|
Name |
Accession |
Description |
Interval |
E-value |
| ATAD3_N |
pfam12037 |
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal ... |
35-280 |
9.62e-137 |
|
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal domain of ATPase family AAA domain-containing protein 3 (ATAD3) which is involved in dimerization and interacts with the inner surface of the outer mitochondrial membrane. This domain is found associated with the AAA ATPase domain (pfam00004). ATAD3 is essential for mitochondrial network organization, mitochondrial metabolism and cell growth at organizm and cellular level. It may also play an important role in mitochondrial protein synthesis.
Pssm-ID: 463442 [Multi-domain] Cd Length: 264 Bit Score: 410.91 E-value: 9.62e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 35 DKPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLN 114
Cdd:pfam12037 14 DKPRTAYSGFDPEALERAAKAARELESSPHAKKALELMKKQEQTRQAELQAKIKEYEAAQEQLKIERQRVEYEERRKTLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 115 EETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-----KATIEHEMELRHKNELLRIEAESKA 189
Cdd:pfam12037 94 EETKQKQQRAQYQDELARKRYQDQLEAQRRRNEELLRKQEESVAKQEAMRiqaqrRQTEEHEAELRRETERAKAEAEAEA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 190 RARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYI 269
Cdd:pfam12037 174 RAKEERENEDLNLEQLREKANEERETVLESINTAGSHIGGGLRALLTDWDKLVAAVGGLTALAAGVYTAKEGTGVAWRYI 253
|
250
....*....|.
gi 1712965703 270 EARLGKPSLVR 280
Cdd:pfam12037 254 EARLGKPSLVR 264
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
318-467 |
9.16e-108 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 330.64 E-value: 9.16e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSR 397
Cdd:cd19512 1 LEARVRDIAIATRNTKKNKGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAIHKVFDWANTSR 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 398 RGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:cd19512 81 RGLLLFVDEADAFLRKRSTEKISEDLRAALNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEMVEF 150
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
318-467 |
1.02e-37 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 138.57 E-value: 1.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTS 396
Cdd:cd19481 5 LREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVgESEKNLRKIFERARRL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 397 RRGLLLFvDEADAFLRKRSTEKISEDLRATLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAIND--RIDEIVNF 467
Cdd:cd19481 85 APCILFI-DEIDAIGRKRDSSGESGELRRVLNQLLTELdgVNSRSKVLVIAATNRPDLLDPALLRpgRFDEVIEF 158
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
309-563 |
1.51e-29 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 118.06 E-value: 1.51e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 309 LEGVVLSPTLEERVRDVaiaTRNTRQNNGLY-------RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR- 380
Cdd:COG1223 1 LDDVVGQEEAKKKLKLI---IKELRRRENLRkfglwppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSL--IGSy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 381 --DGVTAMHKVFDWANtsRRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAIN 458
Cdd:COG1223 76 lgETARNLRKLFDFAR--RAPCVIFFDEFDAIAKDRGDQNDVGEVKRVVNALLQELDGLPSGSVVIAATNHPELLDSALW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 459 DRIDEIVNFALPGPDERDRLVRLYFDKYVLEpatggrqrmklaqFDYIAKcsEIAKRTEGMSGREISKLGVAWQAAAYSS 538
Cdd:COG1223 154 RRFDEVIEFPLPDKEERKEILELNLKKFPLP-------------FELDLK--KLAKKLEGLSGADIEKVLKTALKKAILE 218
|
250 260
....*....|....*....|....*
gi 1712965703 539 EDGVLTEAMIDArvddAVKQHRQKM 563
Cdd:COG1223 219 DREKVTKEDLEE----ALKQRKERK 239
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
154-558 |
5.27e-29 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 120.40 E-value: 5.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 154 EESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRA 233
Cdd:COG0464 4 LLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 234 FVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEARLGKPSLVRETSRFTVGEAIKHPVKTVKRLKSkpqDALEGVV 313
Cdd:COG0464 84 ALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELRE---AILDDLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 314 LSPTLEERVRDVAIATRN---TRQNNGLY--RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGRD-GVTA-- 385
Cdd:COG0464 161 GLEEVKEELRELVALPLKrpeLREEYGLPppRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDL--VSKYvGETEkn 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 386 MHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKiSEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIV 465
Cdd:COG0464 239 LREVFDKARGLAPCVLFI-DEADALAGKRGEVG-DGVGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEII 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 466 NFALPGPDERDRLVRLYFDKYVLEPAtggrqrmklaqfdyiAKCSEIAKRTEGMSGREISKLGV-AWQAAAYSSEDGVLT 544
Cdd:COG0464 317 FFPLPDAEERLEIFRIHLRKRPLDED---------------VDLEELAEATEGLSGADIRNVVRrAALQALRLGREPVTT 381
|
410
....*....|....*.
gi 1712965703 545 EAMIDA--RVDDAVKQ 558
Cdd:COG0464 382 EDLLEAleREDIFLKR 397
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
342-467 |
4.03e-22 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 93.04 E-value: 4.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEKIS 420
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVgESEKRLRELFEAAKKLAPC-VIFIDEIDALAGSRGSGGDS 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965703 421 EDLRaTLNAFLYRT-GEQSN--KFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:pfam00004 80 ESRR-VVNQLLTELdGFTSSnsKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
342-564 |
2.67e-21 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 96.23 E-value: 2.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKI 419
Cdd:COG1222 115 VLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSKyiG-EGARNVREVFELAREKAPSIIFI-DEIDAIAARRTDDGT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 420 SEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYfdkyvlepatggR 495
Cdd:COG1222 193 SGEVQRTVNQLLAELdGFESRGDVLIIaATNRPDLLDPALlrPGRFDRVIEVPLPDEEAREEILKIH------------L 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 496 QRMKLA-QFDYiakcSEIAKRTEGMSGREISKlgVAWQAAAYSSEDGVLTEAMIDarVDDAVKQHRQKMD 564
Cdd:COG1222 261 RDMPLAdDVDL----DKLAKLTEGFSGADLKA--IVTEAGMFAIREGRDTVTMED--LEKAIEKVKKKTE 322
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
731-923 |
1.44e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 71.99 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 731 PVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVV 810
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 811 EvtpPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVvAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVA 890
Cdd:PRK10811 926 E---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965703 891 APVVEVTPPPS---AEAPLAEdvaAPVVEVTPPPSV 923
Cdd:PRK10811 1002 APAQVPEATVEhnhATAPMTR---APAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
821-994 |
2.86e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 71.22 E-value: 2.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 821 PLAEDVAAPVVEVTPPP--SAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 894
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEevQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 895 EVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPsaevkctlsdgldsdntVKAEPASETEHLAQ 973
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPE-----------------VVAQPAAPVVAEVA 988
|
170 180
....*....|....*....|.
gi 1712965703 974 PAASAETEAKMKKEDKTVSPP 994
Cdd:PRK10811 989 AEVETVTAVEPEVAPAQVPEA 1009
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
782-941 |
3.48e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 70.84 E-value: 3.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDviAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIE-VTPPPSA 860
Cdd:PRK10811 853 VQVEEQREAEEVQVQPVVAEVPV--AAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAApVTEQPQV 930
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 861 EVPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTP 940
Cdd:PRK10811 931 ITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009
|
.
gi 1712965703 941 P 941
Cdd:PRK10811 1010 T 1010
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
681-879 |
2.02e-11 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 68.14 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 681 VEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAaaaplVQDVIAPVVEVTPPPSEEAVAAAAAPLVqdVIAPVV 760
Cdd:PRK10811 853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----AEVVEEPVVVAEPQPEEVVVVETTHPEV--IAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 761 EVTPPPSEEAAAAAPLVQDVIAPVVEVAPppseeavaaapvAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 840
Cdd:PRK10811 926 EQPQVITESDVAVAQEVAEHAEPVVEPQD------------ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET 993
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965703 841 PPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPP 879
Cdd:PRK10811 994 VTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEA 1032
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
339-469 |
3.36e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.16 E-value: 3.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 339 YRNILMYGPPGTGKTLFAKKLAMHSG--------MDYAIMTGGDVapMGRDGVTAMHKVFDWANTSRRGLLLFVDEADAF 410
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFrpgapflyLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 411 lrkrsTEKISEDLRATLNAFLYRTGEQSNkFMLVLASNQPE--QFDWAINDRIDEIVNFAL 469
Cdd:cd00009 97 -----SRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPLlgDLDRALYDRLDIRIVIPL 151
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
783-947 |
3.89e-11 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 67.37 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 783 PVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIE---VTPPPS 859
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHpevIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 860 AEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlAEDVAAPVVEVT 939
Cdd:PRK10811 926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE-TVTAVEPEVAPA 1004
|
....*...
gi 1712965703 940 PPPSAEVK 947
Cdd:PRK10811 1005 QVPEATVE 1012
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
702-894 |
2.82e-10 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 64.68 E-value: 2.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 702 ITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAaaaplVQDVIAPVVEVTPPPSEEAAAAAPLVQDVI 781
Cdd:PRK10811 847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----AEVVEEPVVVAEPQPEEVVVVETTHPEVIA 921
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAE 861
Cdd:PRK10811 922 APVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAPVVAEVAAEVETVTAVEP 999
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965703 862 VPLAEDVAAPVVE--VTPPPSAEAPLAEDVAAPVV 894
Cdd:PRK10811 1000 EVAPAQVPEATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
248-574 |
3.07e-10 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 64.29 E-value: 3.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 248 LTLLAVGVYSARNATGVAGRyiearlGKPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEgvvlsptLEERVRDvai 327
Cdd:PRK10733 110 LLLIGVWIFFMRQMQGGGGK------GAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAE-------LVEYLRE--- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 328 ATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRD-GVTAMHKVFDWANTSRRgLLLFVDE 406
Cdd:PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGvGASRVRDMFEQAKKAAP-CIIFIDE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 407 ADAFLRKRST--EKISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVR 480
Cdd:PRK10733 253 IDAVGRQRGAglGGGHDEREQTLNQMLVEMdGFEGNEGIIVIaATNRPDVLDPALlrPGRFDRQVVVGLPDVRGREQILK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 481 LYFDKYVLEPATggrqrmklaqfdyiaKCSEIAKRTEGMSGREISKLgvAWQAAAYSSEDGVLTEAMID---ARVDDAVK 557
Cdd:PRK10733 333 VHMRRVPLAPDI---------------DAAIIARGTPGFSGADLANL--VNEAALFAARGNKRVVSMVEfekAKDKIMMG 395
|
330
....*....|....*..
