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Conserved domains on  [gi|1190947197|ref|XP_020866964|]
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uncharacterized protein LOC110224691 [Arabidopsis lyrata subsp. lyrata]

Protein Classification

DUF1262 domain-containing protein( domain architecture ID 10536391)

DUF1262 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-123 1.43e-57

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


:

Pssm-ID: 462025  Cd Length: 101  Bit Score: 182.83  E-value: 1.43e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1190947197  23 EGPNSGVLVIQDEDSKP--TCCFGTCYDGELKGLPFPQNAKLTVTYRTGtgNDRRSYHDPVLFIPVLDQPYYSNRYYVIK 100
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPtsTCCFGLCKDTRVRGLPFPQNKILTVKYTTG--DSSTTSSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 1190947197 101 RRGKQSGGASASAKEEDRVPCCF 123
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-123 1.43e-57

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


Pssm-ID: 462025  Cd Length: 101  Bit Score: 182.83  E-value: 1.43e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1190947197  23 EGPNSGVLVIQDEDSKP--TCCFGTCYDGELKGLPFPQNAKLTVTYRTGtgNDRRSYHDPVLFIPVLDQPYYSNRYYVIK 100
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPtsTCCFGLCKDTRVRGLPFPQNKILTVKYTTG--DSSTTSSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 1190947197 101 RRGKQSGGASASAKEEDRVPCCF 123
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Name Accession Description Interval E-value
DUF1262 pfam06880
Protein of unknown function (DUF1262); This family represents a conserved region within a ...
 23-123 1.43e-57

Protein of unknown function (DUF1262); This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.


Pssm-ID: 462025  Cd Length: 101  Bit Score: 182.83  E-value: 1.43e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1190947197  23 EGPNSGVLVIQDEDSKP--TCCFGTCYDGELKGLPFPQNAKLTVTYRTGtgNDRRSYHDPVLFIPVLDQPYYSNRYYVIK 100
Cdd:pfam06880   1 EGPNSGYLVIQDEESEPtsTCCFGLCKDTRVRGLPFPQNKILTVKYTTG--DSSTTSSDPVVFIPVLGQPLSSNRYYVIK 78

                          90       100
                  ....*....|....*....|...
gi 1190947197 101 RRGKQSGGASASAKEEDRVPCCF 123
Cdd:pfam06880  79 AKGKHKGLASTCSKEEDKTTCCF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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