd:cd16251    32 SEDQIKKVFQILDKDKSGFIEEEELKYILKGFSIAGrDLTDEETKALLaaGDTdgdGKIGVEEFATLV 99
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
90-206 4.22e-37

Avidin family;


Pssm-ID: 460182  Cd Length: 113  Bit Score: 125.11  E-value: 4.22e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1133466972  90 LAGVWTNELGSKMFISASSyAEGQINGLYCSKVGDAYD---YYDLNGLYDTDGDETsgTLGWTVQWNNgpngnSQSNTAW 166
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVS-SNGEITGTYRTAVGTTGGgikPSPLVGWQAGDNTGP--TFGFTVNWDN-----SDSTTAW 72
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1133466972 167 SGQRYEISGKLYIYTTWLLVSQ-ETLENNWESTLTGKDKFC 206
Cdd:pfam01382  73 TGQCFICNGKEVLKTTWLLRSSvSSCEDDWKATRVGQDTFT 113
EFh_parvalbumin_like cd16251
EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes ...
2-63 1.57e-04

EF-hand, calcium binding motif, found in parvalbumin-like EF-hand family; The family includes alpha- and beta-parvalbumins, and a group of uncharacterized calglandulin-like proteins. Parvalbumins are small, acidic, cytosolic EF-hand-containing Ca2+-buffer and Ca2+ transporter/shuttle proteins belonging to EF-hand superfamily. They are expressed by vertebrates in fast-twitch muscle cells, specific neurons of the central and peripheral nervous system, sensory cells of the mammalian auditory organ (Corti's cell), and some other cells, and characterized by the presence of three consecutive EF-hand motifs (helix-loop-helix) called AB, CD, and EF, but only CD and EF can chelate metal ions, such as Ca2+ and Mg2+. Thus, they may play an additional role in Mg2+ handling. Moreover, parvalbumins represent one of the major animal allergens. In metal-bound states, parvalbumins possess a rigid and stable tertiary structure and display strong allergenicity. In contrast, the metal-free parvalbumins are intrinsically disordered, and the loss of metal ions results in a conformational change that decreases their IgE binding capacity. Furthermore, parvalbumins have been widely used as a neuronal marker for a variety of functional brain systems. They also function as a Ca2+ shuttle transporting Ca2+ from troponin-C (TnC) to the sarcoplasmic reticulum (SR) Ca2+ pump during muscle relaxation. Thus they may facilitate myocardial relaxation and play important roles in cardiac diastolic dysfunction. Parvalbumins consists of alpha- and beta- sublineages, which can be distinguished on the basis of isoelectric point (pI > 5 for alpha; pI


Pssm-ID: 319994 [Multi-domain]  Cd Length: 101  Bit Score: 39.44  E-value: 1.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1133466972   2 TALNLKKSFEEADKEKAGFIKYNGLQAVLNSLDAFG-ACTARKVIALI--GKT---GKISLDELQHIC 63
Cdd:cd16251    32 SEDQIKKVFQILDKDKSGFIEEEELKYILKGFSIAGrDLTDEETKALLaaGDTdgdGKIGVEEFATLV 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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