|
Name |
Accession |
Description |
Interval |
E-value |
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
754-865 |
1.05e-29 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 113.79 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 754 AVRMGAGSSIIENLQSQLKLREGEISHLQLEISNLEKTRSIMSEELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYNTI 833
Cdd:pfam12325 4 TSGAGPSVQLVERLSSTIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELKELKKELEELEKELKELEQRYETT 83
|
90 100 110
....*....|....*....|....*....|..
gi 1720417759 834 LQMYGEKAEEAEELRLDLEDVKNMYKTQIDEL 865
Cdd:pfam12325 84 LELLGEKSEEVEELKADVEDLKEMYREQVQQL 115
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
230-865 |
3.12e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 3.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 230 EFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTI 309
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 310 KEELATRLNSSQ-TADLLKEKDEQIQGLMEEgeklskqqlhnsniIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQV 388
Cdd:TIGR02168 322 EAQLEELESKLDeLAEELAELEEKLEELKEE--------------LESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 389 LDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREM 468
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 469 KAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDylRHEISELQQRLQEAENRNQELSQSVS----- 543
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN--QSGLSGILGVLSELISVDEGYEAAIEaalgg 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 544 ------------------------------------------STARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGES 581
Cdd:TIGR02168 546 rlqavvvenlnaakkaiaflkqnelgrvtflpldsikgteiqGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 582 ---QTLLAAAVERERAATEELLANK----------IQMSSVESQNTLL--RQENSRLQAQLESEKNKLRKLEDENSRYQV 646
Cdd:TIGR02168 626 lvvDDLDNALELAKKLRPGYRIVTLdgdlvrpggvITGGSAKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRK 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 647 ELENLKDEYV---RTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKEKDHKLFSVCSTPTMSRSSSISGVD--- 720
Cdd:TIGR02168 706 ELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAeie 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 721 -----AAGLQASFLSQDESHDHSFGPMS-TSASGSNLYEAV-----RMGAGSSIIENLQSQLKLREGEISHLQLEISNLE 789
Cdd:TIGR02168 786 eleaqIEQLKEELKALREALDELRAELTlLNEEAANLRERLeslerRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 790 KTRSIMSEELVKLTNQNDELEEKVKEI----PKLRVQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDEL 865
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLrselEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
232-698 |
1.59e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 1.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE 311
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ELATRLN---------SSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKA------K 376
Cdd:COG1196 324 ELAELEEeleeleeelEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAelaaqlE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 377 ELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKD 456
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 457 SEVQEAALRREMK--AKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAA-------------RKEDYLRHEI 521
Cdd:COG1196 484 EELAEAAARLLLLleAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALeaalaaalqnivvEDDEVAAAAI 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 522 SELQQRLQEAENRNQELSQSVSSTARPLLRQIENLQATLGSQTSS------WETLEKSLSDRLGESQTLLAAAVERERAA 595
Cdd:COG1196 564 EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLreadarYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 596 TEELLANKIQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLEM 675
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
490 500
....*....|....*....|...
