|
Name |
Accession |
Description |
Interval |
E-value |
| ATAD3_N |
pfam12037 |
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal ... |
35-280 |
8.61e-137 |
|
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal domain of ATPase family AAA domain-containing protein 3 (ATAD3) which is involved in dimerization and interacts with the inner surface of the outer mitochondrial membrane. This domain is found associated with the AAA ATPase domain (pfam00004). ATAD3 is essential for mitochondrial network organization, mitochondrial metabolism and cell growth at organizm and cellular level. It may also play an important role in mitochondrial protein synthesis.
Pssm-ID: 463442 [Multi-domain] Cd Length: 264 Bit Score: 413.61 E-value: 8.61e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 35 DKPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLN 114
Cdd:pfam12037 14 DKPRTAYSGFDPEALERAAKAARELESSPHAKKALELMKKQEQTRQAELQAKIKEYEAAQEQLKIERQRVEYEERRKTLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 115 EETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-----KATIEHEMELRHKNELLRIEAESKA 189
Cdd:pfam12037 94 EETKQKQQRAQYQDELARKRYQDQLEAQRRRNEELLRKQEESVAKQEAMRiqaqrRQTEEHEAELRRETERAKAEAEAEA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 190 RARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYI 269
Cdd:pfam12037 174 RAKEERENEDLNLEQLREKANEERETVLESINTAGSHIGGGLRALLTDWDKLVAAVGGLTALAAGVYTAKEGTGVAWRYI 253
|
250
....*....|.
gi 1712965687 270 EARLGKPSLVR 280
Cdd:pfam12037 254 EARLGKPSLVR 264
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
318-467 |
4.34e-107 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 330.64 E-value: 4.34e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSR 397
Cdd:cd19512 1 LEARVRDIAIATRNTKKNKGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAIHKVFDWANTSR 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 398 RGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:cd19512 81 RGLLLFVDEADAFLRKRSTEKISEDLRAALNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEMVEF 150
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
318-467 |
1.40e-37 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 138.18 E-value: 1.40e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTS 396
Cdd:cd19481 5 LREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVgESEKNLRKIFERARRL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 397 RRGLLLFvDEADAFLRKRSTEKISEDLRATLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAIND--RIDEIVNF 467
Cdd:cd19481 85 APCILFI-DEIDAIGRKRDSSGESGELRRVLNQLLTELdgVNSRSKVLVIAATNRPDLLDPALLRpgRFDEVIEF 158
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
309-563 |
1.24e-29 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 118.45 E-value: 1.24e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 309 LEGVVLSPTLEERVRDVaiaTRNTRQNNGLY-------RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR- 380
Cdd:COG1223 1 LDDVVGQEEAKKKLKLI---IKELRRRENLRkfglwppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSL--IGSy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 381 --DGVTAMHKVFDWANtsRRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAIN 458
Cdd:COG1223 76 lgETARNLRKLFDFAR--RAPCVIFFDEFDAIAKDRGDQNDVGEVKRVVNALLQELDGLPSGSVVIAATNHPELLDSALW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 459 DRIDEIVNFALPGPDERDRLVRLYFDKYVLEpatggrqrmklaqFDYIAKcsEIAKRTEGMSGREISKLGVAWQAAAYSS 538
Cdd:COG1223 154 RRFDEVIEFPLPDKEERKEILELNLKKFPLP-------------FELDLK--KLAKKLEGLSGADIEKVLKTALKKAILE 218
|
250 260
....*....|....*....|....*
gi 1712965687 539 EDGVLTEAMIDArvddAVKQHRQKM 563
Cdd:COG1223 219 DREKVTKEDLEE----ALKQRKERK 239
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
154-558 |
1.58e-28 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 119.25 E-value: 1.58e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 154 EESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRA 233
Cdd:COG0464 4 LLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 234 FVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEARLGKPSLVRETSRFTVGEAIKHPVKTVKRLKSkpqDALEGVV 313
Cdd:COG0464 84 ALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELRE---AILDDLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 314 LSPTLEERVRDVAIATRN---TRQNNGLY--RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGRD-GVTA-- 385
Cdd:COG0464 161 GLEEVKEELRELVALPLKrpeLREEYGLPppRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDL--VSKYvGETEkn 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 386 MHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKiSEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIV 465
Cdd:COG0464 239 LREVFDKARGLAPCVLFI-DEADALAGKRGEVG-DGVGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEII 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 466 NFALPGPDERDRLVRLYFDKYVLEPAtggrqrmklaqfdyiAKCSEIAKRTEGMSGREISKLGV-AWQAAAYSSEDGVLT 544
Cdd:COG0464 317 FFPLPDAEERLEIFRIHLRKRPLDED---------------VDLEELAEATEGLSGADIRNVVRrAALQALRLGREPVTT 381
|
410
....*....|....*.
gi 1712965687 545 EAMIDA--RVDDAVKQ 558
Cdd:COG0464 382 EDLLEAleREDIFLKR 397
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
342-467 |
5.08e-22 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 92.66 E-value: 5.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEKIS 420
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVgESEKRLRELFEAAKKLAPC-VIFIDEIDALAGSRGSGGDS 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 421 EDLRaTLNAFLYRT-GEQSN--KFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:pfam00004 80 ESRR-VVNQLLTELdGFTSSnsKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
342-564 |
5.23e-21 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 95.46 E-value: 5.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKI 419
Cdd:COG1222 115 VLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSKyiG-EGARNVREVFELAREKAPSIIFI-DEIDAIAARRTDDGT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 420 SEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYfdkyvlepatggR 495
Cdd:COG1222 193 SGEVQRTVNQLLAELdGFESRGDVLIIaATNRPDLLDPALlrPGRFDRVIEVPLPDEEAREEILKIH------------L 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 496 QRMKLA-QFDYiakcSEIAKRTEGMSGREISKlgVAWQAAAYSSEDGVLTEAMIDarVDDAVKQHRQKMD 564
Cdd:COG1222 261 RDMPLAdDVDL----DKLAKLTEGFSGADLKA--IVTEAGMFAIREGRDTVTMED--LEKAIEKVKKKTE 322
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
848-1028 |
2.49e-17 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 87.79 E-value: 2.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 848 PVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 923
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 924 EVTPP-PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV-TPPPSAEAPLAED 1001
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVeTVTAVEPEVAPAQ 1005
|
170 180
....*....|....*....|....*....
gi 1712965687 1002 VAAPVVE--VTPPPSVEAPLAEDVAAPVV 1028
Cdd:PRK10811 1006 VPEATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
808-992 |
8.42e-17 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 85.86 E-value: 8.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 808 PVVEVTPPPSEE-----AVAAAPLVQDVIAPVVeVTPPPSEEAAAPVAEDVIAPVVEVTP--PLAVEVEAPLAEDVAAPV 880
Cdd:PRK10811 846 PVVRPQDVQVEEqreaeEVQVQPVVAEVPVAAA-VEPVVSAPVVEAVAEVVEEPVVVAEPqpEEVVVVETTHPEVIAAPV 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 881 VEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 960
Cdd:PRK10811 925 TE---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965687 961 AAPVVEVTPPPS---AEAPLAEdvaAPVVEVTPPP 992
Cdd:PRK10811 1001 VAPAQVPEATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
825-1015 |
1.36e-15 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 82.01 E-value: 1.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 825 PLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPlaEDVAAPVVEVTPPPSAEAPLA----EDVAAP 900
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVA--EVVEEPVVVAEPQPEEVVVVEtthpEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 901 VVEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAaPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaed 980
Cdd:PRK10811 924 VTE---QPQVITESDVAVAQEVAEHAEPVVEPQDETADIE-EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT---- 995
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1712965687 981 VAAPVVEvtPPPSAEAPLAEDVA------APVVEVTPPPSV 1015
Cdd:PRK10811 996 AVEPEVA--PAQVPEATVEHNHAtapmtrAPAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
858-1033 |
1.44e-15 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 82.01 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 858 VEVTPPLAVEVEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA- 936
Cdd:PRK10811 841 VWIRYPVVRPQDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEt 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 937 ---EDVAAPVVEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 1013
Cdd:PRK10811 915 thpEVIAAPVTE---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990
|
170 180
....*....|....*....|
gi 1712965687 1014 SVEAPLAEDVAAPVVEVTPP 1033
Cdd:PRK10811 991 VETVTAVEPEVAPAQVPEAT 1010
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
807-1037 |
1.05e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 79.31 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 807 APVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVE--------------------------- 859
Cdd:PRK10811 734 SVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNAEnrdnngmprrsrrsprhlrvsgqrrrr 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 860 --------VTP-PLAVEVEAPlaeDVAAPVVEVTPP--PSAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPP 928
Cdd:PRK10811 814 yrderyptQSPmPLTVACASP---EMASGKVWIRYPvvRPQDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVS 884
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 929 PSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVA 1003
Cdd:PRK10811 885 APVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVTEQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAE 964
|
250 260 270
....*....|....*....|....*....|....
gi 1712965687 1004 APVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAE 1037
Cdd:PRK10811 965 TAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVE 998
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
782-965 |
4.63e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 77.00 E-value: 4.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPsEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVaedVIAPVVEvT 861
Cdd:PRK10811 853 VQVEEQREAE-EVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV---IAAPVTE-Q 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 862 PPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV-TPPPSAEAPLAEDVA 940
Cdd:PRK10811 928 PQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVeTVTAVEPEVAPAQVP 1007
|
170 180
....*....|....*....|....*..
gi 1712965687 941 APVVE--VTPPPSAEAPLAEDVAAPVV 965
Cdd:PRK10811 1008 EATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
731-923 |
4.08e-13 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 73.92 E-value: 4.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 731 PVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVV 810
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 811 EVTPPPSEEAVAAAPLVQDVIAPVVEvtPPPSEEAAAPVAEdvIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAE 890
Cdd:PRK10811 926 EQPQVITESDVAVAQEVAEHAEPVVE--PQDETADIEEAAE--TAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965687 891 APlaEDVAAPVVE--VTPPPSAEAPLAEDVAAPVV 923
Cdd:PRK10811 1002 AP--AQVPEATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
758-950 |
1.09e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 72.76 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 758 PVVEVT-PPPSEEAAAAAPLVQDVIAPVVEVAP-PPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVV 835
Cdd:PRK10811 846 PVVRPQdVQVEEQREAEEVQVQPVVAEVPVAAAvEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 836 EvTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAplaedvaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 915
Cdd:PRK10811 926 E-QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-------EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAV 997
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965687 916 EDVAAPVVEVTPPPS---AEAPLAEdvaAPVVEVTPPP 950
Cdd:PRK10811 998 EPEVAPAQVPEATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
811-1086 |
2.73e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 71.22 E-value: 2.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 811 EVTPPPSEEAVAAAPLVQDVIAPV------------VEVTPPPSEEAAAPVAEDVIA--PVVEVTPPLAVEVEAPLAEDV 876
Cdd:PRK10811 693 EAKALNVEEQSVQETEQEERVQQVqprrkqrqlnqkVRIEQSVAEEAVAPVVEETVAaePVVQEVPAPRTELVKVPLPVV 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 877 AAPVVEVTPPPSAEA--------------------------------------PLAEDVAAPVVE---------VTPPps 909
Cdd:PRK10811 773 AQTAPEQDEENNAENrdnngmprrsrrsprhlrvsgqrrrryrderyptqspmPLTVACASPEMAsgkvwirypVVRP-- 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 910 AEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPV 985
Cdd:PRK10811 851 QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPV 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 986 VEVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPsaevkctlsdgldsdntVKAEPASETEHLA 1064
Cdd:PRK10811 925 TEQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPE-----------------VVAQPAAPVVAEV 987
|
330 340
....*....|....*....|..
gi 1712965687 1065 QPAASAETEAKMKKEDKTVSPP 1086
Cdd:PRK10811 988 AAEVETVTAVEPEVAPAQVPEA 1009
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
877-1006 |
5.85e-12 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 68.44 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 877 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 956
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 957 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 1006
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
898-1027 |
1.55e-11 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 67.28 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 898 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 977
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 978 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 1027
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
838-1037 |
1.57e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 68.36 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 838 TPPPSEEAaAPVAEdvIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 917
Cdd:PRK12323 372 AGPATAAA-APVAQ--PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 918 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE---APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 994
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1712965687 995 EAPLAEDVAAPVVEVTPPPSvEAPLAEDVAAPVVEVTPPPSAE 1037
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAA-PAPRAAAATEPVVAPRPPRASA 570
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
339-469 |
3.43e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.55 E-value: 3.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 339 YRNILMYGPPGTGKTLFAKKLAMHSG--------MDYAIMTGGDVapMGRDGVTAMHKVFDWANTSRRGLLLFVDEADAF 410
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFrpgapflyLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 411 lrkrsTEKISEDLRATLNAFLYRTGEQSNkFMLVLASNQPE--QFDWAINDRIDEIVNFAL 469
Cdd:cd00009 97 -----SRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPLlgDLDRALYDRLDIRIVIPL 151
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
789-1091 |
7.90e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.89 E-value: 7.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 789 PPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEV 868
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT 2691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 869 EAPLAEDVAAPVVEVTPPPSAEaplaedvaaPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVVEVTP 948
Cdd:PHA03247 2692 VGSLTSLADPPPPPPTPEPAPH---------ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP--GGPARPARP 2760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 949 P----PSAEAPLAEDVAAPVVEVTPPPSAEA-------PLAEDVAAPVVEVTPPPSAEAPlaedVAAPVVEVTPPPSVEA 1017
Cdd:PHA03247 2761 PttagPPAPAPPAAPAAGPPRRLTRPAVASLsesreslPSPWDPADPPAAVLAPAAALPP----AASPAGPLPPPTSAQP 2836
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 1018 PLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETE----HLAQPAASAETEAKMKKEDKTVSPPKDGTP 1091
Cdd:PHA03247 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARppvrRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
894-1036 |
9.29e-11 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 64.97 E-value: 9.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 894 AEDVAAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 973
Cdd:PTZ00436 205 AKKAAAPSGKKSAKAAAPAKAA---AAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 974 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 1036
Cdd:PTZ00436 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
907-1037 |
9.71e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 65.89 E-value: 9.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 907 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 986
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 987 EVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlAEDVAAPVVEVTPPPSAE 1037
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEE 493
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
782-1037 |
9.91e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 66.03 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDviapvvEVT 861
Cdd:PRK07003 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD------RGD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 862 PPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 941
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCDERDAQPP-----ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 942 PVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-----------AAPVVEVTPPPSAEAPLAEDVAAPVVEVt 1010
Cdd:PRK07003 516 ASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAV- 594
|
250 260
....*....|....*....|....*..
