|
Name |
Accession |
Description |
Interval |
E-value |
| HX |
cd00094 |
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. ... |
1143-1403 |
1.17e-44 |
|
Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Pssm-ID: 238046 [Multi-domain] Cd Length: 194 Bit Score: 160.17 E-value: 1.17e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 1143 TNICNGKPVDGLTTLRnGTLVAFRGHYFWMLSPFSPPSPARRITEVW-GIPSPIDTVFTRCNcEGKTFFFKDSQYWRFTN 1221
Cdd:cd00094 1 PDACDPLSFDAVTTLR-GELYFFKGRYFWRLSPGKPPGSPFLISSFWpSLPSPVDAAFERPD-TGKIYFFKGDKYWVYTG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 1222 DIKDAGYPKPIFK-GFGGLTGQIVAALSTAKyknwPESVYFFKRGGSIQQYIYKQEPVQKCPgrrpalnypvygettqvr 1300
Cdd:cd00094 79 KNLEPGYPKPISDlGFPPTVKQIDAALRWPD----NGKTYFFKGDKYWRYDEKTQKMDPGYP------------------ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 1301 rRRFERAigpsqthtiriqysparlayqdkgvlhnevkvsilWRGLPNVVTSAislpnIRKPDGYdYYAFSKDQYYNIDV 1380
Cdd:cd00094 137 -KLIETD-----------------------------------FPGVPDKVDAA-----FRWLDGY-YYFFKGDQYWRFDP 174
|
250 260
....*....|....*....|...
gi 1370451476 1381 PSRTARAITTRSGqtlSKVWYNC 1403
Cdd:cd00094 175 RSKEVRVGYPLKI---SSDWLGC 194
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
374-839 |
4.66e-26 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 117.35 E-value: 4.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 374 APTTPKEPAPTTTKSAPttPKEPAP-------------TTTKEPAPTTPKEPAPtttkePAPTTTKSAPttPKEPAPtTP 440
Cdd:PHA03247 2508 APPAPSRLAPAILPDEP--VGEPVHprmltwirgleelASDDAGDPPPPLPPAA-----PPAAPDRSVP--PPRPAP-RP 2577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 441 KKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAP-------------TTPKEPAPTTPKEPA 507
Cdd:PHA03247 2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPspspaanepdphpPPTVPPPERPRDDPA 2657
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 508 PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPT-----TPKEPAPTTPKKPAPTTPK 582
Cdd:PHA03247 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHalvsaTPLPPGPAAARQASPALPA 2737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 583 EPAP----TTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPeelapttpeEPTP 658
Cdd:PHA03247 2738 APAPpavpAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP---------ADPP 2808
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 659 TTPEEPAPTTPKAAAPNTPkEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGT----APTTLKEPAPTTPKKPAPKELA 734
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLA 2887
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 735 PTTTKEPTSTTSDKP-APTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTST 813
Cdd:PHA03247 2888 RPAVSRSTESFALPPdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL 2967
|
490 500
....*....|....*....|....*..
gi 1370451476 814 TSDKPAPTTPKETAPTTPKE-PAPTTP 839
Cdd:PHA03247 2968 VPGRVAVPRFRVPQPAPSREaPASSTP 2994
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
397-907 |
6.15e-25 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 113.88 E-value: 6.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 397 APTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKpapTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAP 476
Cdd:PHA03247 2477 APVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPD---EPVGEPVHPRMLTWIRGLEELASDDAGDPPP 2553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 477 TTPKEPAPTAPKKPAPttPKEPAPtTPKEPAPTTTKE-----PSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKE 551
Cdd:PHA03247 2554 PLPPAAPPAAPDRSVP--PPRPAP-RPSEPAVTSRARrpdapPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 552 PSPTTTKEPAPTTPKEPAPTTPKK-PAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPE 630
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVPPPERPRDdPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEP 2710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 631 KLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPaPTTPKEPAPTTPKEPAPTTPKETAPTTPK 710
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 711 GTAPTTLKEPAPTTPKK-PAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTT-----------------PKE 772
Cdd:PHA03247 2790 SLSESRESLPSPWDPADpPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrpPSR 2869
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 773 PAPTTPKGTA-PTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPP 851
Cdd:PHA03247 2870 SPAAKPAAPArPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1370451476 852 PTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAAT 907
Cdd:PHA03247 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005
|
|
| SO |
smart00201 |
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ... |
66-108 |
1.15e-19 |
|
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.
Pssm-ID: 197571 Cd Length: 43 Bit Score: 83.19 E-value: 1.15e-19
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1370451476 66 AELSCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFCAEVH 108
Cdd:smart00201 1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
376-769 |
6.86e-19 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 93.85 E-value: 6.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 376 TTPKEPAPTTTKSAPTTPKEPAPTTTKEPaPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPaPTTPKKPAPTTPKEPAPTT 455
Cdd:PHA03247 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPP-ERPRDDPAPGRVSRPRRARRLGRAAQASSP-PQRPRRRAARPTVGSLTSL 2698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 456 PKEPTPTTPKEPApttkePAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTK 535
Cdd:PHA03247 2699 ADPPPPPPTPEPA-----PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPA 2773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 536 EPAPTTTKSAPTTPKEP-SPTTTKEPAPTTPKEPAPTTPkKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK 614
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASlSESRESLPSPWDPADPPAAVL-APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 615 ETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPttpkaaaPNTPKEPAPTTPKEPAPTTPK 694
Cdd:PHA03247 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ-------PERPPQPQAPPPPQPQPQPPP 2925
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 695 EPAPTTPKETAPTTPKGTAPTTLKEPAP-TTPKKPAPKELAPTT-TKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTT 769
Cdd:PHA03247 2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGePSGAVPQPWLGALVPgRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002
|
|
| SO |
smart00201 |
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ... |
26-68 |
8.88e-19 |
|
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.
Pssm-ID: 197571 Cd Length: 43 Bit Score: 80.88 E-value: 8.88e-19
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1370451476 26 DLSSCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTAEL 68
Cdd:smart00201 1 AIGSCKGRCGESFNEGNACRCDALCLSYGDCCTDYESVCKKEV 43
|
|
| Somatomedin_B |
pfam01033 |
Somatomedin B domain; |
69-106 |
3.88e-18 |
|
Somatomedin B domain;
Pssm-ID: 460034 Cd Length: 40 Bit Score: 78.88 E-value: 3.88e-18
10 20 30
....*....|....*....|....*....|....*...
gi 1370451476 69 SCKGRCFESFERGRECDCDAQCKKYDKCCPDYESFCAE 106
Cdd:pfam01033 2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLG 39
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
404-915 |
3.95e-18 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 91.15 E-value: 3.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 404 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKepAPTTPKKPAPT-----TPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTT 478
Cdd:PHA03247 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPD--APPAPSRLAPAilpdePVGEPVHPRMLTWIRGLEELASDDAGDPPPPL 2555
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 479 PKEPAPTAPKKPAPttPKEPAPTtPKEPApTTTKEPSPTTPKEPAPtttksaptttkepaptttksaPTTPKEPsptttk 558
Cdd:PHA03247 2556 PPAAPPAAPDRSVP--PPRPAPR-PSEPA-VTSRARRPDAPPQSAR---------------------PRAPVDD------ 2604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 559 epaPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Cdd:PHA03247 2605 ---RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPttpeelapttpeeptpttpeepapttpkaaaPNTPKEPAPTTPKEPAPTTPKEPAPTtPKETAPTTPKGTAPTTLK 718
Cdd:PHA03247 2682 RPRR-------------------------------RAARPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAAR 2729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 719 EPAPTTPKKPAPKELAPTTTKeptsttsdkPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 798
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPAT---------PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 799 PKELAPTT----TKGPTSTTSDKPAPTTPKET-----APTTPKEPAPTT------------------PKKPAPTTPETPP 851
Cdd:PHA03247 2801 PWDPADPPaavlAPAAALPPAASPAGPLPPPTsaqptAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPAR 2880
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 852 PTTSEVSTPTTTKEPTTIHKSPDE----STPELSAEPTPKALENSPKEPgVPTTKTPAATKPEMTTTA 915
Cdd:PHA03247 2881 PPVRRLARPAVSRSTESFALPPDQperpPQPQAPPPPQPQPQPPPPPQP-QPPPPPPPRPQPPLAPTT 2947
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
383-710 |
2.04e-17 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 88.84 E-value: 2.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 383 PTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPT---TPKEPAPTTPKEP 459
Cdd:PHA03247 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPaapAPPAVPAGPATPG 2752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 460 TPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 539
Cdd:PHA03247 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 540 TTTKSAPTTPKEPSPTTTKEPAPTTPKEP----APTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKE 615
Cdd:PHA03247 2833 SAQPTAPPPPPGPPPPSLPLGGSVAPGGDvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 616 TAPTTPKKLTPTTPEKLAPTTPEKPAPTTPeeLAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPkEPAPTTPKe 695
Cdd:PHA03247 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPP--LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP-QPAPSREA- 2988
|
330
....*....|....*
gi 1370451476 696 PAPTTPKETAPTTPK 710
Cdd:PHA03247 2989 PASSTPPLTGHSLSR 3003
|
|
| Somatomedin_B |
pfam01033 |
Somatomedin B domain; |
29-67 |
1.93e-16 |
|
Somatomedin B domain;
Pssm-ID: 460034 Cd Length: 40 Bit Score: 74.26 E-value: 1.93e-16
10 20 30
....*....|....*....|....*....|....*....
gi 1370451476 29 SCAGRCGEGYSRDATCNCDYNCQHYMECCPDFKRVCTAE 67
Cdd:pfam01033 2 SCKGRCGESFDRGRLCQCDDDCVKYGDCCPDYESLCLGE 40
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
388-589 |
7.89e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 66.82 E-value: 7.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 388 SAPTTPKE-PAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPttpkepaptTPKEPTPTTPKE 466
Cdd:PRK12323 372 AGPATAAAaPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP---------EALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 467 PAPTTKEPAPTTPKEPAPTAPKKPAPTTPK---EPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTK 543
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVaaaAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1370451476 544 SAPTtpkePSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEP--APTTP 589
Cdd:PRK12323 523 AESI----PDPATADPDDAFETLAPAPAAAPAPRAAAATEPvvAPRPP 566
|
|
| HX |
smart00120 |
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ... |
1195-1239 |
9.63e-11 |
|
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Pssm-ID: 214524 [Multi-domain] Cd Length: 45 Bit Score: 58.02 E-value: 9.63e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1370451476 1195 IDTVFTRCNceGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGL 1239
Cdd:smart00120 1 IDAAFELRD--GKTYFFKGDKYWRFDPKRVDPGYPKLISSFFPGL 43
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
480-1080 |
6.06e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.11 E-value: 6.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 480 KEPAPTAPKKPAPTTPKEPAPTTPKePAPTTTKEPSPTTPKEPAPTTTKS-APTTTKEPAPTTTKSAPTTPKEPSPTTTK 558
Cdd:PHA03247 2471 GELFPGAPVYRRPAEARFPFAAGAA-PDPGGGGPPDPDAPPAPSRLAPAIlPDEPVGEPVHPRMLTWIRGLEELASDDAG 2549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 559 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPkepaptttkkpaPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Cdd:PHA03247 2550 DPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP------------AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPL 2617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPTTPEelapttpeeptpttpeepAPTTPKAAAPNTPKEPAPTtPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTtlk 718
Cdd:PHA03247 2618 PPDTHAPD------------------PPPPSPSPAANEPDPHPPP-TVPPPERPRDDPAPGRVSRPRRARRLGRAAQ--- 2675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 719 epAPTTPKKPAPKELaptttkeptsttSDKPAPTTPKGTAPTTPKEPAPTtPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 798
Cdd:PHA03247 2676 --ASSPPQRPRRRAA------------RPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALPAAPA 2740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 799 PKELAPTTTKgptsttsdkPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPPPTTSEVStptttkepttihkSPDESTP 878
Cdd:PHA03247 2741 PPAVPAGPAT---------PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL-------------SESRESL 2798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 879 ELSAEPTPKALENSPKEPGVPTTKTPAATKPEMTTTAkdktterdlrttpetttaapkmtketatttekTTESKITATTT 958
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ--------------------------------PTAPPPPPGPP 2846
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 959 QVTSTTTQDTTPFKITTLKTTTLAPKVTTTKKTITTTEIMNKPeetakPKDRATNSKATTPKPQKPTKAPKKPTSTKKPK 1038
Cdd:PHA03247 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP-----AVSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1370451476 1039 TMPRvrKPKTTPTPRKMTSTMPELNPTSRIAEAMLQTTTRPN 1080
Cdd:PHA03247 2922 QPPP--PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
380-591 |
7.48e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.38 E-value: 7.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 380 EPAPTTTKSAPTTPKEPAPtttKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEP 459
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPAS---SGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 460 TPTtpkepapttkEPAPTTPKEPAPTAPKkPAPTTPKEPAPTTPKEPAPTTTkePSPTTPKEPAPTTTKSAPTTTKEPAP 539
Cdd:PRK07764 664 DGG----------DGWPAKAGGAAPAAPP-PAPAPAAPAAPAGAAPAQPAPA--PAATPPAGQADDPAAQPPQAAQGASA 730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 540 TTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKE 591
Cdd:PRK07764 731 PSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| Hemopexin |
pfam00045 |
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. ... |
1195-1237 |
1.07e-08 |
|
Hemopexin; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metallopeptidases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs).
