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Conserved domains on  [gi|1591507900|ref|XP_028284456|]
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39S ribosomal protein L34, mitochondrial [Parambassis ranga]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
79-120 4.79e-12

Ribosomal protein L34;


:

Pssm-ID: 425699  Cd Length: 42  Bit Score: 55.86  E-value: 4.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1591507900  79 GTEYQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
79-120 4.79e-12

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 55.86  E-value: 4.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1591507900  79 GTEYQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 82-120 3.23e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 48.94  E-value: 3.23e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1591507900  82 YQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:COG0230     5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 82-120 2.34e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 39.03  E-value: 2.34e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1591507900  82 YQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:TIGR01030   5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
79-120 4.79e-12

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 55.86  E-value: 4.79e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1591507900  79 GTEYQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 82-120 3.23e-09

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 48.94  E-value: 3.23e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1591507900  82 YQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:COG0230     5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 82-120 2.34e-05

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 39.03  E-value: 2.34e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1591507900  82 YQPKNIKRKRTHGWIKRLSSQSGIEVILRRMLKGRQSLS 120
Cdd:TIGR01030   5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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