gi 1712965687 1011 PPPSVEAPLAEDVAAPVVEVTPPPSAE 1037
Cdd:PRK07003 595 QVPTPRARAATGDAPPNGAARAEQAAE 621
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
886-1021 |
1.09e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 65.51 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 886 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 965
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 966 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSVEAPLAE 1021
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA----AARLTPTEEGD 495
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
813-1020 |
1.14e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 65.67 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 813 TPPPSeeaVAAAPLVQDVIAPVVE--VTPPPSEEAAAPvaedviAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAE 890
Cdd:PRK12323 372 AGPAT---AAAAPVAQPAPAAAAPaaAAPAPAAPPAAP------AAAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 891 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE---APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 967
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 968 TPPPSAEAPLAEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLA 1020
Cdd:PRK12323 523 AESIPDPATADPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
788-1013 |
1.24e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 65.64 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 788 APPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVE 867
Cdd:PRK07003 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADS 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 868 VEAPL-AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 946
Cdd:PRK07003 462 RCDERdAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 947 TPPPSAEAPLAEDV----------------AAPVVEVTPPPSAEAPLAEDVAAPV---------VEVTPPPSAEAPLAED 1001
Cdd:PRK07003 542 PAARAGGAAAALDVlrnagmrvssdrgaraAAAAKPAAAPAAAPKPAAPRVAVQVptpraraatGDAPPNGAARAEQAAE 621
|
250
....*....|..
gi 1712965687 1002 VAAPvvevtPPP 1013
Cdd:PRK07003 622 SRGA-----PPP 628
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
818-985 |
1.75e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 64.20 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 818 EEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPlaVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 897
Cdd:PTZ00436 191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPP--AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 898 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvaaPVVEVTPPPSAEAPL 977
Cdd:PTZ00436 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP-------PAKAATPPAKAAAPP 341
|
....*...
gi 1712965687 978 AEDVAAPV 985
Cdd:PTZ00436 342 AKAAAAPV 349
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
639-1038 |
2.68e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 64.96 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 639 PPPSVEAAAPQAqDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVV-----------E 707
Cdd:PHA03247 2592 PPQSARPRAPVD-DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrarrL 2670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 708 VTPPPSEEAVAAAAAPLVQDVIAPVVEVT-PPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEaaaaaplvqdviAPVVE 786
Cdd:PHA03247 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHALVSATPLPPGPAAARQASP------------ALPAA 2738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 787 VAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSeeAVAAAPlvqdvIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAV 866
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAP--APPAAP-----AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 867 EVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVA--APVVEVTPPPSAEA-PLAEDVAAPV 943
Cdd:PHA03247 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP-GGDVRrrPPSRSPAAKPAAPArPPVRRLARPA 2890
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 944 VEVTPPPSAEAPLAEdvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-AAPVVE---VTPPPSVEAPL 1019
Cdd:PHA03247 2891 VSRSTESFALPPDQP--ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTdPAGAGEpsgAVPQPWLGALV 2968
|
410 420
....*....|....*....|
gi 1712965687 1020 AEDVAAPVVEVTPP-PSAEV 1038
Cdd:PHA03247 2969 PGRVAVPRFRVPQPaPSREA 2988
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
832-1023 |
3.91e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 64.10 E-value: 3.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 832 APVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAE 911
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA-ATRAEAPPAAPAPPATAD 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 912 ---------APLAEDVAAPvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVA 982
Cdd:PRK07003 438 rgddaadgdAPVPAKANAR---ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1712965687 983 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDV 1023
Cdd:PRK07003 515 AASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV 555
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
248-574 |
4.61e-10 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 63.90 E-value: 4.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 248 LTLLAVGVYSARNATGVAGRyiearlGKPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEgvvlsptLEERVRDvai 327
Cdd:PRK10733 110 LLLIGVWIFFMRQMQGGGGK------GAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAE-------LVEYLRE--- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 328 ATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRD-GVTAMHKVFDWANTSRRgLLLFVDE 406
Cdd:PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGvGASRVRDMFEQAKKAAP-CIIFIDE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 407 ADAFLRKRST--EKISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVR 480
Cdd:PRK10733 253 IDAVGRQRGAglGGGHDEREQTLNQMLVEMdGFEGNEGIIVIaATNRPDVLDPALlrPGRFDRQVVVGLPDVRGREQILK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 481 LYFDKYVLEPATggrqrmklaqfdyiaKCSEIAKRTEGMSGREISKLgvAWQAAAYSSEDGVLTEAMID---ARVDDAVK 557
Cdd:PRK10733 333 VHMRRVPLAPDI---------------DAAIIARGTPGFSGADLANL--VNEAALFAARGNKRVVSMVEfekAKDKIMMG 395
|
330
....*....|....*..
gi 1712965687 558 QHRQKMDWLHAEEEAQA 574
Cdd:PRK10733 396 AERRSMVMTEAQKESTA 412
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
340-457 |
5.26e-10 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 59.55 E-value: 5.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRdGVTAmHKVFDWANTSRRG--LLLFVDEADAFLRKRSTE 417
Cdd:cd19501 38 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV-GVGA-SRVRDLFEQAKKNapCIVFIDEIDAVGRKRGAG 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965687 418 KI-SEDLR-ATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19501 116 LGgGHDEReQTLNQLLVEMdGFESNTGVIVIaATNRPDVLDPAL 159
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
859-1036 |
6.38e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 63.36 E-value: 6.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 859 EVTPPLAVEVEAPLAEDVAAPVVEVTPPPSaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 938
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPA--APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 939 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE---APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSV 1015
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180
....*....|....*....|.
gi 1712965687 1016 EAPLAEDVAAPVVEVTPPPSA 1036
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAAP 549
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
863-998 |
7.48e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.81 E-value: 7.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 863 PLAVEVEAPLAEdvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAP 942
Cdd:PRK14951 366 PAAAAEAAAPAE--KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAA 441
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 943 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 998
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
869-1091 |
1.16e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 62.59 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 869 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTP 948
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPAPEALAAARQASARGPGGA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 949 PPSAEAPLAEDVAApvvevTPPPSAEAplaedvAAPVVEVTPPPSAEAPLAEDVAAPvveVTPPPSVEAPLAEDVAAPVV 1028
Cdd:PRK12323 448 PAPAPAPAAAPAAA-----ARPAAAGP------RPVAAAAAAAPARAAPAAAPAPAD---DDPPPWEELPPEFASPAPAQ 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 1029 EVTPPPSAEVKCTLSDGldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 1091
Cdd:PRK12323 514 PDAAPAGWVAESIPDPA-----TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
337-460 |
1.71e-09 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 57.75 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 337 GLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVA--PMGrDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19509 30 GPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVskWVG-ESEKIVRALFALAR-ELQPSIIFIDEIDSLLSER 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 415 STEKiSEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19509 108 GSGE-HEASRRVKTEFLVQmdgvLNKPEDRVLVLGATNRPWELDEAFLRR 156
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
340-470 |
5.93e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 5.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLA------------------MHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSRRGlL 401
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALArelgppgggviyidgediLEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-V 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 402 LFVDEADAFLRKRSTEKISEDLRATLNAFLyrtgEQSNKFMLVLASNQPEQFDWA-INDRIDEIVNFALP 470
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
877-1037 |
6.07e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 60.26 E-value: 6.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 877 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 956
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 957 AEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED---VAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP 1033
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKAtnpVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
|
....
gi 1712965687 1034 PSAE 1037
Cdd:PRK07994 519 EAIE 522
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
833-1004 |
7.39e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 59.88 E-value: 7.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 833 PVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEA 912
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 913 PLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTP 990
Cdd:PRK07994 439 KKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAA 514
|
170
....*....|....
gi 1712965687 991 PPSAEAPLAEDVAA 1004
Cdd:PRK07994 515 KLAAEAIERDPWAA 528
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
782-1036 |
8.23e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 59.86 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVT 861
Cdd:PRK07003 400 TAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASA 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 862 PplAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-- 939
Cdd:PRK07003 480 P--ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlr 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 940 --------------AAPVVEVTPPPSAEAPLAEDVAAPV---------VEVTPPPSAEAPLAEDV-AAPVVEVTPPPSAE 995
Cdd:PRK07003 558 nagmrvssdrgaraAAAAKPAAAPAAAPKPAAPRVAVQVptpraraatGDAPPNGAARAEQAAESrGAPPPWEDIPPDDY 637
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1712965687 996 APL--------AEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 1036
Cdd:PRK07003 638 VPLsadegfggPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPA 686
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
841-1025 |
1.44e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 58.72 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 841 PSEEAAAPVAEDVIAPVVEVTPPLAVEVEAplaedVAAPVVEVTPPPSAEAPlaedvaapvvEVTPPPSAEAPLAEDVAA 920
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAA-----VAPPQAPAVPPPPASAP----------QQAPAVPLPETTSQLLAA 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 921 PVVEVTPPPSAEAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPL 998
Cdd:PRK07994 426 RQQLQRAQGATKAKKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKA 503
|
170 180
....*....|....*....|....*..
gi 1712965687 999 AEDVAAPvvEVTPPPSVEAPLAEDVAA 1025
Cdd:PRK07994 504 LEHEKTP--ELAAKLAAEAIERDPWAA 528
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
342-457 |
2.64e-08 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 54.42 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKIS 420
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYvGESERAVRQVFQRARASAPCVIFF-DEVDALVPKRGDGGSW 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965687 421 EDLRaTLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19530 112 ASER-VVNQLLTEMdgLEERSNVFVIAATNRPDIIDPAM 149
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
808-956 |
3.50e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 57.42 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 808 PVVEVTPPPSEEAVAAAPlvqdviapvvevtPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVeaplaedVAAPVVEVTPPP 887
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPAR-------------PEAAAPAAAPVAQAAAAPAPAAAPAAAASA-------PAAPPAAAPPAP 425
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1712965687 888 SAEAPLAEDVAAP---VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 956
Cdd:PRK14951 426 VAAPAAAAPAAAPaaaPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
817-1033 |
3.54e-08 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 57.79 E-value: 3.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 817 SEEAVAAAPlvQDVIAPVVEVTPPPSEEAaapvaeDVIAPVVEVTPPLAVEVEAPLAEDV-AAPVVEVTPPPSAEAPLAe 895
Cdd:PRK10263 281 TARGVAADP--DDVLFSGNRATQPEYDEY------DPLLNGAPITEPVAVAAAATTATQSwAAPVEPVTQTPPVASVDV- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 896 DVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP------PSAEAPLAEDVAAPVVEVTP 969
Cdd:PRK10263 352 PPAQPTVAWQPVPGPQTG--EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPqqpyyaPAAEQPAQQPYYAPAPEQPA 429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 970 PPSAEAPLAEDVAAPVVEVTPPPSA----------EAPLAEDVAAPVVEVTPPPSVEAPLAEDVaaPVVEVTPP 1033
Cdd:PRK10263 430 QQPYYAPAPEQPVAGNAWQAEEQQStfapqstyqtEQTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVVEETKP 501
|
|
| RecA-like_KTNA1 |
cd19522 |
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ... |
339-463 |
3.63e-08 |
|
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410930 [Multi-domain] Cd Length: 170 Bit Score: 54.22 E-value: 3.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHK-VFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19522 33 WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRlLFEMARFYAPT-TIFIDEIDSICSRRGTS 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 418 KISEDLRATLNAFLYR--------TGEQSNKFMLVL-ASNQPEQFDWAINDRIDE 463
Cdd:cd19522 112 EEHEASRRVKSELLVQmdgvggasENDDPSKMVMVLaATNFPWDIDEALRRRLEK 166
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-271 |
3.75e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 130 LARQRYEDQLRQQQI-LNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLK 208
Cdd:COG1196 431 AELEEEEEEEEEALEeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 209 AAEHRQTVLESIKTAGAVfgegfrafVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1196 511 KAALLLAGLRGLAGAVAV--------LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
833-977 |
3.79e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 57.42 E-value: 3.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 833 PVVEVTPPPSEEAAAPvaedviapvveVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 912
Cdd:PRK14951 366 PAAAAEAAAPAEKKTP-----------ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAP 434
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 913 PLAEdvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 977
Cdd:PRK14951 435 AAAP--AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
340-457 |
3.97e-08 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 53.83 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19511 28 KGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKyvG-ESERAVREIFQKARQAAPC-IIFFDEIDSLAPRRGQS 105
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965687 418 KISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19511 106 DSSGVTDRVVSQLLTELDgiESLKGVVVIAATNRPDMIDPAL 147
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
342-525 |
4.46e-08 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 56.76 E-value: 4.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG--------GDVAPMGRDgvtamhkVFDWANtSRRGLLLFVDEADAFLRK 413
Cdd:PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfiGEGARLVRE-------LFELAR-EKAPSIIFIDEIDAIAAK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 414 RSTEKISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI-----NDRIDEIvnfalPGPDERDRLV 479
Cdd:PRK03992 240 RTDSGTSGDrevqrtlmqLLAEMDGF-----DPRGNVKIIAATNRIDILDPAIlrpgrFDRIIEV-----PLPDEEGRLE 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965687 480 rlyfdkyVLEPATggrQRMKLAQ-FDYiakcSEIAKRTEGMSGREIS 525
Cdd:PRK03992 310 -------ILKIHT---RKMNLADdVDL----EELAELTEGASGADLK 342
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-219 |
4.76e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENaDIIREQIRLKA 209
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEA 411
|
170
....*....|
gi 1712965687 210 AEHRQTVLES 219
Cdd:COG1196 412 LLERLERLEE 421
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-214 |
5.94e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEH-QSKIKEYEAAVEQLKG--DQIRIQGEERRKTLNEETKQhQARAQY 126
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLelEELELELEEAQAEEYELLAE-LARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVERENADIIREQI 205
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeAELAEAEEALLEAEAELAEAEEELE 382
|
....*....