Pssm-ID: 395000 [Multi-domain] Cd Length: 44 Bit Score: 52.18 E-value: 1.07e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1370451476 1195 IDTVFTRCNceGKTFFFKDSQYWRFTNDIKDAGYPKPI--FKGFG 1237
Cdd:pfam00045 1 IDAAFEDRD--GKTYFFKGRKYWRFDPQRVEPGYPKLIsdFPGLP 43
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
384-569 |
4.88e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 57.74 E-value: 4.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 384 TTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPtTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTT 463
Cdd:PRK10811 848 VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAP-VVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTE 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 464 PKEPAPTTKEP-APTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTT 542
Cdd:PRK10811 927 QPQVITESDVAvAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
|
170 180
....*....|....*....|....*..
gi 1370451476 543 KSAPTTPKEPSPTTTKEPAPTTPKEPA 569
Cdd:PRK10811 1007 PEATVEHNHATAPMTRAPAPEYVPEAP 1033
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
301-583 |
5.19e-08 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 57.78 E-value: 5.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 301 KEKTTSAKETQSIEKTSAKDlAPTSKVLAKPTPKAE-TTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPK 379
Cdd:PTZ00449 532 GEHEDSKESDEPKEGGKPGE-TKEGEVGKKPGPAKEhKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPK 610
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 380 EPAPTTTKSAPTTPKEP-APTTTKEP-APTTPKEPA-PTTTKEPaptTTKSAPTTPKEP-APTTPKKPAPTTPKEPAPTT 455
Cdd:PTZ00449 611 SPKLPELLDIPKSPKRPeSPKSPKRPpPPQRPSSPErPEGPKII---KSPKPPKSPKPPfDPKFKEKFYDDYLDAAAKSK 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 456 PKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA--PTTPKEPApTTPKEPAPTTTKEPSPTTPkePAPTTTKSAPTT 533
Cdd:PTZ00449 688 ETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPklPRDEEFPF-EPIGDPDAEQPDDIEFFTP--PEEERTFFHETP 764
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 534 TKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPA--PTTPKE 583
Cdd:PTZ00449 765 ADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGdhPSLPKK 816
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
484-709 |
5.94e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 57.19 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 484 PTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEpSPTTTKEPAPT 563
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR-GPGGAPAPAPA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 564 TPKEPAPTTPkkPAPTTPKEPAPTTPkepaptttkkpapttpkePAPTTPKETAPTTPKKLTPTTPEKLAPTTPEkPAPT 643
Cdd:PRK12323 454 PAAAPAAAAR--PAAAGPRPVAAAAA------------------AAPARAAPAAAPAPADDDPPPWEELPPEFAS-PAPA 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370451476 644 TPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTtpkePAPTTPKETAPTTP 709
Cdd:PRK12323 513 QPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPV----VAPRPPRASASGLP 574
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
373-450 |
8.35e-08 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 57.21 E-value: 8.35e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKE 450
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
395-573 |
9.08e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.78 E-value: 9.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 395 EPAPTTTKEPAPTTPKE-----PAPTTTKEPAPTTTKSAPTTPKEPAPT---TPKKPAPTTPKEPAPTTPKEPTPTTPKE 466
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARvagavPAPGARAAAAVGASAVPAVTAVTGAAGaalAPKAAAAAAATRAEAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 467 PAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEpsPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAP 546
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP--PDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
|
170 180
....*....|....*....|....*...
gi 1370451476 547 TTPKEPSPttTKEPAP-TTPKEPAPTTP 573
Cdd:PRK07003 517 SREDAPAA--AAPPAPeARPPTPAAAAP 542
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
432-589 |
1.00e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 56.41 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 432 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTT 511
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 512 KEPSPTTPKEPAPTTTKSAPTTtkEPAPTTTKSAPTtPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASV--RPAPSALEKAPA-KKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
474-839 |
1.08e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.53 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPK-EP 552
Cdd:PRK07764 403 AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAApAP 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 553 SPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPK--------ETAPTTPKKL 624
Cdd:PRK07764 483 APPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRgdtlvlgfSTGGLARRFA 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 625 TPTTPEKL------------------APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPK 686
Cdd:PRK07764 563 SPGNAEVLvtalaeelggdwqveavvGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAA 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 687 EPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPttpkEPA 766
Cdd:PRK07764 643 PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD----DPA 718
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 767 PTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTP 839
Cdd:PRK07764 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
381-587 |
1.21e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 56.63 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 381 PAPTTTKSAPTTPKEPA---PTTTKEPAPTtPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepAPTTPK 457
Cdd:PRK10263 336 PVEPVTQTPPVASVDVPpaqPTVAWQPVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQ---PYYAPA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 458 EPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKE-PSPTTPKEPAPTTTKSAPTTTKE 536
Cdd:PRK10263 412 AEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTyQQPAAQEPLYQQPQPVEQQPVVE 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 537 PAPTTTKSAPTTPK----------------------EPSPTTTKEPAPTTPKEPAPTTPKKPapttPKEPAPT 587
Cdd:PRK10263 492 PEPVVEETKPARPPlyyfeeveekrarereqlaawyQPIPEPVKEPEPIKSSLKAPSVAAVP----PVEAAAA 560
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
671-882 |
1.23e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.42 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPA--PTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDK 748
Cdd:PRK12323 378 AAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAA 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 749 PAPTTPKGTAPttPKEPAPTTPKEPAPTTPkgtAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAP 828
Cdd:PRK12323 458 PAAAARPAAAG--PRPVAAAAAAAPARAAP---AAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 829 TTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSA 882
Cdd:PRK12323 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAA 586
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
373-705 |
1.92e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.76 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTtkEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS--PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 PTTPKEPTPTTPKEPAPttKEPAPTTPKEPAPTAP-----------------------KKPAPT---------------- 493
Cdd:PRK07764 478 AAPAPAPPAAPAPAAAP--AAPAAPAAPAGADDAAtlrerwpeilaavpkrsrktwaiLLPEATvlgvrgdtlvlgfstg 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 494 -----------------------------------TPKEPAPTTPKEPAPTT--TKEPSPTTPKEPAPTTTKSAPTTTKE 536
Cdd:PRK07764 556 glarrfaspgnaevlvtalaeelggdwqveavvgpAPGAAGGEGPPAPASSGppEEAARPAAPAAPAAPAAPAPAGAAAA 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 537 PAPTTTKSAPTTPkePSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKET 616
Cdd:PRK07764 636 PAEASAAPAPGVA--APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 617 APTTPKKLTPTTPEKLAPTTPEKPAPTTPEElAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEP 696
Cdd:PRK07764 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPE-PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
|
....*....
gi 1370451476 697 APTTPKETA 705
Cdd:PRK07764 793 MDDEDRRDA 801
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
373-782 |
2.41e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 55.56 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPttpkePAPTTPKKPAPTTPkepa 452
Cdd:PHA03307 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP-----PPTPPPASPPPSPA---- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 ptTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTApkkPAPTTPKEPAPTTPKEPAPtttkEPSPTTPKEPAptttksapt 532
Cdd:PHA03307 132 --PDLSEMLRPVGSPGPPPAASPPAAGASPAAVA---SDAASSRQAALPLSSPEET----ARAPSSPPAEP--------- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 533 tTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTtpkePAPTT 612
Cdd:PHA03307 194 -PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPI----TLPTR 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 613 PKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAA---APNTPKEPAPTTPKEPA 689
Cdd:PHA03307 269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSStssSSESSRGAAVSPGPSPS 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 690 PTtpkePAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKepAPTT 769
Cdd:PHA03307 349 RS----PSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLD--AGAA 422
|
410
....*....|...
gi 1370451476 770 PKEPAPTTPKGTA 782
Cdd:PHA03307 423 SGAFYARYPLLTP 435
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
475-583 |
2.60e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 55.20 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 475 APTTPKEPAPTAPKKPAPTTPKePAPTTPKEPAPTTTKEPSPTTPkepaptttksaptttkEPAPTTTKSAPttPKEPSP 554
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVR----------------ETATPPPVPPR--PVAPPV 421
|
90 100 110
....*....|....*....|....*....|.
gi 1370451476 555 TTTKEPAPTTPKE--PAPTTPKKPAPTTPKE 583
Cdd:PRK14950 422 PHTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
381-508 |
2.68e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.11 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 381 PAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPT 460
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1370451476 461 PTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPkEPAP 508
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL-TPTE 492
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
397-775 |
3.50e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 3.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 397 APTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAP 476
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 477 TTPKEPAPTAPKKPAPTTPKEPAPTtPKEPAPTTTKEPSPTTP------------------KEPAPTTTKSAPTTTKEPA 538
Cdd:PRK07764 469 APAAAPEPTAAPAPAPPAAPAPAAA-PAAPAAPAAPAGADDAAtlrerwpeilaavpkrsrKTWAILLPEATVLGVRGDT 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 539 PTTTKSAP----------------------------------TTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPkeP 584
Cdd:PRK07764 548 LVLGFSTGglarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP--A 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 585 APTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEElapttpeeptpttpeep 664
Cdd:PRK07764 626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA----------------- 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 665 aptTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTkeptst 744
Cdd:PRK07764 689 ---APAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP------ 759
|
410 420 430
....*....|....*....|....*....|.
gi 1370451476 745 tsdkPAPTTPKGTAPTTPKEPAPTTPKEPAP 775
Cdd:PRK07764 760 ----PPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
473-883 |
3.59e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 473 EPAPTTPKEPAPTAPKKPAPTtPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPtttKSAPTTPKEP 552
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPA-PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP---PPAAAPSAQP 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 553 SPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEK- 631
Cdd:PRK07764 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGd 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 632 ---LAPTTPEKP----APTTPEELAPTTPEEPTPT-TPEEPAPTTPKAAAPNTPKEPAPTTP----KEPAPTTPKEPAPT 699
Cdd:PRK07764 547 tlvLGFSTGGLArrfaSPGNAEVLVTALAEELGGDwQVEAVVGPAPGAAGGEGPPAPASSGPpeeaARPAAPAAPAAPAA 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 700 TPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGT-APTTPKEPAPTTPKEPAPTTP 778
Cdd:PRK07764 627 PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPApAPAAPAAPAGAAPAQPAPAPA 706
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 779 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPPPTTSEVS 858
Cdd:PRK07764 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
410 420
....*....|....*....|....*
gi 1370451476 859 TPTTTKEPTTIHKSPDESTPELSAE 883
Cdd:PRK07764 787 EDDAPSMDDEDRRDAEEVAMELLEE 811
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
474-577 |
4.49e-07 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 54.90 E-value: 4.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPkepaptttksaptttkePAPTTTKSAPTTPKEPS 553
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP-----------------PKPAAAAAAAAAPAAPP 100
|
90 100
....*....|....*....|....
gi 1370451476 554 PTTTKEPAPTTPKEPAPTTPKKPA 577
Cdd:PRK12270 101 AAAAAAAPAAAAVEDEVTPLRGAA 124
|
|
| Streccoc_I_II |
NF033804 |
antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins ... |
749-906 |
5.21e-07 |
|
antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins with a glucan-binding domain, two types of repetitive regions, an isopeptide bond-forming domain associated with shear resistance, and a C-terminal LPXTG motif for anchoring to the cell wall. They occur in oral Streptococci, and tend to be major cell surface adhesins. Members of this family include SspA and SspB from Streptococcus gordonii, antigen I/II from S. mutans, etc.
Pssm-ID: 468188 [Multi-domain] Cd Length: 1552 Bit Score: 54.56 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 749 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAP--TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKET 826
Cdd:NF033804 825 PKITKEKPTPPVAPTAPQAPTYEVEKPLEPAPVAPTYENEPTPpvKTPDQPEPSKPEEPTYETEKPLEPAPVAPTYENEP 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 827 AP--TTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPttiHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTP 904
Cdd:NF033804 905 TPpvKTPDQPEPSKPEEPTYETEKPLEPAPVAPSYENEPTPP---VKTPDQPEPSKPVEPTYDPLPTPPVAPTPKQLPTP 981
|
..
gi 1370451476 905 AA 906
Cdd:NF033804 982 PA 983
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
359-573 |
5.21e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.11 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 359 ASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTkEPAPTTTKSAPTTPKEPAPT 438
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL-AAARQASARGPGGAPAPAPA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 439 TPKKPAPTTPkepaPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPtTPKEPAPTTTKEPSPTT 518
Cdd:PRK12323 454 PAAAPAAAAR----PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP-AQPDAAPAGWVAESIPD 528
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 519 PKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKepsptttkePAPTTPKEPAPTTP 573
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAAPAPRAAAATEPV---------VAPRPPRASASGLP 574
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
373-450 |
5.27e-07 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 54.51 E-value: 5.27e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPtttksAPTTPKEPAPTTPKKPAPTTPKE 450
Cdd:PRK12270 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA-----APAAPPAAAAAAAPAAAAVEDEV 117
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
375-508 |
7.21e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.56 E-value: 7.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 375 PTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTttkEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPT 454
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA---PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 455 TPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPkKPAPTTPKEPAPTTPKEPAP 508
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGD 495
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
748-840 |
7.33e-07 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 54.13 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 748 KPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKelaptttkgptstTSDKPAPTTPKETA 827
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA-------------AAAAAAPAAPPAAA 103
|
90
....*....|...
gi 1370451476 828 PTTPKEPAPTTPK 840
Cdd:PRK12270 104 AAAAPAAAAVEDE 116
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
414-523 |
7.71e-07 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 54.13 E-value: 7.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 414 PTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKepapttpkeptpttpkepapttkEPAPTTPKEPAPTAPKKPAPT 493
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-----------------------PPAAAAPAAPPKPAAAAAAAA 94
|
90 100 110
....*....|....*....|....*....|
gi 1370451476 494 TPKEPAPTTPKEPAPTTTKEPSPTTPKEPA 523
Cdd:PRK12270 95 APAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
321-730 |
8.70e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 54.02 E-value: 8.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 321 LAPTSKVLAKPTPKAettTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPtt 400
Cdd:PHA03307 43 LVSDSAELAAVTVVA---GAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP-- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 401 tkePAPTTPKEPAPTttkePAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPK 480
Cdd:PHA03307 118 ---PPTPPPASPPPS----PAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 481 EPAP--TAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTK 558
Cdd:PHA03307 191 AEPPpsTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 559 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEpaptttkkpapttPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPE 638
Cdd:PHA03307 271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSP-------------GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLK 718
Cdd:PHA03307 338 GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPL 417
|
410
....*....|..