gi 1720417759 676 ERMKVEQERKKTIFTQEALKEKD 698
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEE 746
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-869 |
1.29e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 240 ETQLLSLSKEKALLEEaYDNLKDEMFRVKEESSSISslKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELAtrlns 319
Cdd:COG1196 199 ERQLEPLERQAEKAER-YRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELE----- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 320 sqtadllkEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQH 399
Cdd:COG1196 271 --------ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 400 RENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELtdLHKANAAKDSEVQEAALRREMKAKEELSGALE 479
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL--LEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 480 KAQEEARQQQEALVLQVGDLRLALQRAEQAAAR---KEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPLLRQIENL 556
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAEleeEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 557 QATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLAnkiqmssVESQNTLLRQENSRLQAQLESEKNKLRK 636
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALA-------AALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 637 LEdensryqvELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKEkdhklfsvcstptmsrsssi 716
Cdd:COG1196 574 AT--------FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR-------------------- 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 717 sgVDAAGLQASFLSQDESHDHSFGPMSTSASGSNLYEAVRMGAGSSIIENLQSQLKLREGEISHLQLEISNLEKTRSIMS 796
Cdd:COG1196 626 --TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720417759 797 EELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLRQR 869
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
299-630 |
1.90e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 299 RDAAKKEMKTIKEELaTRLNssqtaDLLKEKDEQI-------------QGLMEEGEKLSKQQLHNSniIKKLRAKDKDNE 365
Cdd:COG1196 174 KEEAERKLEATEENL-ERLE-----DILGELERQLeplerqaekaeryRELKEELKELEAELLLLK--LRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 366 NVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYREL 445
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 446 TDLHKANAAKDSEVQEAALRREMKAKE-ELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISEL 524
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 525 QQRLQEAENRNQELSQSVSSTARPLLRQIENLQATLgsqtsswETLEKSLSDRLGESQTLLAAAVERERAATEELLANKI 604
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEE-------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330 340
....*....|....*....|....*.
gi 1720417759 605 QMSSVESQNTLLRQENSRLQAQLESE 630
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYE 504
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
320-393 |
1.94e-13 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 66.18 E-value: 1.94e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720417759 320 SQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKE 393
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
227-665 |
8.96e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 8.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 227 KTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEM 306
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 307 KTIKEELATRLNS-SQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHL 385
Cdd:COG1196 382 EELAEELLEALRAaAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 386 RQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSA-----YRELTDLHKANAAKDSEVQ 460
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglAGAVAVLIGVEAAYEAALE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 461 EAALRREMKAKEELSGALEKAQEEARQQQEALV--LQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQEL 538
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 539 SQSVSSTARPLL---RQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTL 615
Cdd:COG1196 622 LLGRTLVAARLEaalRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1720417759 616 LRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKE 665
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
232-530 |
2.41e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE 311
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ELATRLNS-SQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLD 390
Cdd:TIGR02168 762 EIEELEERlEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 391 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEA--ALRREM 468
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELrrELEELR 921
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720417759 469 KAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQE 530
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
400-701 |
1.10e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 400 RENIKKLNSVVERQEKDLGRLQVDMD------ELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEE 473
Cdd:COG1196 185 EENLERLEDILGELERQLEPLERQAEkaeryrELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 474 LsgalEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARkedyLRHEISELQQRLQEAENRNQELSQSVSStarpLLRQI 553
Cdd:COG1196 265 L----EAELEELRLELEELELELEEAQAEEYELLAELAR----LEQDIARLEERRRELEERLEELEEELAE----LEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 554 ENLQATLGSQTSSWETLEKSLSD---RLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQENSRLQAQLESE 630
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEaeaELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720417759 631 KNKLRKLEDENSRYQ---VELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKEKDHKL 701
Cdd:COG1196 413 LERLERLEEELEELEealAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
368-664 |
2.87e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 368 IAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTD 447
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 448 LHKANAAKDSEVQEAalRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARkedyLRHEISELQQR 527
Cdd:TIGR02168 759 LEAEIEELEERLEEA--EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN----LRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 528 LQEAENRNQELSQsvssTARPLLRQIENLQATLGSQTSSWETLE---KSLSDRLGESQTLLAAAVERERAATEELLANKI 604
Cdd:TIGR02168 833 IAATERRLEDLEE----QIEELSEDIESLAAEIEELEELIEELEselEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720417759 605 QMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDE-NSRYQVELENLKDEYVRTLEESRK 664
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
233-683 |
7.75e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 7.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 233 NEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEE 312
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNK 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 313 LAT---------------RLNSSQTADL----------LKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENV 367
Cdd:TIGR04523 196 LLKlelllsnlkkkiqknKSLESQISELkkqnnqlkdnIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 368 IAKLNRKAKELEEELQHLRQVLdgkEEVEKQHRENI-KKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELT 446
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEI---SDLNNQKEQDWnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 447 DLHKANAAKDSEVQEaalrremkaKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDylrhEISELQQ 526
Cdd:TIGR04523 353 NSESENSEKQRELEE---------KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE----QIKKLQQ 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 527 RLQEAENRNQELSQSVS---STARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLlaaaVERERAATEELLANK 603
Cdd:TIGR04523 420 EKELLEKEIERLKETIIknnSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI----KQNLEQKQKELKSKE 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 604 IQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVR---TLEESRKEKTLLSSQLEMERMKV 680
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQ 575
|
...