gi 1712965687 206 RLKAAEHRQ 214
Cdd:COG1196 383 ELAEELLEA 391
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
340-467 |
6.53e-08 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 53.50 E-value: 6.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTsRRGLLLFVDEADAFLRKRSTEK 418
Cdd:cd19502 38 KGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSElVQKYIGEGARLVRELFEMARE-KAPSIIFIDEIDAIGAKRFDSG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 419 ISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNF 467
Cdd:cd19502 117 TGGDrevqrtmleLLNQLDGF-----DPRGNIKVIMATNRPDILDPALlrPGRFDRKIEF 171
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
339-463 |
6.67e-08 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 53.33 E-value: 6.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSt 416
Cdd:cd19521 40 WSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSkwMG-ESEKLVKQLFAMARENKPS-IIFIDEVDSLCGTRG- 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 417 EKISEDLRATLNAFLYR---TGEQSNKFMLVLASNQPEQFDWAINDRIDE 463
Cdd:cd19521 117 EGESEASRRIKTELLVQmngVGNDSQGVLVLGATNIPWQLDSAIRRRFEK 166
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
807-1038 |
6.85e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.92 E-value: 6.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 807 APVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPP 886
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 887 PSAEAPLAEDVAAPVVEVTPPPSAEAPlaedVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 966
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAA----PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDP 738
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1712965687 967 VTPPPsaEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSVEAPLAEDVAAPVVEVTPPPSAEV 1038
Cdd:PRK07764 739 VPLPP--EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP----SPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
780-978 |
7.88e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.42 E-value: 7.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 780 VIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTP---PPSEEAVAAAPlvQDVIAPVVEVTPPPSEEAAAPVAEdviap 856
Cdd:PRK12323 389 AAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAParrSPAPEALAAAR--QASARGPGGAPAPAPAPAAAPAAA----- 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 857 vvevTPPLAVEVEAPLAEDVAAPVvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 936
Cdd:PRK12323 462 ----ARPAAAGPRPVAAAAAAAPA----RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATAD 533
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1712965687 937 EDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 978
Cdd:PRK12323 534 PDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
1.14e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK--GDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 128 DKLARQ-------RYEDQLRQ-QQILNEENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENAD 199
Cdd:PTZ00121 1521 AKKADEakkaeeaKKADEAKKaEEKKKADELKKAEE-LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
170 180
....*....|....*....|..
gi 1712965687 200 IIREQIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
808-1021 |
1.21e-07 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 55.77 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 808 PVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVeVTPPLAVEVEAPLAEDVAAPVVeVTPPP 887
Cdd:PRK12727 63 PATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMA-LRQPVSVPRQAPAAAPVRAASI-PSPAA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 888 SAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEv 967
Cdd:PRK12727 141 QALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV----PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDD- 215
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 968 tPPPSAEAPLAEDVAAPVVevtpPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 1021
Cdd:PRK12727 216 -DGFDLDDALPQILPPAAL----PPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-223 |
1.42e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAK-------DLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQ-H 120
Cdd:COG1196 205 LERQAEKAEryrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELElE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 121 QARAQYQDKLAR--------QRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARAR 192
Cdd:COG1196 285 EAQAEEYELLAElarleqdiARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190
....*....|....*....|....*....|.
gi 1712965687 193 VERENADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-527 |
1.44e-07 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 55.68 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIlSKWVGESEKAIREIFRKARQAAPA-IIFFDEIDAIAPARGARF 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 419 ISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVnfALPGPDERDRlvrlyFDKYVLEPatgg 494
Cdd:TIGR01243 567 DTSVTDRIVNQLLTEMdGIQELSNVVVIaATNRPDILDPALlrPGRFDRLI--LVPPPDEEAR-----KEIFKIHT---- 635
|
170 180 190
....*....|....*....|....*....|...
gi 1712965687 495 rQRMKLAQfdyIAKCSEIAKRTEGMSGREISKL 527
Cdd:TIGR01243 636 -RSMPLAE---DVDLEELAEMTEGYTGADIEAV 664
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
810-983 |
1.45e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 55.64 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 810 VEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEdviAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSA 889
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS---APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 890 EAPLAEDVAAPVvevtppPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEV 967
Cdd:PRK07994 441 SEPAAASRARPV------NSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--EL 512
|
170
....*....|....*.
gi 1712965687 968 TPPPSAEAPLAEDVAA 983
Cdd:PRK07994 513 AAKLAAEAIERDPWAA 528
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
808-1034 |
1.50e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 55.86 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 808 PVVEVTPPPSEEAVAAAPLV-----------QDVIAPVVEVTPPPSEEA--AAPVAEDVIAPVVEVTPPLAVEVEAPLAE 874
Cdd:PRK10263 339 PVTQTPPVASVDVPPAQPTVawqpvpgpqtgEPVIAPAPEGYPQQSQYAqpAVQYNEPLQQPVQPQQPYYAPAAEQPAQQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 875 DVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA----------EAPLAEDVAAPVVEVTPPPSAEAPLAEDVaaPVV 944
Cdd:PRK10263 419 PYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQStfapqstyqtEQTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVV 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 945 EVTPPpsAEAPL-------------AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdVAAPVVEVTP 1011
Cdd:PRK10263 497 EETKP--ARPPLyyfeeveekrareREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP-LASGVKKATL 573
|
250 260
....*....|....*....|...
gi 1712965687 1012 PPSVEAPLAEDVAAPVVEVTPPP 1034
Cdd:PRK10263 574 ATGAAATVAAPVFSLANSGGPRP 596
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
340-461 |
1.89e-07 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 52.04 E-value: 1.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTG---GDvapmGRDGVTAmhkVFDWANTSRRGlLLFVDEADAFL 411
Cdd:cd19520 36 KGVLLYGPPGCGKTMLAKATAKEAGARFinlqvSSLTDkwyGE----SQKLVAA---VFSLASKLQPS-IIFIDEIDSFL 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 412 RKRStekiSEDLRATL---NAFL-----YRTGEQSnKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19520 108 RQRS----STDHEATAmmkAEFMslwdgLSTDGNC-RVIVMGATNRPQDLDEAILRRM 160
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-218 |
2.21e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLD--KSRHAKEALDLARMQEQSTQLE-----HQSKIKEYEAAVEQLKGDQIRIQgEERRKTLNEETKQHQ 121
Cdd:COG1196 294 LAELARLEQDIArlEERRRELEERLEELEEELAELEeeleeLEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADII 201
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170
....*....|....*..
gi 1712965687 202 REQIRLKAAEHRQTVLE 218
Cdd:COG1196 453 ELEEEEEALLELLAELL 469
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
809-1091 |
2.51e-07 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 54.93 E-value: 2.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 809 VVEVTpppseeAVAAAPL--VQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPlaedvAAPVVEVTPP 886
Cdd:PLN03209 302 VVEVI------AETTAPLtpMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEP-----PQPKAVVPRP 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 887 PSAEAPLaEDVAAPVVEVTPPPSAEAPLAEDV--AAPVVEVTPPPSAEAP--LAEDVAAPVVEVTPPPSAEAPLAEDVAA 962
Cdd:PLN03209 371 LSPYTAY-EDLKPPTSPIPTPPSSSPASSKSVdaVAKPAEPDVVPSPGSAsnVPEVEPAQVEAKKTRPLSPYARYEDLKP 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 963 PVvevTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA-------PLAEDVAAPVVEVTPPPS 1035
Cdd:PLN03209 450 PT---SPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAvyddlkpPTSPSPAAPVGKVAPSST 526
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 1036 AEVKCTLSDGLDSdntvkaePASETEHLAQPAASAETEAKMKKEDKtvsPPKDGTP 1091
Cdd:PLN03209 527 NEVVKVGNSAPPT-------ALADEQHHAQPKPRPLSPYTMYEDLK---PPTSPTP 572
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
678-843 |
2.56e-07 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 55.05 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 678 APIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAaaplvqdvIAPVVEVTPPPSEEAVAAAAAPLVqdVIA 757
Cdd:PRK10811 853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVV--------EEPVVVAEPQPEEVVVVETTHPEV--IAA 922
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 758 PVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEV 837
Cdd:PRK10811 923 PVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
|
....*.
gi 1712965687 838 TPPPSE 843
Cdd:PRK10811 1003 PAQVPE 1008
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
61-218 |
2.59e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 61 KSRHAKEALDLARMQEQSTQlEHQSKIKEYEAAVEQLKGDQ-------IRIQGEERRKTLnEETKQHQARAQYQDKLARQ 133
Cdd:pfam17380 390 KNERVRQELEAARKVKILEE-ERQRKIQQQKVEMEQIRAEQeearqreVRRLEEERAREM-ERVRLEEQERQQQVERLRQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 134 RYEDQLRQQQilneeNLRKQEESVQKQEAMRKATIEHEMELRHKnellRIEAESKARARVERENAD----IIREQIRLKA 209
Cdd:pfam17380 468 QEEERKRKKL-----ELEKEKRDRKRAEEQRRKILEKELEERKQ----AMIEEERKRKLLEKEMEErqkaIYEEERRREA 538
|
....*....
gi 1712965687 210 AEHRQTVLE 218
Cdd:pfam17380 539 EEERRKQQE 547
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
771-1092 |
2.62e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.33 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 771 AAAAPLVQDviAPVVEVAPPPSEEAVAAAPVAEDVIApvvevTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEA----- 845
Cdd:PHA03247 2514 RLAPAILPD--EPVGEPVHPRMLTWIRGLEELASDDA-----GDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAvtsra 2586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 846 ----AAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPvvevTPPPSAEAPLAEDVAAPVVEVTPPP----SAEAP---- 913
Cdd:PHA03247 2587 rrpdAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHPPPTVPPPerprDDPAPgrvs 2662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 914 ---LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 990
Cdd:PHA03247 2663 rprRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 991 PPSAEAPlaedvAAPVVEVTP--PPSVEAPLAEdvAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAePASETEHLAQPAA 1068
Cdd:PHA03247 2742 PAVPAGP-----ATPGGPARParPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPS-PWDPADPPAAVLA 2813
|
330 340
....*....|....*....|....
gi 1712965687 1069 SAETEAKMKKEDKTVSPPKDGTPV 1092
Cdd:PHA03247 2814 PAAALPPAASPAGPLPPPTSAQPT 2837
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
342-527 |
3.36e-07 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 54.29 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTA--MHKVFDWANtSRRGLLLFVDEADAFLRKRSTE-K 418
Cdd:CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGVGAarVRDLFKKAK-ENSPCIVFIDEIDAVGRQRGAGiG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 419 ISEDLR-ATLNAFL-YRTGEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYFDKYVLEPATG 493
Cdd:CHL00176 297 GGNDEReQTLNQLLtEMDGFKGNKGVIVIaATNRVDILDAALlrPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVS 376
|
170 180 190
....*....|....*....|....*....|....
gi 1712965687 494 GRQrmklaqfdyiakcseIAKRTEGMSGREISKL 527
Cdd:CHL00176 377 LEL---------------IARRTPGFSGADLANL 395
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
3.91e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVE--------QLKGDQIRIQGEERRKTlnEETKQHQA 122
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEakkkaeedKKKADELKKAAAAKKKA--DEAKKKAE 1428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 123 RAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATiehemELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-----EAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
170
....*....|....
gi 1712965687 203 --EQIRLKAAEHRQ 214
Cdd:PTZ00121 1504 kaAEAKKKADEAKK 1517
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
52-214 |
4.75e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 52 AAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQskIKEYEAAVEQLKGDQIRIQGE--ERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEER--LEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKA 209
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
....*
gi 1712965687 210 AEHRQ 214
Cdd:COG1196 443 ALEEA 447
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
340-483 |
6.71e-07 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 52.84 E-value: 6.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRK----- 413
Cdd:PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEfVQKYLGEGPRMVRDVFRLARENAPS-IIFIDEVDSIATKrfdaq 258
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 414 ----RSTEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDERDRlvRLYF 483
Cdd:PTZ00454 259 tgadREVQRILLELLNQMDGF-----DQTTNVKVIMATNRADTLDPALlrPGRLDRKIEF--PLPDRRQK--RLIF 325
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-221 |
7.08e-07 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 52.61 E-value: 7.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKsrhAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQiriqgEERRKTLNEETKQHQAR--AQY 126
Cdd:pfam13868 122 LEKQRQLREEIDE---FNEEQAEWKELEKEEEREEDERILEYLKEKAEREEER-----EAEREEIEEEKEREIARlrAQQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 QDKLARQRYEDQLRQQQILnEENLRKQEEsVQKQEAMRKATIEHEM------ELRHKNELLRIEA--ESKARARVERENA 198
Cdd:pfam13868 194 EKAQDEKAERDELRAKLYQ-EEQERKERQ-KEREEAEKKARQRQELqqareeQIELKERRLAEEAerEEEEFERMLRKQA 271
|
170 180
....*....|....*....|....*....
gi 1712965687 199 DIIR------EQIRLKAAEHRQTVLESIK 221
Cdd:pfam13868 272 EDEEieqeeaEKRRMKRLEHRRELEKQIE 300
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-223 |
7.31e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 7.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYE---AAVEQLKGDQIRiQGEERRKTLNEETKQHQARAQY 126
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkAAEAKKKADEAK-KAEEAKKADEAKKAEEAKKADE 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 QDKLARQRYEDQLRQQqilneENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIE------------------AESK 188
Cdd:PTZ00121 1539 AKKAEEKKKADELKKA-----EELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEearieevmklyeeekkmkAEEA 1612
|
170 180 190
....*....|....*....|....*....|....*..
gi 1712965687 189 ARARVERENADIIR--EQIRLKAAEHRQTVLESIKTA 223
Cdd:PTZ00121 1613 KKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKA 1649
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
807-962 |
8.43e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.95 E-value: 8.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 807 APVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPP---PSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEV 883
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPasaPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 884 TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPPSAEAPLAEDVA 961
Cdd:PRK07994 450 RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKLAAEAIERDPWA 527
|
.
gi 1712965687 962 A 962
Cdd:PRK07994 528 A 528
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
60-221 |
9.00e-07 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 53.03 E-value: 9.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 60 DKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyQDKLARQRYEDQL 139
Cdd:pfam15709 359 EQRRLQQEQLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQ-QEEFRRKLQELQR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 140 RQQQilnEENLR-KQEESVQKQEAMRKATiEH----EMELRHKNELLRIEAESKARARVErenadiiREQIRLKAAEHRQ 214
Cdd:pfam15709 438 KKQQ---EEAERaEAEKQRQKELEMQLAE-EQkrlmEMAEEERLEYQRQKQEAEEKARLE-------AEERRQKEEEAAR 506
|
....*..