gi 1370451476 719 EPAPTTPKKPAP 730
Cdd:PHA03307 418 DAGAASGAFYAR 429
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
374-752 |
9.76e-07 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 53.62 E-value: 9.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 374 APTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPT--TPKEPAPTTPKKPA--PTTPK 449
Cdd:pfam03154 180 AASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTlhPQRLPSPHPPLQPMtqPPPPS 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 450 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKS 529
Cdd:pfam03154 260 QVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQP 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 530 APTTTKEPAPTTTKSAPTTPKEPSPTTtkePAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTttkkpapttpkepa 609
Cdd:pfam03154 340 PREQPLPPAPLSMPHIKPPPTTPIPQL---PNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSL-------------- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 610 pTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPA 689
Cdd:pfam03154 403 -STHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPSGP 481
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 690 PTTPKEPAPTT-PKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPT 752
Cdd:pfam03154 482 PTSTSSAMPGIqPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPT 545
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
478-772 |
9.90e-07 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 53.54 E-value: 9.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 478 TPKEPAPTAPKKPAPTTpKEPAPTTPKEPA--PTTTKEPSptTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPT 555
Cdd:PTZ00449 542 EPKEGGKPGETKEGEVG-KKPGPAKEHKPSkiPTLSKKPE--FPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELL 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 556 TTkepaPTTPKEP-APTTPKKPAPTTpkepAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKetapttpkkltptTPEKLAP 634
Cdd:PTZ00449 619 DI----PKSPKRPeSPKSPKRPPPPQ----RPSSPERPEGPKIIKSPKPPKSPKPPFDPK-------------FKEKFYD 677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 635 TTPEKPAPTtpEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP--TTPKEPAPTTPKETAPTTPKGT 712
Cdd:PTZ00449 678 DYLDAAAKS--KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFpfEPIGDPDAEQPDDIEFFTPPEE 755
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 713 APTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPA--PTTPKGTAPTTPKEpAPTTPKE 772
Cdd:PTZ00449 756 ERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMkrPDSPSEHEDKPPGD-HPSLPKK 816
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
378-556 |
1.50e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.56 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 378 PKEPAPtttksAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPttpkepaptTPK 457
Cdd:PRK07994 361 PAAPLP-----EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLL---------AAR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 458 EPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPkePAPTTPKEPAPtttKEPSPTTPKEPAptttksAPTTTKEP 537
Cdd:PRK07994 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRP--APSALEKAPAK---KEAYRWKATNPV------EVKKEPVA 495
|
170
....*....|....*....
gi 1370451476 538 APTTTKSAPTTPKEPSPTT 556
Cdd:PRK07994 496 TPKALKKALEHEKTPELAA 514
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
670-732 |
1.54e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.97 E-value: 1.54e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 670 KAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKE 732
Cdd:PRK12270 52 AAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVE 114
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
411-589 |
1.55e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.93 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 411 EPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKP 490
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 491 APTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTP----K 566
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPaaasR 518
|
170 180
....*....|....*....|....
gi 1370451476 567 EPAPTTPKKPAP-TTPKEPAPTTP 589
Cdd:PRK07003 519 EDAPAAAAPPAPeARPPTPAAAAP 542
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
499-591 |
1.94e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 52.50 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 499 APTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTttkEPAPTTPKEPAPTTPKK--P 576
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV---APPVPHTPESAPKLTRAaiP 437
|
90
....*....|....*
gi 1370451476 577 APTTPKEPAPTTPKE 591
Cdd:PRK14950 438 VDEKPKYTPPAPPKE 452
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
474-648 |
2.09e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 52.19 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPkePAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPS 553
Cdd:PRK12323 385 PAPAAAAPAAAAPAPAAPPAAP--AAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 554 PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLA 633
Cdd:PRK12323 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLA 542
|
170
....*....|....*
gi 1370451476 634 PTTPEKPAPTTPEEL 648
Cdd:PRK12323 543 PAPAAAPAPRAAAAT 557
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
696-787 |
2.22e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.59 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 696 PAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAP 775
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
|
90
....*....|..
gi 1370451476 776 TTPKGTAPTTLK 787
Cdd:PRK12270 118 TPLRGAAAAVAK 129
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
373-589 |
2.43e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 52.16 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTttkSAPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:PRK07003 407 GAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARA---SADSRCDERDAQPPADSGSASAPASD 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPApTAPKKPAPTTPKEPAPTTPkEPAPTTTKEPSPTTPKEPA----PTTTK 528
Cdd:PRK07003 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPA-AASREDAPAAAAPPAPEAR-PPTPAAAAPAARAGGAAAAldvlRNAGM 561
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 529 SAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPT-TPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:PRK07003 562 RVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVpTPRARAATGDAPPNGAARAEQAAESR 623
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
374-450 |
2.44e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 52.12 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 374 APTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAP-----TTPKEPAPTTTKEPAPTTTKSAPTTPKE--PAPTTPKKPAPT 446
Cdd:PRK14950 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEpvretATPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDEKPKYTPPA 448
|
....
gi 1370451476 447 TPKE 450
Cdd:PRK14950 449 PPKE 452
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
513-591 |
2.45e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.20 E-value: 2.45e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370451476 513 EPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKE 591
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
474-589 |
2.68e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 52.02 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAP-KKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEP 552
Cdd:PRK14951 376 AEKKTPARPEAAAPaAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
|
90 100 110
....*....|....*....|....*....|....*..
gi 1370451476 553 SPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:PRK14951 456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
671-788 |
2.82e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 51.64 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTtpkgTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPA 750
Cdd:PRK14951 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP----AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1370451476 751 PTTPKGTAP--TTPKEPAPTTPKEPAPTTPKGTAPTTLKE 788
Cdd:PRK14951 454 QAAPETVAIpvRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
688-790 |
3.03e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.20 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 688 PAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKelaptttkeptstTSDKPAPTTPKGTAPTTPKEPAP 767
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA-------------APPKPAAAAAAAAAPAAPPAAAA 104
|
90 100
....*....|....*....|...
gi 1370451476 768 TTPKEPAPTTPKgtaPTTLKEPA 790
Cdd:PRK12270 105 AAAPAAAAVEDE---VTPLRGAA 124
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
413-509 |
3.53e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 51.81 E-value: 3.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 413 APTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPApttpkeptpttpkepapttkePAPTTPKEPAPTAPKKPAP 492
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---------------------AAPAAPPKPAAAAAAAAAP 96
|
90
....*....|....*..
gi 1370451476 493 TTPKEPAPTTPKEPAPT 509
Cdd:PRK12270 97 AAPPAAAAAAAPAAAAV 113
|
|
| Not5 |
COG5665 |
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]; |
379-587 |
4.31e-06 |
|
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
Pssm-ID: 444384 [Multi-domain] Cd Length: 874 Bit Score: 51.59 E-value: 4.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 379 KEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTttkEPAPTTTKSAPTTPKEPAPTTPKKPAPttpkepapttPKE 458
Cdd:COG5665 276 TNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSDTASG---NPSAPSVLINSDSPTSEDPATASVPTT----------EET 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 459 PTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 538
Cdd:COG5665 343 TAFTTPSSVPSTPAEKDTPATDLATPVSPTPPETSVDKKVSPDSATSSTKSEKEGGTASSPMPPNIAIGAKDDVDATDPS 422
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1370451476 539 PTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPT 587
Cdd:COG5665 423 QEAKEYTKNAPMTPEADSAPESSVRTEASPSAGSDLEPENTTLRDPAPN 471
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
373-497 |
4.48e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 50.96 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKePAPTTtkepAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepa 452
Cdd:PRK14950 345 SYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPT-PAPST----RPKAAAAANIPPKEPVRETATPPPVPPR---- 415
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1370451476 453 pttpkeptptTPKEPAPTTKEPAPTTPKE--PAPTAPKKPAPTTPKE 497
Cdd:PRK14950 416 ----------PVAPPVPHTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
586-785 |
4.77e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.03 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 586 PTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPA 665
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 666 PTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPtTPKKPAPKELAPTTTKEPTSTT 745
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAP-AQPDAAPAGWVAESIPDPATAD 533
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1370451476 746 SDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTT 785
Cdd:PRK12323 534 PDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
373-516 |
4.94e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.02 E-value: 4.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTP--KEPAPTTPKKPAPTTPKE 450
Cdd:PRK07994 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAKKSEPAAASR 448
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370451476 451 PAPTTPKEPTPTTPKEPAPTTkePAPTTPKEPAPTAPKKPAPTtpKEPAPTTPKEPAPTTTKEPSP 516
Cdd:PRK07994 449 ARPVNSALERLASVRPAPSAL--EKAPAKKEAYRWKATNPVEV--KKEPVATPKALKKALEHEKTP 510
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
373-720 |
5.35e-06 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 50.73 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPaptttkepaPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:pfam17823 98 SEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAAL---------PSEAFSAPRAAACRANASAAPRAAIAAASAP 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPT 532
Cdd:pfam17823 169 HAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTV 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 533 TTKEPApTTTKSAPTTPKEPSPTTTKEPAPTTPkEPAPTTPKKpapTTPKEPAPTTPKEPAPTTTKKPAPTTPKEpapTT 612
Cdd:pfam17823 249 TPAALA-TLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSD---TMARNPAAPMGAQAQGPIIQVSTDQPVHN---TA 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 613 PKETAPTTPKKLTPTTPEKLAPTTpekPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTT 692
Cdd:pfam17823 321 GEPTPSPSNTTLEPNTPKSVASTN---LAVVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGI 397
|
330 340
....*....|....*....|....*...
gi 1370451476 693 PKEPAPTTPKETAPTTPKGTAPTTLKEP 720
Cdd:pfam17823 398 LLAPEQVATEATAGTASAGPTPRSSGDP 425
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
398-512 |
6.71e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 51.04 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 398 PTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKepapttpkeptpttpkepapttkEPAPT 477
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA-----------------------AAAAA 94
|
90 100 110
....*....|....*....|....*....|....*
gi 1370451476 478 TPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTK 512
Cdd:PRK12270 95 APAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
537-616 |
9.02e-06 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 50.66 E-value: 9.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 537 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKET 616
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
384-450 |
9.15e-06 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 49.51 E-value: 9.15e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 384 TTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTT-PKKPAPTTPKE 450
Cdd:TIGR00601 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATaPESPSTSVPSS 142
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
475-638 |
1.07e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 475 APTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTttkEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPsp 554
Cdd:PRK07994 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP---PPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS-- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 555 tttkEPAPTTPKEPAPTTPKKPAPTTP-KEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLA 633
Cdd:PRK07994 442 ----EPAAASRARPVNSALERLASVRPaPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLA 517
|
....*
gi 1370451476 634 PTTPE 638
Cdd:PRK07994 518 AEAIE 522
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
673-779 |
1.18e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.81 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 673 APNTPKEPAPTTPKEPAPTTPKePAPTTPKETAPTTPkgtAPTTLKEPAPTTPKKPAPKELAptttkeptsttsdkPAPT 752
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAAN---IPPKEPVRETATPPPVPPRPVA--------------PPVP 422
|
90 100
....*....|....*....|....*....
gi 1370451476 753 TPKGTAPTTPKE--PAPTTPKEPAPTTPK 779
Cdd:PRK14950 423 HTPESAPKLTRAaiPVDEKPKYTPPAPPK 451
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
405-521 |
1.28e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.81 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 405 APTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepapttkEPAPTTPKEPAP 484
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVR------------------------ETATPPPVPPRP 416
|
90 100 110
....*....|....*....|....*....|....*....
gi 1370451476 485 TAPKKPaptTPKEPAPTTPKE--PAPTTTKEPSPTTPKE 521
Cdd:PRK14950 417 VAPPVP---HTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
671-732 |
1.67e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 49.50 E-value: 1.67e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKE 732
Cdd:PRK12270 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
317-510 |
1.80e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.10 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 317 SAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKeP 396
Cdd:PRK12323 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPA-A 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 397 APTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPT-TPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPA 475
Cdd:PRK12323 457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536
|
170 180 190
....*....|....*....|....*....|....*..
gi 1370451476 476 PTTPKEPAPTAPKKPAPTTPKEP--APTTPKEPAPTT 510
Cdd:PRK12323 537 AFETLAPAPAAAPAPRAAAATEPvvAPRPPRASASGL 573
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
681-788 |
1.82e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.04 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 681 APTTPKEPAPTTPKEPAPTTPKeTAPTTPKGTAPTTLKEPAPTTPKkPAPKElaptttkeptsttsdkPAPTTPKGTAPT 760
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRE-TATPP----------------PVPPRPVAPPVP 422
|
90 100 110
....*....|....*....|....*....|
gi 1370451476 761 TPKEPAPTTPKE--PAPTTPKGTAPTTLKE 788
Cdd:PRK14950 423 HTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
515-591 |
1.95e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 49.50 E-value: 1.95e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 515 SPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPtttkePAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKE 591
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-----AAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
671-800 |
2.39e-05 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 48.22 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPA 750
Cdd:NF040712 200 ATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGE 279
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 751 PTTPKGTAPTTPKEPAPTTPKEPA-PTTPKGTAPTTLKEPAPTTPKKPAPK 800
Cdd:NF040712 280 PPAPGAAETPEAAEPPAPAPAAPAaPAAPEAEEPARPEPPPAPKPKRRRRR 330
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
705-801 |
2.42e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 49.12 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 705 APTTPKGTAPTTLKEPAPTTPKKPapkelaptttkeptsttsdkPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPT 784
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAA--------------------PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97
|
90
....*....|....*..
gi 1370451476 785 TLKEPAPTTPKKPAPKE 801
Cdd:PRK12270 98 APPAAAAAAAPAAAAVE 114
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
311-522 |
2.53e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.83 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 311 QSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTtikSAPTTPKEPAPTTTKSAP 390
Cdd:PRK07764 572 TALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA---GAAAAPAEASAAPAPGVA 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 391 TTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPT 470
Cdd:PRK07764 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 471 TKEPAPTTPKEPAPTAPKKP--APTTPKEPAPTTPKEPAPTTTKEPSPTTPKEP 522
Cdd:PRK07764 729 SAPSPAADDPVPLPPEPDDPpdPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
372-444 |
3.10e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 3.10e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 372 KSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPA 444
Cdd:PRK12270 52 AAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
748-843 |
3.52e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 748 KPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKelaptttkgptsttsdKPAPTTPKETA 827
Cdd:PRK12270 45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA----------------APPAAAAAAAP 108
|
90
....*....|....*.