gi 1720417759 681 EQE 683
Cdd:TIGR04523 576 TQK 578
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
205-700 |
5.05e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 5.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 205 ATEQCEAVENQPKAPPEKEDVCKTVEFLNEKLEKRetqllslsKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQR 284
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA--------KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 285 IAEAEKKVQLACKERDAAKK---EMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKD 361
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKkaeEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 362 KDNENVIAKLNRKAKELEEELQHLRQVLDGK---EEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDEL---EEKSRSTQ 435
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaEEAKKADE 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 436 AALDSAYRELTDLHKANAAKDSEVQEAAlRREMKAKEELSGALEKAqEEARQQQEALVLQVGDLRLALQRAEQAAARKED 515
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELKKAEEKKKA-EEAKKAEEDKNMALRKA-EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 516 YLRHEISELQQRLQEAENRNQELSQSVSSTARP-LLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERA 594
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAeELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 595 ATEEllankiqmssvesqntllRQENSRLQAQLESEKNK---LRKLEDENSRYQVELENLKDEYVRTLEESRKEktllss 671
Cdd:PTZ00121 1697 EAEE------------------AKKAEELKKKEAEEKKKaeeLKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD------ 1752
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1720417759 672 qlEMERMKVEQERK------------KTIFTQEALKEKDHK 700
Cdd:PTZ00121 1753 --EEEKKKIAHLKKeeekkaeeirkeKEAVIEEELDEEDEK 1791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-687 |
3.39e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 451 ANAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDylrhEISELQQRLQE 530
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA----ELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 531 AENRNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEKSLsdrlgesqTLLAAAVERERAATEELLANKIQMSSVE 610
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL--------QYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720417759 611 SQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKT 687
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
304-865 |
6.46e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 6.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 304 KEMKTIKEELATRLNSSQTAD-LLKEKDEQIQGLMEEGEKLSKQqlhnsniIKKLRAKDKDNENVIAKLNRKAKELEEEL 382
Cdd:TIGR04523 40 KKLKTIKNELKNKEKELKNLDkNLNKDEEKINNSNNKIKILEQQ-------IKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 383 QHLRQVLDGKE----EVEKQHREN---IKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANA-A 454
Cdd:TIGR04523 113 KNDKEQKNKLEvelnKLEKQKKENkknIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDkI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 455 KDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENR 534
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 535 NQELSQSVS--STARPLLRQIENLQATLGSQTSswETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQ 612
Cdd:TIGR04523 273 QKELEQNNKkiKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 613 NTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEyVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQE 692
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQ-INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 693 ALKEKDHKlfsvcstptmsrsssisgvdaaglQASFLSQDESHDHSFgpmstsasgSNLYEAVRmgagsSIIENLQSQLK 772
Cdd:TIGR04523 430 RLKETIIK------------------------NNSEIKDLTNQDSVK---------ELIIKNLD-----NTRESLETQLK 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 773 LREGEISHLQLEISNLEKTRSIMSEELVKLTNQNDELEEKVK----EIPKLRVQLRDLDQRYNTILQMYGEKAEEAEELR 848
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKdltkKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
570
....*....|....*..