gi 1712965703 558 QHRQKMDWLHAEEEAQA 574
Cdd:PRK10733 396 AERRSMVMTEAQKESTA 412
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
340-457 |
3.17e-10 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 59.94 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRdGVTAmHKVFDWANTSRRG--LLLFVDEADAFLRKRSTE 417
Cdd:cd19501 38 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV-GVGA-SRVRDLFEQAKKNapCIVFIDEIDAVGRKRGAG 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965703 418 KI-SEDLR-ATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19501 116 LGgGHDEReQTLNQLLVEMdGFESNTGVIVIaATNRPDVLDPAL 159
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
815-945 |
6.38e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 63.19 E-value: 6.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 815 PPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 894
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 895 EVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlAEDVAAPVVEVTPPPSAE 945
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEE 493
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
782-935 |
7.32e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 61.89 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE 861
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAA 282
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvaaPVVEVTPPPSVEAPLAEDVAAPV 935
Cdd:PTZ00436 283 APPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP-------PAKAATPPAKAAAPPAKAAAAPV 349
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
337-460 |
1.29e-09 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 58.13 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 337 GLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVA--PMGrDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19509 30 GPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVskWVG-ESEKIVRALFALAR-ELQPSIIFIDEIDSLLSER 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965703 415 STEKiSEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19509 108 GSGE-HEASRRVKTEFLVQmdgvLNKPEDRVLVLGATNRPWELDEAFLRR 156
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
788-999 |
3.17e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 61.05 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 788 APPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAED 867
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 868 VAAPVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSVEAPLAEDVAAPVVEVTPPPSAEVK 947
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADD---DPPPWEELPPEFASPAPAQPDAAPAGWVAE 524
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1712965703 948 CTLSDGldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 999
Cdd:PRK12323 525 SIPDPA-----TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
340-470 |
5.39e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 5.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLA------------------MHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSRRGlL 401
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALArelgppgggviyidgediLEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-V 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 402 LFVDEADAFLRKRSTEKISEDLRATLNAFLyrtgEQSNKFMLVLASNQPEQFDWA-INDRIDEIVNFALP 470
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
842-1000 |
5.66e-09 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 60.44 E-value: 5.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 842 PLAEDVVAPVIEVTPPPSAEVP--LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 915
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQpvVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 916 EVTPP-PSVEAPLAEDVAAPVVEVTPPPSAEVKCTlsdgldSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPP 994
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIE------EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
|
....*.
gi 1712965703 995 KDGTPV 1000
Cdd:PRK10811 1000 EVAPAQ 1005
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
807-982 |
8.86e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 59.48 E-value: 8.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 807 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 886
Cdd:PRK07003 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAV----TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDA 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 887 EDVAAPV-----VEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVK 961
Cdd:PRK07003 443 ADGDAPVpakanARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522
|
170 180
....*....|....*....|.
gi 1712965703 962 AEPASETEHLAQPAASAETEA 982
Cdd:PRK07003 523 AAAAPPAPEARPPTPAAAAPA 543
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
342-457 |
1.59e-08 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 54.80 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKIS 420
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYvGESERAVRQVFQRARASAPCVIFF-DEVDALVPKRGDGGSW 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965703 421 EDLRaTLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19530 112 ASER-VVNQLLTEMdgLEERSNVFVIAATNRPDIIDPAM 149
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
340-457 |
2.46e-08 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 54.21 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19511 28 KGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKyvG-ESERAVREIFQKARQAAPC-IIFFDEIDSLAPRRGQS 105
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965703 418 KISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19511 106 DSSGVTDRVVSQLLTELDgiESLKGVVVIAATNRPDMIDPAL 147
|
|
| RecA-like_KTNA1 |
cd19522 |
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ... |
339-463 |
2.59e-08 |
|
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410930 [Multi-domain] Cd Length: 170 Bit Score: 54.61 E-value: 2.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHK-VFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19522 33 WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRlLFEMARFYAPT-TIFIDEIDSICSRRGTS 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 418 KISEDLRATLNAFLYR--------TGEQSNKFMLVL-ASNQPEQFDWAINDRIDE 463
Cdd:cd19522 112 EEHEASRRVKSELLVQmdgvggasENDDPSKMVMVLaATNFPWDIDEALRRRLEK 166
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
342-525 |
2.67e-08 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 57.15 E-value: 2.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG--------GDVAPMGRDgvtamhkVFDWANtSRRGLLLFVDEADAFLRK 413
Cdd:PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfiGEGARLVRE-------LFELAR-EKAPSIIFIDEIDAIAAK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 414 RSTEKISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI-----NDRIDEIvnfalPGPDERDRLV 479
Cdd:PRK03992 240 RTDSGTSGDrevqrtlmqLLAEMDGF-----DPRGNVKIIAATNRIDILDPAIlrpgrFDRIIEV-----PLPDEEGRLE 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965703 480 rlyfdkyVLEPATggrQRMKLAQ-FDYiakcSEIAKRTEGMSGREIS 525
Cdd:PRK03992 310 -------ILKIHT---RKMNLADdVDL----EELAELTEGASGADLK 342
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-271 |
3.13e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 130 LARQRYEDQLRQQQI-LNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLK 208
Cdd:COG1196 431 AELEEEEEEEEEALEeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965703 209 AAEHRQTVLESIKTAGAVfgegfrafVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1196 511 KAALLLAGLRGLAGAVAV--------LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-219 |
4.25e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENaDIIREQIRLKA 209
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEA 411
|
170
....*....|
gi 1712965703 210 AEHRQTVLES 219
Cdd:COG1196 412 LLERLERLEE 421
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
780-944 |
4.88e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 57.19 E-value: 4.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 780 VIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPS 859
Cdd:PRK12323 382 VAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 860 AEVPLAEDVAAPVVEVTPPPSAE---APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVV 936
Cdd:PRK12323 462 ARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541
|
....*...
gi 1712965703 937 EVTPPPSA 944
Cdd:PRK12323 542 APAPAAAP 549
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
340-467 |
4.99e-08 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 53.50 E-value: 4.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTsRRGLLLFVDEADAFLRKRSTEK 418
Cdd:cd19502 38 KGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSElVQKYIGEGARLVRELFEMARE-KAPSIIFIDEIDAIGAKRFDSG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 419 ISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNF 467
Cdd:cd19502 117 TGGDrevqrtmleLLNQLDGF-----DPRGNIKVIMATNRPDILDPALlrPGRFDRKIEF 171
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-527 |
5.05e-08 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 57.22 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIlSKWVGESEKAIREIFRKARQAAPA-IIFFDEIDAIAPARGARF 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 419 ISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVnfALPGPDERDRlvrlyFDKYVLEPatgg 494
Cdd:TIGR01243 567 DTSVTDRIVNQLLTEMdGIQELSNVVVIaATNRPDILDPALlrPGRFDRLI--LVPPPDEEAR-----KEIFKIHT---- 635
|
170 180 190
....*....|....*....|....*....|...
gi 1712965703 495 rQRMKLAQfdyIAKCSEIAKRTEGMSGREISKL 527
Cdd:TIGR01243 636 -RSMPLAE---DVDLEELAEMTEGYTGADIEAV 664
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
339-463 |
5.29e-08 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 53.71 E-value: 5.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSt 416
Cdd:cd19521 40 WSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSkwMG-ESEKLVKQLFAMARENKPS-IIFIDEVDSLCGTRG- 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965703 417 EKISEDLRATLNAFLYR---TGEQSNKFMLVLASNQPEQFDWAINDRIDE 463
Cdd:cd19521 117 EGESEASRRIKTELLVQmngVGNDSQGVLVLGATNIPWQLDSAIRRRFEK 166
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-214 |
5.39e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEH-QSKIKEYEAAVEQLKG--DQIRIQGEERRKTLNEETKQhQARAQY 126
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLelEELELELEEAQAEEYELLAE-LARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVERENADIIREQI 205
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeAELAEAEEALLEAEAELAEAEEELE 382
|
....*....
gi 1712965703 206 RLKAAEHRQ 214
Cdd:COG1196 383 ELAEELLEA 391
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-223 |
1.26e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAK-------DLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQ-H 120
Cdd:COG1196 205 LERQAEKAEryrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELElE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 121 QARAQYQDKLAR--------QRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARAR 192
Cdd:COG1196 285 EAQAEEYELLAElarleqdiARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190
....*....|....*....|....*....|.
gi 1712965703 193 VERENADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
1.58e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK--GDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 128 DKLARQ-------RYEDQLRQ-QQILNEENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENAD 199
Cdd:PTZ00121 1521 AKKADEakkaeeaKKADEAKKaEEKKKADELKKAEE-LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
170 180
....*....|....*....|..
gi 1712965703 200 IIREQIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
340-461 |
1.66e-07 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 52.04 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTG---GDvapmGRDGVTAmhkVFDWANTSRRGlLLFVDEADAFL 411
Cdd:cd19520 36 KGVLLYGPPGCGKTMLAKATAKEAGARFinlqvSSLTDkwyGE----SQKLVAA---VFSLASKLQPS-IIFIDEIDSFL 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 412 RKRStekiSEDLRATL---NAFL-----YRTGEQSnKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19520 108 RQRS----STDHEATAmmkAEFMslwdgLSTDGNC-RVIVMGATNRPQDLDEAILRRM 160
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-218 |
1.85e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLD--KSRHAKEALDLARMQEQSTQLE-----HQSKIKEYEAAVEQLKGDQIRIQgEERRKTLNEETKQHQ 121
Cdd:COG1196 294 LAELARLEQDIArlEERRRELEERLEELEEELAELEeeleeLEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADII 201
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170
....*....|....*..
gi 1712965703 202 REQIRLKAAEHRQTVLE 218
Cdd:COG1196 453 ELEEEEEALLELLAELL 469
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
783-945 |
1.91e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 55.26 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 783 PVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEV 862
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 863 PLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED---VAAPVVEVTPPPSVEAPLAEDVAAPVVEVT 939
Cdd:PRK07994 439 KKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKAtnpVEVKKEPVATPKALKKALEHEKTPELAAKL 516
|
....*.
gi 1712965703 940 PPPSAE 945
Cdd:PRK07994 517 AAEAIE 522
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
620-999 |
2.26e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.33 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 620 AEVAAPQIQDVITQVLEAMPPPSVEA---------AAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPivevTPPPSEE 690
Cdd:PHA03247 2556 PPAAPPAAPDRSVPPPRPAPRPSEPAvtsrarrpdAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP----DPPPPSP 2631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 691 AVAAAPLVQDVITPVvevtpPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEA 770
Cdd:PHA03247 2632 SPAANEPDPHPPPTV-----PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP 2706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 771 AAAAPlvqdvIAPVVEVAPPPSEEAVAAAPVAEDVIAPVvevtPPPSAEAPLAEdvAAPVVEVTPPPSAEPPLAedvVAP 850
Cdd:PHA03247 2707 TPEPA-----PHALVSATPLPPGPAAARQASPALPAAPA----PPAVPAGPATP--GGPARPARPPTTAGPPAP---APP 2772
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 851 VIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA-PVVEVTPPPSVEAPLA- 928
Cdd:PHA03247 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqPTAPPPPPGPPPPSLPl 2852
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965703 929 EDVAAPVVEVT--PPPSAEVKctlsdgldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 999
Cdd:PHA03247 2853 GGSVAPGGDVRrrPPSRSPAA-----------KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
61-218 |
2.30e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 61 KSRHAKEALDLARMQEQSTQlEHQSKIKEYEAAVEQLKGDQ-------IRIQGEERRKTLnEETKQHQARAQYQDKLARQ 133
Cdd:pfam17380 390 KNERVRQELEAARKVKILEE-ERQRKIQQQKVEMEQIRAEQeearqreVRRLEEERAREM-ERVRLEEQERQQQVERLRQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 134 RYEDQLRQQQilneeNLRKQEESVQKQEAMRKATIEHEMELRHKnellRIEAESKARARVERENAD----IIREQIRLKA 209
Cdd:pfam17380 468 QEEERKRKKL-----ELEKEKRDRKRAEEQRRKILEKELEERKQ----AMIEEERKRKLLEKEMEErqkaIYEEERRREA 538
|
....*....
