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Conserved domains on  [gi|1239643072|ref|XP_022234935|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Coprinopsis cinerea okayama7#130]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-111 1.20e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


:

Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  19 LGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIV 98
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPV-GDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAI 79

                          90
                  ....*....|...
gi 1239643072  99 LTIGFILEIGSGA 111
Cdd:pfam00507  80 LLVGLVYAWKKGA 92
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-111 1.20e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  19 LGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIV 98
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPV-GDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAI 79

                          90
                  ....*....|...
gi 1239643072  99 LTIGFILEIGSGA 111
Cdd:pfam00507  80 LLVGLVYAWKKGA 92
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-111 1.50e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.48  E-value: 1.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   4 LFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQ 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGD-ARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                          90       100
                  ....*....|....*....|....*...
gi 1239643072  84 VSSFGFTIGIIFFIVLTIGFILEIGSGA 111
Cdd:COG0838    87 LGWFGLIEMLVFIAILLVGLIYAWKKGA 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-106 5.48e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 80.88  E-value: 5.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   3 NLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLY 82
Cdd:MTH00018    2 GLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPF-GFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100
                  ....*....|....*....|....
gi 1239643072  83 QVSSFGFTIGIIFFIVLTIGFILE 106
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYE 104
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-111 1.20e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 89.79  E-value: 1.20e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  19 LGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIV 98
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPV-GDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAI 79

                          90
                  ....*....|...
gi 1239643072  99 LTIGFILEIGSGA 111
Cdd:pfam00507  80 LLVGLVYAWKKGA 92
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-111 1.50e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 82.48  E-value: 1.50e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   4 LFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQ 83
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGD-ARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                          90       100
                  ....*....|....*....|....*...
gi 1239643072  84 VSSFGFTIGIIFFIVLTIGFILEIGSGA 111
Cdd:COG0838    87 LGWFGLIEMLVFIAILLVGLIYAWKKGA 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-106 5.48e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 80.88  E-value: 5.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   3 NLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLY 82
Cdd:MTH00018    2 GLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPF-GFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80

                          90       100
                  ....*....|....*....|....
gi 1239643072  83 QVSSFGFTIGIIFFIVLTIGFILE 106
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYE 104
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 4-111 9.07e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 77.98  E-value: 9.07e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   4 LFFLIIFIpILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQ 83
Cdd:PRK06602   12 LIFLIVAI-GLGILLLVAGKLLGPRAPDREKNSPYESGFEAF-GDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFRE 89

                          90       100
                  ....*....|....*....|....*...
gi 1239643072  84 VSSFGFTIGIIFFIVLTIGFILEIGSGA 111
Cdd:PRK06602   90 IGWLGFVEAMIFILVLLVGLVYLWRKGA 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 3-106 1.15e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 75.13  E-value: 1.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   3 NLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLY 82
Cdd:MTH00055    7 GIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPF-ESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                          90       100
                  ....*....|....*....|....
gi 1239643072  83 QVSSFGFTIGIIFFIVLTIGFILE 106
Cdd:MTH00055   86 QIGLFGFWVMYLFLIILTIGLIYE 109
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-111 4.29e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 66.06  E-value: 4.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   2 NNLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLA-VT 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGS-ARLPFSIRFFLVAILFLLFDLEIALLLPLPwAI 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1239643072  81 LYQVSSFGFTIGIIFFIVLTIGFILEIGSGA 111
Cdd:MTH00113   80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGG 110
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-106 1.61e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 64.62  E-value: 1.61e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPL-AV 79
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPL-NSARLPFSFRFFLVAILFLLFDLEIALLFPLpPA 79

                          90       100
                  ....*....|....*....|....*..
gi 1239643072  80 TLYQVSSFGFTIGIIFFIVLTIGFILE 106
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYE 106
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-112 1.33e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 62.18  E-value: 1.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILAFILLGVNILLAVH-RPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAV 79
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRsYSDREKSSPFECGFDPISS-ARSPFSLRFFLLAILFLVFDVEIVLLFPVLQ 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1239643072  80 TLYQVSSFGFTIG-IIFFIVLTIGFILEIGSGAI 112
Cdd:MTH00148   80 SLGSSFSVWSLTSlFIFLLILILGLFHEWNEGSL 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-111 4.71e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 60.68  E-value: 4.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAVT 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGS-ARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1239643072  81 LyQVSSFGFTIGIIFFIVLTIGFILEIGSGA 111
Cdd:MTH00203   80 N-QLSSLSLLLAFLFLILLTLGLIYEWLQGG 109
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
6-104 1.56e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 57.06  E-value: 1.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   6 FLIIFIPILAFILLGVNIL-----LAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAVT 80
Cdd:PRK07756    9 YMIVLIFLLLGILLPVVALtlgrmLRPNKPSAAKATTYESGIEPFHD-ANIRFHARYYIFALLFVIFDVETLFLYPWAVA 87

                          90       100
                  ....*....|....*....|....
gi 1239643072  81 LYQVSSFGFTIGIIFFIVLTIGFI 104
Cdd:PRK07756   88 YDKLGLFALIEMLIFVVMLLVGLA 111
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 3-106 4.67e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 55.70  E-value: 4.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   3 NLFFLIIFIPI-LAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTl 81
Cdd:MTH00136    2 NLITTILTITIaLSLILAIVSFWLPQMTPDHEKLSPYECGFDPL-GSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG- 79