gi 1720417759 849 LDLEdvKNMYKTQIDEL 865
Cdd:TIGR04523 552 FELK--KENLEKEIDEK 566
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
371-702 |
7.58e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 7.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 371 LNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQvdmdELEEKSRSTQAALDSAYRELTDLhk 450
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE----ELEEDLSSLEQEIENVKSELKEL-- 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 451 anaAKDSEVQEAALRREMKAKEELSGALEKAQ-EEARQQQEALVLQVGDLRLALQRAEQAAAR---KEDYLRHEISELQQ 526
Cdd:TIGR02169 764 ---EARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 527 RLQEAENRNQELSQsvsstarpllrQIENLQATLGSQTSSWETLEKSLSDRLGEsqtlLAAAVERERAATEELLANKIQM 606
Cdd:TIGR02169 841 QRIDLKEQIKSIEK-----------EIENLNGKKEELEEELEELEAALRDLESR----LGDLKKERDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 607 SSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEyvRTLEESRKEKTLLSSQLEMERMKVEQERKK 686
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL--EDVQAELQRVEEEIRALEPVNMLAIQEYEE 983
|
330
....*....|....*.
gi 1720417759 687 TIFTQEALKEKDHKLF 702
Cdd:TIGR02169 984 VLKRLDELKEKRAKLE 999
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
261-700 |
1.48e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 261 KDEMFRVKEESSSISSLKDEfTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEG 340
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAE-EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 341 EKLSKQQlHNSNIIKKLRAKDKDNENVIAKLNRKAKELE--------EELQHLRQVLDGKEEVEKQHRENIKKLNSVVER 412
Cdd:PTZ00121 1335 KKKAEEA-KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKkeeakkkaDAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 413 QEKdlgrlQVDMDELEEKSRSTQAAlDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEELSGA--LEKAQEEARQQQE 490
Cdd:PTZ00121 1414 AAA-----KKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdeAKKKAEEAKKADE 1487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 491 ALVLQVGDLRLA--LQRAEQAAARKEDYLRHEISELQQRLQEAENRNQ--ELSQSVSSTARPLLRQIENLQATlgsqtss 566
Cdd:PTZ00121 1488 AKKKAEEAKKKAdeAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKA------- 1560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 567 wETLEKSLSDRLGESQTLLAAAVERERAATEEllANKIQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQv 646
Cdd:PTZ00121 1561 -EEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE- 1636
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1720417759 647 ELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKtifTQEALKEKDHK 700
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK---AEEAKKAEEDE 1687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
392-701 |
2.37e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 392 KEEVEKQ---HRENIKKLNSVVERQEKDLGRLQVDMDELEE----KSRSTQAALDSAYRELTDLHKA-----NAAKDSEV 459
Cdd:TIGR02168 174 RKETERKlerTRENLDRLEDILNELERQLKSLERQAEKAERykelKAELRELELALLVLRLEELREEleelqEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 460 QEAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQaaarkedylrhEISELQQRLQEAENRNQELS 539
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ-----------QKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 540 QSVSSTARPLLRQIENLqATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQE 619
Cdd:TIGR02168 323 AQLEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 620 NSRLQAQLESEKNKLRKLEDENSRYQVELENL-KDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKEKD 698
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
...
gi 1720417759 699 HKL 701
Cdd:TIGR02168 482 REL 484
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
248-576 |
3.14e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 3.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 248 KEKAL--LEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNS-SQTAD 324
Cdd:TIGR02168 174 RKETErkLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEElKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 325 LLKEKDEQIQglmEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRkakeLEEELQHLRQVLDGKEEVEKQHRENIK 404
Cdd:TIGR02168 254 ELEELTAELQ---ELEEKLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 405 KLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQE-----AALRREMKAKEELSGALE 479
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 480 KAQEEARQQQEALVLQVGDLRLALQRAE-QAAARKEDYLRHEISELQQRLQEAENRNQELSQSVsSTARPLLRQIENLQA 558
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREEL-EEAEQALDAAERELA 485
|
330
....*....|....*...