gi 1712965703 210 AEHRQTVLE 218
Cdd:pfam17380 539 EEERRKQQE 547
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
782-974 |
2.86e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 54.47 E-value: 2.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPV--VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPS 859
Cdd:PRK07003 425 APPAAPAPPATADRGDDAADGDAPVPAKanARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 860 AEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV----------------AAPVVEVTPPPSV 923
Cdd:PRK07003 505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlrnagmrvssdrgaraAAAAKPAAAPAAA 584
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 924 EAPLAEDVAAPVvevtPPPSAEVKCTLSDGldsDNTVKAEPASETEHLAQP 974
Cdd:PRK07003 585 PKPAAPRVAVQV----PTPRARAATGDAPP---NGAARAEQAAESRGAPPP 628
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
342-527 |
3.19e-07 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 54.29 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTA--MHKVFDWANtSRRGLLLFVDEADAFLRKRSTE-K 418
Cdd:CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGVGAarVRDLFKKAK-ENSPCIVFIDEIDAVGRQRGAGiG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 419 ISEDLR-ATLNAFL-YRTGEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYFDKYVLEPATG 493
Cdd:CHL00176 297 GGNDEReQTLNQLLtEMDGFKGNKGVIVIaATNRVDILDAALlrPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVS 376
|
170 180 190
....*....|....*....|....*....|....
gi 1712965703 494 GRQrmklaqfdyiakcseIAKRTEGMSGREISKL 527
Cdd:CHL00176 377 LEL---------------IARRTPGFSGADLANL 395
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
52-214 |
4.25e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 52 AAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQskIKEYEAAVEQLKGDQIRIQGE--ERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEER--LEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKA 209
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
....*
gi 1712965703 210 AEHRQ 214
Cdd:COG1196 443 ALEEA 447
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
836-944 |
4.82e-07 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 53.03 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 836 PPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV 915
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAK 301
|
90 100
....*....|....*....|....*....
gi 1712965703 916 EVTPPPSVEAPLAEDVAAPVVEVTPPPSA 944
Cdd:PTZ00436 302 AAAAPAKAAAAPAKAAAPPAKAAAPPAKA 330
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
340-483 |
5.57e-07 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 53.23 E-value: 5.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRK----- 413
Cdd:PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEfVQKYLGEGPRMVRDVFRLARENAPS-IIFIDEVDSIATKrfdaq 258
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 414 ----RSTEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDERDRlvRLYF 483
Cdd:PTZ00454 259 tgadREVQRILLELLNQMDGF-----DQTTNVKVIMATNRADTLDPALlrPGRLDRKIEF--PLPDRRQK--RLIF 325
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
5.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 51 RAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVE--------QLKGDQIRIQGEERRKTlnEETKQHQA 122
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEakkkaeedKKKADELKKAAAAKKKA--DEAKKKAE 1428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 123 RAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATiehemELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-----EAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
170
....*....|....
gi 1712965703 203 --EQIRLKAAEHRQ 214
Cdd:PTZ00121 1504 kaAEAKKKADEAKK 1517
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
340-457 |
8.23e-07 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 49.80 E-value: 8.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRS--- 415
Cdd:cd19529 28 KGILLYGPPGTGKTLLAKAVATESNANFISVKGPELlSKWVGESEKAIREIFRKARQVAP-CVIFFDEIDSIAPRRGttg 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965703 416 ----TEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19529 107 dsgvTERVVNQLLTELDGL-----EEMNGVVVIAATNRPDIIDPAL 147
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
60-221 |
1.00e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 52.65 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 60 DKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyQDKLARQRYEDQL 139
Cdd:pfam15709 359 EQRRLQQEQLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQ-QEEFRRKLQELQR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 140 RQQQilnEENLRKQ-EESVQKQEAMRKATiEH----EMELRHKNELLRIEAESKARARVErenadiiREQIRLKAAEHRQ 214
Cdd:pfam15709 438 KKQQ---EEAERAEaEKQRQKELEMQLAE-EQkrlmEMAEEERLEYQRQKQEAEEKARLE-------AEERRQKEEEAAR 506
|
....*..
gi 1712965703 215 TVLESIK 221
Cdd:pfam15709 507 LALEEAM 513
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-223 |
1.05e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYE---AAVEQLKGDQIRiQGEERRKTLNEETKQHQARAQY 126
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkAAEAKKKADEAK-KAEEAKKADEAKKAEEAKKADE 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 QDKLARQRYEDQLRQQqilneENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIE------------------AESK 188
Cdd:PTZ00121 1539 AKKAEEKKKADELKKA-----EELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEearieevmklyeeekkmkAEEA 1612
|
170 180 190
....*....|....*....|....*....|....*..
gi 1712965703 189 ARARVERENADIIR--EQIRLKAAEHRQTVLESIKTA 223
Cdd:PTZ00121 1613 KKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKA 1649
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
623-926 |
1.36e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.63 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 623 AAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEpplvpdviAPIVEVTPPPSEEAVAAAPLVQDVI 702
Cdd:PHA03247 2687 AARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP--------ALPAAPAPPAVPAGPATPGGPARPA 2758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 703 TPVVEVTPPPSEEAVAAAAAPlvqdviaPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIA 782
Cdd:PHA03247 2759 RPPTTAGPPAPAPPAAPAAGP-------PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 783 P-VVEVAPPPSEEAVAAAPVAEDVIAPVVEVT--PPPSAEA--------PLAEDVAAPVVEVTPPPSAEPPLA-EDVVAP 850
Cdd:PHA03247 2832 TsAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAakpaaparPPVRRLARPAVSRSTESFALPPDQpERPPQP 2911
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 851 VIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE-VTPPPSAEAPLAEDVAAPVVEVTPP-PSVEAP 926
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPaPSREAP 2989
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
340-465 |
1.43e-06 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 49.05 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSrRGLLLFVDEADAFLRKRSTeK 418
Cdd:cd19528 28 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWfGESEANVRDIFDKARAA-APCVLFFDELDSIAKARGG-N 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965703 419 ISEDLRAT---LNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIV 465
Cdd:cd19528 106 IGDAGGAAdrvINQILTEMdGMNTKKNVFIIgATNRPDIIDPAIlrPGRLDQLI 159
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-223 |
1.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 36 KPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERR----K 111
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 112 TLNEETKQHQARAQYQDKLAR--QRYEDQLRQQQILNEENLRKQE-----------ESVQKQEAMRKATIEHEMELRHKN 178
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdaKKAEAARKAEEVRKAEELRKAEdarkaeaarkaEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 179 ELLRIEAESKARARVERENADI-----------IREQIRLKAAEHRQTvlESIKTA 223
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrkfeearmahfARRQAAIKAEEARKA--DELKKA 1286
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
340-457 |
2.06e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 48.83 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRST 416
Cdd:cd19503 35 RGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSI--VSKylgESEKNLREIFEEARSHAPS-IIFIDEIDALAPKREE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965703 417 --EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19503 112 dqREVERRVVAQLLT-LMDGMSSRGKVVVIAATNRPDAIDPAL 153
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
639-983 |
2.06e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.25 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 639 PPPSVEAAAPQAqDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVV-----------E 707
Cdd:PHA03247 2592 PPQSARPRAPVD-DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrarrL 2670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 708 VTPPPSEEAVAAAAAPLVQDVIAPVVEVT-PPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEaaaaaplvqdviAPVVE 786
Cdd:PHA03247 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHALVSATPLPPGPAAARQASP------------ALPAA 2738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 787 VAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAeaplaedvaAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAE 866
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPA---------PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 867 DVAAPVVEVT---------PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA---PLAEDVAAP 934
Cdd:PHA03247 2810 AVLAPAAALPpaaspagplPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAparPPVRRLARP 2889
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1712965703 935 VVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAK 983
Cdd:PHA03247 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
340-457 |
2.08e-06 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 48.97 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:cd19519 35 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEImSKLAGESESNLRKAFEEAEKNAPA-IIFIDEIDAIAPKREKTH 113
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965703 419 ISEDLRATLNAFLYRTGEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19519 114 GEVERRIVSQLLTLMDGLKQRAHVIVMaATNRPNSIDPAL 153
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-221 |
2.46e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKsrhAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQiriqgEERRKTLNEETKQHQAR--AQY 126
Cdd:pfam13868 122 LEKQRQLREEIDE---FNEEQAEWKELEKEEEREEDERILEYLKEKAEREEER-----EAEREEIEEEKEREIARlrAQQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 QDKLARQRYEDQLRQQQILnEENLRKQEEsVQKQEAMRKATIEHEM------ELRHKNELLRIEA--ESKARARVERENA 198
Cdd:pfam13868 194 EKAQDEKAERDELRAKLYQ-EEQERKERQ-KEREEAEKKARQRQELqqareeQIELKERRLAEEAerEEEEFERMLRKQA 271
|
170 180
....*....|....*....|....*....
gi 1712965703 199 DIIR------EQIRLKAAEHRQTVLESIK 221
Cdd:pfam13868 272 EDEEieqeeaEKRRMKRLEHRRELEKQIE 300
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-232 |
2.47e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEaavEQLKGDQIRIQGEE--------RRKTLNEETKQHQ 121
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEEnkikaaeeAKKAEEDKKKAEE 1679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKAtiehEMELRHKNELLRIEAESKAR----ARVEREN 197
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA----EEENKIKAEEAKKEAEEDKKkaeeAKKDEEE 1755
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965703 198 adiiREQIRLKAAEHRQTVLESIKTAGAVFGEGFR 232
Cdd:PTZ00121 1756 ----KKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
734-945 |
2.63e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.42 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 734 EVTPPPSEEAVAAAAAPLVQdviAPVVEVTPPPSEEAAAAAplvqdviAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVT 813
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAA---APAAAAPAPAAPPAAPAA-------APAAAAAARAVAAAPARRSPAPEALAAARQAS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 814 P--PPSAEAPLAEDVAAPVVEVTPP-PSAEPPLAEDVVAPVievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVA 890
Cdd:PRK12323 441 ArgPGGAPAPAPAPAAAPAAAARPAaAGPRPVAAAAAAAPA----RAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 891 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSvEAPLAEDVAAPVVEVTPPPSAE 945
Cdd:PRK12323 517 APAGWVAESIPDPATADPDDAFETLAPAPAAA-PAPRAAAATEPVVAPRPPRASA 570
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
678-926 |
2.70e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 51.62 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 678 APIVEVTPPPSEEAVAAAPLvqdviTPVVEVTPPPSEEAVaaaaaplvQDVIAPVVEVTPPPSE--EAVAAAAAPLVQDV 755
Cdd:PRK10263 335 APVEPVTQTPPVASVDVPPA-----QPTVAWQPVPGPQTG--------EPVIAPAPEGYPQQSQyaQPAVQYNEPLQQPV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 756 IAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 835
Cdd:PRK10263 402 QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQP 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 836 PPSAEPPLAEDVvaPVIEVTPPpsAEVPL-------------AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--- 899
Cdd:PRK10263 482 QPVEQQPVVEPE--PVVEETKP--ARPPLyyfeeveekrareREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPvea 557
|
250 260
....*....|....*....|....*..