gi 1370451476 828 PTTPKEPAPTTPKKPA 843
Cdd:PRK12270 109 AAAAVEDEVTPLRGAA 124
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
544-774 |
3.74e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 48.50 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 544 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTpkEPAPTTTKKPAPTTPKEPAPTTPKETApttpkk 623
Cdd:PRK10811 844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVETT------ 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 624 ltptTPEKLAPTTPEKPAPTTPEElapttpeeptpttpeepapttpKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKE 703
Cdd:PRK10811 916 ----HPEVIAAPVTEQPQVITESD----------------------VAVAQEVAEHAEPVVEPQDETADIEEAAETAEVV 969
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 704 TAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPApttpkgTAPTTpKEPAPTTPKEPA 774
Cdd:PRK10811 970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHA------TAPMT-RAPAPEYVPEAP 1033
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
473-646 |
3.87e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 48.50 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAPTTpkEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEP 552
Cdd:PRK10811 859 REAEEVQVQPVVAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV 936
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 553 S--PTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPaPTTPKETAPTTPKKLTPTTPE 630
Cdd:PRK10811 937 AvaQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV-TAVEPEVAPAQVPEATVEHNH 1015
|
170
....*....|....*..
gi 1370451476 631 KLAPTTpEKPAPT-TPE 646
Cdd:PRK10811 1016 ATAPMT-RAPAPEyVPE 1031
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
255-562 |
4.88e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 255 AKPINPRPSLPPNSDTSKETSLTVNKETTVETKETTTTNKQTSTDGKEKTTSAKETQSIEKTSAKDLAPTSKVLAKPTPK 334
Cdd:PHA03247 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 335 AETTTKGPALTTPKEPTPTTPKEPASttpkeptpttiksaPTTPKEPAPTTTKSAPTTPKepAPTTTKEPAPTTPKEPAp 414
Cdd:PHA03247 2814 PAAALPPAASPAGPLPPPTSAQPTAP--------------PPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSPAAKPA- 2876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 415 TTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepapttkePAPTTPKEPAPTAPKKPAPTT 494
Cdd:PHA03247 2877 APARPPVRRLARPAVSRSTESFALPPDQPERPPQ-------------------------PQAPPPPQPQPQPPPPPQPQP 2931
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 495 PKEPAPTTPKEPAPTTTKEPSP-TTPKEPAPTTTKSAPTTTKEPAPTTTKSAPT--TPKEPSPTTTKEPAP 562
Cdd:PHA03247 2932 PPPPPPRPQPPLAPTTDPAGAGePSGAVPQPWLGALVPGRVAVPRFRVPQPAPSreAPASSTPPLTGHSLS 3002
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
473-645 |
5.16e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.95 E-value: 5.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSpttPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEP 552
Cdd:PRK12323 393 AAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA---ARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 553 SPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPaptTPKETAPTTPKKLTPTTPEKL 632
Cdd:PRK12323 470 RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES---IPDPATADPDDAFETLAPAPA 546
|
170
....*....|...
gi 1370451476 633 APTTPEKPAPTTP 645
Cdd:PRK12323 547 AAPAPRAAAATEP 559
|
|
| HX |
smart00120 |
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. ... |
1151-1193 |
5.97e-05 |
|
Hemopexin-like repeats; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Pssm-ID: 214524 [Multi-domain] Cd Length: 45 Bit Score: 41.84 E-value: 5.97e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1370451476 1151 VDGLTTLRNGTLVAFRGHYFWMLSPFSP-PSPARRITEVW-GIPS 1193
Cdd:smart00120 1 IDAAFELRDGKTYFFKGDKYWRFDPKRVdPGYPKLISSFFpGLPC 45
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
401-802 |
6.08e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 47.75 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 401 TKEPAPTtPKEPAPTTTKEPAPTTTKSAPTTP-KEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 479
Cdd:PHA03378 438 TEQPRAT-PHSQAPTVVLHRPPTQPLEGPTGPlSVQAPLEPWQPLPHPQVTPVILHQPPAQGVQAHGSMLDLLEKDDEDM 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 480 KEPAPTAPKKPAPTTPK--EPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTpKEPSPTTT 557
Cdd:PHA03378 517 EQRVMATLLPPSPPQPRagRRAPCVYTEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLAS-SAPSYAQT 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 558 KEPAPTTPKEPAPTTPKKPAPTTP---KEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTpeklaP 634
Cdd:PHA03378 596 PWPVPHPSQTPEPPTTQSHIPETSaprQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQI-----G 670
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 635 TTPEKPAPTTPeelapttpeeptpttpeepAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAP 714
Cdd:PHA03378 671 HIPYQPSPTGA-------------------NTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAP 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 715 TTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKE----PAPTTPKGTAPTT--LKE 788
Cdd:PHA03378 732 GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRprgaPTPQPPPQAGPTSmqLMP 811
|
410
....*....|....
gi 1370451476 789 PAPTTPKKPAPKEL 802
Cdd:PHA03378 812 RAAPGQQGPTKQIL 825
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
388-450 |
6.16e-05 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 47.69 E-value: 6.16e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 388 SAPTTPKEPAPtttkePAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKE 450
Cdd:COG5373 42 EAASAPAEPEP-----EAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAA 99
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
373-450 |
6.21e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 47.65 E-value: 6.21e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKE 450
Cdd:PRK14948 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSS 593
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
341-551 |
6.50e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 6.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 341 GPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEP 420
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 421 APTttkSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP 500
Cdd:PRK12323 453 APA---AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 501 TTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKE 551
Cdd:PRK12323 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
544-912 |
6.51e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.86 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 544 SAPTTPKEPSPTTTKEPAPTTPKEPAPTT------PKKPAPTT--PKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKE 615
Cdd:PHA03307 23 RPPATPGDAADDLLSGSQGQLVSDSAELAavtvvaGAAACDRFepPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 616 TAPTTPKKLTPTTPEKlAPTTPEKPAPTTPEELapTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKE 695
Cdd:PHA03307 103 EGSPTPPGPSSPDPPP-PTPPPASPPPSPAPDL--SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSP 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 696 PAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPApkelaptttkeptSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAP 775
Cdd:PHA03307 180 EETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI-------------SASASSPAPAPGRSAADDAGASSSDSSSSESSG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 776 TTPKGTAPTTLKEPAP-TTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPPPTT 854
Cdd:PHA03307 247 CGWGPENECPLPRPAPiTLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSS 326
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 855 SEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPK--EPGVPTTKTPAATKPEMT 912
Cdd:PHA03307 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkrPRPSRAPSSPAASAGRPT 386
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
500-689 |
7.00e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 47.34 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 500 PTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPspTTTKEPAPTTPKEPAPTTPKKPAPT 579
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEP--VVVAEPQPEEVVVVETTHPEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 580 TPKEPAPTTPKEPAPTTTKKPAPTTPKEPAP-TTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTP 658
Cdd:PRK10811 924 VTEQPQVITESDVAVAQEVAEHAEPVVEPQDeTADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003
|
170 180 190
....*....|....*....|....*....|.
gi 1370451476 659 TTPEEPAPTTPKAAAPNTpKEPAPTTPKEPA 689
Cdd:PRK10811 1004 AQVPEATVEHNHATAPMT-RAPAPEYVPEAP 1033
|
|
| PHA03369 |
PHA03369 |
capsid maturational protease; Provisional |
498-792 |
7.68e-05 |
|
capsid maturational protease; Provisional
Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 47.30 E-value: 7.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 498 PAPTTPKEPAPTTTKEPSPTTPKEPAPtttksaptttkEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKP- 576
Cdd:PHA03369 354 TAPSRVLAAAAKVAVIAAPQTHTGPAD-----------RQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPq 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 577 APTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPE------KLAPTTPEKPAPTTPEELAP 650
Cdd:PHA03369 423 SPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGGELKEelietlKLVKKLKEEQESLAKELEAT 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 651 TTPEEPTPTTPEEPAPTTPKAAAPNTpkEPAPTTPkEPAPTTpKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKP-- 728
Cdd:PHA03369 503 AHKSEIKKIAESEFKNAGAKTAAANI--EPNCSAD-AAAPAT-KRARPETKTELEAVVRFPYQIRNMESPAFVHSFTStt 578
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 729 ----------APKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPT-TPKEPAPTTPKGTAPTTLKEPAPT 792
Cdd:PHA03369 579 laaaagqgsdTAEALAGAIETLLTQASAQPAGLSLPAPAVPVNASTPASTpPPLAPQEPPQPGTSAPSLETSLPQ 653
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
639-803 |
8.02e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.17 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPTTPEelAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTP----KGTAP 714
Cdd:PRK07994 360 HPAAPLPE--PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqraQGATK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 715 TTLKEPAPTTPKKPAPKELAptttKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTP 794
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALE----RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELA 513
|
....*....
gi 1370451476 795 KKPAPKELA 803
Cdd:PRK07994 514 AKLAAEAIE 522
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
489-584 |
8.25e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 489 KPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPkepaptttksaptttkePAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEP 568
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAP-----------------AAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99
|
90
....*....|....*.
gi 1370451476 569 APTTPKKPAPTTPKEP 584
Cdd:PRK12270 100 PAAAAAAAPAAAAVED 115
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
376-440 |
8.86e-05 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 46.43 E-value: 8.86e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370451476 376 TTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTT-PKEPAPTTP 440
Cdd:TIGR00601 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATaPESPSTSVP 140
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
475-872 |
9.05e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.09 E-value: 9.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 475 APTTPKEPAPTAPKKPAPTTPKEPAPTTpkEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTT-KSAPTTPKEPS 553
Cdd:PHA03307 24 PPATPGDAADDLLSGSQGQLVSDSAELA--AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTwSLSTLAPASPA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 554 PTTTKEPAPTTPKEPAPTTPKKPAPttPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKkltpttpekla 633
Cdd:PHA03307 102 REGSPTPPGPSSPDPPPPTPPPASP--PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS----------- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 634 PTTPEKPAPTTPEElapttpeeptpttpeepapttpkAAAPNTPKEPAPTTPkEPAPTTPKEPAPTTPKETAPTTPKGTA 713
Cdd:PHA03307 169 SRQAALPLSSPEET-----------------------ARAPSSPPAEPPPST-PPAAASPRPPRRSSPISASASSPAPAP 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 714 PTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPttpkGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPtT 793
Cdd:PHA03307 225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP----ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP-S 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 794 PKKPAPKELAPTTTK-----GPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTT 868
Cdd:PHA03307 300 PSSPGSGPAPSSPRAsssssSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPA 379
|
....
gi 1370451476 869 IHKS 872
Cdd:PHA03307 380 ASAG 383
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
543-617 |
9.21e-05 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 9.21e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 543 KSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETA 617
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
322-578 |
9.56e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 47.15 E-value: 9.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 322 APTSKVLAKPTPKAETttkgPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPA-PTT 400
Cdd:PRK07003 401 AVTGAAGAALAPKAAA----AAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAdSGS 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 401 TKEPAPTTPkepaPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTtpkepapttpkeptpttpkepaptTKEPAPttPK 480
Cdd:PRK07003 477 ASAPASDAP----PDAAFEPAPRAAAPSAATPAAVPDARAPAAASR------------------------EDAPAA--AA 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 481 EPAPTAPkKPAPTTPKEPAPTTPKEPA-----PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPT 555
Cdd:PRK07003 527 PPAPEAR-PPTPAAAAPAARAGGAAAAldvlrNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAAT 605
|
250 260
....*....|....*....|...
gi 1370451476 556 TTKEPAPTTPKEPAPTTPKKPAP 578
Cdd:PRK07003 606 GDAPPNGAARAEQAAESRGAPPP 628
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
475-729 |
9.72e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.00 E-value: 9.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 475 APTTPKEPAPtapkkPAPTTPKEPAPTT--------PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAP 546
Cdd:PRK10263 335 APVEPVTQTP-----PVASVDVPPAQPTvawqpvpgPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 547 TTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTP 626
Cdd:PRK10263 410 PAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPV 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 627 TTPEKLA-PTTPEKPAPTTPEELAPTTPEEPTPTTPEEPApttpkaaAPNTPKEPAPTTPKEPAPTTPKEPaPTTPKETA 705
Cdd:PRK10263 490 VEPEPVVeETKPARPPLYYFEEVEEKRAREREQLAAWYQP-------IPEPVKEPEPIKSSLKAPSVAAVP-PVEAAAAV 561
|
250 260
....*....|....*....|....
gi 1370451476 706 PTTPKGTAPTTLKEPAPTTPKKPA 729
Cdd:PRK10263 562 SPLASGVKKATLATGAAATVAAPV 585
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
404-578 |
1.19e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.40 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 404 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepaPTTKEPAPTTPKEPA 483
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS--------------------APQQAPAVPLPETTS 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 484 PTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPT-----TPKEPAPTTtkSAPTTTKEPAPTTTKSAPTTPKEPSPTTTK 558
Cdd:PRK07994 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSalerlASVRPAPSA--LEKAPAKKEAYRWKATNPVEVKKEPVATPK 498
|
170 180
....*....|....*....|
gi 1370451476 559 EPAPTTPKEPAPTTPKKPAP 578
Cdd:PRK07994 499 ALKKALEHEKTPELAAKLAA 518
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
392-488 |
1.21e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 46.81 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 392 TPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKepapttpkeptpttpkepaPTT 471
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP-------------------AAP 99
|
90
....*....|....*..
gi 1370451476 472 KEPAPTTPKEPAPTAPK 488
Cdd:PRK12270 100 PAAAAAAAPAAAAVEDE 116
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
374-561 |
1.33e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.57 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 374 APTTPKEPAPTTTKSAPTTpkEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTpKEPAPTTPkkpapttpkepap 453
Cdd:PRK10811 870 VAEVPVAAAVEPVVSAPVV--EAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT-EQPQVITE------------- 933
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 454 ttpkeptpTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPA-PTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPT 532
Cdd:PRK10811 934 --------SDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAePEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005
|
170 180
....*....|....*....|....*....
gi 1370451476 533 TTKEPAPTTTKSAPTTpKEPSPTTTKEPA 561
Cdd:PRK10811 1006 VPEATVEHNHATAPMT-RAPAPEYVPEAP 1033
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
560-734 |
1.37e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.40 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 560 PAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEK 639
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 640 PAPTTPEElapttpeePTPTTPEEPAPTTPKAAAPNTPKEPApttPKEPAPTTPKEPAPTtpKETAPTTPKGTAPTTLKE 719
Cdd:PRK07994 441 SEPAAASR--------ARPVNSALERLASVRPAPSALEKAPA---KKEAYRWKATNPVEV--KKEPVATPKALKKALEHE 507
|
170
....*....|....*
gi 1370451476 720 PAPTTPKKPAPKELA 734
Cdd:PRK07994 508 KTPELAAKLAAEAIE 522
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
427-554 |
1.52e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 46.25 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 427 SAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEP 506
Cdd:PRK14951 368 AAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1370451476 507 APTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSP 554
Cdd:PRK14951 448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
|
|
| Cornifin |
pfam02389 |
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
472-589 |
1.65e-04 |
|
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.
Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 43.12 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 472 KEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPaptttksaptttkepaptttksAPTTPKE 551
Cdd:pfam02389 28 KVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVP----------------------EPCSPKV 85
|
90 100 110
....*....|....*....|....*....|....*...
gi 1370451476 552 PSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:pfam02389 86 PEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPS 123
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
677-842 |
1.91e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 45.69 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 677 PKEPAPTTPKEPAPTTPKEP-APTTPKETAPTTPKGTA--------------PTTLKEPAPTTPKKPAPKEL-------- 733
Cdd:PLN03209 330 PKESDAADGPKPVPTKPVTPeAPSPPIEEEPPQPKAVVprplspytayedlkPPTSPIPTPPSSSPASSKSVdavakpae 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 734 --APTTTKEPTSTTSDKPAPTTPKGTAPTTP--KEPAPTTPKEPAPTTPKGTAPTTLKEPA-PTTPKKPAPKELAPTTTK 808
Cdd:PLN03209 410 pdVVPSPGSASNVPEVEPAQVEAKKTRPLSPyaRYEDLKPPTSPSPTAPTGVSPSVSSTSSvPAVPDTAPATAATDAAAP 489
|
170 180 190
....*....|....*....|....*....|....
gi 1370451476 809 GPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKP 842
Cdd:PLN03209 490 PPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAP 523
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
750-843 |
1.93e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.96 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 750 APTTPKGTAPTTPKEPAPTTPKePAPTTPKGTAPTTLKEPAPTTPKKPAPkelaptttkGPTSTTSDKPAPTTPKETAPT 829
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATP---------PPVPPRPVAPPVPHTPESAPK 430
|
90
....*....|....*.
gi 1370451476 830 TPKE--PAPTTPKKPA 843
Cdd:PRK14950 431 LTRAaiPVDEKPKYTP 446
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
409-576 |
1.95e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 45.72 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 409 PKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptPTTPKEPAPTTKEPAPTTPKEPAPTAPK 488
Cdd:PRK14948 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT------------TPSPPPAKASPPIPVPAEPTEPSPTPPA 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 489 KPAPTTPKE----------------------------------------------------------------------- 497
Cdd:PRK14948 431 NAANAPPSLnleelwqqilaklelpstrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnl 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 498 -----PAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTT 572
Cdd:PRK14948 511 esqsgSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590
|
....
gi 1370451476 573 PKKP 576
Cdd:PRK14948 591 DSSP 594
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
483-589 |
1.97e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 483 APTAPKKPAPTTPKEPAPTTP-KEPAPTTTKEPSPTTPkEPAPTTTKSAPTTTKEPAPTTtkSAPTTPKEPSPTTTKEPA 561
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVA--APAAAAPAAAPAAAPAAV 445
|
90 100
....*....|....*....|....*...
gi 1370451476 562 PTTPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVA 473
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
567-828 |
2.00e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.00 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 567 EPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPE 646
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 647 ELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTP----KEPAPT---TPKETAPTTPKGTAPTTLKE 719
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPpdaaFEPAPRaaaPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 720 P-APTTPKKPAPKELAPTTTKEPTSTTSDKPAP------------TTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTtl 786
Cdd:PRK07003 519 EdAPAAAAPPAPEARPPTPAAAAPAARAGGAAAaldvlrnagmrvSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV-- 596
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1370451476 787 kepapTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAP 828
Cdd:PRK07003 597 -----PTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP 633
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
373-552 |
2.05e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 45.72 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPkEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTT----- 447
Cdd:PRK14948 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT-TPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLnleel 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 448 --------------------------------------------PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPA 483
Cdd:PRK14948 445 wqqilaklelpstrmllsqqaelvsldsnraviavspnwlgmvqSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTP 524
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370451476 484 PTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEP 552
Cdd:PRK14948 525 PPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSS 593
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
613-839 |
2.08e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.64 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 613 PKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTT 692
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 693 PKEPAPTTPKETAPTTPkgtapttlkePAPTTPKKPAPKELAPTTtkeptsttsdKPAPTTPKgtapttPKEPAPTTPKE 772
Cdd:PRK12323 455 AAAPAAAARPAAAGPRP----------VAAAAAAAPARAAPAAAP----------APADDDPP------PWEELPPEFAS 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 773 PAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKEtAPTTPKEPAPTTP 839
Cdd:PRK12323 509 PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV-APRPPRASASGLP 574
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
320-573 |
2.37e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.93 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 320 DLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPT 399
Cdd:PHA03307 69 TGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPP 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 400 TTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepAPTTPKEPTPTTPKEPAPTTKEPAPTTP 479
Cdd:PHA03307 149 AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST---PPAAASPRPPRRSSPISASASSPAPAPG 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 480 KEPAPTAPKKPAPTTPKEPAPTTPKEpaptTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPtttkE 559
Cdd:PHA03307 226 RSAADDAGASSSDSSSSESSGCGWGP----ENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP----S 297
|
250
....*....|....
gi 1370451476 560 PAPTTPKEPAPTTP 573
Cdd:PHA03307 298 PSPSSPGSGPAPSS 311
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
765-858 |
2.54e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 45.65 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 765 PAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAptttkgptsttsdKPAPTTPKETAPTTPKEPAPTTPKKPAP 844
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA-------------AAAPAAPPKPAAAAAAAAAPAAPPAAAA 104
|
90
....*....|....
gi 1370451476 845 TTPETPPPTTSEVS 858
Cdd:PRK12270 105 AAAPAAAAVEDEVT 118
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
713-833 |
2.61e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.57 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 713 APTTLKEPAPTTPKKPAPKelaptttkeptsttSDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKgtapttlkePAPT 792
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPV--------------RPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP---------PRPV 417
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1370451476 793 TPKKPAPKELAPTTTKGPTsttsdkPAPTTPKETAPTTPKE 833
Cdd:PRK14950 418 APPVPHTPESAPKLTRAAI------PVDEKPKYTPPAPPKE 452
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
482-583 |
2.64e-04 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 45.23 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 482 PAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKsapttPKEPSPTTTKEPA 561
Cdd:COG3266 265 SAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAK-----PVVTETAAPAAPA 339
|
90 100
....*....|....*....|...
gi 1370451476 562 P-TTPKEPAPTTPKKPAPTTPKE 583
Cdd:COG3266 340 PeAAAAAAAPAAPAVAKKLAADE 362
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
384-799 |
2.69e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 45.68 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 384 TTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPT-TPKEPAPTTPKEPTPT 462
Cdd:pfam05109 413 TTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSpTPAGTTSGASPVTPSP 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 463 TPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTtPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKePAPTTT 542
Cdd:pfam05109 493 SPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTPTPNATSPTPAVTT-PTPNAT 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 543 KSAPTTPKEPSPTTTKEPAPTTP----KEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKepapttpkeTAP 618
Cdd:pfam05109 571 IPTLGKTSPTSAVTTPTPNATSPtvgeTSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITS---------SST 641
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 619 TTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAP 698
Cdd:pfam05109 642 SSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKP 721
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 699 TTPKETAPTTPKGT----APTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPA 774
Cdd:pfam05109 722 GEVNVTKGTPPKNAtspqAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPP 801
|
410 420
....*....|....*....|....*
gi 1370451476 775 PTTPKGTAPTTLKEPAPTTPKKPAP 799
Cdd:pfam05109 802 STSSKLRPRWTFTSPPVTTAQATVP 826
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
498-648 |
2.83e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 45.24 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 498 PAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTtksAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPA 577
Cdd:PRK07994 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQ---APAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370451476 578 PTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPA--------PTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEEL 648
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPAkkeayrwkATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAI 521
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
473-589 |
2.96e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 44.76 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 473 EPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPkePAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT-PKE 551
Cdd:NF040712 208 EPADARPEEVEPAPAAEGAPATDSDPAEAGT--PDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPaPGA 285
|
90 100 110
....*....|....*....|....*....|....*...
gi 1370451476 552 PSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTP 589
Cdd:NF040712 286 AETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPK 323
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
388-560 |
2.98e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 45.34 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 388 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPttpkePAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEP 467
Cdd:PRK14948 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP-----PAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 468 APT------TKEPAPTT-------------------------------------------------------PKEPAPTA 486
Cdd:PRK14948 441 LEElwqqilAKLELPSTrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesQSGSASNT 520
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 487 PKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEP 560
Cdd:PRK14948 521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
415-523 |
3.17e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.19 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 415 TTTKEPAPTTtksAPTTPKEPAPTTPkKPAPTTPkepapttpkeptpttpkepaPTTKEPAPTTPKEPAP-TAPKKPAPT 493
Cdd:PRK14950 359 LLVPVPAPQP---AKPTAAAPSPVRP-TPAPSTR--------------------PKAAAAANIPPKEPVReTATPPPVPP 414
|
90 100 110
....*....|....*....|....*....|..
gi 1370451476 494 TPKEPAPTTPKEPAPTTTKE--PSPTTPKEPA 523
Cdd:PRK14950 415 RPVAPPVPHTPESAPKLTRAaiPVDEKPKYTP 446
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
688-893 |
3.19e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 45.24 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 688 PAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAP 767
Cdd:PRK07994 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 768 TTPKEPAPTTPKGTAPttlKEPAPTTPKKPAPKELAPTTtkgptsttsDKPAPTTPKETAPTTPKEPapttpkKPAPTTp 847
Cdd:PRK07994 446 ASRARPVNSALERLAS---VRPAPSALEKAPAKKEAYRW---------KATNPVEVKKEPVATPKAL------KKALEH- 506
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1370451476 848 etpppttsevstptttkepttihkspdESTPELSAEPTPKALENSP 893
Cdd:PRK07994 507 ---------------------------EKTPELAAKLAAEAIERDP 525
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
394-703 |
3.36e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 45.45 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 394 KEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSApTTPKEPapttpKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKE 473
Cdd:PTZ00449 506 KHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKES-DEPKEG-----GKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKP 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKepAPTAPKKP----APTTPKEP-APTTPKEPA----PTTTKEP-SPTTPKEPAPTTTKSAPTTTKEPAPTTTK 543
Cdd:PTZ00449 580 EFPKDPK--HPKDPEEPkkpkRPRSAQRPtRPKSPKLPElldiPKSPKRPeSPKSPKRPPPPQRPSSPERPEGPKIIKSP 657
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 544 SAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPA--PTTPKETapttp 621
Cdd:PTZ00449 658 KPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPklPRDEEFP----- 732
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 622 kklTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKA----AAPNTPKEPA--PTTPKEPAPTTPKE 695
Cdd:PTZ00449 733 ---FEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEedihAETGEPDEAMkrPDSPSEHEDKPPGD 809
|
....*...
gi 1370451476 696 pAPTTPKE 703
Cdd:PTZ00449 810 -HPSLPKK 816
|
|
| DUF4045 |
pfam13254 |
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ... |
427-590 |
3.53e-04 |
|
Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.
Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 44.77 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 427 SAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEP 506
Cdd:pfam13254 195 GRPNSFKEVTPVGLMRSPAPGGHSKSPSVSGISADSSPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSEEP 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 507 APTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPttpkEPAPTTPKKP--APTTPKEP 584
Cdd:pfam13254 275 AAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSP----KPKPQSPPKDfrANLRSREV 350
|
....*.
gi 1370451476 585 APTTPK 590
Cdd:pfam13254 351 PKDKSK 356
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
639-734 |
4.04e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.88 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTtlk 718
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV--- 113
|
90
....*....|....*.
gi 1370451476 719 ePAPTTPKKPAPKELA 734
Cdd:PRK12270 114 -EDEVTPLRGAAAAVA 128
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
397-610 |
4.05e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.08 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 397 APTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTtPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAP 476
Cdd:PRK10263 324 AAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPG-PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQ 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 477 TTPKEPAPTAPKK-------PAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEP-APTTTKSAPTTTKEPAPTTTKSAPTT 548
Cdd:PRK10263 403 PQQPYYAPAAEQPaqqpyyaPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTfAPQSTYQTEQTYQQPAAQEPLYQQPQ 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 549 PKEPSPTttKEPAPTTpKEPAPTTPK----------------------KPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPK 606
Cdd:PRK10263 483 PVEQQPV--VEPEPVV-EETKPARPPlyyfeeveekrarereqlaawyQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAA 559
|
....
gi 1370451476 607 EPAP 610
Cdd:PRK10263 560 AVSP 563
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
536-798 |
4.29e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.84 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 536 EPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPA--------PTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKE 607
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGasavpavtAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 608 PAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKE 687
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 688 P-APTTPKEPAPttpkETAPTTPKGTAPttlkePAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKePA 766
Cdd:PRK07003 519 EdAPAAAAPPAP----EARPPTPAAAAP-----AARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPK-PA 588
|
250 260 270
....*....|....*....|....*....|..
gi 1370451476 767 PTTPKEPAPtTPKGTAPTTLKEPAPTTPKKPA 798
Cdd:PRK07003 589 APRVAVQVP-TPRARAATGDAPPNGAARAEQA 619
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
306-503 |
4.36e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 306 SAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTT 385
Cdd:PRK12323 379 AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAP 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 386 TKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTkePAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPK 465
Cdd:PRK12323 459 AAAARPAAAGPRPVAAAAAAAPARAAPAAAPA--PADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536
|
170 180 190
....*....|....*....|....*....|....*...
gi 1370451476 466 EPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTP 503
Cdd:PRK12323 537 AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
630-911 |
4.37e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 45.07 E-value: 4.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 630 EKLAPTTPEKP-----APTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTP----KEPAPTTPKEPAPTT 700
Cdd:PTZ00449 494 KKLAPIEEEDSdkhdePPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEgevgKKPGPAKEHKPSKIP 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 701 PKETAPTTPKgtAPTTLKEP-APTTPKKPAPKELAPTTTKEPTSTTSDKPApTTPKGTAPTTPKEP-APTTPKEPA-PTT 777
Cdd:PTZ00449 574 TLSKKPEFPK--DPKHPKDPeEPKKPKRPRSAQRPTRPKSPKLPELLDIPK-SPKRPESPKSPKRPpPPQRPSSPErPEG 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 778 PKgtAPTTLKEP-APTTPKKPAPKE--------LAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPA----------PTT 838
Cdd:PTZ00449 651 PK--IIKSPKPPkSPKPPFDPKFKEkfyddyldAAAKSKETKTTVVLDESFESILKETLPETPGTPFttprplppklPRD 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 839 PKKPAPTTPETPPPTTSEVSTPTTTKEPTT-IHKSPDES-----TPELSAEPTPKALENSPKE----PGVPT--TKTPAA 906
Cdd:PTZ00449 729 EEFPFEPIGDPDAEQPDDIEFFTPPEEERTfFHETPADTplpdiLAEEFKEEDIHAETGEPDEamkrPDSPSehEDKPPG 808
|
....*
gi 1370451476 907 TKPEM 911
Cdd:PTZ00449 809 DHPSL 813
|
|
| Cornifin |
pfam02389 |
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
402-522 |
4.46e-04 |
|
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.
Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 41.96 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 402 KEPAPTTPKEPAPTTTKEPAPTTTKSaPTTPKEPAPTTPKKPAPTTPKepapttpKEPTPTTPKEPAPTTKEPAPTTPKE 481
Cdd:pfam02389 6 KQPCQPPPQEPCVPTTKEPCHSKVPE-PCNPKVPEPCCPKVPEPCCPK-------VPEPCCPKVPEPCCPKVPEPCYPKV 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1370451476 482 PAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEP 522
Cdd:pfam02389 78 PEPCSPKVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVP 118
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
749-910 |
4.48e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 749 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTtPKKPAPKELAPTTTKGPTSTTSDK-PAPTTPKETA 827
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPaPAPAPAAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 828 PTTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEpttihksPDESTPELSAEPTPKALENSPKEPGVPTTKTPAAT 907
Cdd:PRK12323 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP-------PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532
|
...
gi 1370451476 908 KPE 910
Cdd:PRK12323 533 DPD 535
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
474-567 |
4.50e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 44.80 E-value: 4.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKePAPTAPKKPAPTTPKEPAPTTPkEPAPTTTKEPSPTTPkepaptttksaptttkePAPTTTKSAPTTPKE-- 551
Cdd:PRK14950 376 PSPVRPT-PAPSTRPKAAAAANIPPKEPVR-ETATPPPVPPRPVAP-----------------PVPHTPESAPKLTRAai 436
|
90
....*....|....*.
gi 1370451476 552 PSPTTTKEPAPTTPKE 567
Cdd:PRK14950 437 PVDEKPKYTPPAPPKE 452
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
544-762 |
4.59e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 544 SAPTTPKE-PSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPkepaptttkkpAPTTPKEPAPTTPKETAPTTPK 622
Cdd:PRK12323 372 AGPATAAAaPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARA-----------VAAAPARRSPAPEALAAARQAS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 623 KLTPTTPEKLAPTTPEKPAPTTPEelAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAP--TTPKEPAPTTPKEPAPT- 699
Cdd:PRK12323 441 ARGPGGAPAPAPAPAAAPAAAARP--AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQPDAAp 518
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 700 TPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPtsttsdkPAPTTPKGTAPTTP 762
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPV-------VAPRPPRASASGLP 574
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
359-432 |
5.86e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.50 E-value: 5.86e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 359 ASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTP 432
Cdd:PRK12270 46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
491-589 |
5.88e-04 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 44.07 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 491 APTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPkEPSPTTTKEPAPTTPKEPAP 570
Cdd:COG3266 254 ALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAA-APAEAAAPQPTAAKPVVTET 332
|
90 100
....*....|....*....|
gi 1370451476 571 TTPKKPAP-TTPKEPAPTTP 589
Cdd:COG3266 333 AAPAAPAPeAAAAAAAPAAP 352
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
671-839 |
6.10e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 44.26 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPkgTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPA 750
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVE--AVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQP 928
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 751 PTTPKGTAPTtpkepAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTtsdkPAPTTPKETAPTT 830
Cdd:PRK10811 929 QVITESDVAV-----AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE----VAAEVETVTAVEP 999
|
....*....
gi 1370451476 831 PKEPAPTTP 839
Cdd:PRK10811 1000 EVAPAQVPE 1008
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
671-843 |
6.59e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 44.26 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTpkEPAPTTPKEPAPTT-PKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPtttkeptsttsdkp 749
Cdd:PRK10811 875 VAAAVEPVVSAPVV--EAVAEVVEEPVVVAePQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAV-------------- 938
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 750 APTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKE--TA 827
Cdd:PRK10811 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNhaTA 1018
|
170
....*....|....*.
gi 1370451476 828 PTTpKEPAPTTPKKPA 843
Cdd:PRK10811 1019 PMT-RAPAPEYVPEAP 1033
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
696-922 |
6.68e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 696 PAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPkelaptttkeptsttsdKPAPTTPKGTAPTTPKEPAPTTPKEPAP 775
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAA-----------------APAAAAAARAVAAAPARRSPAPEALAAA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 776 TTPKGTAPTTLKEPAPTTPKKPAPKELAPTttkgptsttsdkPAPTTPKETAPTTPKEPAPTTPKKPAPTTPETPPPTTS 855
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPAAAARPAA------------AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPP 504
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 856 EVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEP-GVPTTKTPAATKPEMTTTAKDKTTER 922
Cdd:PRK12323 505 EFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPaAAPAPRAAAATEPVVAPRPPRASASG 572
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
377-519 |
7.27e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 377 TPKEPAPTTTKSAPTTPkEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTT--PKEPAPTTPKKPAPTTPKEPAPT 454
Cdd:NF040712 191 DFGRPLRPLATVPRLAR-EPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASarRRRAGVEQPEDEPVGPGAAPAAE 269
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 455 TPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTP 519
Cdd:NF040712 270 PDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
373-441 |
7.70e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.22 E-value: 7.70e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370451476 373 SAPTTPKEPAPtttkSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTkEPAPTTTKSAPTTPKEPAPTTPK 441
Cdd:COG5373 42 EAASAPAEPEP----EAAAAATAAAPEAAPAPVPEAPAAPPAAAE-APAPAAAAPPAEAEPAAAPAAAS 105
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
536-698 |
7.99e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.70 E-value: 7.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 536 EPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKE 615
Cdd:PRK07994 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 616 TAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEElapttpeeptpttpeEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKE 695
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPA---------------KKEAYRWKATNPVEVKKEPVATPKALKKALEHE 507
|
...
gi 1370451476 696 PAP 698
Cdd:PRK07994 508 KTP 510
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
426-523 |
8.08e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.11 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 426 KSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepapttkePAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKE 505
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPA-------------------------AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA 91
|
90
....*....|....*...
gi 1370451476 506 PAPTTTKEPSPTTPKEPA 523
Cdd:PRK12270 92 AAAAPAAPPAAAAAAAPA 109
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
545-647 |
8.11e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 545 APTTPKEPSPTTTKEPAPTTPKePAPTTPKKPAPTTPKEPAP----TTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPtt 620
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEpvreTATPPPVPPRPVAPPVPHTPESAPKLTRAAIP-- 437
|
90 100
....*....|....*....|....*..
gi 1370451476 621 pkkltpttpeklAPTTPEKPAPTTPEE 647
Cdd:PRK14950 438 ------------VDEKPKYTPPAPPKE 452
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
428-559 |
8.54e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 428 APTTPKEPAPTTPKKPAPTTPKepapttpkeptpttpkepapttkePAPTTPKEPAPTAPkkpAPTTPKEPAPTTPKEPA 507
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPT------------------------PAPSTRPKAAAAAN---IPPKEPVRETATPPPVP 413
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 508 PTTTKEPSPTTPKEPaptttksaptttkEPAPTTTKSAPTTPKEPSPTTTKE 559
Cdd:PRK14950 414 PRPVAPPVPHTPESA-------------PKLTRAAIPVDEKPKYTPPAPPKE 452
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
371-443 |
9.02e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 43.80 E-value: 9.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 371 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKP 443
Cdd:PRK14948 522 KTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
671-785 |
9.06e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 9.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPT---TPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSD 747
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAaapAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466
|
90 100 110
....*....|....*....|....*....|....*...
gi 1370451476 748 KPAPTTPkgTAPTTPKEPAPTTPKEPAPTTPKGTAPTT 785
Cdd:PRK07764 467 APAPAAA--PEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
486-613 |
9.80e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.55 E-value: 9.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 486 APKKPAPTTPKEPAPTTPKEPAPtttkEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTP 565
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPAA----APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1370451476 566 KEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTP 613
Cdd:PRK14951 445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
372-500 |
1.08e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.55 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 372 KSAPTTPKE----PAPTTTKSAPTTPKEPAPTTTkePAPTTPKEPAPtttkepaptttkSAPTTPKEPAPTTPKKPAPTT 447
Cdd:PRK14951 378 KKTPARPEAaapaAAPVAQAAAAPAPAAAPAAAA--SAPAAPPAAAP------------PAPVAAPAAAAPAAAPAAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 448 PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPkKPAPTTPKEPAP 500
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP-AAARLTPTEEGD 495
|
|
| Cornifin |
pfam02389 |
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
378-508 |
1.08e-03 |
|
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.
Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 40.81 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 378 PKEPAPTTTKSaPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSA-PTTPKEPAPTTPKKPAPTTPkepapttp 456
Cdd:pfam02389 13 PQEPCVPTTKE-PCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPePCCPKVPEPCYPKVPEPCSP-------- 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 457 keptpttpkepapttKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAP 508
Cdd:pfam02389 84 ---------------KVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
383-519 |
1.16e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.83 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 383 PTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPT 462
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAE 269
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 463 TPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTtpkEPAPTTPKEPAPTTTKEPSPTTP 519
Cdd:NF040712 270 PDEATRDAGEPPAPGAAETPEAAEPPAPAPA---APAAPAAPEAEEPARPEPPPAPK 323
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
305-584 |
1.16e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 305 TSAKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPA-----LTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPK 379
Cdd:pfam17823 97 LSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAalpseAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 380 EPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTT----TKSAPTTPKEPAPTTPKKPAPTTPKEPAPTT 455
Cdd:pfam17823 177 TAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHpaagTALAAVGNSSPAAGTVTAAVGTVTPAALATL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 456 PKEPTPTTPKEPAPTTKEPAPTTPKE----PAPTAPKKPAPTTPKEPAPTTPK----EPAPTTTKEPSPTTPKEPAPTTT 527
Cdd:pfam17823 257 AAAAGTVASAAGTINMGDPHARRLSPakhmPSDTMARNPAAPMGAQAQGPIIQvstdQPVHNTAGEPTPSPSNTTLEPNT 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 528 KSAPTTTKEPAPTTTKSA---PTTPKEPSPTTTKEP-----APTTPKEPAPTTPKKPAPTTPKEP 584
Cdd:pfam17823 337 PKSVASTNLAVVTTTKAQakePSASPVPVLHTSMIPeveatSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
475-542 |
1.25e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.96 E-value: 1.25e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 475 APTTPKEPAPTAPKKPAPTTPkePAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTT 542
Cdd:TIGR00601 82 GKVAPPAATPTSAPTPTPSPP--ASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAA 147
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
509-878 |
1.27e-03 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.22 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 509 TTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPkepAPTTPKKPAPTTPKEPAPTT 588
Cdd:NF033839 119 STSKSQLQKLMMESQSKVDEAVSKFEKDSSSSSSSGSSTKPETPQPENPEHQKPTTP---APDTKPSPQPEGKKPSVPDI 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 589 PKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTT 668
Cdd:NF033839 196 NQEKEKAKLAVATYMSKILDDIQKHHLQKEKHRQIVALIKELDELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKF 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 669 PKAAAPNTPKEP------APTTPKEPAPTTPKEPAPTTPKETAP-TTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEP 741
Cdd:NF033839 276 KKGLTQDTPKEPgnkkpsAPKPGMQPSPQPEKKEVKPEPETPKPeVKPQLEKPKPEVKPQPEKPKPEVKPQLETPKPEVK 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 742 TSTTSDKPApTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPK-KPAPKELAPTTTKGPTSTTSD-KPA 819
Cdd:NF033839 356 PQPEKPKPE-VKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEvKPQPEKPKPEVKPQPEKPKPEvKPQ 434
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 820 PTTPK---ETAPTTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTP 878
Cdd:NF033839 435 PEKPKpevKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKP 496
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
748-923 |
1.32e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.32 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 748 KPAPTTPKGTAPTTPKEPAPTtpkEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETA 827
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAAS---AQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 828 PTTPKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHkSPDESTPELSAEP---TPKALENSPKEPgvpttKTp 904
Cdd:PRK07994 437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY-RWKATNPVEVKKEpvaTPKALKKALEHE-----KT- 509
|
170
....*....|....*....
gi 1370451476 905 aatkPEMTTTAKDKTTERD 923
Cdd:PRK07994 510 ----PELAAKLAAEAIERD 524
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
671-779 |
1.35e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 43.23 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTlkEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPA 750
Cdd:PRK14971 387 AAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPP--AAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464
|
90 100
....*....|....*....|....*....
gi 1370451476 751 PTTPKGTAPTTPKEPAPTTPKEPAPTTPK 779
Cdd:PRK14971 465 SLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
374-589 |
1.39e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.13 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 374 APTTPKEPAPTTTKSAPTTPKE-PAPTTTKEPAPTTPKEPAPTTTKEPAPTTTksaPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:PHA03378 650 TPHQPPQVEITPYKPTWTQIGHiPYQPSPTGANTMLPIQWAPGTMQPPPRAPT---PMRPPAAPPGRAQRPAAATGRARP 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 PTTPKEPTPTTPKEpapttkePAPTTPKEPAPTAPKKPAPT-TPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAP 531
Cdd:PHA03378 727 PAAAPGRARPPAAA-------PGRARPPAAAPGRARPPAAApGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPP 799
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 532 TTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTpKKPAPTTPKEPAPTTP 589
Cdd:PHA03378 800 PQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSL-KKPAALERQAAAGPTP 856
|
|
| Cornifin |
pfam02389 |
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
674-799 |
1.41e-03 |
|
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.
Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 40.42 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 674 PNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPkelaptttkeptsTTSDKPAPTT 753
Cdd:pfam02389 8 PCQPPPQEPCVPTTKEPCHSKVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEP-------------CCPKVPEPCY 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1370451476 754 PKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAP 799
Cdd:pfam02389 75 PKVPEPCSPKVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEP 120
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
311-450 |
1.46e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 42.91 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 311 QSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPAlTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAP 390
Cdd:COG3266 236 AAEVLTARLVLLLLIIGSALKAPSQASSASAPA-TTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAP 314
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 391 TTPKEPAPTTTKepapttPKEPAPTTTKEPAPTTTKSApttpkePAPTTPKKPAPTTPKE 450
Cdd:COG3266 315 AEAAAPQPTAAK------PVVTETAAPAAPAPEAAAAA------AAPAAPAVAKKLAADE 362
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
639-780 |
1.50e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.78 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 639 KPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPT-TPKEPAPTTPKEPAPTTPKETAPTTPKGTAPTTL 717
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 718 KEPAPTTPKKPAPKELAPtttkeptsttsdkPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKG 780
Cdd:PRK14951 445 VALAPAPPAQAAPETVAI-------------PVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
326-572 |
1.59e-03 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.83 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 326 KVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEP-APTTTKEP 404
Cdd:NF033839 277 KGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLeTPKPEVKP 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 405 APTTPKEPAPTTTKEPAPTTtKSAPTTPK---EPAPTTPK---KPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTT 478
Cdd:NF033839 357 QPEKPKPEVKPQPEKPKPEV-KPQPETPKpevKPQPEKPKpevKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 479 PKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTK 558
Cdd:NF033839 436 EKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQASTN 515
|
250
....*....|....
gi 1370451476 559 EPAPTTPKEPAPTT 572
Cdd:NF033839 516 EKATNKPKKSLPST 529
|
|
| TALPID3 |
pfam15324 |
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ... |
488-719 |
1.69e-03 |
|
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.
Pssm-ID: 434634 [Multi-domain] Cd Length: 1288 Bit Score: 42.95 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 488 KKPAPTTPKEPAPTTPKE---PAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTT 564
Cdd:pfam15324 964 QREPPVAASVPGDLPTKEtllPTPVPTPQPTPPCSPPSPLKEPSPVKTPDSSPCVSEHDFFPVKEIPPEKGADTGPAVSL 1043
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 565 PKEPAPTtpkkPAPTTPKEPAPTTPkepapTTTKKPAPTTPKEPAPTTPKETAPttpkkltpttpeklAPTTPEKPAPTT 644
Cdd:pfam15324 1044 VITPTVT----PIATPPPAATPTPP-----LSENSIDKLKSPSPELPKPWEDSD--------------LPLEEENPNSEQ 1100
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 645 PEelapttPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKepaPTTPKEPAPTTPKETAPTTPKGTAPTTLKE 719
Cdd:pfam15324 1101 EE------LHPRAVVMSVARDEEPESVVLPASPPEPKPLAPP---PLGAAPPSPPQSPSSSSSTLESSSSLTVTE 1166
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
565-840 |
1.73e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.61 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 565 PKEPAPTTPKKPAPTTPKEPAPTTPKEPAptttkkpapttpkepapTTPKETAPTTPKKLTPTTPEKLAPttpekpaPTT 644
Cdd:PLN03209 330 PKESDAADGPKPVPTKPVTPEAPSPPIEE-----------------EPPQPKAVVPRPLSPYTAYEDLKP-------PTS 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 645 PeelapttpeepTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTP-KEPAPTTPKETAPTTPKgTAPTTLKEPAPT 723
Cdd:PLN03209 386 P-----------IPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPeVEPAQVEAKKTRPLSPY-ARYEDLKPPTSP 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 724 TPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPK----EPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAP 799
Cdd:PLN03209 454 SPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANmrplSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVG 533
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1370451476 800 KELAPTTTKGPTSTTSDKPAPTTP----KETAPttPKEPAPTTPK 840
Cdd:PLN03209 534 NSAPPTALADEQHHAQPKPRPLSPytmyEDLKP--PTSPTPSPVL 576
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
377-588 |
1.85e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 377 TPKEPAPTTTKSAPTTPKEPAPTTTKEP-------APTTPKEPAPTTTKEPAPTTTKSAPTT-------------PKEPA 436
Cdd:PHA03247 268 APETARGATGPPPPPEAAAPNGAAAPPDgvwgaalAGAPLALPAPPDPPPPAPAGDAEEEDDedgamevvsplprPRQHY 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 437 PTT-PKKPAPT-TPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTpKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEP 514
Cdd:PHA03247 348 PLGfPKRRRPTwTPPSSLEDLSAGRHHPKRASLPTRKRRSARHA-ATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPAS 426
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 515 SPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTT 588
Cdd:PHA03247 427 APPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGADLAELLGRHPDT 500
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
389-549 |
1.85e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 42.66 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 389 APTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKS--APTTPKEPA-PTTPKKPAPTTPKEPAPTTPKEPTPTT-- 463
Cdd:PRK13108 275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASavGPVGPGEPNqPDDVAEAVKAEVAEVTDEVAAESVVQVad 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 464 ----PKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAP 539
Cdd:PRK13108 355 rdgeSTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAV 434
|
170
....*....|
gi 1370451476 540 TTTKSAPTTP 549
Cdd:PRK13108 435 AGPGDDPAEP 444
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
359-514 |
2.08e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.72 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 359 ASTTPKEPTPTTIKSAPTTPKEPAPTTtksapttpkEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPT---TPKEP 435
Cdd:PRK10811 876 AAAVEPVVSAPVVEAVAEVVEEPVVVA---------EPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVaqeVAEHA 946
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 436 APTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEP--------APTTpKEPA 507
Cdd:PRK10811 947 EPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAtvehnhatAPMT-RAPA 1025
|
....*..
gi 1370451476 508 PTTTKEP 514
Cdd:PRK10811 1026 PEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
427-589 |
2.26e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.72 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 427 SAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTkEPAPTTPKEPAPTAPkkPAPTTPKEPAPTTPKEP 506
Cdd:PRK10811 844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVV-EAVAEVVEEPVVVAE--PQPEEVVVVETTHPEVI 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 507 APTTTKEPSPTTPKE-------PAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPsPTTTKEPAPTTPKEPAPTTPKKPAPT 579
Cdd:PRK10811 921 AAPVTEQPQVITESDvavaqevAEHAEPVVEPQDETADIEEAAETAEVVVAEP-EVVAQPAAPVVAEVAAEVETVTAVEP 999
|
170
....*....|
gi 1370451476 580 TPKEPAPTTP 589
Cdd:PRK10811 1000 EVAPAQVPEA 1009
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
695-906 |
2.44e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 695 EPAPTTPKETAPTTPkGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPttpkEPAPTTPKEPA 774
Cdd:PRK07003 359 EPAVTGGGAPGGGVP-ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATR----AEAPPAAPAPP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 775 PTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKgptsttsDKPAPTTPKETAPTTPKEPAPttPKKPAPTTPETPPPTT 854
Cdd:PRK07003 434 ATADRGDDAADGDAPVPAKANARASADSRCDERD-------AQPPADSGSASAPASDAPPDA--AFEPAPRAAAPSAATP 504
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1370451476 855 SEVSTPTTTKEpttihkSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAA 906
Cdd:PRK07003 505 AAVPDARAPAA------ASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAA 550
|
|
| PRK13914 |
PRK13914 |
invasion associated endopeptidase; |
371-565 |
2.58e-03 |
|
invasion associated endopeptidase;
Pssm-ID: 237555 [Multi-domain] Cd Length: 481 Bit Score: 42.10 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 371 IKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEpAPTTTKSAPT-TPKEPAPTTPKKPAPTTPK 449
Cdd:PRK13914 143 VTSTPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKE-TPVVDQNATThAVKSGDTIWALSVKYGVSV 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 450 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTP-----KEPAPTAPKKPAP----TTPKEPAPTTPKEPAP---TTTKEPSPT 517
Cdd:PRK13914 222 QDIMSWNNLSSSSIYVGQKLAIKQTANTATpkaevKTEAPAAEKQAAPvvkeNTNTNTATTEKKETTTqqqTAPKAPTEA 301
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1370451476 518 TPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTP 565
Cdd:PRK13914 302 AKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNS 349
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
382-448 |
2.81e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 42.24 E-value: 2.81e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 382 APTTTKSAPT---TPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPtttkSAPTTPKEPAPTTPKKPAPTTP 448
Cdd:PRK14954 381 APSPAGSPDVkkkAPEPDLPQPDRHPGPAKPEAPGARPAELPSP----ASAPTPEQQPPVARSAPLPPSP 446
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
396-585 |
3.04e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 396 PAPTTTKEPAPTTPKEPAPTTTKePAPTTTKSAPTTPKEPAP---------TTPKKPAPTTPKEPAPTTPKEPTPTTPKE 466
Cdd:PHA03247 255 PAPPPVVGEGADRAPETARGATG-PPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEEEDDEDGA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 467 PAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTT------PKEPAPTTTKEPSP--TTPKEPAPTTTKSAPTTTKEPA 538
Cdd:PHA03247 334 MEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSagrhhpKRASLPTRKRRSARhaATPFARGPGGDDQTRPAAPVPA 413
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1370451476 539 PTTTKSAPTTPK-EPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPA 585
Cdd:PHA03247 414 SVPTPAPTPVPAsAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEP 461
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
537-730 |
3.27e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 537 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKET 616
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 617 APTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNtPKEPAPTTPKEPAPTTPKEP 696
Cdd:PRK12323 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPA-QPDAAPAGWVAESIPDPATA 532
|
170 180 190
....*....|....*....|....*....|....
gi 1370451476 697 APTTPKETAPTtpkgtAPTTLKEPAPTTPKKPAP 730
Cdd:PRK12323 533 DPDDAFETLAP-----APAAAPAPRAAAATEPVV 561
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
634-843 |
3.30e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 634 PTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAP---------TTPKEPAPTTPKEPAPTTPKET 704
Cdd:PHA03247 247 PLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDgvwgaalagAPLALPAPPDPPPPAPAGDAEE 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 705 ApTTPKGTAPTTLKEPAPTT------PKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTP 778
Cdd:PHA03247 327 E-DDEDGAMEVVSPLPRPRQhyplgfPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQT 405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 779 KGTAPTTLKEPAPTTPKKPAPKELAPTTTKgptsttsdkPAPTTPKETAPTTPKEPAPTTPKKPA 843
Cdd:PHA03247 406 RPAAPVPASVPTPAPTPVPASAPPPPATPL---------PSAEPGSDDGPAPPPERQPPAPATEP 461
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
518-585 |
3.41e-03 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 40.80 E-value: 3.41e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 518 TPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTP--KEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPA 585
Cdd:PRK12757 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPprQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
383-574 |
3.65e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 383 PTTTKSAPTTPKEPAPTTTKEPA----PTTPKEPAPTTTKEPAPTTTKSAPttpkePAPTTPKKPAPTTPKEPAPTTPKE 458
Cdd:PHA03378 676 PSPTGANTMLPIQWAPGTMQPPPraptPMRPPAAPPGRAQRPAAATGRARP-----PAAAPGRARPPAAAPGRARPPAAA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 459 PTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPA 538
Cdd:PHA03378 751 PGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLT 830
|
170 180 190
....*....|....*....|....*....|....*.
gi 1370451476 539 PTTTKSAPTTpKEPSPTTTKEPAPTTPKEPAPTTPK 574
Cdd:PHA03378 831 GGVKRGRPSL-KKPAALERQAAAGPTPSPGSGTSDK 865
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
474-590 |
4.10e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 40.44 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPK-EP 552
Cdd:PRK10819 42 PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKrEV 121
|
90 100 110
....*....|....*....|....*....|....*...
gi 1370451476 553 SPTTTKEPAPTTPKEPAPTTPKKPAPTTPKePAPTTPK 590
Cdd:PRK10819 122 KPVEPRPASPFENTAPARPTSSTATAAASK-PVTSVSS 158
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
633-721 |
4.34e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.80 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 633 APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKgt 712
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE-- 116
|
....*....
gi 1370451476 713 aPTTLKEPA 721
Cdd:PRK12270 117 -VTPLRGAA 124
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
537-609 |
4.50e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.33 E-value: 4.50e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 537 PAPTTTKSAPTTPKEPSPTTTKEPAP----TTPKEPAPTTPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPA 609
Cdd:PRK14950 376 PSPVRPTPAPSTRPKAAAAANIPPKEpvreTATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
707-832 |
4.77e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 41.30 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 707 TTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTL 786
Cdd:PRK14971 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1370451476 787 KEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPK 832
Cdd:PRK14971 448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQ 493
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
474-570 |
5.10e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 41.08 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPttpkepaptttksaptttkEPAPTTTKSAPTTPKEPS 553
Cdd:PRK14954 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSP-------------------ASAPTPEQQPPVARSAPL 442
|
90
....*....|....*..