gi 1712965687 215 TVLESIK 221
Cdd:pfam15709 507 LALEEAM 513
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
63-218 |
9.23e-07 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 52.23 E-value: 9.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 63 RHAKEALDLARMQ-EQSTQLEHQSKIKeYEAAVEQLKGDQIRIqgEERRKTLNEETKQHQARAQyqdklARQRYEDQLrQ 141
Cdd:pfam13868 9 RELNSKLLAAKCNkERDAQIAEKKRIK-AEEKEEERRLDEMME--EERERALEEEEEKEEERKE-----ERKRYRQEL-E 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 142 QQILNEENLRKQEESVQKQEA-MRKATIEHEMELRHKNELLRIEAESKARarveRENADIIREQIRLKAAEHRQTVLE 218
Cdd:pfam13868 80 EQIEEREQKRQEEYEEKLQEReQMDEIVERIQEEDQAEAEEKLEKQRQLR----EEIDEFNEEQAEWKELEKEEEREE 153
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-223 |
1.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 36 KPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERR----K 111
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 112 TLNEETKQHQARAQYQDKLAR--QRYEDQLRQQQILNEENLRKQE-----------ESVQKQEAMRKATIEHEMELRHKN 178
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdaKKAEAARKAEEVRKAEELRKAEdarkaeaarkaEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 179 ELLRIEAESKARARVERENADI-----------IREQIRLKAAEHRQTvlESIKTA 223
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrkfeearmahfARRQAAIKAEEARKA--DELKKA 1286
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-232 |
1.54e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEaavEQLKGDQIRIQGEE--------RRKTLNEETKQHQ 121
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEEnkikaaeeAKKAEEDKKKAEE 1679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKAtiehEMELRHKNELLRIEAESKAR----ARVEREN 197
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA----EEENKIKAEEAKKEAEEDKKkaeeAKKDEEE 1755
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965687 198 adiiREQIRLKAAEHRQTVLESIKTAGAVFGEGFR 232
Cdd:PTZ00121 1756 ----KKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
49-255 |
1.78e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKSRHAKEALD--LARMQEQSTQLEHqsKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQY 126
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEeeLEELEAELEELRE--ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEM----ELRHKNELLRIEAEskaRARVERENADIIR 202
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqqrLAELEEELEEAQEE---LEELEEELEQLEN 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 203 EQIRLKAAEHRQTVLESIKTAGAVFgeGFRAFVSDWDKVTATVAGLTLLAVGV 255
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALL--ALLGLGGSLLSLILTIAGVLFLVLGL 285
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-211 |
1.92e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 51.07 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAkdlDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK------GDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 23 ERDAQIA---EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKeerkryRQELEEQIEEREQKRQEEYEEKLQE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 124 AQYQDKLARQRYEDQLRQQQILNEENLRKQEEsVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIRE 203
Cdd:pfam13868 100 REQMDEIVERIQEEDQAEAEEKLEKQRQLREE-IDEFNEEQAEWKE-LEKEEEREEDERILEYLKEKAEREEEREAEREE 177
|
....*...
gi 1712965687 204 QIRLKAAE 211
Cdd:pfam13868 178 IEEEKERE 185
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
340-457 |
1.93e-06 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 49.03 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRS--- 415
Cdd:cd19529 28 KGILLYGPPGTGKTLLAKAVATESNANFISVKGPELlSKWVGESEKAIREIFRKARQVAP-CVIFFDEIDSIAPRRGttg 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965687 416 ----TEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19529 107 dsgvTERVVNQLLTELDGL-----EEMNGVVVIAATNRPDIIDPAL 147
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
340-465 |
2.28e-06 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 48.66 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRSTeK 418
Cdd:cd19528 28 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWfGESEANVRDIFDKARAAAP-CVLFFDELDSIAKARGG-N 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 419 ISEDLRAT---LNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIV 465
Cdd:cd19528 106 IGDAGGAAdrvINQILTEMdGMNTKKNVFIIgATNRPDIIDPAIlrPGRLDQLI 159
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-200 |
2.51e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEAAveqlKGDQIRIQGEERRKTLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1662 KAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 131 ARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELlrIEAESKARARVERENADI 200
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL--DEEDEKRRMEVDKKIKDI 1803
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
340-457 |
2.94e-06 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 48.59 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:cd19519 35 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEImSKLAGESESNLRKAFEEAEKNAPA-IIFIDEIDAIAPKREKTH 113
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965687 419 ISEDLRATLNAFLYRTGEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19519 114 GEVERRIVSQLLTLMDGLKQRAHVIVMaATNRPNSIDPAL 153
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-221 |
2.96e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEA----LDLARMQEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 155 ERILEYLKEKAEREEEREAereeIEEEKEREIARLRAQQEKAQDEKAERDELRAKlyQEEQERKERQKEREEAEKKARQR 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 124 A------QYQDKLARQRYEDQLRQQQILNEENLRKQEEsvQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:pfam13868 235 QelqqarEEQIELKERRLAEEAEREEEEFERMLRKQAE--DEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREE 312
|
170 180
....*....|....*....|....
gi 1712965687 198 ADIIREQIRlKAAEHRQTVLESIK 221
Cdd:pfam13868 313 ELEEGERLR-EEEAERRERIEEER 335
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
823-979 |
3.06e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.40 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 823 AAPLVQDVIAPVvevTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPL-AEDVAAPV 901
Cdd:PRK07994 362 AAPLPEPEVPPQ---SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLqRAQGATKA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 902 VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAplaEDVAAP-----VVEVTPPPSAEAP 976
Cdd:PRK07994 439 KKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKK---EPVATPkalkkALEHEKTPELAAK 515
|
...
gi 1712965687 977 LAE 979
Cdd:PRK07994 516 LAA 518
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
818-1034 |
3.28e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 51.14 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 818 EEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVE--APLAEDVAAPVVEVTP-PPSAEAPLA 894
Cdd:PRK12727 48 EELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQrvASAAEDMIAAMALRQPvSVPRQAPAA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 895 EDVAAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVevtpPPSAEAPLAEDVAAPVVEVTPPPSAE 974
Cdd:PRK12727 128 APVRAASI-PSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV----PRAPVQAPVVAAPAPVPAIAAALAAH 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 975 APLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVevtpPPSVEAPLAEDVAAPVVEVTPPP 1034
Cdd:PRK12727 203 AAYAQDDDEQLDD--DGFDLDDALPQILPPAAL----PPIVVAPAAPAALAAVAAAAPAP 256
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
928-1073 |
3.35e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 51.25 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 928 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPvv 1007
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAP-- 438
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 1008 evtppPSVEAPLAEDVAAPVVEVTPPPSAEVKctlsdgldsdntVKAEPASETEHLAQPAASAETE 1073
Cdd:PRK14951 439 -----AAAPAAVALAPAPPAQAAPETVAIPVR------------VAPEPAVASAAPAPAAAPAAAR 487
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
3.82e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDLDKSRHAKEAldlaRMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKtLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEA----RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 131 ARQRYEDQLRQ-QQILNEENLRKQEESVQKQEAMRKATIEHEM-ELRHKNELLRIEAESKARARVERENADIIREQ---- 204
Cdd:PTZ00121 1275 EEARKADELKKaEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAeaea 1354
|
170
....*....|..
gi 1712965687 205 --IRLKAAEHRQ 214
Cdd:PTZ00121 1355 aaDEAEAAEEKA 1366
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
4.13e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDLDKSRHAKE---ALDL-----ARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTLNEETKQHQA 122
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEvrkAEELrkaedARKAEAARKAEEERKAEEARKAEDAKKAEAVK-KAEEAKKDAEEAKKAEEE 1248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 123 RAQYQ-DKLARQRYEDQLRQQQILNEEN------LRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVER 195
Cdd:PTZ00121 1249 RNNEEiRKFEEARMAHFARRQAAIKAEEarkadeLKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
170 180
....*....|....*....|....*.
gi 1712965687 196 ENADIIReqirlKAAEHRQTVLESIK 221
Cdd:PTZ00121 1329 KKADAAK-----KKAEEAKKAAEAAK 1349
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
340-457 |
4.36e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 48.06 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRST 416
Cdd:cd19503 35 RGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSI--VSKylgESEKNLREIFEEARSHAPS-IIFIDEIDALAPKREE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965687 417 --EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19503 112 dqREVERRVVAQLLT-LMDGMSSRGKVVVIAATNRPDAIDPAL 153
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
340-461 |
4.65e-06 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 48.45 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM----GRDGVTAMHKVFDWANTSrrglLLFVDEADAFLRKRS 415
Cdd:cd19525 56 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKwvgeGEKMVRALFSVARCKQPA----VIFIDEIDSLLSQRG 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 416 tEKISEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19525 132 -EGEHESSRRIKTEFLVQldgaTTSSEDRILVVGATNRPQEIDEAARRRL 180
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
4.68e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDLDKSRHAKEALDLaRMQEQSTQLEHQSKIKEYE----AAVEQLKGDQIRIQGEERRKTlNEETKQHQARAQY 126
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEeakkAEEDKKKAEEAKKAEEDEKKA-AEALKKEAEEAKK 1703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 QDKLARQRYEDQLRQQQILNEENLR--KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARA-RVERENADIIRE 203
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEE 1783
|
170
....*....|....*...
gi 1712965687 204 QIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIK 1801
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
877-1085 |
4.75e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 50.69 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 877 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS----AEAPLAEDVAAPVVEV-TPPPS 951
Cdd:pfam05109 440 AAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSprdnGTESKAPDMTSPTSAVtTPTPN 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 952 AEAPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL------AEDVAAPVVEVTPPPSVEAPLAEDVAA 1025
Cdd:pfam05109 520 ATSP------TPAV-TTPTPNATSPTLGKTSPTSAVTTPTPNATSPTpavttpTPNATIPTLGKTSPTSAVTTPTPNATS 592
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 1026 PVVEVTPPPSAEVKCTLSdGLDSDNTVKAEPASET------EHLAQPAASAETEAKMKKEDKTVSP 1085
Cdd:pfam05109 593 PTVGETSPQANTTNHTLG-GTSSTPVVTSPPKNATsavttgQHNITSSSTSSMSLRPSSISETLSP 657
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
807-935 |
5.22e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.48 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 807 APVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAedvaapvvevtPP 886
Cdd:PRK14951 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA-----------LA 448
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1712965687 887 PSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 935
Cdd:PRK14951 449 PAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-214 |
5.33e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.92 E-value: 5.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQsKIKEYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARaQ 125
Cdd:pfam13868 53 RERALEEEEEKEEERKEERKRYRQELEEQIEEREQK-RQEEYEEKLqerEQMDEIVERIQEEDQAEAEEKLEKQRQLR-E 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 126 YQDKLARQRYEDQLRQQQILNEENLR------KQEESVQKQEAMRK--------------ATIEHEMELRHKNELLRI-- 183
Cdd:pfam13868 131 EIDEFNEEQAEWKELEKEEEREEDERileylkEKAEREEEREAEREeieeekereiarlrAQQEKAQDEKAERDELRAkl 210
|
170 180 190
....*....|....*....|....*....|....
gi 1712965687 184 ---EAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam13868 211 yqeEQERKERQKEREEAEKKARQRQELQQAREEQ 244
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
623-1034 |
5.49e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.09 E-value: 5.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 623 AAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEpplvpdviAPIVEVTPPPSEEAVAAAPLVQDVI 702
Cdd:PHA03247 2687 AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP--------ALPAAPAPPAVPAGPATPGGPARPA 2758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 703 TPVVEVTPPPSEeavaaaaaplvqdviAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIA 782
Cdd:PHA03247 2759 RPPTTAGPPAPA---------------PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS 2823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 783 PVVEVAPPPSeeavaaapvaedviapVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTP-PPSEEAAAPVAEDVIAPVVEVT 861
Cdd:PHA03247 2824 PAGPLPPPTS----------------AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRrPPSRSPAAKPAAPARPPVRRLA 2887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 862 PPLAVEVEAPLAEDVAAPVVEVTPPPSAEA---PLAEDVAAPVVEVTPPPSAEAPLAEDV-AAPVVE---VTPPPSAEAP 934
Cdd:PHA03247 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPqpqPQPPPPPQPQPPPPPPPRPQPPLAPTTdPAGAGEpsgAVPQPWLGAL 2967
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 935 LAEDVAAPVVEVTPP-PSAEAP-----------------------LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 990
Cdd:PHA03247 2968 VPGRVAVPRFRVPQPaPSREAPasstppltghslsrvsswasslaLHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDS 3047
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1712965687 991 PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPP 1034
Cdd:PHA03247 3048 ERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-223 |
6.60e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 6.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 55 AAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG-------DQIRIQGE-----ERRKTLNEETKQHQA 122
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseleeEIEELQKElyalaNEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 123 RAQY--QDKLARQRYEDQLRQQQILNEENL---RKQEESVQKQ-EAMRKATIEHEM---ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02168 310 RLANleRQLEELEAQLEELESKLDELAEELaelEEKLEELKEElESLEAELEELEAeleELESRLEELEEQLETLRSKVA 389
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965687 194 ERE------NADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:TIGR02168 390 QLElqiaslNNEIERLEARLERLEDRRERLQQEIEE 425
|
|
| flagell_FliJ |
TIGR02473 |
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly ... |
69-193 |
1.18e-05 |
|
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Pssm-ID: 131526 [Multi-domain] Cd Length: 141 Bit Score: 46.15 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETK------QHQARAQYQDKLarqryeDQLRQQ 142
Cdd:TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQL--QQLIKYREEYEQQALEKVGagtsalELSNYQRFIRQL------DQRIQQ 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 143 QILNEENLRKQEEsvQKQEAMRKATIEHEM--ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02473 80 QQQELALLQQEVE--AKRERLLEARRELKAleKLKEKKQKEYRAEEAKREQKE 130
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
755-957 |
1.22e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.49 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 755 VIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVqdVIAPV 834
Cdd:PRK12323 382 VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP--AAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 835 VEVTPPPSEEAAAPVAEdviapvvEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 914
Cdd:PRK12323 460 AAARPAAAGPRPVAAAA-------AAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1712965687 915 AEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 957
Cdd:PRK12323 533 DPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
73-211 |
1.88e-05 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 46.46 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 73 RMQEQSTQLEHQSKikEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLA---RQRYEdqlRQQQI--LNE 147
Cdd:pfam08614 11 RLLDRTALLEAENA--KLQSEPESVLPSTSSSKLSKASPQSASIQSLEQLLAQLREELAelyRSRGE---LAQRLvdLNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 148 ENLRKQEESVQKQEAMRKATIE----------HEMELRHKNEL----------LRIE---AESKARaRVERENADIIREQ 204
Cdd:pfam08614 86 ELQELEKKLREDERRLAALEAEraqleeklkdREEELREKRKLnqdlqdelvaLQLQlnmAEEKLR-KLEKENRELVERW 164
|
....*..
gi 1712965687 205 IRLKAAE 211
Cdd:pfam08614 165 MKRKGQE 171
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
620-762 |
1.97e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 48.88 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 620 AEVAAPQIQDV-ITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK10811 863 EVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV 942
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 699 QDVITPVVEVTPPPSEEAVAAAAAP-LVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEV 762
Cdd:PRK10811 943 AEHAEPVVEPQDETADIEEAAETAEvVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
340-461 |
1.99e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 46.00 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTGGDVApmgrDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKR 414
Cdd:cd19524 34 RGLLLFGPPGNGKTMLAKAVAAESNATFfnisaASLTSKYVG----EGEKLVRALFAVA-RELQPSIIFIDEVDSLLSER 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 415 STEKISEDLRATLNAFLYRTGEQSNKFMLVL---ASNQPEQFDWAINDRI 461
Cdd:cd19524 109 SEGEHEASRRLKTEFLIEFDGVQSNGDDRVLvmgATNRPQELDDAVLRRF 158
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
912-1038 |
2.42e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 48.32 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 912 APLAEDVAAPVV-EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL-AEDVAAPVVEVT 989
Cdd:PRK07994 363 APLPEPEVPPQSaAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLqRAQGATKAKKSE 442
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1712965687 990 PPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEV 1038
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKK 491
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
832-1013 |
2.69e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 48.37 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 832 APVVEVTPPPSEEAAAPVAEDViAPVVEVTpplavEVEAPlaeDVAAPVVEVTPP-PSAEAPlaedvaAPVVeVTPPPSA 910
Cdd:pfam05109 471 ADVTSPTPAGTTSGASPVTPSP-SPRDNGT-----ESKAP---DMTSPTSAVTTPtPNATSP------TPAV-TTPTPNA 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 911 EAPLAEDVAAPVVEVTPPPSAEAPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvaaPVVEVTP 990
Cdd:pfam05109 535 TSPTLGKTSPTSAVTTPTPNATSP------TPAV-TTPTPNATIPTLGKTSPTSAVTTPTPNATSP-------TVGETSP 600
|
170 180
....*....|....*....|....