gi 1712965703 900 PSAEAPLAEDVAAPVVEVTPPPSVEAP 926
Cdd:PRK10263 558 AAAVSPLASGVKKATLATGAAATVAAP 584
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
340-461 |
2.84e-06 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 48.83 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM----GRDGVTAMHKVFDWANTSrrglLLFVDEADAFLRKRS 415
Cdd:cd19525 56 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKwvgeGEKMVRALFSVARCKQPA----VIFIDEIDSLLSQRG 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965703 416 tEKISEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19525 132 -EGEHESSRRIKTEFLVQldgaTTSSEDRILVVGATNRPQEIDEAARRRL 180
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
63-218 |
2.91e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 63 RHAKEALDLARMQ-EQSTQLEHQSKIKeYEAAVEQLKGDQIRIqgEERRKTLNEETKQHQARAQyqdklARQRYEDQLrQ 141
Cdd:pfam13868 9 RELNSKLLAAKCNkERDAQIAEKKRIK-AEEKEEERRLDEMME--EERERALEEEEEKEEERKE-----ERKRYRQEL-E 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 142 QQILNEENLRKQEESVQKQEA-MRKATIEHEMELRHKNELLRIEAESKARarveRENADIIREQIRLKAAEHRQTVLE 218
Cdd:pfam13868 80 EQIEEREQKRQEEYEEKLQEReQMDEIVERIQEEDQAEAEEKLEKQRQLR----EEIDEFNEEQAEWKELEKEEEREE 153
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
49-255 |
2.97e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKSRHAKEALD--LARMQEQSTQLEHqsKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQY 126
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEeeLEELEAELEELRE--ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEM----ELRHKNELLRIEAEskaRARVERENADIIR 202
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqqrLAELEEELEEAQEE---LEELEEELEQLEN 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965703 203 EQIRLKAAEHRQTVLESIKTAGAVFgeGFRAFVSDWDKVTATVAGLTLLAVGV 255
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALL--ALLGLGGSLLSLILTIAGVLFLVLGL 285
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-200 |
3.26e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 51 RAAQAAKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEAAveqlKGDQIRIQGEERRKTLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1662 KAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 131 ARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELlrIEAESKARARVERENADI 200
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL--DEEDEKRRMEVDKKIKDI 1803
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
782-940 |
3.80e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.00 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPpsae 861
Cdd:PRK07003 374 ARVAGAVPAPGARAAAAVGASAVPAVTAVTG-AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP---- 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSVE-----APLAEDVAAPVV 936
Cdd:PRK07003 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEP--APRAAAPSAATPAAVPDarapaAASREDAPAAAA 526
|
....
gi 1712965703 937 EVTP 940
Cdd:PRK07003 527 PPAP 530
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-211 |
4.67e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.92 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAkdlDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK------GDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 23 ERDAQIA---EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKeerkryRQELEEQIEEREQKRQEEYEEKLQE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 124 AQYQDKLARQRYEDQLRQQQILNEENLRKQEEsVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIRE 203
Cdd:pfam13868 100 REQMDEIVERIQEEDQAEAEEKLEKQRQLREE-IDEFNEEQAEWKE-LEKEEEREEDERILEYLKEKAEREEEREAEREE 177
|
....*...
gi 1712965703 204 QIRLKAAE 211
Cdd:pfam13868 178 IEEEKERE 185
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
5.23e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 51 RAAQAAKDLDKSRHAKEAldlaRMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKtLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEA----RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 131 ARQRYEDQLRQ-QQILNEENLRKQEESVQKQEAMRKATIEHEM-ELRHKNELLRIEAESKARARVERENADIIREQ---- 204
Cdd:PTZ00121 1275 EEARKADELKKaEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAeaea 1354
|
170
....*....|..
gi 1712965703 205 --IRLKAAEHRQ 214
Cdd:PTZ00121 1355 aaDEAEAAEEKA 1366
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
809-916 |
5.82e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 50.19 E-value: 5.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 809 VVE--VTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP-PPSAEVPLAEDVAAPVVEVTPPPSAEAPL 885
Cdd:PRK14950 355 VIEalLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVReTATPPPVPPRPVAPPVPHTPESAPKLTRA 434
|
90 100 110
....*....|....*....|....*....|.
gi 1712965703 886 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 916
Cdd:PRK14950 435 AIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
5.89e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 5.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 51 RAAQAAKDLDKSRHAKE---ALDL-----ARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTLNEETKQHQA 122
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEvrkAEELrkaedARKAEAARKAEEERKAEEARKAEDAKKAEAVK-KAEEAKKDAEEAKKAEEE 1248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 123 RAQYQ-DKLARQRYEDQLRQQQILNEEN------LRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVER 195
Cdd:PTZ00121 1249 RNNEEiRKFEEARMAHFARRQAAIKAEEarkadeLKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
170 180
....*....|....*....|....*.
gi 1712965703 196 ENADIIReqirlKAAEHRQTVLESIK 221
Cdd:PTZ00121 1329 KKADAAK-----KKAEEAKKAAEAAK 1349
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
6.46e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 51 RAAQAAKDLDKSRHAKEALDLaRMQEQSTQLEHQSKIKEYE----AAVEQLKGDQIRIQGEERRKTlNEETKQHQARAQY 126
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEeakkAEEDKKKAEEAKKAEEDEKKA-AEALKKEAEEAKK 1703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 QDKLARQRYEDQLRQQQILNEENLR--KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARA-RVERENADIIRE 203
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEE 1783
|
170
....*....|....*...
gi 1712965703 204 QIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIK 1801
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
836-981 |
6.95e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.10 E-value: 6.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 836 PPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPvv 915
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAP-- 438
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 916 evtppPSVEAPLAEDVAAPVVEVTPPPSAEVKctlsdgldsdntVKAEPASETEHLAQPAASAETE 981
Cdd:PRK14951 439 -----AAAPAAVALAPAPPAQAAPETVAIPVR------------VAPEPAVASAAPAPAAAPAAAR 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-223 |
7.50e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 55 AAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG-------DQIRIQGE-----ERRKTLNEETKQHQA 122
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseleeEIEELQKElyalaNEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 123 RAQY--QDKLARQRYEDQLRQQQILNEENL---RKQEESVQKQ-EAMRKATIEHEM---ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02168 310 RLANleRQLEELEAQLEELESKLDELAEELaelEEKLEELKEElESLEAELEELEAeleELESRLEELEEQLETLRSKVA 389
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965703 194 ERE------NADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:TIGR02168 390 QLElqiaslNNEIERLEARLERLEDRRERLQQEIEE 425
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-221 |
8.21e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.15 E-value: 8.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEA----LDLARMQEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 155 ERILEYLKEKAEREEEREAereeIEEEKEREIARLRAQQEKAQDEKAERDELRAKlyQEEQERKERQKEREEAEKKARQR 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 124 A------QYQDKLARQRYEDQLRQQQILNEENLRKQEEsvQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:pfam13868 235 QelqqarEEQIELKERRLAEEAEREEEEFERMLRKQAE--DEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREE 312
|
170 180
....*....|....*....|....
gi 1712965703 198 ADIIREQIRlKAAEHRQTVLESIK 221
Cdd:pfam13868 313 ELEEGERLR-EEEAERRERIEEER 335
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
619-934 |
9.13e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.08 E-value: 9.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 619 SAEVAAPQIQDVITQVLEA-----MPPPSVEAAAPqaqDVATPIAEVTPPPSVEVEPPlvpdVIAPIVEVTPPPSEEAVA 693
Cdd:PRK10263 317 TEPVAVAAAATTATQSWAApvepvTQTPPVASVDV---PPAQPTVAWQPVPGPQTGEP----VIAPAPEGYPQQSQYAQP 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 694 AAPLVQDVITPVvevtPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAA 773
Cdd:PRK10263 390 AVQYNEPLQQPV----QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 774 APLVQDVIAPVVEVAPPPseeavaaapvaedviapvvevTPPPSAEAPlaedvaAPVVEVTPPpsAEPPL---------- 843
Cdd:PRK10263 466 QTYQQPAAQEPLYQQPQP---------------------VEQQPVVEP------EPVVEETKP--ARPPLyyfeeveekr 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 844 ---AEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 920
Cdd:PRK10263 517 areREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP-LASGVKKATLATGAAATVAAPVFSLANSGGPR 595
|
330
....*....|....
gi 1712965703 921 PSVEAPLAEDVAAP 934
Cdd:PRK10263 596 PQVKEGIGPQLPRP 609
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
620-762 |
1.16e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 49.65 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 620 AEVAAPQIQDV-ITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK10811 863 EVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV 942
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 699 QDVITPVVEVTPPPSEEAVAAAAAP-LVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEV 762
Cdd:PRK10811 943 AEHAEPVVEPQDETADIEEAAETAEvVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
807-947 |
1.24e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.09 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 807 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 886
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 887 EDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDvAAPVVEVTPPPSAEVK 947
Cdd:PRK07994 442 EPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKA-TNPVEVKKEPVATPKA 499
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
340-461 |
1.35e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 46.38 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTGGDVApmgrDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKR 414
Cdd:cd19524 34 RGLLLFGPPGNGKTMLAKAVAAESNATFfnisaASLTSKYVG----EGEKLVRALFAVA-RELQPSIIFIDEVDSLLSER 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965703 415 STEKISEDLRATLNAFLYRTGEQSNKFMLVL---ASNQPEQFDWAINDRI 461
Cdd:cd19524 109 SEGEHEASRRLKTEFLIEFDGVQSNGDDRVLvmgATNRPQELDDAVLRRF 158
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
813-893 |
1.41e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 47.30 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 813 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 890
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965703 891 APV 893
Cdd:PRK11633 144 APT 146
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
782-946 |
1.45e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE 861
Cdd:PRK07764 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPL---AEDVAAPVVEV 938
Cdd:PRK07764 697 APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPapaPAAAPAAAPPP 776
|
....*...
gi 1712965703 939 TPPPSAEV 946
Cdd:PRK07764 777 SPPSEEEE 784
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
826-937 |
1.47e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.04 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 826 VAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVvevTPPPSAeaplAEDVAAPVVEVTPPPSAEAP 905
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965703 906 LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVE 937
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-214 |
1.59e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 48.38 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQsKIKEYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARaQ 125
Cdd:pfam13868 53 RERALEEEEEKEEERKEERKRYRQELEEQIEEREQK-RQEEYEEKLqerEQMDEIVERIQEEDQAEAEEKLEKQRQLR-E 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 126 YQDKLARQRYEDQLRQQQILNEENLR------KQEESVQKQEAMRK--------------ATIEHEMELRHKNELLRI-- 183
Cdd:pfam13868 131 EIDEFNEEQAEWKELEKEEEREEDERileylkEKAEREEEREAEREeieeekereiarlrAQQEKAQDEKAERDELRAkl 210
|
170 180 190
....*....|....*....|....*....|....