gi 1370451476 554 PTTTKEPAPTTPKEPAP 570
Cdd:PRK14954 443 PPSPQASAPRNVASGKP 459
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
477-588 |
5.21e-03 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 40.69 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 477 TTPKEPAPTAPKKPAPTTPKEPA-PTTPKEPAPTTTKEPSPTTPKEPAPTttksaptttkepAPTTTKSAPTTPKEPSPT 555
Cdd:PRK10905 122 TLPTEPATVAPVRNGNASRQTAKtQTAERPATTRPARKQAVIEPKKPQAT------------AKTEPKPVAQTPKRTEPA 189
|
90 100 110
....*....|....*....|....*....|...
gi 1370451476 556 TTKEPAPTtpkePAPTTPKKPAPTTPKEPAPTT 588
Cdd:PRK10905 190 APVASTKA----PAATSTPAPKETATTAPVQTA 218
|
|
| PRK13914 |
PRK13914 |
invasion associated endopeptidase; |
373-580 |
5.35e-03 |
|
invasion associated endopeptidase;
Pssm-ID: 237555 [Multi-domain] Cd Length: 481 Bit Score: 40.94 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPapttpKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:PRK13914 142 KVTSTPVAPTQEVKKETTTQQAAPAAETKTEV-----KQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVK 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 453 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKpapTTPKEPAPTTPKEPAP----------TTTKEPSPTTPKEP 522
Cdd:PRK13914 217 YGVSVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPK---AEVKTEAPAAEKQAAPvvkentntntATTEKKETTTQQQT 293
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 523 APTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTT 580
Cdd:PRK13914 294 APKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNT 351
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
323-448 |
5.43e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.24 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 323 PTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTpttiKSAPTTPKEPAPtttkSAPTTPKEPAPTTTK 402
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAA----ASAPAAPPAAAP----PAPVAAPAAAAPAAA 437
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1370451476 403 EPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTP 448
Cdd:PRK14951 438 PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
383-493 |
5.54e-03 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 39.99 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 383 PTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPapttpkeptpt 462
Cdd:PRK11633 57 PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKV----------- 125
|
90 100 110
....*....|....*....|....*....|.
gi 1370451476 463 tpkepapttkEPAPTTPKEPAPTAPKKPAPT 493
Cdd:PRK11633 126 ----------EAPPAPKPEPKPVVEEKAAPT 146
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
328-559 |
5.62e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 41.23 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 328 LAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSA-PTTPKEPAPTTTKEPAP 406
Cdd:PRK08691 361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAgPVSNQENNDVPPWEDAP 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 407 TTPKEPAPTTTKEPAPTTTKSAPTTPkepapttpkkpapttPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP-KEPAPT 485
Cdd:PRK08691 441 DEAQTAAGTAQTSAKSIQTASEAETP---------------PENQVSKNKAADNETDAPLSEVPSENPIQATPnDEAVET 505
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370451476 486 APKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSaPTTPKEPSPTTTKE 559
Cdd:PRK08691 506 ETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGG-NNTPSAPPPEFSTE 578
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
632-732 |
5.67e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.95 E-value: 5.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 632 LAPTTPEKPAPTTPEelapttPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTT-PKEPAPTTPKEPAPTTPKETAPTTPK 710
Cdd:PRK14950 360 LVPVPAPQPAKPTAA------APSPVRPTPAPSTRPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTR 433
|
90 100
....*....|....*....|..
gi 1370451476 711 GTAPTtlkEPAPTTPKKPAPKE 732
Cdd:PRK14950 434 AAIPV---DEKPKYTPPAPPKE 452
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
488-548 |
5.98e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 5.98e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 488 KKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT 548
Cdd:TIGR00601 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPST 137
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
372-500 |
6.11e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.91 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 372 KSAPTTPKEPA-PTTTKSAPTTPkePAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKE 450
Cdd:PRK14971 369 ASGGRGPKQHIkPVFTQPAAAPQ--PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA 446
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1370451476 451 paPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP 500
Cdd:PRK14971 447 --VRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQK 494
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
670-732 |
6.25e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.14 E-value: 6.25e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 670 KAAAPNTPKEPAPT---TPKEPAPTTPKEPAPTTPkETAPTTPKGTAPTTLKEPAPTTP-KKPAPKE 732
Cdd:COG5373 40 AAEAASAPAEPEPEaaaAATAAAPEAAPAPVPEAP-AAPPAAAEAPAPAAAAPPAEAEPaAAPAAAS 105
|
|
| Chi1 |
COG3469 |
Chitinase [Carbohydrate transport and metabolism]; |
373-520 |
6.26e-03 |
|
Chitinase [Carbohydrate transport and metabolism];
Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 40.89 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 373 SAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPA 452
Cdd:COG3469 67 SSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGS 146
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 453 PTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPK 520
Cdd:COG3469 147 TTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPK 214
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
496-572 |
6.30e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.14 E-value: 6.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 496 KEPAPTTPKEPAPTTTKEPSPTTPkepaptttksapTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTT 572
Cdd:COG5373 40 AAEAASAPAEPEPEAAAAATAAAP------------EAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAA 104
|
|
| PRK13335 |
PRK13335 |
superantigen-like protein SSL3; Reviewed; |
304-441 |
6.55e-03 |
|
superantigen-like protein SSL3; Reviewed;
Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 40.49 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 304 TTSAKETQSIEKTSAkDLAPTSKV--LAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEP 381
Cdd:PRK13335 24 TTQSVKAEKIQSTKV-DKVPTLKAerLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEE 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 382 APTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAP-----TTTKSAPTTPKEPAPTTPK 441
Cdd:PRK13335 103 QKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPmqstkSDTPQSPTIKQAQTDMTPK 167
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
299-419 |
6.61e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.95 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 299 DGKEKTTS----AKETQSIEKTSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPAsttpkeptpttiKSA 374
Cdd:PRK14950 338 DFQLRTTSygqlPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEP------------VRE 405
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1370451476 375 PTTPKEPAPTTTKSAPTTPKEPAPTTTKE--PAPTTPKEPAPTTTKE 419
Cdd:PRK14950 406 TATPPPVPPRPVAPPVPHTPESAPKLTRAaiPVDEKPKYTPPAPPKE 452
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
474-523 |
6.78e-03 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 40.03 E-value: 6.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1370451476 474 PAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPA 523
Cdd:PRK12757 131 PATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
359-516 |
7.09e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 40.72 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 359 ASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEP--- 435
Cdd:PRK14948 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPsln 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 436 ----------------------------------------------------------------------------APTT 439
Cdd:PRK14948 441 leelwqqilaklelpstrmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesqsgsASNT 520
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1370451476 440 PKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKepaPTTPKEPAPTTTKEPSP 516
Cdd:PRK14948 521 AKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP---PPIPEEPTPSPTKDSSP 594
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
677-734 |
7.23e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 40.70 E-value: 7.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 677 PKEPAPTTPKEPAPTTPKEPAPTTPKETAP---TTPKGTAPTTLKEPAPTTPKKPAPKELA 734
Cdd:PRK14954 395 PEPDLPQPDRHPGPAKPEAPGARPAELPSPasaPTPEQQPPVARSAPLPPSPQASAPRNVA 455
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
687-922 |
7.35e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.92 E-value: 7.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 687 EPAPTTPKEPAPTTPKETAPTtPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPA 766
Cdd:PHA03307 52 AVTVVAGAAACDRFEPPTGPP-PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 767 PTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPKKPAPTT 846
Cdd:PHA03307 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS 210
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370451476 847 PETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGVPTTKTPAATKPEMTTTAKDKTTER 922
Cdd:PHA03307 211 SPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286
|
|
| SAV_2336_NTERM |
NF041121 |
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
373-440 |
7.94e-03 |
|
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.
Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.37 E-value: 7.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 373 SAPTTPKEPAPTTTkSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTP 440
Cdd:NF041121 19 AAPPSPEGPAPTAA-SQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAP 85
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
748-843 |
7.97e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.47 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 748 KPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGT----APTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTP 823
Cdd:PRK14951 378 KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAsapaAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAP 457
|
90 100
....*....|....*....|
gi 1370451476 824 KETAPTTPKEPAPTTPKKPA 843
Cdd:PRK14951 458 ETVAIPVRVAPEPAVASAAP 477
|
|
| DamX |
COG3266 |
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
394-521 |
8.00e-03 |
|
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 40.60 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 394 KEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepapttkE 473
Cdd:COG3266 256 KAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAA------------------------A 311
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1370451476 474 PAPTTPKEPAPTA--PKKPAPTTPKEPAP-TTPKEPAPTTTKEPSPTTPKE 521
Cdd:COG3266 312 AAPAEAAAPQPTAakPVVTETAAPAAPAPeAAAAAAAPAAPAVAKKLAADE 362
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
552-647 |
8.38e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.64 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 552 PSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAPTTPkepaptttkkpapttpKEPAPTTPKETAPTTPKKLTPTTPEK 631
Cdd:PRK12270 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP----------------AAAAPAAPPKPAAAAAAAAAPAAPPA 101
|
90
....*....|....*.
gi 1370451476 632 LAPTTPEKPAPTTPEE 647
Cdd:PRK12270 102 AAAAAAPAAAAVEDEV 117
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
679-855 |
9.00e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 679 EPAPTTPKEPAPTTPKEPAPTTPKETA-PTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGT 757
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGArAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 758 APTTPKEPAPTTPKEPAPTTPKGTAPttlkEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPT 837
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCD----ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514
|
170
....*....|....*...
gi 1370451476 838 TPKKPAPTTPETPPPTTS 855
Cdd:PRK07003 515 AASREDAPAAAAPPAPEA 532
|
|
| PRK04654 |
PRK04654 |
sec-independent translocase; Provisional |
481-576 |
9.03e-03 |
|
sec-independent translocase; Provisional
Pssm-ID: 135173 [Multi-domain] Cd Length: 214 Bit Score: 39.41 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 481 EPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAptttksaptttkePAPTTTKSAPTTPKEPSPTTTKEP 560
Cdd:PRK04654 132 EPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPA-------------PHAAHLPSAPATPVSVAPVDAGTS 198
|
90
....*....|....*.
gi 1370451476 561 APTTPKEPAPTTPKKP 576
Cdd:PRK04654 199 ASPTPSEPTKIQEKQP 214
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
499-636 |
9.18e-03 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 39.92 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 499 APTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEP-----APTTPKEPAPTTP 573
Cdd:PRK10905 104 ALTQPQNQQQLNNVAVNSTLPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPkkpqaTAKTEPKPVAQTP 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370451476 574 KKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETAPTTPKKLTPTTPEKLAPTT 636
Cdd:PRK10905 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSS 246
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
423-518 |
9.21e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.26 E-value: 9.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 423 TTTKSAPTTPKEPAPTTPKKPAPTTPkepapttpkeptpttpkepapttkePAPTTPKEPAPTAPKKPAPTTPKEPAPTT 502
Cdd:TIGR00601 77 PKTGTGKVAPPAATPTSAPTPTPSPP-------------------------ASPASGMSAAPASAVEEKSPSEESATATA 131
|
90
....*....|....*.
gi 1370451476 503 PKEPAPTTTKEPSPTT 518
Cdd:TIGR00601 132 PESPSTSVPSSGSDAA 147
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
476-874 |
9.42e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 40.52 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 476 PTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPT-----TTKSAPTTPK 550
Cdd:pfam03154 180 AASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSphpplQPMTQPPPPS 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 551 EPSPTTTKEPAPTTPKEPAPTtPKKPAPTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPAPTTPKETapttpkkltpttpE 630
Cdd:pfam03154 260 QVSPQPLPQPSLHGQMPPMPH-SLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQR-------------I 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 631 KLAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTT-- 708
Cdd:pfam03154 326 HTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSLSth 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 709 -PKGTAPTTLKEPAPTTPKKPAPKEL-APTTTKEPTSTTSDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTL 786
Cdd:pfam03154 406 hPPSAHPPPLQLMPQSQQLPPPPAQPpVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPSGPPTST 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 787 kepAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTTPKETAPTTPKEPAPTTPkkpaptTPETPPPTTSEVSTPTTTKEP 866
Cdd:pfam03154 486 ---SSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPP------PPRSPSPEPTVVNTPSHASQS 556
|
....*...
gi 1370451476 867 TTIHKSPD 874
Cdd:pfam03154 557 ARFYKHLD 564
|
|
| PTZ00144 |
PTZ00144 |
dihydrolipoamide succinyltransferase; Provisional |
378-435 |
9.54e-03 |
|
dihydrolipoamide succinyltransferase; Provisional
Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 40.05 E-value: 9.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1370451476 378 PKEPAPTTTKSAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEP 435
Cdd:PTZ00144 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
705-838 |
9.61e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.47 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 705 APTTPKGTAPTTLKEPAPTTP-KKPAPKELAPTTTKEPtsttsdkPAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAP 783
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPaAAPVAQAAAAPAPAAA-------PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1370451476 784 TTLKEPAPTTPKKPAPKELAptttkgPTSTTSDKPAPTTPKETAPTTPKEPAPTT 838
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVA------IPVRVAPEPAVASAAPAPAAAPAAARLTP 490
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
691-779 |
9.87e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 39.62 E-value: 9.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370451476 691 TTPKEPAPTTPKETAPTTPKGTAPTTlkepaptTPKKPAPKELAPTTTKEPTSTTSDKPAPTTPKGTAPTTPKepAPTTP 770
Cdd:PRK13042 23 TTTQAANATTPSSTKVEAPQSTPPST-------KVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQ--SPTTK 93
|
....*....
gi 1370451476 771 KEPAPTTPK 779
Cdd:PRK13042 94 QVPTEINPK 102
|
|
| |