gi 1712965687 991 PP-SAEAPLAEDVAAPVveVTPPP 1013
Cdd:pfam05109 601 QAnTTNHTLGGTSSTPV--VTSPP 622
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
860-987 |
2.87e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.27 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 860 VTPPLAVEVEAPLAEDVAAPV-VEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAED 938
Cdd:PRK14950 343 TTSYGQLPLELAVIEALLVPVpAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRP 416
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1712965687 939 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 987
Cdd:PRK14950 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
790-1017 |
3.31e-05 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 47.70 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 790 PPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVE 869
Cdd:COG0515 255 YQSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAA 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 870 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 949
Cdd:COG0515 335 ALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAA 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 950 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA 1017
Cdd:COG0515 415 AAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALAAAAAAAALALA 482
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
819-1080 |
3.77e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 819 EAVAAAPLVQDVIAPVVE---VTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAE 895
Cdd:PRK07764 532 AILLPEATVLGVRGDTLVlgfSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEE 611
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 896 DV--AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevTPPPSA 973
Cdd:PRK07764 612 AArpAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP----PPAPAP 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 974 EAPLAEDVAAPvvevtpPPSAEAPLAEDVAAPVVE-VTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTV 1052
Cdd:PRK07764 688 AAPAAPAGAAP------AQPAPAPAATPPAGQADDpAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
|
250 260
....*....|....*....|....*...
gi 1712965687 1053 KAEPASETEHLAQPAASAETEAKMKKED 1080
Cdd:PRK07764 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDD 789
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-214 |
4.24e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKSRHAKEALDLARMQE-QSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTlNEETKQHQARA--Q 125
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELK-KAEEKKKA-DEAKKAEEKKKadE 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 126 YQDKLARQRYEDQLRQQQilnEENLRKQEESVQK-QEAMRKATIEHEMELRHKNELLRIEAESKArARVERENADIIREQ 204
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKA---EEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-AEKKKEEAKKKADA 1382
|
170
....*....|
gi 1712965687 205 IRLKAAEHRQ 214
Cdd:PTZ00121 1383 AKKKAEEKKK 1392
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
53-211 |
4.26e-05 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 47.38 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 53 AQAAKDLDKSRHAKEAL--DLARMQEQSTQLEHQSKIKE------YEAAVEQLK--GDQIRIQGEE-------------- 108
Cdd:PRK11637 85 SQASRKLRETQNTLNQLnkQIDELNASIAKLEQQQAAQErllaaqLDAAFRQGEhtGLQLILSGEEsqrgerilayfgyl 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 109 ---RRKTLNE--ETKQH--QARAQYQDKLARQR---YEDQLRQQQILNEENLRKQ-----EESVQKQEAMRKATIEHEME 173
Cdd:PRK11637 165 nqaRQETIAElkQTREElaAQKAELEEKQSQQKtllYEQQAQQQKLEQARNERKKtltglESSLQKDQQQLSELRANESR 244
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965687 174 LRhkNELLRIEAESKARArvEREnadiIREQIRLKAAE 211
Cdd:PRK11637 245 LR--DSIARAEREAKARA--ERE----AREAARVRDKQ 274
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
897-1008 |
4.40e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 47.50 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 897 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSAEAP 976
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965687 977 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 1008
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
4.50e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 4.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 51 RAAQAAKDldKSRHAKEALDLARMQEQSTQLEHQSKIKEyeaavEQLKGDQIRIQGEERRKTlnEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1431 KKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAE-----EAKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADE 1501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 131 ARQRYEDQLRQqqilneENLRKQEESvQKQEAMRKATiehemELRHKNELLRIEaeskararvERENADIIREQIRLKAA 210
Cdd:PTZ00121 1502 AKKAAEAKKKA------DEAKKAEEA-KKADEAKKAE-----EAKKADEAKKAE---------EKKKADELKKAEELKKA 1560
|
170
....*....|.
gi 1712965687 211 EHRQTVLESIK 221
Cdd:PTZ00121 1561 EEKKKAEEAKK 1571
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
633-1034 |
5.10e-05 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 47.45 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 633 QVLEAMPPP--SVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPiveVTPPPSEEAVAAAP--LVQDVITPVVEV 708
Cdd:pfam03154 165 QILQTQPPVlqAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPA---TSQPPNQTQSTAAPhtLIQQTPTLHPQR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 709 TPPPSeeavaaaaaPLVQDVIAPvvevtPPPSEEAVAAAAAPLVQDVIAPV---VEVTPPPSEEAAAAAPLVQDVIAPVV 785
Cdd:pfam03154 242 LPSPH---------PPLQPMTQP-----PPPSQVSPQPLPQPSLHGQMPPMphsLQTGPSHMQHPVPPQPFPLTPQSSQS 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 786 EVAPPPSEEAVAAAPVAEDVIAPVVEVTP--PPSEEAVAAAPLvqdviaPVVEVTPPPSeeaaapvaedviAPVVEVTPP 863
Cdd:pfam03154 308 QVPPGPSPAAPGQSQQRIHTPPSQSQLQSqqPPREQPLPPAPL------SMPHIKPPPT------------TPIPQLPNP 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 864 LAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEdvaapvVEVTPPPSAEAPLAEdvAAPVVEVTPPPSAEAPLAEDVAA-- 941
Cdd:pfam03154 370 QSHKHPPHLSGPSPFQMNSNLPPPPALKPLSS------LSTHHPPSAHPPPLQ--LMPQSQQLPPPPAQPPVLTQSQSlp 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 942 PVVEVTPPPSAEAPLAEDVAAPVVEVTP--PPSAEAPLAEDVAAP--VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA 1017
Cdd:pfam03154 442 PPAASHPPTSGLHQVPSQSPFPQHPFVPggPPPITPPSGPPTSTSsaMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKE 521
|
410
....*....|....*..
gi 1712965687 1018 PLAEDVAAPvvEVTPPP 1034
Cdd:pfam03154 522 EALDEAEEP--ESPPPP 536
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
637-1015 |
6.01e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 47.15 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 637 AMPPPSVEAAAPQAQDVATPIAEVTPppsvevepplvpdviAPIVEVTPPPSEEAVAAAPlvqdvITPVVEVTPPPSEEa 716
Cdd:PRK07003 379 AVPAPGARAAAAVGASAVPAVTAVTG---------------AAGAALAPKAAAAAAATRA-----EAPPAAPAPPATAD- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 717 vaAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAplvqdviapvvevtpppseeaaaaaplvQDVIAPVVEVAPPPSEEAV 796
Cdd:PRK07003 438 --RGDDAADGDAPVPAKANARASADSRCDERDA----------------------------QPPADSGSASAPASDAPPD 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 797 AAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTP---PPSEEAAAPVAEDV-IAPVVEVTPPLAVEVEAPL 872
Cdd:PRK07003 488 AAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPearPPTPAAAAPAARAGgAAAALDVLRNAGMRVSSDR 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 873 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSAEAPLAEDvaapvvevTPPPSAEAPLAEDVAAPvvevtPPPSA 952
Cdd:PRK07003 568 GARAAAAAKPAAAPAAAPKPAAPRVAVQV----PTPRARAATGDA--------PPNGAARAEQAAESRGA-----PPPWE 630
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 953 EAPLAEDVAAPVVEVTPPPsaeaplaEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP-PPSV 1015
Cdd:PRK07003 631 DIPPDDYVPLSADEGFGGP-------DDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPlPPAI 687
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
622-841 |
7.76e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.96 E-value: 7.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 622 VAAPQIQDVITQvleamPPPSVEAAAPQAQDVATPiAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDV 701
Cdd:PRK10811 847 VVRPQDVQVEEQ-----REAEEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 702 ITPVVEVTPPpseeavaaaaaplVQDVIAPVVEVTPPPSEEAVAaaaaplVQDVIAPVVEVTPPPSEEAAAAAPLVQDVI 781
Cdd:PRK10811 921 AAPVTEQPQV-------------ITESDVAVAQEVAEHAEPVVE------PQDETADIEEAAETAEVVVAEPEVVAQPAA 981
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDviapvvEVTPPPSEEAVAAAPLVQdviAPVVEVTPPP 841
Cdd:PRK10811 982 PVVAEVAAEVETVTAVEPEVAPA------QVPEATVEHNHATAPMTR---APAPEYVPEA 1032
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
782-940 |
8.92e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.40 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPP-------PSEEAAAPVAEDVI 854
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqraqgaTKAKKSEPAAASRA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 855 APVVEVTPPLAveveAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 934
Cdd:PRK07994 450 RPVNSALERLA----SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525
|
....*.
gi 1712965687 935 LAEDVA 940
Cdd:PRK07994 526 WAALVS 531
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
578-978 |
9.09e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 9.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 578 TPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPqiqdvitqvlEAMPPPSVEAAAPQAqdvATPI 657
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP----------PAPAPPAAPAAGPPR---RLTR 2785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 658 AEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVI--APVVEV 735
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRR 2865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 736 TPP-PSEEAVAAAAAPLVQDVIAPVVEVTPppseeaaaaaplvQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTP 814
Cdd:PHA03247 2866 PPSrSPAAKPAAPARPPVRRLARPAVSRST-------------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP 2932
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 815 PPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPlAEDVAAPVVEVTPPPSAEAP-- 892
Cdd:PHA03247 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP-ASSTPPLTGHSLSRVSSWASsl 3011
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 893 -LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 971
Cdd:PHA03247 3012 aLHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
....*...
gi 1712965687 972 -SAEAPLA 978
Cdd:PHA03247 3092 lSANAALS 3099
|
|
| RecA-like_Yta7-like |
cd19517 |
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ... |
340-467 |
9.96e-05 |
|
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410925 [Multi-domain] Cd Length: 170 Bit Score: 44.04 E-value: 9.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDyaimtGGDVAPMGRDGVTAMHKvfdWANTSRRGL-------------LLFVDE 406
Cdd:cd19517 35 RGVLFHGPPGTGKTLMARALAAECSKG-----GQKVSFFMRKGADCLSK---WVGEAERQLrllfeeayrmqpsIIFFDE 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 407 ADAFLRKRST--EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAIN--DRIDEIVNF 467
Cdd:cd19517 107 IDGLAPVRSSkqEQIHASIVSTLLA-LMDGLDNRGQVVVIGATNRPDALDPALRrpGRFDREFYF 170
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
876-1061 |
1.02e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 46.13 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 876 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP----LAEDVAAPVVEVTPPPS 951
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNqpddVAEAVKAEVAEVTDEVA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 952 AEAPLAEDV----AAPVVEVTPPPSAEAPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 1027
Cdd:PRK13108 346 AESVVQVADrdgeSTPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
|
170 180 190
....*....|....*....|....*....|....
gi 1712965687 1028 VEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETE 1061
Cdd:PRK13108 424 PDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
853-966 |
1.05e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 46.34 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 853 VIAPVVEVTPPLAVEVEAPlAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSAE 932
Cdd:PRK14950 356 IEALLVPVPAPQPAKPTAA-APSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKL 431
|
90 100 110
....*....|....*....|....*....|....
gi 1712965687 933 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 966
Cdd:PRK14950 432 TRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
783-914 |
1.20e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 46.25 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 783 PVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTP 862
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1712965687 863 PLAVEVEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 914
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
918-1029 |
1.27e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.96 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 918 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSAEAP 997
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965687 998 LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVE 1029
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PKK |
pfam12474 |
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ... |
69-218 |
1.37e-04 |
|
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.
Pssm-ID: 463600 [Multi-domain] Cd Length: 139 Bit Score: 42.93 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 69 LDLARMQ-EQSTQLEHQSKIKEYEAAVEQLKgdqiRIQgeerrKTLNEETKQHQArAQYQDKLARQRYEDQLRQQQILne 147
Cdd:pfam12474 1 HQLQKEQqKDRFEQERQQLKKRYEKELEQLE----RQQ-----KQQIEKLEQRQT-QELRRLPKRIRAEQKKRLKMFR-- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 148 ENLrKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLkAAEHRQTVLE 218
Cdd:pfam12474 69 ESL-KQEKKELKQEVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQL-QNEKRKELAE 137
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
68-214 |
1.40e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.90 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 68 ALDLARMQEQSTQLEHQSKIkeyEAAVEQLKGDQIRIQGEERRKTLNEETKQ-HQARAQYQDKLAR--QRYEDQLRQQQI 144
Cdd:pfam07111 480 SLELEQLREERNRLDAELQL---SAHLIQQEVGRAREQGEAERQQLSEVAQQlEQELQRAQESLASvgQQLEVARQGQQE 556
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 145 LNEENLRKQEESVQKQEAMRKATIEH--EMELRHKNELlrieAESKAR---ARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam07111 557 STEEAASLRQELTQQQEIYGQALQEKvaEVETRLREQL----SDTKRRlneARREQAKAVVSLRQIQHRATQEKE 627
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
341-411 |
1.40e-04 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 45.82 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 341 NILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE------- 406
Cdd:COG2256 51 SMILWGPPGTGKTTLARLIANATDAEFvalsAVT----------SGVKDIREVIEEARERRaygRRTILFVDEihrfnka 120
|
....*.