gi 1712965703 184 ---EAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam13868 211 yqeEQERKERQKEREEAEKKARQRQELQQAREEQ 244
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
782-904 |
1.95e-05 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 48.02 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEdviAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE 861
Cdd:PTZ00436 234 APPAKAAAAPAKAAAAPAKAAA---PPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAA 310
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 904
Cdd:PTZ00436 311 AAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKA 353
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
73-211 |
2.31e-05 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 46.08 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 73 RMQEQSTQLEHQSKikEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLA---RQRYEdqlRQQQI--LNE 147
Cdd:pfam08614 11 RLLDRTALLEAENA--KLQSEPESVLPSTSSSKLSKASPQSASIQSLEQLLAQLREELAelyRSRGE---LAQRLvdLNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 148 ENLRKQEESVQKQEAMRKATIE----------HEMELRHKNEL----------LRIE---AESKARaRVERENADIIREQ 204
Cdd:pfam08614 86 ELQELEKKLREDERRLAALEAEraqleeklkdREEELREKRKLnqdlqdelvaLQLQlnmAEEKLR-KLEKENRELVERW 164
|
....*..
gi 1712965703 205 IRLKAAE 211
Cdd:pfam08614 165 MKRKGQE 171
|
|
| flagell_FliJ |
TIGR02473 |
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly ... |
69-193 |
3.36e-05 |
|
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Pssm-ID: 131526 [Multi-domain] Cd Length: 141 Bit Score: 44.61 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETK------QHQARAQYQDKLarqryeDQLRQQ 142
Cdd:TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQL--QQLIKYREEYEQQALEKVGagtsalELSNYQRFIRQL------DQRIQQ 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1712965703 143 QILNEENLRKQEEsvQKQEAMRKATIEHEM--ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02473 80 QQQELALLQQEVE--AKRERLLEARRELKAleKLKEKKQKEYRAEEAKREQKE 130
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
641-1000 |
3.63e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.01 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 641 PSVEAAAPQAQDVATPIAEVTPPpsvevepplvPDVIAPIVEVTPPPSEeavAAAPLVQDVITPVVEVT------PPPse 714
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPA----------PSRLAPAILPDEPVGE---PVHPRMLTWIRGLEELAsddagdPPP-- 2553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 715 eAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAA-----PLVQDVIAPVVEvtPPPSEEAAAAAPLVQDVIAPvvevAP 789
Cdd:PHA03247 2554 -PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARrpdapPQSARPRAPVDD--RGDPRGPAPPSPLPPDTHAP----DP 2626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 790 PPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAP-------LAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEv 862
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP- 2705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 863 PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTP--PPSVEAPLAEdvAAPVVEVTP 940
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP-----ATPGGPARParPPTTAGPPAP--APPAAPAAG 2778
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 941 PPSAEVKCTLSDGLDSDNTVKAePASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTPV 1000
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPS-PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
827-976 |
4.23e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.55 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 827 AAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 906
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA-VPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 907 AEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVkctlsDGLDSDNTVKAEPASETEHLAQPAA 976
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEA-----YRWKATNPVEVKKEPVATPKALKKA 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-214 |
6.16e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 6.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKSRHAKEALDLARMQE-QSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTlNEETKQHQARA--Q 125
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELK-KAEEKKKA-DEAKKAEEKKKadE 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 126 YQDKLARQRYEDQLRQQQilnEENLRKQEESVQK-QEAMRKATIEHEMELRHKNELLRIEAESKArARVERENADIIREQ 204
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKA---EEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-AEKKKEEAKKKADA 1382
|
170
....*....|
gi 1712965703 205 IRLKAAEHRQ 214
Cdd:PTZ00121 1383 AKKKAEEKKK 1392
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
6.76e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 6.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKE--YEAAVEQLKGDQIRIQGEERRKTlnEETKQHQARAQYQ 127
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeaKKKAEEAKKADEAKKKAEEAKKA--DEAKKKAEEAKKK 1498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 128 DKLARQRYEDQLRQqqilneENLRKQEESvQKQEAMRKATiehemELRHKNELLRIEaeskararvERENADIIREQIRL 207
Cdd:PTZ00121 1499 ADEAKKAAEAKKKA------DEAKKAEEA-KKADEAKKAE-----EAKKADEAKKAE---------EKKKADELKKAEEL 1557
|
170
....*....|....
gi 1712965703 208 KAAEHRQTVLESIK 221
Cdd:PTZ00121 1558 KKAEEKKKAEEAKK 1571
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
53-211 |
6.78e-05 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 46.61 E-value: 6.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 53 AQAAKDLDKSRHAKEAL--DLARMQEQSTQLEHQSKIKE------YEAAVEQLK--GDQIRIQGEE-------------- 108
Cdd:PRK11637 85 SQASRKLRETQNTLNQLnkQIDELNASIAKLEQQQAAQErllaaqLDAAFRQGEhtGLQLILSGEEsqrgerilayfgyl 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 109 ---RRKTLNE--ETKQH--QARAQYQDKLARQR---YEDQLRQQQILNEENLRKQ-----EESVQKQEAMRKATIEHEME 173
Cdd:PRK11637 165 nqaRQETIAElkQTREElaAQKAELEEKQSQQKtllYEQQAQQQKLEQARNERKKtltglESSLQKDQQQLSELRANESR 244
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965703 174 LRhkNELLRIEAESKARArvEREnadiIREQIRLKAAE 211
Cdd:PRK11637 245 LR--DSIARAEREAKARA--ERE----AREAARVRDKQ 274
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
782-945 |
7.66e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.77 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAvaaapvaedviapvvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDvvapviEVTPPPSAE 861
Cdd:PRK07003 392 GASAVPAVTAVTGA-------------------AGAALAPKAAAAAAATRAEAPPAAPAPPATAD------RGDDAADGD 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 862 VPLAEDVAAPvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP 941
Cdd:PRK07003 447 APVPAKANAR---ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523
|
....
gi 1712965703 942 PSAE 945
Cdd:PRK07003 524 AAAP 527
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
816-993 |
7.74e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.83 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 816 PSAEAPLAE--DVAAPV--------VEVTPPPS----AEPPLAEDVVAPVIEV-TPPPSAEVPlaedvaAPVVeVTPPPS 880
Cdd:pfam05109 461 PASTGPTVStaDVTSPTpagttsgaSPVTPSPSprdnGTESKAPDMTSPTSAVtTPTPNATSP------TPAV-TTPTPN 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 881 AEAPLAEDVAAPVVEVTPPPSAEAPL------AEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSdGL 954
Cdd:pfam05109 534 ATSPTLGKTSPTSAVTTPTPNATSPTpavttpTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLG-GT 612
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1712965703 955 DSDNTVKAEPASET------EHLAQPAASAETEAKMKKEDKTVSP 993
Cdd:pfam05109 613 SSTPVVTSPPKNATsavttgQHNITSSSTSSMSLRPSSISETLSP 657
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
816-902 |
8.03e-05 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 43.14 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 816 PSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 895
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965703 896 VTPPPSA 902
Cdd:pfam12526 99 PPLPPPR 105
|
|
| RecA-like_fidgetin |
cd19523 |
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ... |
340-460 |
8.94e-05 |
|
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410931 [Multi-domain] Cd Length: 163 Bit Score: 44.10 E-value: 8.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG-GDVAPMGRDGVTAMHKVFDWANTsRRGLLLFVDEADAFLRKRSTE- 417
Cdd:cd19523 34 RSILLFGPRGTGKTLLGRCLASQLGATFLRLRGsTLVAKWAGEGEKILQASFLAARC-RQPSVLFISDLDALLSSQDDEa 112
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1712965703 418 ----KISEDLRATLNAFLyrtGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19523 113 spvgRLQVELLAQLDGVL---GSGEDGVLVVCTTSKPEEIDESLRRY 156
|
|
| RecA-like_Yta7-like |
cd19517 |
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ... |
340-467 |
8.95e-05 |
|
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410925 [Multi-domain] Cd Length: 170 Bit Score: 44.04 E-value: 8.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDyaimtGGDVAPMGRDGVTAMHKvfdWANTSRRGL-------------LLFVDE 406
Cdd:cd19517 35 RGVLFHGPPGTGKTLMARALAAECSKG-----GQKVSFFMRKGADCLSK---WVGEAERQLrllfeeayrmqpsIIFFDE 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 407 ADAFLRKRST--EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAIN--DRIDEIVNF 467
Cdd:cd19517 107 IDGLAPVRSSkqEQIHASIVSTLLA-LMDGLDNRGQVVVIGATNRPDALDPALRrpGRFDREFYF 170
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
341-411 |
1.02e-04 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 45.82 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 341 NILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE------- 406
Cdd:COG2256 51 SMILWGPPGTGKTTLARLIANATDAEFvalsAVT----------SGVKDIREVIEEARERRaygRRTILFVDEihrfnka 120
|
....*.
gi 1712965703 407 -ADAFL 411
Cdd:COG2256 121 qQDALL 126
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
340-457 |
1.07e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 43.93 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMD-YAIMTGGDVAPMGRDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKRST-- 416
Cdd:cd19518 35 RGVLLHGPPGCGKTMLANAIAGELKVPfLKISATEIVSGVSGESEEKIRELFDQA-ISNAPCIVFIDEIDAITPKRESaq 113
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965703 417 ----EKISEDLRATLNAFLYRtgEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19518 114 remeRRIVSQLLTCMDELNNE--KTAGGPVLVIgATNRPDSLDPAL 157
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
68-214 |
1.23e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.90 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 68 ALDLARMQEQSTQLEHQSKIkeyEAAVEQLKGDQIRIQGEERRKTLNEETKQ-HQARAQYQDKLAR--QRYEDQLRQQQI 144
Cdd:pfam07111 480 SLELEQLREERNRLDAELQL---SAHLIQQEVGRAREQGEAERQQLSEVAQQlEQELQRAQESLASvgQQLEVARQGQQE 556
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 145 LNEENLRKQEESVQKQEAMRKATIEH--EMELRHKNELlrieAESKAR---ARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam07111 557 STEEAASLRQELTQQQEIYGQALQEKvaEVETRLREQL----SDTKRRlneARREQAKAVVSLRQIQHRATQEKE 627
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-482 |
1.32e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 46.05 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRS- 415
Cdd:TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI--MSKyygESEERLREIFKEAEENAPS-IIFIDEIDAIAPKREe 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 416 -TEKISEDLRATLNAFLYRTGEQSnKFMLVLASNQPEQFDWAIN--DRIDEIVNFALPGPDERDRLVRLY 482
Cdd:TIGR01243 290 vTGEVEKRVVAQLLTLMDGLKGRG-RVIVIGATNRPDALDPALRrpGRFDREIVIRVPDKRARKEILKVH 358
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
730-945 |
1.43e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.00 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 730 APVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDViAPV 809
Cdd:PRK07003 397 PAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPA-DSG 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 810 VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDV 889
Cdd:PRK07003 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV 555
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965703 890 -----------AAPVVEVTPPPSAEAPLAEDVAAPVVEVtPPPSVEAPLAEDVAAPVVEVTPPPSAE 945
Cdd:PRK07003 556 lrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAV-QVPTPRARAATGDAPPNGAARAEQAAE 621
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
827-935 |
1.48e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.22 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 827 AAPVVevtPPPSAEPPLaeDVVAPV---IEVTPPPSA-EVPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSA 902
Cdd:PRK11633 40 AIPLV---PKPGDRDEP--DMMPAAtqaLPTQPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPV 112
|
90 100 110
....*....|....*....|....*....|....
