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Conserved domains on  [gi|1488398925|ref|XP_026579937|]
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aminoacyl tRNA synthase complex-interacting multifunctional protein 2-like isoform X1 [Pseudonaja textilis]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
136-227 1.16e-53

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


:

Pssm-ID: 436585  Cd Length: 93  Bit Score: 170.96  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 136 GALKDIVINANPTFPPLSLLILHSMLCEKYKILSTVHTHSSVKNVPEKLLKCFGEQAKKQSRHEYQLGVTLIWKDVPK-P 214
Cdd:pfam18569   1 GALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLLKCFGENTSKDSRNDYQIGITLIWKDVPKgP 80
                          90
                  ....*....|...
gi 1488398925 215 QMKFSIQTMCPIE 227
Cdd:pfam18569  81 EMVVSPTSQCPIE 93
GST_C_AIMP2 cd03200
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
233-327 8.19e-50

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease.


:

Pssm-ID: 198309 [Multi-domain]  Cd Length: 96  Bit Score: 161.53  E-value: 8.19e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 233 ARFLFSLLG-AKHNTVAATLIDSWVDTALFQLQGGSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTE 311
Cdd:cd03200     1 ARFLFRLLGdESDDPVNATLIDSWVDTAIFQLLEGSSKEKAAVLRALNSALGRSPWLVGSEPTVADIALWSAVLQTGLAS 80
                          90
                  ....*....|....*.
gi 1488398925 312 AVPANVQKWLRSCENL 327
Cdd:cd03200    81 GAPANVQRWMKSCENL 96
AIMP2_LysRS_bd super family cl25106
AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain ...
11-66 3.02e-13

AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain of aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (AIMP2).


The actual alignment was detected with superfamily member pfam16780:

Pssm-ID: 465269  Cd Length: 47  Bit Score: 63.31  E-value: 3.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925  11 MPMYKVRPFQDGSGPAVLaeHLPTCMYRVRCAHRPaevngDSGLASspPPPQQDEV 66
Cdd:pfam16780   1 MPMYQVKPYHGGSGSLCV--ELPTCMYRLPNVHGR-----NSSSAE--PALQAGEV 47
 
Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
136-227 1.16e-53

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


Pssm-ID: 436585  Cd Length: 93  Bit Score: 170.96  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 136 GALKDIVINANPTFPPLSLLILHSMLCEKYKILSTVHTHSSVKNVPEKLLKCFGEQAKKQSRHEYQLGVTLIWKDVPK-P 214
Cdd:pfam18569   1 GALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLLKCFGENTSKDSRNDYQIGITLIWKDVPKgP 80
                          90
                  ....*....|...
gi 1488398925 215 QMKFSIQTMCPIE 227
Cdd:pfam18569  81 EMVVSPTSQCPIE 93
GST_C_AIMP2 cd03200
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
233-327 8.19e-50

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease.


Pssm-ID: 198309 [Multi-domain]  Cd Length: 96  Bit Score: 161.53  E-value: 8.19e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 233 ARFLFSLLG-AKHNTVAATLIDSWVDTALFQLQGGSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTE 311
Cdd:cd03200     1 ARFLFRLLGdESDDPVNATLIDSWVDTAIFQLLEGSSKEKAAVLRALNSALGRSPWLVGSEPTVADIALWSAVLQTGLAS 80
                          90
                  ....*....|....*.
gi 1488398925 312 AVPANVQKWLRSCENL 327
Cdd:cd03200    81 GAPANVQRWMKSCENL 96
AIMP2_LysRS_bd pfam16780
AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain ...
11-66 3.02e-13

AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain of aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (AIMP2).