gi 1712965687 407 -ADAFL 411
Cdd:COG2256 121 qQDALL 126
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
826-945 |
1.41e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.96 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 826 LVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEvtPPLAVEVEAPLAEDVAAPVvevTPPPSAeaplAEDVAAPVVEVT 905
Cdd:PRK14950 355 VIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTR--PKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVPHTP 425
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965687 906 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 945
Cdd:PRK14950 426 ESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
852-943 |
1.52e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.22 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 852 DVIAPVVEVTP--PLAVEVEAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 929
Cdd:PRK11633 54 DMMPAATQALPtqPPEGAAEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAP 131
|
90
....*....|....*
gi 1712965687 930 S-AEAPLAEDVAAPV 943
Cdd:PRK11633 132 KpEPKPVVEEKAAPT 146
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
782-983 |
1.63e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.75 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDViAPVVEVT 861
Cdd:PRK07764 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA-APAAPAG 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 862 PPLAVEVEAPLAEDVAAPVVE-VTPPPSAEAPLAEDVAAPVVEVTPPPsaeAPLAEDVAAPVVEvtPPPSAEAPLAEDVA 940
Cdd:PRK07764 696 AAPAQPAPAPAATPPAGQADDpAAQPPQAAQGASAPSPAADDPVPLPP---EPDDPPDPAGAPA--QPPPPPAPAPAAAP 770
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1712965687 941 APVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAA 983
Cdd:PRK07764 771 AAAPPPSPPSEEEEMAEDDAPSM-----DDEDRRDAEEVAMEL 808
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-214 |
1.63e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDlARMQEQSTQLEHQSKIKEY-EAAVEQLKGDQIRIQGEER--RKTLNEETKQHQARAQY 126
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAE-EQLVQANGELEKASREETFaRTALKNARLDLRRLFDEKQseKDKKNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 127 Q-DKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-------------KATIEHEmELRHKNELLRIEAESKAR-- 190
Cdd:pfam12128 683 RlNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQvvegaldaqlallKAAIAAR-RSGAKAELKALETWYKRDla 761
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965687 191 ---------ARVERENADIIR--EQIRLKAAEHRQ 214
Cdd:pfam12128 762 slgvdpdviAKLKREIRTLERkiERIAVRRQEVLR 796
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
782-933 |
1.71e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 45.33 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAV---AAAPLVQDVIAPVVEVTPPPseEAAAPVAEDVIAPVV 858
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAApakAAAAPAKAAAPPAKAAAPPA--KAAAPPAKAAAPPAK 280
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 859 EVTPPlaVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 933
Cdd:PTZ00436 281 AAAPP--AKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKA 353
|
|
| RecA-like_fidgetin |
cd19523 |
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ... |
340-460 |
1.75e-04 |
|
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410931 [Multi-domain] Cd Length: 163 Bit Score: 43.33 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG-GDVAPMGRDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKRSTE- 417
Cdd:cd19523 34 RSILLFGPRGTGKTLLGRCLASQLGATFLRLRGsTLVAKWAGEGEKILQASFLAAR-CRQPSVLFISDLDALLSSQDDEa 112
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1712965687 418 ----KISEDLRATLNAFLyrtGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19523 113 spvgRLQVELLAQLDGVL---GSGEDGVLVVCTTSKPEEIDESLRRY 156
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
817-944 |
1.78e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 45.34 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 817 SEEAVAA--APLVQDVIAPVVEVTPPPS-EEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPL 893
Cdd:PRK06995 44 ADSDLAAlaPPAAAAPAAAQPPPAAAPAaVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 894 AEDVAAPVVEVTPPPSAEAPLAEDVAApvvevTPPPSAEAPLAEDVAAPVV 944
Cdd:PRK06995 124 AAENAARRLARAAAAAPRPRVPADAAA-----AVADAVKARIERIVNDTVM 169
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
340-457 |
1.82e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 43.16 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMD-YAIMTGGDVAPMGRDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKRST-- 416
Cdd:cd19518 35 RGVLLHGPPGCGKTMLANAIAGELKVPfLKISATEIVSGVSGESEEKIRELFDQA-ISNAPCIVFIDEIDAITPKRESaq 113
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965687 417 ----EKISEDLRATLNAFLYRtgEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19518 114 remeRRIVSQLLTCMDELNNE--KTAGGPVLVIgATNRPDSLDPAL 157
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
341-452 |
1.85e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 42.66 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 341 NILMYGPPGTGKTLFAKKLA------------MHSGMDYAIMTGG-DVAPMG---RDG--VTAMhkvfdwantsRRGLLL 402
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAaalsnrpvfyvqLTRDTTEEDLFGRrNIDPGGaswVDGplVRAA----------REGEIA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 403 FVDEADaflrkrsteKISEDLRATLNAFLY-----------RTGEQSNKFMLVLASNQPEQ 452
Cdd:pfam07728 71 VLDEIN---------RANPDVLNSLLSLLDerrlllpdggeLVKAAPDGFRLIATMNPLDR 122
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
813-1014 |
2.01e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 45.30 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 813 TPPPSEEAVAAAPLVQDVIAPvVEVTPPPSEEAAAPVAEDVIAPVVEVTpplavevEAPLAEDVAAPVVEvtpPPSAEAP 892
Cdd:PLN03209 387 IPTPPSSSPASSKSVDAVAKP-AEPDVVPSPGSASNVPEVEPAQVEAKK-------TRPLSPYARYEDLK---PPTSPSP 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 893 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvTPPPSAEAPLAedvAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPS 972
Cdd:PLN03209 456 TAPTGVSPSVSSTSSVPAVPDTAPATAATDAA-APPPANMRPLS---PYAVYDDLKPPTSPSP-----AAPVGKVAPSST 526
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 973 AEAPLAEDVAAPV--------VEVTPPPSAEAPLAEDVAAPvveVTPPPS 1014
Cdd:PLN03209 527 NEVVKVGNSAPPTaladeqhhAQPKPRPLSPYTMYEDLKPP---TSPTPS 573
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
847-1074 |
2.12e-04 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 45.00 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 847 APVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPV---VEVTP---PPSAEAPLAE--------DVAAPVVEVTPPPSAEA 912
Cdd:COG0515 210 GDSPAELLRAHLREPPPPPSELRPDLPPALDAIVlraLAKDPeerYQSAAELAAAlravlrslAAAAAAAAAAAAAAAAA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 913 PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 992
Cdd:COG0515 290 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 993 SAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAET 1072
Cdd:COG0515 370 AAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAA 449
|
..
gi 1712965687 1073 EA 1074
Cdd:COG0515 450 AA 451
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
926-1006 |
2.36e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.84 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 926 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 1003
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965687 1004 APV 1006
Cdd:PRK11633 144 APT 146
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
905-985 |
2.36e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.84 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 905 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 982
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965687 983 APV 985
Cdd:PRK11633 144 APT 146
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
884-964 |
2.36e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.84 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 884 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 961
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965687 962 APV 964
Cdd:PRK11633 144 APT 146
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-482 |
2.88e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 44.90 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRS- 415
Cdd:TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI--MSKyygESEERLREIFKEAEENAPS-IIFIDEIDAIAPKREe 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 416 -TEKISEDLRATLNAFLYRTGEQSnKFMLVLASNQPEQFDWAIN--DRIDEIVNFALPGPDERDRLVRLY 482
Cdd:TIGR01243 290 vTGEVEKRVVAQLLTLMDGLKGRG-RVIVIGATNRPDALDPALRrpGRFDREIVIRVPDKRARKEILKVH 358
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
889-1005 |
3.05e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 44.41 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 889 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 968
Cdd:PRK12373 208 ASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPV-----PPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPV 282
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965687 969 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 1005
Cdd:PRK12373 283 SGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
107-214 |
3.09e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 42.34 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 107 EERRKTLNEETKQHQARAQYQDKLARQRYEDQLRQ---QQILNEENLRKQEESVQKQEAMRKATIE---HEMELRHKNEL 180
Cdd:pfam05672 17 AEKRRQAREQREREEQERLEKEEEERLRKEELRRRaeeERARREEEARRLEEERRREEEERQRKAEeeaEEREQREQEEQ 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965687 181 LRIEA---ESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam05672 97 ERLQKqkeEAEAKAREEAERQRQEREKIMQQEEQERL 133
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
867-937 |
3.35e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.99 E-value: 3.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 867 EVEAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 937
Cdd:COG5373 32 ELEAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
619-921 |
3.43e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 45.08 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 619 SAEVAAPQIQDVITQVLEA-----MPPPSVEAAAPqaqDVATPIAEVTPPPSVEVEPPlvpdVIAPIVEVTPPPSEEAVA 693
Cdd:PRK10263 317 TEPVAVAAAATTATQSWAApvepvTQTPPVASVDV---PPAQPTVAWQPVPGPQTGEP----VIAPAPEGYPQQSQYAQP 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 694 AAPLVQDVITPVvevtPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAA 773
Cdd:PRK10263 390 AVQYNEPLQQPV----QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 774 APLVQDVIAPVVEVAPPPSEEAVAAAPVaedviaPVVEVTPPPS------EEAVAAAPLVQDVIAPVVEVTPPPSEEaAA 847
Cdd:PRK10263 466 QTYQQPAAQEPLYQQPQPVEQQPVVEPE------PVVEETKPARpplyyfEEVEEKRAREREQLAAWYQPIPEPVKE-PE 538
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 848 PVAEDVIAPVVEVTPPLAvevEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 921
Cdd:PRK10263 539 PIKSSLKAPSVAAVPPVE---AAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRP 609
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-214 |
3.62e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKS-RHAKEALD-----LARMQEQSTQLEHQSKIKEYEAA-----VEQLKG--DQIRIQGEERRKTLNE 115
Cdd:TIGR02168 290 LYALANEISRLEQQkQILRERLAnlerqLEELEAQLEELESKLDELAEELAeleekLEELKEelESLEAELEELEAELEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 116 -ETKQHQARAQYQDklARQRYeDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVE 194
Cdd:TIGR02168 370 lESRLEELEEQLET--LRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180
....*....|....*....|
gi 1712965687 195 RENADIIREQIRLKAAEHRQ 214
Cdd:TIGR02168 447 EELEELQEELERLEEALEEL 466
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
947-1027 |
3.68e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.07 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 947 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVE-APLAEDVA 1024
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEpKPVVEEKA 143
|
...
gi 1712965687 1025 APV 1027
Cdd:PRK11633 144 APT 146
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
897-1025 |
3.71e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.59 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 897 VAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVtPPPSAEAP 976
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAA-----AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG-APSPPPAA 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965687 977 LAEDVAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSVEAPLAEDVAA 1025
Cdd:PRK07764 461 APSAQPAPAPAAAPEPTAaPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
336-411 |
3.87e-04 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 44.31 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 336 NGLYRNILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE-- 406
Cdd:PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFealsAVT----------SGVKDLREVIEEARQRRsagRRTILFIDEih 102
|
90
....*....|.
gi 1712965687 407 ------ADAFL 411
Cdd:PRK13342 103 rfnkaqQDALL 113
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
866-1028 |
4.18e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 44.19 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 866 VEVEAPLAEDVAApvvevtpppsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAedvAAPvve 945
Cdd:PRK06995 38 VEIVALADSDLAA--------------LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL---TAQ--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 946 vtpppsAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAApvvevTPPPSVEAPLAEDVAA 1025
Cdd:PRK06995 98 ------REQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA-----AVADAVKARIERIVND 166
|
...
gi 1712965687 1026 PVV 1028
Cdd:PRK06995 167 TVM 169
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
859-984 |
4.20e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 44.02 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 859 EVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 938
Cdd:PRK12373 199 EEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPV-----PPSEAARPKSADAETNAALKTPATAPKAAAKN 273
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965687 939 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 984
Cdd:PRK12373 274 AKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
780-941 |
4.71e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.09 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 780 VIAPVVEVAPPPSEEAVAAAPvaedviAPVVEVTPPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDvIAPVVE 859
Cdd:PRK07994 374 SAAPAASAQATAAPTAAVAPP------QAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK-SEPAAA 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 860 VTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPPSAEAPLAE 937
Cdd:PRK07994 447 SRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKLAAEAIERD 524
|
....
gi 1712965687 938 DVAA 941
Cdd:PRK07994 525 PWAA 528
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
68-213 |
4.91e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 43.87 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 68 ALDLARMQEQSTQLEHQskikeYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRYE-----DQL 139
Cdd:pfam15558 11 ALMLARHKEEQRMRELQ-----QQAALaweELRRRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREerrraDRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 140 RQQQILNE----------ENLRK----------------QEESVQKQEAMRKATIEHEMELRHKNELL----RIEAESKA 189
Cdd:pfam15558 86 EKQVIEKEsrwreqaedqENQRQeklerarqeaeqrkqcQEQRLKEKEEELQALREQNSLQLQERLEEachkRQLKEREE 165
|
170 180
....*....|....*....|....*
gi 1712965687 190 RARVEREN-ADIIREQIRLKAAEHR 213
Cdd:pfam15558 166 QKKVQENNlSELLNHQARKVLVDCQ 190
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
911-979 |
5.07e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.22 E-value: 5.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 911 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 979
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
890-958 |
5.07e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.22 E-value: 5.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 890 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 958
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
932-1000 |
5.07e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.22 E-value: 5.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 932 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 1000
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
340-457 |
5.10e-04 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 42.09 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLA-MHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGL-------LLFVDEADA 409
Cdd:cd19504 36 KGILLYGPPGTGKTLMARQIGkMLNAREPKIVNGPEILNkyVG-ESEANIRKLFADAEEEQRRLgansglhIIIFDEIDA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965687 410 FLRKRSTEKISEDLRATL-NAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19504 115 ICKQRGSMAGSTGVHDTVvNQLLSKIDgvEQLNNILVIGMTNRKDLIDEAL 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-200 |
5.38e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 40 KWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARM--QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEET 117
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 118 KQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
...
gi 1712965687 198 ADI 200
Cdd:COG1196 774 REI 776
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
342-457 |
6.15e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 41.73 E-value: 6.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTA-MHKVFDWANTSRRGLLLFvDEADAFLRKRST---- 416
Cdd:cd19527 29 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEAnVREVFQKARDAKPCVIFF-DELDSLAPSRGNsgds 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1712965687 417 ----EKISEDLRATLNAfLYRTGEQsnkFMLVLASNQPEQFDWAI 457
Cdd:cd19527 108 ggvmDRVVSQLLAELDG-MSSSGQD---VFVIGATNRPDLLDPAL 148
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
878-997 |
6.38e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 42.75 E-value: 6.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 878 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 957
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965687 958 EDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSAEAP 997
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
56-194 |
6.56e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 56 AKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEaaVEQLKGDQIRIQgEERRKTLNEETKQHQaRAQYQDKLARQRY 135
Cdd:pfam17380 445 AREMERVR--LEEQERQQQVERLRQQEEERKRKKLE--LEKEKRDRKRAE-EQRRKILEKELEERK-QAMIEEERKRKLL 518
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 136 EDQL--RQQQILNEENLRKQEESVQK----------QEAMRKATIEHEM--ELRHKNELLRIEAES-KARARVE 194
Cdd:pfam17380 519 EKEMeeRQKAIYEEERRREAEEERRKqqemeerrriQEQMRKATEERSRleAMEREREMMRQIVESeKARAEYE 592
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
869-1018 |
6.80e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 43.43 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 869 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEVTPPPSAEAPLAEDV----A 940
Cdd:PRK13108 280 EAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPddvaEAVKAEVAEVTDEVAAESVVQVADrdgeS 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 941 APVVEVTPPPSAEAPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSVEAP 1018
Cdd:PRK13108 360 TPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPdeLAVAGP 437
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
939-1045 |
7.46e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 939 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSVEAP 1018
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKLTR 433
|
90 100
....*....|....*....|....*...