gi 1712965703 903 EAPLAEDVAAPVVEVTPPPSVE-APLAEDVAAPV 935
Cdd:PRK11633 113 EKPKPKPKPQQKVEAPPAPKPEpKPVVEEKAAPT 146
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
341-452 |
1.53e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 42.66 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 341 NILMYGPPGTGKTLFAKKLA------------MHSGMDYAIMTGG-DVAPMG---RDG--VTAMhkvfdwantsRRGLLL 402
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAaalsnrpvfyvqLTRDTTEEDLFGRrNIDPGGaswVDGplVRAA----------REGEIA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 403 FVDEADaflrkrsteKISEDLRATLNAFLY-----------RTGEQSNKFMLVLASNQPEQ 452
Cdd:pfam07728 71 VLDEIN---------RANPDVLNSLLSLLDerrlllpdggeLVKAAPDGFRLIATMNPLDR 122
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
785-906 |
1.66e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.48 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 785 VEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVT---PPPSAEPPLAEDVVAP---VIEVTPPP 858
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAaapPAPVAAPAAAAPAAAPaaaPAAVALAP 449
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1712965703 859 SAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 906
Cdd:PRK14951 450 APPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
807-925 |
2.31e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 807 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 886
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965703 887 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA 925
Cdd:PRK07764 471 AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-214 |
2.43e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDlARMQEQSTQLEHQSKIKEY-EAAVEQLKGDQIRIQGEER--RKTLNEETKQHQARAQY 126
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAE-EQLVQANGELEKASREETFaRTALKNARLDLRRLFDEKQseKDKKNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 127 Q-DKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-------------KATIEHEmELRHKNELLRIEAESKAR-- 190
Cdd:pfam12128 683 RlNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQvvegaldaqlallKAAIAAR-RSGAKAELKALETWYKRDla 761
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965703 191 ---------ARVERENADIIR--EQIRLKAAEHRQ 214
Cdd:pfam12128 762 slgvdpdviAKLKREIRTLERkiERIAVRRQEVLR 796
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
837-923 |
2.54e-04 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 41.60 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 837 PSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 916
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965703 917 VTPPPSV 923
Cdd:pfam12526 99 PPLPPPR 105
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
336-411 |
3.15e-04 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 44.31 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 336 NGLYRNILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE-- 406
Cdd:PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFealsAVT----------SGVKDLREVIEEARQRRsagRRTILFIDEih 102
|
90
....*....|.
gi 1712965703 407 ------ADAFL 411
Cdd:PRK13342 103 rfnkaqQDALL 113
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
807-994 |
3.22e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 44.69 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 807 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS---AEPPLAEdvvaPVIEVTPPPSAEVPlaEDVAAPVVEVTPPPSAEA 883
Cdd:PRK10263 314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPvasVDVPPAQ----PTVAWQPVPGPQTG--EPVIAPAPEGYPQQSQYA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 884 PLAEDVAAPVVEVTPP-----------PSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVE---VTPPPSAEVKCT 949
Cdd:PRK10263 388 QPAVQYNEPLQQPVQPqqpyyapaaeqPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQqstFAPQSTYQTEQT 467
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1712965703 950 LSDGLDSDNTVKAEPASETEHLAQPAASAEteakmkkEDKTVSPP 994
Cdd:PRK10263 468 YQQPAAQEPLYQQPQPVEQQPVVEPEPVVE-------ETKPARPP 505
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
107-214 |
3.67e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 41.95 E-value: 3.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 107 EERRKTLNEETKQHQARAQYQDKLARQRYEDQLRQ---QQILNEENLRKQEESVQKQEAMRKATIE---HEMELRHKNEL 180
Cdd:pfam05672 17 AEKRRQAREQREREEQERLEKEEEERLRKEELRRRaeeERARREEEARRLEEERRREEEERQRKAEeeaEEREQREQEEQ 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965703 181 LRIEA---ESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam05672 97 ERLQKqkeEAEAKAREEAERQRQEREKIMQQEEQERL 133
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-214 |
3.93e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKS-RHAKEALD-----LARMQEQSTQLEHQSKIKEYEAA-----VEQLKG--DQIRIQGEERRKTLNE 115
Cdd:TIGR02168 290 LYALANEISRLEQQkQILRERLAnlerqLEELEAQLEELESKLDELAEELAeleekLEELKEelESLEAELEELEAELEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 116 -ETKQHQARAQYQDklARQRYeDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVE 194
Cdd:TIGR02168 370 lESRLEELEEQLET--LRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180
....*....|....*....|
gi 1712965703 195 RENADIIREQIRLKAAEHRQ 214
Cdd:TIGR02168 447 EELEELQEELERLEEALEEL 466
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
342-457 |
4.99e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 41.73 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTA-MHKVFDWANTSRRGLLLFvDEADAFLRKRST---- 416
Cdd:cd19527 29 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEAnVREVFQKARDAKPCVIFF-DELDSLAPSRGNsgds 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1712965703 417 ----EKISEDLRATLNAfLYRTGEQsnkFMLVLASNQPEQFDWAI 457
Cdd:cd19527 108 ggvmDRVVSQLLAELDG-MSSSGQD---VFVIGATNRPDLLDPAL 148
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-200 |
5.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 40 KWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARM--QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEET 117
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 118 KQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
...
gi 1712965703 198 ADI 200
Cdd:COG1196 774 REI 776
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
340-457 |
5.27e-04 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 42.09 E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLA-MHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGL-------LLFVDEADA 409
Cdd:cd19504 36 KGILLYGPPGTGKTLMARQIGkMLNAREPKIVNGPEILNkyVG-ESEANIRKLFADAEEEQRRLgansglhIIIFDEIDA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 410 FLRKRSTEKISEDLRATL-NAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19504 115 ICKQRGSMAGSTGVHDTVvNQLLSKIDgvEQLNNILVIGMTNRKDLIDEAL 165
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
56-194 |
5.86e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 56 AKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEaaVEQLKGDQIRIQgEERRKTLNEETKQHQaRAQYQDKLARQRY 135
Cdd:pfam17380 445 AREMERVR--LEEQERQQQVERLRQQEEERKRKKLE--LEKEKRDRKRAE-EQRRKILEKELEERK-QAMIEEERKRKLL 518
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965703 136 EDQL--RQQQILNEENLRKQEESVQK----------QEAMRKATIEHEM--ELRHKNELLRIEAES-KARARVE 194
Cdd:pfam17380 519 EKEMeeRQKAIYEEERRREAEEERRKqqemeerrriQEQMRKATEERSRleAMEREREMMRQIVESeKARAEYE 592
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
340-475 |
6.16e-04 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 43.61 E-value: 6.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDG---VTAMHKVFDWANTSrrglLLFVDEADAFLRKR- 414
Cdd:PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSElIQKYLGDGpklVRELFRVAEENAPS----IVFIDEIDAIGTKRy 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 415 -STEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDER 475
Cdd:PTZ00361 294 dATSGGEKEIQRTMLELLNQLDgfDSRGDVKVIMATNRIESLDPALirPGRIDRKIEF--PNPDEK 357
|
|
| PKK |
pfam12474 |
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ... |
69-218 |
6.36e-04 |
|
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.
Pssm-ID: 463600 [Multi-domain] Cd Length: 139 Bit Score: 41.01 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 69 LDLARMQ-EQSTQLEHQSKIKEYEAAVEQLkgdqiriqgEERRKTLNEETKQHQArAQYQDKLARQRYEDQLRQQQILne 147
Cdd:pfam12474 1 HQLQKEQqKDRFEQERQQLKKRYEKELEQL---------ERQQKQQIEKLEQRQT-QELRRLPKRIRAEQKKRLKMFR-- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 148 ENLrKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLkAAEHRQTVLE 218
Cdd:pfam12474 69 ESL-KQEKKELKQEVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQL-QNEKRKELAE 137
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
784-895 |
6.61e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.64 E-value: 6.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 784 VVE--VAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaePPLAEDVVAPVIEVTPPPSAE 861
Cdd:PRK14950 355 VIEalLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP---PVPPRPVAPPVPHTPESAPKL 431
|
90 100 110
....*....|....*....|....*....|....
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 895
Cdd:PRK14950 432 TRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
620-1000 |
7.21e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 43.56 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 620 AEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQ---------DVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEE 690
Cdd:PRK14949 372 AEISLPEGQTPSALAAAVQAPHANEPQFVNAApaekktaltEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 691 AVAAAPLVQDVI-------------------TPVVEVTPPPSEEavaAAAAPLVQDVIAPVVEVTPppseeavaaaaaPL 751
Cdd:PRK14949 452 LLAALNAEQAVIlsqaqsqgfeasssldadnSAVPEQIDSTAEQ---SVVNPSVTDTQVDDTSASN------------NS 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 752 VQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAppPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVV 831
Cdd:PRK14949 517 AADNTVDDNYSAEDTLESNGLDEGDYAQDSAPLDAYQ--DDYVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLS 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 832 EVTPPPSAEPPLAED-----VVA-------------PVIEVTPPPSAEV-PLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 892
Cdd:PRK14949 595 PISAVTTAAASLADDdildaVLAardsllsdldalsPKEGDGKKSSADRkPKTPPSRAPPASLSKPASSPDASQTSASFD 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 893 VVEVTPPPS----AEAPLAEDVA-APVVEVTP---PPSVEAPlaEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVkaEP 964
Cdd:PRK14949 675 LDPDFELAThqsvPEAALASGSApAPPPVPDPydrPPWEEAP--EVASANDGPNNAAEGNLSESVEDASNSELQAV--EQ 750
|
410 420 430
....*....|....*....|....*....|....*..
gi 1712965703 965 ASETEHLAQPAASAET-EAKMKKEDKTVSPPKDGTPV 1000
Cdd:PRK14949 751 QATHQPQVQAEAQSPAsTTALTQTSSEVQDTELNLVL 787
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
56-194 |
7.31e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.26 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 56 AKDLDKSRHAKEALDLARMQEQstQLEHQSKIKEYEAavEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRY 135
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQK--QAAEQERLKQLEK--ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 136 EDQLRQ-----QQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVE 194
Cdd:PRK09510 150 EAEAKRaaaaaKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAkKKAEAEAKKKAAAE 214
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
807-912 |
8.08e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.44 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 807 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 886
Cdd:PRK07764 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
|
90 100
....*....|....*....|....*.
gi 1712965703 887 EDVAAPVVEVTPPPSAEAPLAEDVAA 912
Cdd:PRK07764 485 PAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
44-210 |
8.25e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 44 FDPTGLERAAQAAKDLDKSRHAKEALdlarMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG2268 186 LDALGRRKIAEIIRDARIAEAEAERE----TEIAIAQANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETAR 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 124 AQyQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRK-ATIEHEMELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:COG2268 262 AE-AEAAYEIAEANAEREVQRQLEIAEREREIELQEKEAEREeAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEA 340
|
....*...