                          90       100
                  ....*....|....*....|....*..
gi 1239643072  82 YQVSS--FGFTIGIIFFIVLTIGFILE 106
Cdd:MTH00136   80 DQLPSplLTFFWATAVLILLTLGLIYE 106
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 10-106 5.98e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.45  E-value: 5.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  10 FIPILAFILLG---------VNILLAVHRPDEAKVSAYECGFLALPDQTRS-TFQIHFMIVALLFLIFDLELVLLFPLAV 79
Cdd:PRK07928    4 YIPILVLGALAaafavvsvvVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgRFPVKYYLTAMLFIVFDIEIVFLYPWAV 83

                          90       100
                  ....*....|....*....|....*..
gi 1239643072  80 TLYQVSSFGFTIGIIFFIVLTIGFILE 106
Cdd:PRK07928   84 SFDALGVFGLVEMALFMLTVFVAYAYV 110
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 13-106 7.56e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 55.00  E-value: 7.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  13 ILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLA-VTLYQVSSFGFTI 91
Cdd:MTH00069   11 ILSLILITISFWLPLNNPDSEKLSPYECGFDPL-GSARLPFSIRFFLVAILFLLFDLEIALLLPTPwASQLNTPTNTLFW 89

                          90
                  ....*....|....*
gi 1239643072  92 GIIFFIVLTIGFILE 106
Cdd:MTH00069   90 STLILILLTLGLIYE 104
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 22-112 2.23e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 54.17  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  22 NILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIVLTI 101
Cdd:MTH00030   31 NSRIGLTKPDSEKSSIYECGFDPF-GKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAI 109

                          90
                  ....*....|.
gi 1239643072 102 GFILEIGSGAI 112
Cdd:MTH00030  110 GLAYEWIKGGL 120
ndhC CHL00022
NADH dehydrogenase subunit 3
 4-104 3.13e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.45  E-value: 3.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   4 LFFLII--FIPILAFILLGvniLLAVHRPDEAKVSAYECGFLALPDqTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTL 81
Cdd:CHL00022   11 WAFLIIssLIPILAFLISG---LLAPISKGPEKLSSYESGIEPMGD-AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86

                          90       100
                  ....*....|....*....|...
gi 1239643072  82 YQVSSFGFTIGIIFFIVLTIGFI 104
Cdd:CHL00022   87 DVLGVSAFIEALIFVLILIVGLV 109
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
25-111 6.57e-10

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 52.75  E-value: 6.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072  25 LAVHRPDEAKVSAYECGFLALPDQTRstFQIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIVLTIGFI 104
Cdd:PRK08489   38 LAQKNTEKLKLAIYECGPEPVKQPNR--ISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFI 115


                  ....*..
gi 1239643072 105 LEIGSGA 111
Cdd:PRK08489  116 YAWKKGA 122
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-112 3.33e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 50.55  E-value: 3.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   3 NLFFLIIFIPILAFILLGVNILLAVHRP-DEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVTL 81
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPK-SSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIF 79

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1239643072  82 YQVSSFGFTI-GIIFFIVLTIGFILEIGSGAI 112
Cdd:MTH00161   80 KTSNMMSWLItSSFFILILLLGLYYEWNQGAL 111
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-112 6.45e-08

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 47.55  E-value: 6.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILafILLGVNILLAVHRPDEAKVSAYECGFLalPDQT-RSTFQIHFMIVALLFLIFDLELVLLFPLAV 79
Cdd:MTH00012    4 MMIPMMISLILPPL--VLGAAWVLAARSTADREKTSPFECGFD--PHKTaRIPFSLRFFLLAIIFIVFDIEIVLLMPVPT 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1239643072  80 TLYQVSSFGFTIG-IIFFIVLTIGFILEIGSGAI 112
Cdd:MTH00012   80 ILMTSTSKTVVYTsILFLLILVIGLIHEWREGSL 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 1.10e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 46.91  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILAFILLGVNILLAVH-RPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAV 79
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRsLMDREKSSPFECGFDPK-ESARLPFSMRFFLLAVIFLVFDIEIALLLPLPL 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1239643072  80 TLYQVSSFGFTIGI-IFFIVLTIGFILEIGSGAIG 113
Cdd:MTH00202   80 VLKSSWSKGGLLGGtIFLLILIGGLIHEWKEGSLD 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-101 3.11e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239643072   1 MNNLFFLIIFIPILAFILLGVNILLAVHRPDEAKVSAYECGFLALpDQTRSTFQIHFMIVALLFLIFDLELVLLFPLAVT 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESV-GKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100
                  ....*....|....*....|.
gi 1239643072  81 LyqVSSFGFTIGIIFFIVLTI 101
Cdd:MTH00092   80 D--FSSLISFFMLMIFIFFGF 98
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 31-98 4.22e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 34.79  E-value: 4.22e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239643072  31 DEAKVSAYECGFLALPDQTRSTFqIHFMIVALLFLIFDLELVLLFPLAVTLYQVSSFGFTIGIIFFIV 98
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSI-NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAM 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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