gi 1712965687 1019 LAEDV-AAPVVEVTPPPSAEVKCTLSDG 1045
Cdd:PRK14950 434 AAIPVdEKPKYTPPAPPKEEEKALIADG 461
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
340-475 |
7.51e-04 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 43.22 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDG---VTAMHKVFDWANTSrrglLLFVDEADAFLRKR- 414
Cdd:PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSElIQKYLGDGpklVRELFRVAEENAPS----IVFIDEIDAIGTKRy 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 415 -STEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDER 475
Cdd:PTZ00361 294 dATSGGEKEIQRTMLELLNQLDgfDSRGDVKVIMATNRIESLDPALirPGRIDRKIEF--PNPDEK 357
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
846-983 |
8.17e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.44 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 846 AAPVAEDVIAPVVE-----VTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV--EVTPPPSAEAPLAEDV 918
Cdd:PRK07764 366 SASDDERGLLARLErlerrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAapQPAPAPAPAPAPPSPA 445
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 919 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 983
Cdd:PRK07764 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
910-1026 |
8.83e-04 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 42.87 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 910 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 989
Cdd:PRK12373 208 ASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPV-----PPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPV 282
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965687 990 PPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 1026
Cdd:PRK12373 283 SGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| EntF |
COG1020 |
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ... |
676-1070 |
8.95e-04 |
|
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440643 [Multi-domain] Cd Length: 1329 Bit Score: 43.69 E-value: 8.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 676 VIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDV 755
Cdd:COG1020 920 VPEAGAAAAAALLRLALALLLPPYMVPAAVVLLLPLPLTGNGKLDRLALPAPAAAAAAAAAAPPAEEEEEEAALALLLLL 999
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 756 IAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSEEAVAAAPLVQDVIAPVV 835
Cdd:COG1020 1000 VVVVGDDDFFFFGGGLGLLLLLALARAARLLLLLLLLLLLFLAAAAAAAAAAAAAAAAAAAAPLAAAAAPLPLPPLLLSL 1079
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 836 EVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 915
Cdd:COG1020 1080 LALLLALLLLLALLALLALLLLLLLLLLLLALLLLLALLLALLAALRARRAVRQEGPRLRLLVALAAALALAALLALLLA 1159
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 916 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 995
Cdd:COG1020 1160 AAAAAAELLAAAALLLLLALLLLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLAAAAAALLALALLLA 1239
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 996 APLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASA 1070
Cdd:COG1020 1240 LLALAALLALAALAALAAALLALALALLALALLLLALALLLPALARARAARTARALALLLLLALLLLLALALALL 1314
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
738-964 |
9.28e-04 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 43.08 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 738 PPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPS 817
Cdd:COG0515 255 YQSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAA 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 818 EEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 897
Cdd:COG0515 335 ALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAA 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965687 898 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 964
Cdd:COG0515 415 AAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALAAAAAAAALAL 481
|
|
| FliJ |
COG2882 |
Flagellar biosynthesis chaperone FliJ [Cell motility]; |
69-185 |
9.38e-04 |
|
Flagellar biosynthesis chaperone FliJ [Cell motility];
Pssm-ID: 442129 [Multi-domain] Cd Length: 142 Bit Score: 40.66 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETKQHQARAQYQDklaRQRYEDQLRQ---QQIL 145
Cdd:COG2882 11 LDLAEKEEDEAARELGQAQQALEQAEEQL--EQLEQYREEYEQRLQQKLQQGLSAAQLRN---YQQFIARLDEaieQQQQ 85
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965687 146 NEENLRKQEESVQK--QEAMRK-ATIEHEMElRHKNELLRIEA 185
Cdd:COG2882 86 QVAQAEQQVEQARQawLEARQErKALEKLKE-RRREEERQEEN 127
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-214 |
9.66e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 9.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 71 LARMQEQSTQ----LEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRyeDQLRQQQiln 146
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL--EELRLEL--- 276
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 147 eENLRKQEESVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:COG1196 277 -EELELELEEAQAEEYELLAELA-RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
953-1021 |
1.10e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.07 E-value: 1.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 953 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 1021
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
50-210 |
1.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQI-RIQGEERRKTLNEETKQhQARAQYQD 128
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERE-RRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 129 KLA---------RQRYEDQLRQ-QQILneENLRKQEESVQKQEAMRKATIEhemelRHKNELLRIEAEskaRARVERENA 198
Cdd:COG4913 367 LLAalglplpasAEEFAALRAEaAALL--EALEEELEALEEALAEAEAALR-----DLRRELRELEAE---IASLERRKS 436
|
170
....*....|..
gi 1712965687 199 DIIREQIRLKAA 210
Cdd:COG4913 437 NIPARLLALRDA 448
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
873-988 |
1.12e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 43.01 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 873 AEDVAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTpppS 951
Cdd:PRK14954 394 APEPDLPQPDRHPGPAKpEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQASAPRNVASGKPGVDLG---S 465
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965687 952 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 988
Cdd:PRK14954 466 WQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAEL 502
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
620-1092 |
1.13e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 43.18 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 620 AEVAAPQIQDVITQVLEAMPPPsveaaAPQAQDVATPIAEVtpppsvevepplvpdviapivevtPPPSEEAVAAAPLVQ 699
Cdd:PRK14949 372 AEISLPEGQTPSALAAAVQAPH-----ANEPQFVNAAPAEK------------------------KTALTEQTTAQQQVQ 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 700 dvitpvVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEavaaaaaplvQDVIapvveVTPPPSEEAAAAAPLVQD 779
Cdd:PRK14949 423 ------AANAEAVAEADASAEPADTVEQALDDESELLAALNAE----------QAVI-----LSQAQSQGFEASSSLDAD 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 780 VIApVVEVAPPPSEEAVaaapvaedviaPVVEVTPPPSEEAVAAAPLVQDVIAP---VVEVTPPPSEEAAAPVAEDViAP 856
Cdd:PRK14949 482 NSA-VPEQIDSTAEQSV-----------VNPSVTDTQVDDTSASNNSAADNTVDdnySAEDTLESNGLDEGDYAQDS-AP 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 857 VVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED-----VAAPVVEVTPPPSA 931
Cdd:PRK14949 549 LDAYQDDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDdildaVLAARDSLLSDLDA 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 932 EAPLAEDVAAPVVEVTP--PPSAEAPlaedVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 1009
Cdd:PRK14949 629 LSPKEGDGKKSSADRKPktPPSRAPP----ASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVP 704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 1010 TP---PPSVEAPlaEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVkaEPASETEHLAQPAASAET-EAKMKKEDKTVSP 1085
Cdd:PRK14949 705 DPydrPPWEEAP--EVASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQPQVQAEAQSPAsTTALTQTSSEVQD 780
|
....*..
gi 1712965687 1086 PKDGTPV 1092
Cdd:PRK14949 781 TELNLVL 787
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
940-1087 |
1.14e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.93 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 940 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPL 1019
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 1020 AEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPK 1087
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-215 |
1.15e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 75 QEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNE-ETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLR 151
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEElEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 152 KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESK-----ARARVERENADIIREQIRLKAAEHRQT 215
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeleAQIEQLKEELKALREALDELRAELTLL 815
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
814-1005 |
1.16e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 814 PPPSEEAVAAAPLVQDVIAPVVEVT--PPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEA 891
Cdd:PHA03307 44 VSDSAELAAVTVVAGAAACDRFEPPtgPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 892 PLaedvaapvvevtPPPSAEAPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 971
Cdd:PHA03307 124 AS------------PPPSPAPDLSEM-LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190
|
170 180 190
....*....|....*....|....*....|....
gi 1712965687 972 SAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 1005
Cdd:PHA03307 191 AEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
750-895 |
1.17e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.93 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 750 PLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVV-----EVTPPPSEEAVAA- 823
Cdd:PRK07994 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqraqGATKAKKSEPAAAs 447
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965687 824 -APLVQDVIAPVVEVTPPPSEEAAAPVAEDviAPVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAE 895
Cdd:PRK07994 448 rARPVNSALERLASVRPAPSALEKAPAKKE--AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
|
|
| SAP130_C |
pfam16014 |
Histone deacetylase complex subunit SAP130 C-terminus; |
841-1014 |
1.31e-03 |
|
Histone deacetylase complex subunit SAP130 C-terminus;
Pssm-ID: 464973 [Multi-domain] Cd Length: 371 Bit Score: 42.23 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 841 PSEEAAAPVAEDVIApvveVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAA 920
Cdd:pfam16014 15 PATEGAKPKPDIHVA----VAPPVTVAVEALPGQNSEQQTASASPPSQHPAQ-----AIPTILAPAAPPSQPSVVLSTLP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 921 PVVEVTPPpsAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPVVEVTPPPSAEAPLAE 1000
Cdd:pfam16014 86 AAMAVTPP--IPASMANVVAPP-----TQPAASSTAACAVSSVLPEIKIKQEAE-PMDTSQSVPPLTPTSISPALTSLAN 157
|
170
....*....|....
gi 1712965687 1001 DVAAPVVEVTPPPS 1014
Cdd:pfam16014 158 NLSVPAGDLLPGAS 171
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
56-194 |
1.34e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 56 AKDLDKSRHAKEALDLARMQEQstQLEHQSKIKEYEAavEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRY 135
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQK--QAAEQERLKQLEK--ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 136 EDQLRQ-----QQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVE 194
Cdd:PRK09510 150 EAEAKRaaaaaKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAkKKAEAEAKKKAAAE 214
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
44-210 |
1.38e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.55 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 44 FDPTGLERAAQAAKDLDKSRHAKEALdlarMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG2268 186 LDALGRRKIAEIIRDARIAEAEAERE----TEIAIAQANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETAR 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 124 AQyQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRK-ATIEHEMELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:COG2268 262 AE-AEAAYEIAEANAEREVQRQLEIAEREREIELQEKEAEREeAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEA 340
|
....*...
gi 1712965687 203 EQIRLKAA 210
Cdd:COG2268 341 EGKRALAE 348
|
|
| CCDC66 |
pfam15236 |
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil ... |
73-188 |
1.47e-03 |
|
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Pssm-ID: 434558 [Multi-domain] Cd Length: 154 Bit Score: 40.55 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 73 RMQEQSTQLEHQSKIKEyeaaveqlkgdqiriQGEERRKTLNEETKQHQARAQYQD-KLARQ------RYEDQLRQQQIL 145
Cdd:pfam15236 47 RERKRQKALEHQNAIKK---------------QLEEKERQKKLEEERRRQEEQEEEeRLRREreeeqkQFEEERRKQKEK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965687 146 NEENLRKQEESVQkqeAMRKAtieHEMELRHKNELLRIEAESK 188
Cdd:pfam15236 112 EEAMTRKTQALLQ---AMQKA---QELAQRLKQEQRIRELAEK 148
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
839-1073 |
1.56e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 839 PPPSEEAAAPvaEDVIAPVVEVTPplAVEVEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTPP---PSAEAPLA 915
Cdd:PHA03247 278 PPPPPEAAAP--NGAAAPPDGVWG--AALAGAPLALPAPPDP---PPPAPAGDAEEEDDEDGAMEVVSPlprPRQHYPLG 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 916 -EDVAAPVVevTPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 994
Cdd:PHA03247 351 fPKRRRPTW--TPPSSLEDLSAGRHHPKR---ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPA 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 995 EAPLAEDvaapvvevTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDgldsDNTVKAEPASETEHLAQPAASAETE 1073
Cdd:PHA03247 426 SAPPPPA--------TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPD----DATRKALDALRERRPPEPPGADLAE 492
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
79-177 |
1.64e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 41.89 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 79 TQLEHQSKIKEYEAAVEQLKGDQIRIQgeerRKTLNEETKQHQARAQYQDKlarqRYEDQLRQ--------QQILNEENL 150
Cdd:pfam02841 193 LQTDQALTAKEKAIEAERAKAEAAEAE----QELLREKQKEEEQMMEAQER----SYQEHVKQliekmeaeREQLLAEQE 264
|
90 100
....*....|....*....|....*..
gi 1712965687 151 RKQEESVQKQEAMRKATIEHEMELRHK 177
Cdd:pfam02841 265 RMLEHKLQEQEELLKEGFKTEAESLQK 291
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
566-714 |
1.75e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.72 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 566 LHAEEEAQAKTLTPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEA 645
Cdd:PRK10811 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITES 934
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 646 AAPQAQDVA---TPIAEVTPPPSVEVEPPLVPDVIA--PIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSE 714
Cdd:PRK10811 935 DVAVAQEVAehaEPVVEPQDETADIEEAAETAEVVVaePEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
865-1022 |
1.84e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 865 AVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV-----EVTPPPSAEAPLAED------VAAPVVEVTPPPSAEA 933
Cdd:PHA03307 53 VTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWslstlAPASPAREGSPTPPGpsspdpPPPTPPPASPPPSPAP 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 934 PLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEvTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 1013
Cdd:PHA03307 133 DLSEM-LRPVGSPGPPPAASPPAAGASPAAVAS-DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS 210
|
....*....
gi 1712965687 1014 SVEAPLAED 1022
Cdd:PHA03307 211 SPISASASS 219
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
107-313 |
1.89e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 42.42 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 107 EERRKTLNEETKQHQARAQY-----QDKLARQRYEDQLRQQQILNEENLRKQEesVQKQEAMRKATIEHEMELRHKNELL 181
Cdd:PTZ00266 407 DDRKYPQDGATHCHAVNGHYggrvdKDHAERARIEKENAHRKALEMKILEKKR--IERLEREERERLERERMERIERERL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 182 ---RIEAESKARARVERENADIIR-------EQIRLKAAEHRQTVLESIK---TAGAVFGEGfrafvsdwdkvtATVAGL 248
Cdd:PTZ00266 485 ereRLERERLERDRLERDRLDRLErervdrlERDRLEKARRNSYFLKGMEnglSAGGGPGDG------------PGVGAG 552
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 249 TLLAVGVYSARNATGV-AGRYIEARLGKPSLVRETSRFTVGEAIKHPVKtvKRLKSKPQDALEGVV 313
Cdd:PTZ00266 553 VGAGVGTSDGRNHSGVrSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVH--DSMRSGVHDSLRGGV 616
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
707-936 |
1.92e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.17 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 707 EVTPPPSEEAVAAAAAPlvqdVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQ-DVIAPVV 785
Cdd:PRK12323 371 GAGPATAAAAPVAQPAP----AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQaSARGPGG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 786 EVAPPPSEEavaAapvaedviAPVVEVTPPPSEEAVAAAPLVQdviapvvevTPPPSEEAAAPVAEDVIAPVVEVTPP-L 864
Cdd:PRK12323 447 APAPAPAPA---A--------APAAAARPAAAGPRPVAAAAAA---------APARAAPAAAPAPADDDPPPWEELPPeF 506
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1712965687 865 AVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 936
Cdd:PRK12323 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP----APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
899-1018 |
2.13e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 41.21 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 899 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 978
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965687 979 EDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAP 1018
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
899-1026 |
2.21e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 899 APVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPvvEVTPPPsAEAPLAEdvAAPVVEVTPPPSAEAPLA 978
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAA---APAPAAAAPAAAAAPAP--AAAPQP-APAPAPA--PAPPSPAGNAPAGGAPSP 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1712965687 979 EDVAAPVVEVTPPP-SAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 1026
Cdd:PRK07764 457 PPAAAPSAQPAPAPaAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
855-976 |
2.34e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 41.68 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 855 APVVEVTPPLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 934
Cdd:NF040712 200 ATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGE 279
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965687 935 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 976
Cdd:NF040712 280 PPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
895-1039 |
2.42e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 41.29 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 895 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAplaedvaapVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 974
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPA---------TDSDPAEAGTPDDLASARRRRAGVEQPEDEPV 260
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965687 975 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVK 1039
Cdd:NF040712 261 GPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPK 325
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
342-360 |
2.44e-03 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440233 [Multi-domain] Cd Length: 583 Bit Score: 41.95 E-value: 2.44e-03
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-222 |
2.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG------DQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriraleQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 124 AQYQDKLARQRYEDQLRQQQ-----ILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLR--IEAESKARARVERE 196
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*..