gi 1712965703 203 EQIRLKAA 210
Cdd:COG2268 341 EGKRALAE 348
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-214 |
8.48e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 71 LARMQEQSTQ----LEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRyeDQLRQQQiln 146
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL--EELRLEL--- 276
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 147 eENLRKQEESVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:COG1196 277 -EELELELEEAQAEEYELLAELA-RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
840-953 |
8.99e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 43.26 E-value: 8.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 840 EPPLAEDVVAPVIEVTP-PPSAEVPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVT 918
Cdd:PRK14950 352 ELAVIEALLVPVPAPQPaKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTP 425
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965703 919 PPPSVEAPLAEDV-AAPVVEVTPPPSAEVKCTLSDG 953
Cdd:PRK14950 426 ESAPKLTRAAIPVdEKPKYTPPAPPKEEEKALIADG 461
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
637-944 |
9.10e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.30 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 637 AMPPPSVEAAAPQAQDVATPIAEVTPPPSVEvepplvPDVIAPIVEVTPPPSEEAVAAAPlvqdvITPVVEVTPPPSEEA 716
Cdd:PRK07003 370 GGVPARVAGAVPAPGARAAAAVGASAVPAVT------AVTGAAGAALAPKAAAAAAATRA-----EAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 717 VAAaaaPLVQDVIAPVVEVTPPPSEEAVAAAAAplvQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAV 796
Cdd:PRK07003 439 GDD---AADGDAPVPAKANARASADSRCDERDA---QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 797 AAAPVAEDVIAPVVEVTPPPSAEAPLAEDV------AAPVVEV------------------TPPPSAEPPLAEDVVAPVI 852
Cdd:PRK07003 513 PAAASREDAPAAAAPPAPEARPPTPAAAAPaaraggAAAALDVlrnagmrvssdrgaraaaAAKPAAAPAAAPKPAAPRV 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 853 EV-TPPPSAEVPLAEDvaapvvevTPPPSAEAPLAEDV-AAPVVEVTPPPSAEAPL--------AEDVAAPVVEVTPPPS 922
Cdd:PRK07003 593 AVqVPTPRARAATGDA--------PPNGAARAEQAAESrGAPPPWEDIPPDDYVPLsadegfggPDDGFVPVFDSGPDDV 664
|
330 340
....*....|....*....|..
gi 1712965703 923 VEAPLAEDVAAPVVEVTPPPSA 944
Cdd:PRK07003 665 RVAPKPADAPAPPVDTRPLPPA 686
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-215 |
1.20e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 75 QEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNE-ETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLR 151
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEElEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965703 152 KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESK-----ARARVERENADIIREQIRLKAAEHRQT 215
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeleAQIEQLKEELKALREALDELRAELTLL 815
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
733-887 |
1.24e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.55 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 733 VEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEV 812
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965703 813 TPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAA--PVVEVTPPPSAEAPLAE 887
Cdd:PRK07994 442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKAlkKALEHEKTPELAAKLAA 518
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
50-210 |
1.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQI-RIQGEERRKTLNEETKQhQARAQYQD 128
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERE-RRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 129 KLA---------RQRYEDQLRQ-QQILneENLRKQEESVQKQEAMRKATIEhemelRHKNELLRIEAEskaRARVERENA 198
Cdd:COG4913 367 LLAalglplpasAEEFAALRAEaAALL--EALEEELEALEEALAEAEAALR-----DLRRELRELEAE---IASLERRKS 436
|
170
....*....|..
gi 1712965703 199 DIIREQIRLKAA 210
Cdd:COG4913 437 NIPARLLALRDA 448
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
68-213 |
1.27e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 42.33 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 68 ALDLARMQEQSTQLEHQskikeYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRYE-----DQL 139
Cdd:pfam15558 11 ALMLARHKEEQRMRELQ-----QQAALaweELRRRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREerrraDRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 140 RQQQILNE----------ENLRK----------------QEESVQKQEAMRKATIEHEMELRHKNELL----RIEAESKA 189
Cdd:pfam15558 86 EKQVIEKEsrwreqaedqENQRQeklerarqeaeqrkqcQEQRLKEKEEELQALREQNSLQLQERLEEachkRQLKEREE 165
|
170 180
....*....|....*....|....*
gi 1712965703 190 RARVEREN-ADIIREQIRLKAAEHR 213
Cdd:pfam15558 166 QKKVQENNlSELLNHQARKVLVDCQ 190
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
566-714 |
1.27e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.72 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 566 LHAEEEAQAKTLTPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEA 645
Cdd:PRK10811 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITES 934
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965703 646 AAPQAQDVA---TPIAEVTPPPSVEVEPPLVPDVIA--PIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSE 714
Cdd:PRK10811 935 DVAVAQEVAehaEPVVEPQDETADIEEAAETAEVVVaePEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
819-887 |
1.28e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.68 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965703 819 EAPLAEDVAAPVVEVTPPPSAEPplAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAE 887
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
787-984 |
1.35e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.60 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 787 VAPPPSEEAVAAAPVAEDVIAPVVEVTPP-PSAEAPLAEdVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLA 865
Cdd:pfam05109 488 VTPSPSPRDNGTESKAPDMTSPTSAVTTPtPNATSPTPA-VTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPT 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 866 EDVAAPVVEVTPPPSAeaplaedvaapvvEVTPPPSAEAPlaedvaaPVVEVTPPP-SVEAPLAEDVAAPVVEVTPPPSA 944
Cdd:pfam05109 567 PNATIPTLGKTSPTSA-------------VTTPTPNATSP-------TVGETSPQAnTTNHTLGGTSSTPVVTSPPKNAT 626
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1712965703 945 EVKCTLSDGLDSDNT--VKAEPASETEHLAqPAASAETEAKM 984
Cdd:pfam05109 627 SAVTTGQHNITSSSTssMSLRPSSISETLS-PSTSDNSTSHM 667
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
869-988 |
1.63e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.16 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 869 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVKc 948
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAK- 439
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965703 949 tLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 988
Cdd:PRK07994 440 -KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
107-313 |
1.70e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 42.42 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 107 EERRKTLNEETKQHQARAQY-----QDKLARQRYEDQLRQQQILNEENLRKQEesVQKQEAMRKATIEHEMELRHKNELL 181
Cdd:PTZ00266 407 DDRKYPQDGATHCHAVNGHYggrvdKDHAERARIEKENAHRKALEMKILEKKR--IERLEREERERLERERMERIERERL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 182 ---RIEAESKARARVERENADIIR-------EQIRLKAAEHRQTVLESIK---TAGAVFGEGfrafvsdwdkvtATVAGL 248
Cdd:PTZ00266 485 ereRLERERLERDRLERDRLDRLErervdrlERDRLEKARRNSYFLKGMEnglSAGGGPGDG------------PGVGAG 552
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 249 TLLAVGVYSARNATGV-AGRYIEARLGKPSLVRETSRFTVGEAIKHPVKtvKRLKSKPQDALEGVV 313
Cdd:PTZ00266 553 VGAGVGTSDGRNHSGVrSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVH--DSMRSGVHDSLRGGV 616
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
848-995 |
1.78e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.16 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 848 VAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPL 927
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 928 AEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPK 995
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK 508
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
79-177 |
1.86e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 41.50 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 79 TQLEHQSKIKEYEAAVEQLKGDQIRIQgeerRKTLNEETKQHQARAQYQDKlarqRYEDQLRQ--------QQILNEENL 150
Cdd:pfam02841 193 LQTDQALTAKEKAIEAERAKAEAAEAE----QELLREKQKEEEQMMEAQER----SYQEHVKQliekmeaeREQLLAEQE 264
|
90 100
....*....|....*....|....*..
gi 1712965703 151 RKQEESVQKQEAMRKATIEHEMELRHK 177
Cdd:pfam02841 265 RMLEHKLQEQEELLKEGFKTEAESLQK 291
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
864-929 |
1.94e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.29 E-value: 1.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 864 LAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 929
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
342-360 |
1.99e-03 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440233 [Multi-domain] Cd Length: 583 Bit Score: 41.95 E-value: 1.99e-03
|
| FliJ |
COG2882 |
Flagellar biosynthesis chaperone FliJ [Cell motility]; |
69-185 |
2.44e-03 |
|
Flagellar biosynthesis chaperone FliJ [Cell motility];
Pssm-ID: 442129 [Multi-domain] Cd Length: 142 Bit Score: 39.50 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETKQHQARAQYQDklaRQRYEDQLRQ---QQIL 145
Cdd:COG2882 11 LDLAEKEEDEAARELGQAQQALEQAEEQL--EQLEQYREEYEQRLQQKLQQGLSAAQLRN---YQQFIARLDEaieQQQQ 85
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965703 146 NEENLRKQEESVQK--QEAMRK-ATIEHEMElRHKNELLRIEA 185
Cdd:COG2882 86 QVAQAEQQVEQARQawLEARQErKALEKLKE-RRREEERQEEN 127
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
858-944 |
2.57e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.52 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 858 PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlaedvAAPVVE 937
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965703 938 VTPPPSA 944
Cdd:pfam12526 99 PPLPPPR 105
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
791-1000 |
2.59e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 41.45 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 791 PSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAA 870
Cdd:PLN03209 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDA 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 871 PVVEVTPPPSAEAPLAEDVaaPVVEVTPPPSAEA-PLAEDVAAPVVEvtpPPSVEAPLAEDVAAPVVEVTPPPSAevkct 949
Cdd:PLN03209 404 VAKPAEPDVVPSPGSASNV--PEVEPAQVEAKKTrPLSPYARYEDLK---PPTSPSPTAPTGVSPSVSSTSSVPA----- 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 950 lsdgldSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTPV 1000
Cdd:PLN03209 474 ------VPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPV 518
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
782-988 |
2.72e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 782 APVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAeAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE 861
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPA-APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 862 VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE-VTPPPSVEAPLAEDVAAPVVEVTP 940
Cdd:PRK07764 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDpAAQPPQAAQGASAPSPAADDPVPL 741
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1712965703 941 PPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 988
Cdd:PRK07764 742 PPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
75-221 |
2.83e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 75 QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyqdklARQRYEDQLRQQQI---------- 144
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIameisrmrel 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 145 --LNEENLRKQEESVQKQEAMRKATIEHE------MELRHKNELLRIEAESKARARVERENADIIREQIRLKAAE-HRQT 215
Cdd:pfam17380 381 erLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQ 460
|
....*.
gi 1712965703 216 VLESIK 221
Cdd:pfam17380 461 QVERLR 466
|
|
| CCDC66 |
pfam15236 |
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil ... |
73-188 |
2.91e-03 |
|
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Pssm-ID: 434558 [Multi-domain] Cd Length: 154 Bit Score: 39.39 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 73 RMQEQSTQLEHQSKIKEyeaaveqlkgdqiriQGEERRKTLNEETKQHQARAQYQD-KLARQ------RYEDQLRQQQIL 145
Cdd:pfam15236 47 RERKRQKALEHQNAIKK---------------QLEEKERQKKLEEERRRQEEQEEEeRLRREreeeqkQFEEERRKQKEK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965703 146 NEENLRKQEESVQkqeAMRKAtieHEMELRHKNELLRIEAESK 188
Cdd:pfam15236 112 EEAMTRKTQALLQ---AMQKA---QELAQRLKQEQRIRELAEK 148
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
682-886 |
2.91e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 682 EVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVE 761
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 762 VTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAP---VVEVTPPPS 838
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPagwVAESIPDPA 530
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1712965703 839 AEPPLAEDVVAPVievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 886
Cdd:PRK12323 531 TADPDDAFETLAP----APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-222 |
2.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG------DQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriraleQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 124 AQYQDKLARQRYEDQLRQQQ-----ILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLR--IEAESKARARVERE 196
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*..