Pssm-ID: 465269  Cd Length: 47  Bit Score: 63.31  E-value: 3.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925  11 MPMYKVRPFQDGSGPAVLaeHLPTCMYRVRCAHRPaevngDSGLASspPPPQQDEV 66
Cdd:pfam16780   1 MPMYQVKPYHGGSGSLCV--ELPTCMYRLPNVHGR-----NSSSAE--PALQAGEV 47
PLN02907 PLN02907
glutamate-tRNA ligase
212-324 4.39e-05

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 45.10  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 212 PKPQMKFSIQTmcPIEGEGNIARF------LFSLLGakHNTVAATLIDSWVDTALfQLQGGSNKEKAAVlrGMNATLGKT 285
Cdd:PLN02907   37 SAPTLLFSSGE--KLTGTNVLLRYiarsasLPGFYG--QDAFESSQVDEWLDYAP-TFSSGSEFENACE--YVDGYLASR 109
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1488398925 286 SWLVGNELTVADVVTWCALQQAG-------GTEAVPaNVQKWLRSC 324
Cdd:PLN02907  110 TFLVGYSLTIADIAIWSGLAGSGqrweslrKSKKYQ-NLVRWFNSI 154
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
272-334 1.71e-04

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 42.19  E-value: 1.71e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925 272 AAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTE---AVPANVQKWLRSCENLAPFNAAL 334
Cdd:COG0625   132 ARLLAVLEARLAGGPYLAGDRFSIADIALAPVLRRLDRLGldlADYPNLAAWLARLAARPAFQRAL 197
GST_C pfam00043
Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety ...
269-327 1.94e-03

Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes.


Pssm-ID: 459647 [Multi-domain]  Cd Length: 93  Bit Score: 36.88  E-value: 1.94e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488398925 269 KEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAG------GTEAVPaNVQKWLRSCENL 327
Cdd:pfam00043  29 EKVARVLSALEEVLKGQTYLVGDKLTLADIALAPALLWLYeldpacLREKFP-NLKAWFERVAAR 92
 
Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
136-227 1.16e-53

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


Pssm-ID: 436585  Cd Length: 93  Bit Score: 170.96  E-value: 1.16e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 136 GALKDIVINANPTFPPLSLLILHSMLCEKYKILSTVHTHSSVKNVPEKLLKCFGEQAKKQSRHEYQLGVTLIWKDVPK-P 214
Cdd:pfam18569   1 GALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLLKCFGENTSKDSRNDYQIGITLIWKDVPKgP 80
                          90
                  ....*....|...
gi 1488398925 215 QMKFSIQTMCPIE 227
Cdd:pfam18569  81 EMVVSPTSQCPIE 93
GST_C_AIMP2 cd03200
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
233-327 8.19e-50

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease.


Pssm-ID: 198309 [Multi-domain]  Cd Length: 96  Bit Score: 161.53  E-value: 8.19e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 233 ARFLFSLLG-AKHNTVAATLIDSWVDTALFQLQGGSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTE 311
Cdd:cd03200     1 ARFLFRLLGdESDDPVNATLIDSWVDTAIFQLLEGSSKEKAAVLRALNSALGRSPWLVGSEPTVADIALWSAVLQTGLAS 80
                          90
                  ....*....|....*.
gi 1488398925 312 AVPANVQKWLRSCENL 327
Cdd:cd03200    81 GAPANVQRWMKSCENL 96
AIMP2_LysRS_bd pfam16780
AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain ...
11-66 3.02e-13

AIMP2 lysyl-tRNA synthetase binding domain; This is the lysyl-tRNA synthetase binding domain of aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (AIMP2).


Pssm-ID: 465269  Cd Length: 47  Bit Score: 63.31  E-value: 3.02e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925  11 MPMYKVRPFQDGSGPAVLaeHLPTCMYRVRCAHRPaevngDSGLASspPPPQQDEV 66
Cdd:pfam16780   1 MPMYQVKPYHGGSGSLCV--ELPTCMYRLPNVHGR-----NSSSAE--PALQAGEV 47
GST_C_AaRS_like cd10289
Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA ...
249-327 7.84e-10

Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of some eukaryotic AaRSs, as well as similar domains found in proteins involved in protein synthesis including Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 (AIMP2), AIMP3, and eukaryotic translation Elongation Factor 1 beta (eEF1b). AaRSs comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. AaRSs in this subfamily include GluRS from lower eukaryotes, as well as GluProRS, MetRS, and CysRS from higher eukaryotes. AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex found in higher eukaryotes. The GST_C-like domain is involved in protein-protein interactions, mediating the formation of aaRS complexes such as the MetRS-Arc1p-GluRS ternary complex in lower eukaryotes and the multi-aaRS complex in higher eukaryotes, that act as molecular hubs for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198322 [Multi-domain]  Cd Length: 82  Bit Score: 54.63  E-value: 7.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 249 ATLIDSWVDTALFQLqggSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTEAV-----PANVQKWLRS 323
Cdd:cd10289     2 AAQVDQWLDLAGSLL---KGKELEALLKSLNSYLASRTFLVGYSLTLADVAVFSALYPSGQKLSDkekkkFPHVTRWFNH 78

                  ....
gi 1488398925 324 CENL 327
Cdd:cd10289    79 IQNL 82
GST_C_GluProRS_N cd10309
Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional ...
249-320 2.05e-07

Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional Glutamyl-Prolyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluProRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluProRS may be involved in protein-protein interactions, mediating the formation of the multi-aaRS complex in higher eukaryotes. The multi-aaRS complex acts as a molecular hub for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198342 [Multi-domain]  Cd Length: 81  Bit Score: 48.08  E-value: 2.05e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488398925 249 ATLIDSWVDTALFQLQGGSNKEKAavLRGMNATLGKTSWLVGNELTVADVVTWCALQQAG---GTEAVPANVQKW 320
Cdd:cd10309     2 QTEVDHWISFSAGRLSCDQDFSSA--LSYLDKALSLRTYLVGNSLTLADFAVWAALRGNGewlASKEKYVNVTRW 74
GST_C_GTT1_like cd03189
C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases; Glutathione ...
263-326 6.57e-06

C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.


Pssm-ID: 198298 [Multi-domain]  Cd Length: 123  Bit Score: 44.60  E-value: 6.57e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1488398925 263 LQGGSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTW----CALQQAGGTEAVPaNVQKWLRSCEN 326
Cdd:cd03189    55 LQAFINPELKRHLDFLEDHLAKHPYFAGDELTAADIMMSfpleAALARGPLLEQYP-NIAAYLERIEA 121
GST_C_AIMP3 cd10305
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
251-305 1.95e-05

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 3; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 3 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP3, also called p18 or eukaryotic translation elongation factor 1 epsilon-1 (EEF1E1), contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It specifically interacts with methionyl-tRNA synthetase (MetRS) and is translocated to the nucleus during DNA synthesis or in response to DNA damage and oncogenic stress. In the nucleus, it interacts with ATM and ATR, which are upstream kinase regulators of p53. It appears to work against DNA damage in cooperation with AIMP2, and similar to AIMP2, AIMP3 is also a haploinsufficient tumor suppressor. AIMP3 transgenic mice have shorter lifespans than wild-type mice and they show characteristics of progeria, suggesting that AIMP3 may also be involved in cellular and organismal aging.


Pssm-ID: 198338 [Multi-domain]  Cd Length: 101  Bit Score: 43.05  E-value: 1.95e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925 251 LIDSWVDTALFQLQGGSNKEKA-AVLRGMNATLGKTSWLVGNELTVADVVTWCALQ 305
Cdd:cd10305     6 QVDQWLEYRVTQVAPASDKADAkSLLKELNSYLQDRTYLVGHKLTLADVVLYYGLH 61
PLN02907 PLN02907
glutamate-tRNA ligase
212-324 4.39e-05

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 45.10  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 212 PKPQMKFSIQTmcPIEGEGNIARF------LFSLLGakHNTVAATLIDSWVDTALfQLQGGSNKEKAAVlrGMNATLGKT 285
Cdd:PLN02907   37 SAPTLLFSSGE--KLTGTNVLLRYiarsasLPGFYG--QDAFESSQVDEWLDYAP-TFSSGSEFENACE--YVDGYLASR 109
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1488398925 286 SWLVGNELTVADVVTWCALQQAG-------GTEAVPaNVQKWLRSC 324
Cdd:PLN02907  110 TFLVGYSLTIADIAIWSGLAGSGqrweslrKSKKYQ-NLVRWFNSI 154
GST_C_GluRS_N cd10306
Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; ...
252-327 1.64e-04

Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, Glutamyl-tRNA synthetase (GluRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluRS from lower eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluRS is involved in protein-protein interactions. This domain mediates the formation of the MetRS-Arc1p-GluRS ternary complex found in lower eukaryotes, which is considered an evolutionary intermediate between prokaryotic aaRS and the multi-aaRS complex found in higher eukaryotes. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198339 [Multi-domain]  Cd Length: 87  Bit Score: 40.03  E-value: 1.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 252 IDSWVDTALFQLQGGSNKEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQ---QAGGT--EAVPANVQKWLRSCEN 326
Cdd:cd10306     7 VAEWIDFATTLLVLKDFKALSQALEELDSHLTLRTFIVGYSLSLADIAVWGALRgngVAGSLikNKVYVNLSRWFSFLES 86

                  .
gi 1488398925 327 L 327
Cdd:cd10306    87 L 87
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
272-334 1.71e-04

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 42.19  E-value: 1.71e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925 272 AAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTE---AVPANVQKWLRSCENLAPFNAAL 334
Cdd:COG0625   132 ARLLAVLEARLAGGPYLAGDRFSIADIALAPVLRRLDRLGldlADYPNLAAWLARLAARPAFQRAL 197
GST_C_8 cd03207
C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; ...
272-325 7.48e-04

C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 8; composed of Agrobacterium tumefaciens GST and other uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The three-dimensional structure of Agrobacterium tumefaciens GST has been determined but there is no information on its functional characterization.


Pssm-ID: 198316 [Multi-domain]  Cd Length: 101  Bit Score: 38.43  E-value: 7.48e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1488398925 272 AAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAGGTEAVPA--NVQKWLRSCE 325
Cdd:cd03207    42 DERLAALEAALAGRPYLVGERFSAADLLLASVLRWARAFGLLPEypALRAYVARCT 97
GST_C pfam00043
Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety ...
269-327 1.94e-03

Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes.


Pssm-ID: 459647 [Multi-domain]  Cd Length: 93  Bit Score: 36.88  E-value: 1.94e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1488398925 269 KEKAAVLRGMNATLGKTSWLVGNELTVADVVTWCALQQAG------GTEAVPaNVQKWLRSCENL 327
Cdd:pfam00043  29 EKVARVLSALEEVLKGQTYLVGDKLTLADIALAPALLWLYeldpacLREKFP-NLKAWFERVAAR 92
GST_C_Delta_Epsilon cd03177
C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; ...
278-333 2.61e-03

C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.


Pssm-ID: 198287 [Multi-domain]  Cd Length: 117  Bit Score: 37.13  E-value: 2.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1488398925 278 MNATLGKTSWLVGNELTVADVvtwCALQQAGGTEAVP------ANVQKWLRSCENLAPFNAA 333
Cdd:cd03177    50 LETFLEGSDYVAGDQLTIADL---SLVATVSTLEVVGfdlskyPNVAAWYERLKALPPGEEE 108
GST_C_7 cd03206
C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases; ...
232-330 7.16e-03

C-terminal, alpha helical domain of an unknown subfamily 7 of Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.


Pssm-ID: 198315 [Multi-domain]  Cd Length: 100  Bit Score: 35.66  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1488398925 232 IARFLFsllgakhntVAATLIDSWVDTA-LFQLQG-GSNKEKA-----AVLRGMNATLGKTSWLVGNELTVADVV--TWC 302
Cdd:cd03206     1 VQRWLS---------FAAGEIAHGPAAArLIHLFGaPLDPERAraishRLLRLLDQHLAGRDWLAGDRPTIADVAcyPYI 71
                          90       100
                  ....*....|....*....|....*....
gi 1488398925 303 ALQQAGGTEAVP-ANVQKWLRSCENLAPF 330
Cdd:cd03206    72 ALAPEGGVSLEPyPAIRAWLARVEALPGF 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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