gi 1712965687 197 NADIIREQIRLKAAEH-RQTVLESIKT 222
Cdd:COG4942 180 LAELEEERAALEALKAeRQKLLARLEK 206
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
840-1036 |
2.72e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 840 PPSEEAAAPVAEDVIAPVVEVTP-PLAVEVEAPLAEDVAAPVVEVTPPPSAEAPLAED-VAAPVVEVTPPPSAEAPLAED 917
Cdd:PHA03378 608 PPTTQSHIPETSAPRQWPMPLRPiPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTwTQIGHIPYQPSPTGANTMLPI 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 918 VAAPVvEVTPPPSAEAPLAEDVAAPVvEVTPPPSAEAPLAEDVAAPVvEVTPPPSAEAPLAEDVAAPVvEVTPPPSAEAP 997
Cdd:PHA03378 688 QWAPG-TMQPPPRAPTPMRPPAAPPG-RAQRPAAATGRARPPAAAPG-RARPPAAAPGRARPPAAAPG-RARPPAAAPGR 763
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1712965687 998 LAEDVAAPVVEV-TPPPSV-EAPLAEDVAAPVveVTPPPSA 1036
Cdd:PHA03378 764 ARPPAAAPGAPTpQPPPQApPAPQQRPRGAPT--PQPPPQA 802
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
75-221 |
3.17e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 75 QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyqdklARQRYEDQLRQQQI---------- 144
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIameisrmrel 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 145 --LNEENLRKQEESVQKQEAMRKATIEHE------MELRHKNELLRIEAESKARARVERENADIIREQIRLKAAE-HRQT 215
Cdd:pfam17380 381 erLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQ 460
|
....*.
gi 1712965687 216 VLESIK 221
Cdd:pfam17380 461 QVERLR 466
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
121-360 |
3.45e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 41.29 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 121 QARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERE---- 196
Cdd:COG1401 2 LRPVLEFKFLIVGLRLKPLESEDAVRELGIRADDLRGAAELATRLAERLSEELLRADRAARATELVEELSAALEVVvlll 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 197 -----NADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1401 82 dlekvELNEKLALSEAAVAIEELYELEADSEIEAVGLLLELAERSDALEALERARLLLELADLEERAALETEVLEALEAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 272 RLG----KPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEGVVlsptlEERVRDVAIATRNTRqnnglyrNILMYGP 347
Cdd:COG1401 162 LEEllaaPEDLSADALAAELSAAEELYSEDLESEDDYLKDLLREKF-----EETLEAFLAALKTKK-------NVILAGP 229
|
250
....*....|...
gi 1712965687 348 PGTGKTLFAKKLA 360
Cdd:COG1401 230 PGTGKTYLARRLA 242
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
807-1070 |
3.52e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 807 APVVEVTPPPSEEAVAAAPLVQDVIAPVV---EVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEDVAAPvvev 883
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAapqPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP---- 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 884 tPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP------------------------------------ 927
Cdd:PRK07764 475 -EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPeilaavpkrsrktwaillpeatvlgvrgdtlvlgfs 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 928 -PPSAEAPLAEDVAAPVVEV----------------TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 990
Cdd:PRK07764 554 tGGLARRFASPGNAEVLVTAlaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 991 PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASA 1070
Cdd:PRK07764 634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
887-973 |
3.73e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.52 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 887 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 966
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965687 967 VTPPPSA 973
Cdd:pfam12526 99 PPLPPPR 105
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
908-994 |
3.73e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.52 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 908 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 987
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965687 988 VTPPPSA 994
Cdd:pfam12526 99 PPLPPPR 105
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
69-220 |
3.79e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 69 LDLARMQEQSTQLEHQ-----SKIKEYEAAVEQLKGDQIRIQGE-----ERRKTLNEETKQHQAR-AQYQDKLARQRYED 137
Cdd:COG1579 10 LDLQELDSELDRLEHRlkelpAELAELEDELAALEARLEAAKTEledleKEIKRLELEIEEVEARiKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 138 QL-----------RQQQILNEENLRKQEESVQKQEAMRKAtiehemelrhKNELLRIEAESKA-RARVERENADIIREQI 205
Cdd:COG1579 90 EYealqkeieslkRRISDLEDEILELMERIEELEEELAEL----------EAELAELEAELEEkKAELDEELAELEAELE 159
|
170
....*....|....*
gi 1712965687 206 RLKAAehRQTVLESI 220
Cdd:COG1579 160 ELEAE--REELAAKI 172
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
921-1008 |
4.10e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 41.08 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 921 PVVEVTPPPSAEAPL---AEDVAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEA 996
Cdd:PRK14954 376 NDGGVAPSPAGSPDVkkkAPEPDLPQPDRHPGPAKpEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQASA 450
|
90
....*....|..
gi 1712965687 997 PLAEDVAAPVVE 1008
Cdd:PRK14954 451 PRNVASGKPGVD 462
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
929-1015 |
4.31e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.13 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 929 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 1008
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965687 1009 VTPPPSV 1015
Cdd:pfam12526 99 PPLPPPR 105
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
84-221 |
4.62e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 84 QSKIKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQ--HQARAQYQDKLARQRYEDQLRQQQILN-EENLRKQEESVQKQ 160
Cdd:PRK12704 30 EAKIKEAEEEAKRIL-EEAKKEAEAIKKEALLEAKEeiHKLRNEFEKELRERRNELQKLEKRLLQkEENLDRKLELLEKR 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965687 161 eamrkatiEHEMELRHKNELLRIEAESKARARVERenadIIREQIR-------LKAAEHRQTVLESIK 221
Cdd:PRK12704 109 --------EEELEKKEKELEQKQQELEKKEEELEE----LIEEQLQelerisgLTAEEAKEILLEKVE 164
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
341-359 |
4.85e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 39.44 E-value: 4.85e-03
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
878-996 |
4.86e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.52 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 878 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 957
Cdd:NF040712 206 AREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGA 285
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965687 958 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 996
Cdd:NF040712 286 AETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
341-414 |
5.49e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 38.95 E-value: 5.49e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 341 NILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGRDGvTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19526 29 GILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNkyIGASE-QNVRDLFSRAQ-SAKPCILFFDEFDSIAPKR 102
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
814-955 |
5.50e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 814 PPPSEEAVAAAPLVQDVIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPLAVEVEAPLAEdvAAPVVEVTPPPSAEAPL 893
Cdd:PRK13108 298 REPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGE--STPAVEETSEADIEREQ 375
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965687 894 AEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAP 955
Cdd:PRK13108 376 PGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPdeLAVAGP 437
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
342-362 |
5.77e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.58 E-value: 5.77e-03
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
878-997 |
6.54e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.14 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 878 APVVEVTPPPSAEAPLA--EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 955
Cdd:NF040712 200 ATVPRLAREPADARPEEvePAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGE 279
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965687 956 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 997
Cdd:NF040712 280 PPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
911-1036 |
7.13e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 911 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 990
Cdd:PRK07764 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAA---APAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965687 991 PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 1036
Cdd:PRK07764 459 AAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-213 |
7.24e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSK-IKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLE-ERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 128 DKLARQryedqlrqqqilnEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAeSKARARVERENADIIREQIRL 207
Cdd:TIGR02168 775 EELAEA-------------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRL 840
|
....*.
gi 1712965687 208 KAAEHR 213
Cdd:TIGR02168 841 EDLEEQ 846
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
874-1013 |
7.58e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.75 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 874 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAplaedvaapvvevTPPPSAEAPLAEDVAAPVVEVTPPPSAE 953
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPA-------------TDSDPAEAGTPDDLASARRRRAGVEQPE 256
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 954 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP 1013
Cdd:NF040712 257 DEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARP 316
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
918-1079 |
7.62e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.96 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 918 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvtpppSAEAP 997
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKA-----EVAEV 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 998 LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSdntvKAEPASETEHLAQPAASAETEAKMK 1077
Cdd:PRK13108 341 TDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDA----EAASAAPEEPAALASEAHDETEPEV 416
|
..
gi 1712965687 1078 KE 1079
Cdd:PRK13108 417 PE 418
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
855-1011 |
7.63e-03 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 40.24 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 855 APVVEVTPPLAVEVEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPvvevTPPPSAEAP 934
Cdd:cd23959 102 APDESLGPFRAARVPNPFSA-SSSTQRETHKTAQVAPPKAEPQTAPV-----TPFGQLPMFGQHPPP----AKPLPAAAA 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965687 935 LAEDVAAPVvEVTPPPSAEAPLAEDVAAPVVEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 1011
Cdd:cd23959 172 AQQSSASPG-EVASPFASGTVSASPFATATDT---APSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATP 244
|
|
| ClpX |
COG1219 |
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein ... |
341-360 |
8.40e-03 |
|
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440832 [Multi-domain] Cd Length: 409 Bit Score: 40.03 E-value: 8.40e-03
|
| PRK13800 |
PRK13800 |
fumarate reductase/succinate dehydrogenase flavoprotein subunit; |
839-1046 |
8.43e-03 |
|
fumarate reductase/succinate dehydrogenase flavoprotein subunit;
Pssm-ID: 237512 [Multi-domain] Cd Length: 897 Bit Score: 40.22 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 839 PPPSEEAAAPVAEDVIApvveVTPPLAVEVEAPlAEDV---AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 915
Cdd:PRK13800 563 PVPELDDLPPVDRTVVP----VGQPPLHGGRAP-AEGVsraAAPATAPEPPSPRILAVLALDAPSVAELAPYLADPDPGV 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 916 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTppPSAEAPLAEdvaapVVEVTPPPSAeapLAEDVAAP--VVEVTPPPS 993
Cdd:PRK13800 638 RRTAVAVLTETTPPGFGPALVAALGDGAAAVR--RAAAEGLRE-----LVEVLPPAPA---LRDHLGSPdpVVRAAALDV 707
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965687 994 AEAPLAEDVAAPVVEVTPP------PSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGL 1046
Cdd:PRK13800 708 LRALRAGDAALFAAALGDPdhrvriEAVRALVSVDDVESVAGAATDENREVRIAVAKGL 766
|
|
| PRK11855 |
PRK11855 |
dihydrolipoamide acetyltransferase; Reviewed |
866-1032 |
8.46e-03 |
|
dihydrolipoamide acetyltransferase; Reviewed
Pssm-ID: 237000 [Multi-domain] Cd Length: 547 Bit Score: 40.19 E-value: 8.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 866 VEVEAPLAE-DVAApvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeapLAEDVAAPVV 944
Cdd:PRK11855 66 VSVGGLLAViEAAG----AAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPD-----IGEITEVEVI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 945 EVTPPP----SAEAPLAE--------DVAAPV--------VEVTPPPSAEAPLAE---DVAAPVVEVTPPPSAEAPLAED 1001
Cdd:PRK11855 137 EWLVKVgdtvEEDQSLITvetdkatmEIPSPVagvvkeikVKVGDKVSVGSLLVVievAAAAPAAAAAPAAAAPAAAAAA 216
|
170 180 190
....*....|....*....|....*....|.
gi 1712965687 1002 VAAPVVEVTPPPSVEAPLAEDVAAPVVEVTP 1032
Cdd:PRK11855 217 APAPAPAAAAAPAAAAPAAAAAPGKAPHASP 247
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
809-963 |
8.57e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 39.79 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 809 VVEVTPPPSEEAVAAAPLVQdvIAPVVEVTPPPSEEAAAPVAEDVIAPVVEVTpplAVEVE-APLAEDVAAPVvevtpPP 887
Cdd:PRK12373 174 GPVVKPGPQIGRYASEPAGG--LTSLTEEAGKARYNASKALAEDIGDTVKRID---GTEVPlLAPWQGDAAPV-----PP 243
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965687 888 SAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 963
Cdd:PRK12373 244 SEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
833-955 |
8.79e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.75 E-value: 8.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 833 PVVEVTPPPSEEAAAPVAEDVIAPVVEVTPPL-AVEVEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 911
Cdd:NF040712 198 PLATVPRLAREPADARPEEVEPAPAAEGAPATdSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDA 277
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965687 912 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 955
Cdd:NF040712 278 GEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| clpX |
PRK05342 |
ATP-dependent Clp protease ATP-binding subunit ClpX; |
341-360 |
9.44e-03 |
|
ATP-dependent Clp protease ATP-binding subunit ClpX;
Pssm-ID: 235422 [Multi-domain] Cd Length: 412 Bit Score: 39.76 E-value: 9.44e-03
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
839-1004 |
9.77e-03 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 39.58 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 839 PPPSEEAAAPVAED--VIAPVVEVTPPLAVEVeaplAEDVAAPVVEVTPPPSAEAPLAEDV----AAPVVEVTPPPSAEA 912
Cdd:PRK13108 298 REPAELAAAAVASAasAVGPVGPGEPNQPDDV----AEAVKAEVAEVTDEVAAESVVQVADrdgeSTPAVEETSEADIER 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965687 913 PLAEDVAApvvevtpppsaEAPLAEDVAAPVVEVTP-PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 991
Cdd:PRK13108 374 EQPGDLAG-----------QAPAAHQVDAEAASAAPeEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPA 442
|
170
....*....|...
gi 1712965687 992 PSAEAPLAEDVAA 1004
Cdd:PRK13108 443 EPDGIRRQDDFSS 455
|
|
| |