gi 1712965703 197 NADIIREQIRLKAAEH-RQTVLESIKT 222
Cdd:COG4942 180 LAELEEERAALEALKAeRQKLLARLEK 206
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
783-917 |
3.07e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 41.47 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 783 PVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievtPPPSAEV 862
Cdd:PRK14954 376 NDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQASA 450
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 863 PLAEDVAAPVVEVTpppSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 917
Cdd:PRK14954 451 PRNVASGKPGVDLG---SWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAEL 502
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
818-934 |
3.10e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.94 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 818 AEAPLAEDVAAPV--VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplAEDVAApvveVTPPPSAEAPLAEDVAAPVVE 895
Cdd:PRK12373 208 ASKALAEDIGDTVkrIDGTEVPLLAPWQGDAAPVPPSEAARPKSAD---AETNAA----LKTPATAPKAAAKNAKAPEAQ 280
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965703 896 VTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 934
Cdd:PRK12373 281 PVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
828-945 |
3.27e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 40.44 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 828 APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 907
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965703 908 EDVAAPVVEVTPP-PSVEAPLAEDVAAPVVEVTPPPSAE 945
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAAS 150
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
785-933 |
3.64e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 785 VEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPvVEVTPPPSAEPPLAEDvvapvieVTPPPSAEVPL 864
Cdd:PRK07994 388 TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRA-QGATKAKKSEPAAASR-------ARPVNSALERL 459
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965703 865 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPPSVEAPLAEDVAA 933
Cdd:PRK07994 460 ASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKLAAEAIERDPWAA 528
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
341-359 |
3.66e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 39.83 E-value: 3.66e-03
|
| ZipA |
COG3115 |
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
823-938 |
3.69e-03 |
|
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 40.45 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 823 AEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEvtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 902
Cdd:COG3115 48 DGIGEVRVVAAEAPERVEPEASFDAEDEVRE--PDQEEVDPLLDDEADIEAAPAEPVRWAGTAAAVEPAPEQEAYEEAGP 125
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965703 903 EAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEV 938
Cdd:COG3115 126 AGESAEQEDAPAEEPEAEAPAEEALAAELCAEPEEV 161
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
121-360 |
3.89e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.91 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 121 QARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERE---- 196
Cdd:COG1401 2 LRPVLEFKFLIVGLRLKPLESEDAVRELGIRADDLRGAAELATRLAERLSEELLRADRAARATELVEELSAALEVVvlll 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 197 -----NADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1401 82 dlekvELNEKLALSEAAVAIEELYELEADSEIEAVGLLLELAERSDALEALERARLLLELADLEERAALETEVLEALEAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 272 RLG----KPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEGVVlsptlEERVRDVAIATRNTRqnnglyrNILMYGP 347
Cdd:COG1401 162 LEEllaaPEDLSADALAAELSAAEELYSEDLESEDDYLKDLLREKF-----EETLEAFLAALKTKK-------NVILAGP 229
|
250
....*....|...
gi 1712965703 348 PGTGKTLFAKKLA 360
Cdd:COG1401 230 PGTGKTYLARRLA 242
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
811-996 |
3.93e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 811 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAP-----VIEVTPPPSAEVPLAED------VAAPVVEVTPPP 879
Cdd:PHA03307 49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPtwslsTLAPASPAREGSPTPPGpsspdpPPPTPPPASPPP 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 880 SAEAPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP---SVEAPLAEDVAAPVveVTPPPSAEVKCTLSDGLDS 956
Cdd:PHA03307 129 SPAPDLSEM-LRPVGSPGPPPAASPPAAGASPAAVASDAASSrqaALPLSSPEETARAP--SSPPAEPPPSTPPAAASPR 205
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1712965703 957 DNTVKAEPASETEHLA-QPAASAETEAKMKKEDKTVSPPKD 996
Cdd:PHA03307 206 PPRRSSPISASASSPApAPGRSAADDAGASSSDSSSSESSG 246
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
757-912 |
3.97e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 757 APVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPP---PSAEAPLAEDVAAPVVEV 833
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqrAQGATKAKKSEPAAASRA 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 834 TPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPPSAEAPLAEDVA 911
Cdd:PRK07994 450 RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKLAAEAIERDPWA 527
|
.
gi 1712965703 912 A 912
Cdd:PRK07994 528 A 528
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
338-414 |
3.98e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 38.95 E-value: 3.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965703 338 LYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGRDGvTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19526 26 LRSGILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNkyIGASE-QNVRDLFSRAQ-SAKPCILFFDEFDSIAPKR 102
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
84-221 |
4.03e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 84 QSKIKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQ--HQARAQYQDKLARQRYEDQLRQQQILN-EENLRKQEESVQKQ 160
Cdd:PRK12704 30 EAKIKEAEEEAKRIL-EEAKKEAEAIKKEALLEAKEeiHKLRNEFEKELRERRNELQKLEKRLLQkEENLDRKLELLEKR 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965703 161 eamrkatiEHEMELRHKNELLRIEAESKARARVERenadIIREQIR-------LKAAEHRQTVLESIK 221
Cdd:PRK12704 109 --------EEELEKKEKELEQKQQELEKKEEELEE----LIEEQLQelerisgLTAEEAKEILLEKVE 164
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
69-220 |
4.04e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 69 LDLARMQEQSTQLEHQ-----SKIKEYEAAVEQLKGDQIRIQGE-----ERRKTLNEETKQHQAR-AQYQDKLARQRYED 137
Cdd:COG1579 10 LDLQELDSELDRLEHRlkelpAELAELEDELAALEARLEAAKTEledleKEIKRLELEIEEVEARiKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 138 QL-----------RQQQILNEENLRKQEESVQKQEAMRKAtiehemelrhKNELLRIEAESKA-RARVERENADIIREQI 205
Cdd:COG1579 90 EYealqkeieslkRRISDLEDEILELMERIEELEEELAEL----------EAELAELEAELEEkKAELDEELAELEAELE 159
|
170
....*....|....*
gi 1712965703 206 RLKAAehRQTVLESI 220
Cdd:COG1579 160 ELEAE--REELAAKI 172
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
342-362 |
5.26e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.58 E-value: 5.26e-03
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
882-945 |
6.10e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 40.37 E-value: 6.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965703 882 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAE 945
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEA 95
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
843-908 |
6.42e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 40.37 E-value: 6.42e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965703 843 LAEDVVAPVIEVTPPPSAEVplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 908
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
731-929 |
6.56e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.36 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 731 PVVEVTPPPSEEAVAAAAAPlvqdVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPppseeavAAAPVAEDVIAPVV 810
Cdd:PRK12727 63 PATAAAPAPAPQAPTKPAAP----VHAPLKLSANANMSQRQRVASAAEDMIAAMALRQP-------VSVPRQAPAAAPVR 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 811 EVTPPPSAEAPLAedVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEA------- 883
Cdd:PRK12727 132 AASIPSPAAQALA--HAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHaayaqdd 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965703 884 ------PLAEDVAAPVVEVTP---PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 929
Cdd:PRK12727 210 deqlddDGFDLDDALPQILPPaalPPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
878-999 |
6.99e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.08 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 878 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVeaplaedvAAPVVEVTPPPSAEVKCTLSDGLDSd 957
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAA--------SAPAAPPAAAPPAPVAAPAAAAPAA- 436
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965703 958 ntvkAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 999
Cdd:PRK14951 437 ----APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS 474
|
|
| ClpX |
COG1219 |
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein ... |
341-360 |
7.39e-03 |
|
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440832 [Multi-domain] Cd Length: 409 Bit Score: 40.03 E-value: 7.39e-03
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-213 |
7.42e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSK-IKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLE-ERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 128 DKLARQryedqlrqqqilnEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAeSKARARVERENADIIREQIRL 207
Cdd:TIGR02168 775 EELAEA-------------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRL 840
|
....*.
gi 1712965703 208 KAAEHR 213
Cdd:TIGR02168 841 EDLEEQ 846
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
675-944 |
8.08e-03 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 40.00 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 675 DVIAPIVEVTPPPSEEAVAAAPL-VQDVITPVVEVTP---PPSEEAvaaaaaplVQDVIAPVVEVTPPPSEEAVAAAAAP 750
Cdd:COG0515 215 ELLRAHLREPPPPPSELRPDLPPaLDAIVLRALAKDPeerYQSAAE--------LAAALRAVLRSLAAAAAAAAAAAAAA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 751 LVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVAPPPSEEAVAAAPVAEDVIAPVVEVTPPPSAEAPLAEDVAAPV 830
Cdd:COG0515 287 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 831 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 910
Cdd:COG0515 367 AAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLA 446
|
250 260 270
....*....|....*....|....*....|....
gi 1712965703 911 AAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 944
Cdd:COG0515 447 AAAAAAAAAAAAPLLAALLAAAALAAAAAAAALA 480
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
341-359 |
8.29e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 40.02 E-value: 8.29e-03
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
816-961 |
8.39e-03 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 39.46 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 816 PSAEAPLAEDVAAPVvevtpPPSAEPPLAEDVVAPVIeVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlaedVAAPVVE 895
Cdd:PHA02682 76 PSGQSPLAPSPACAA-----PAPACPACAPAAPAPAV-TCPAPAPACPPATAPTCPPPAVCPAPARPAP----ACPPSTR 145
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965703 896 VTPP-PSAEAPLAEDVAAPVV--EVTPPPSVEAplaedVAAPVVEVTPPPSAEVKCTLSDG-LDSDNTVK 961
Cdd:PHA02682 146 QCPPaPPLPTPKPAPAAKPIFlhNQLPPPDYPA-----ASCPTIETAPAASPVLEPRIPDKiIDADNDDK 210
|
|
| clpX |
PRK05342 |
ATP-dependent Clp protease ATP-binding subunit ClpX; |
341-360 |
8.53e-03 |
|
ATP-dependent Clp protease ATP-binding subunit ClpX;
Pssm-ID: 235422 [Multi-domain] Cd Length: 412 Bit Score: 39.76 E-value: 8.53e-03
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
335-359 |
9.15e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.45 E-value: 9.15e-03
10 20
....*....|....*....|....*
gi 1712965703 335 NNGLYRNILMYGPPGTGKTLFAKKL 359
Cdd:COG1474 47 RGERPSNVLIYGPTGTGKTAVAKYV 71
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
335-369 |
9.30e-03 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 40.09 E-value: 9.30e-03
10 20 30
....*....|....*....|....*....|....*
gi 1712965703 335 NNGLyrNILMYGPPGTGKTLFAKklAMHSgmdYAI 369
Cdd:COG1221 128 PKGL--HTLILGPTGVGKSFFAE--LMYE---YAI 155
|
|
| |