gi 1720417759 559 TLGSQTSSWETLEKSLSD 576
Cdd:TIGR02168 486 QLQARLDSLERLQENLEG 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
232-456 |
4.44e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE 311
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ELATRL-----NSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKdkdnenvIAKLNRKAKELEEELQHLR 386
Cdd:COG4942 105 ELAELLralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD-------LAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 387 QVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKD 456
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-652 |
5.49e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 5.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 310 KEELAT-RLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQlhnsniikKLRAKDKDNENVIakLNRKAKELEEELQHLRQV 388
Cdd:TIGR02169 176 LEELEEvEENIERLDLIIDEKRQQLERLRREREKAERYQ--------ALLKEKREYEGYE--LLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 389 LDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDEL-EEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAAlRRE 467
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE-ERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 468 MKAKEELSGALEKAQEEARQQQEalvlqvgdlrLALQRAEQAAARKEdyLRHEISELQQRLQEAENRNQELSQSVSSTAR 547
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEE----------ERKRRDKLTEEYAE--LKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 548 PLLRQIENLQATLGSQTSSWETLEKsLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQENSRLQAQL 627
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQR-LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|....*
gi 1720417759 628 ESEKNKLRKLEDENSRYQVELENLK 652
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
221-578 |
6.95e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.59 E-value: 6.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 221 EKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERD 300
Cdd:PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 301 AAKKEMKTIK-EELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQlhnsniikklrakdkdnENVIAKLNR--KAKE 377
Cdd:PRK02224 444 EAEALLEAGKcPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV-----------------EEVEERLERaeDLVE 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 378 LEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDS 457
Cdd:PRK02224 507 AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 458 EVQE-AALRREMKAKEELSGALEKAQEEARQQQEalvlqvgdlrLALQRAEQAAARKE--DYLRHE-----ISELQQRLQ 529
Cdd:PRK02224 587 RIESlERIRTLLAAIADAEDEIERLREKREALAE----------LNDERRERLAEKRErkRELEAEfdearIEEAREDKE 656
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1720417759 530 EAEnrnqELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEkSLSDRL 578
Cdd:PRK02224 657 RAE----EYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERR 700
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
248-666 |
1.17e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 248 KEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQL--ACKERDAAKKEMKTIKEELatrlnssqtaDL 325
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERL----------EE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 326 LKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDK-DNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIK 404
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 405 KLNSVVERQEKD---------------LGRLQVDMDELEEKSRS------TQAALDSAYRELTDLHKANAAKDSEVQEAA 463
Cdd:COG4717 231 QLENELEAAALEerlkearlllliaaaLLALLGLGGSLLSLILTiagvlfLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 464 LRREMKAKEELSGALEK---AQEEARQQQEALVLQVGDLRLALQRAEQAAAR-KEDYLRHEISELQQRLQEAENRNQELS 539
Cdd:COG4717 311 PALEELEEEELEELLAAlglPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRAA 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 540 QSVSSTARPLLRQIENLQATLGSQTSSWETL-----EKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNT 614
Cdd:COG4717 391 LEQAEEYQELKEELEELEEQLEELLGELEELlealdEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1720417759 615 LlrqenSRLQAQLESEKNKLRKLEDENSRYQVELENLKdeyvRTLEESRKEK 666
Cdd:COG4717 471 L-----AELLQELEELKAELRELAEEWAALKLALELLE----EAREEYREER 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
217-547 |
2.23e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 217 KAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEaYDNLKDEM--FRVKEESSSISSL---KDEFTQRIAEAEKK 291
Cdd:TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKreYEGYELLKEKEALerqKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 292 VQLACKERDAAKKEMKTIK---EELATRLN--SSQTADLLKEKDEQIQG-----------LMEEGEKLSKQQLHNSNIIK 355
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEqllEELNKKIKdlGEEEQLRVKEKIGELEAeiaslersiaeKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 356 KLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGK----EEVEKQHRENIKKLNSVVERQEKdlgrLQVDMDELEEKS 431
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEK----LKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 432 RSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEelsgalekaQEEARQQQEALVLQVGDLRLALQRAEQAAA 511
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE---------IKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720417759 512 RKEDylrhEISELQQRLQEAENRNQELSQSVSSTAR 547
Cdd:TIGR02169 480 RVEK----ELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
317-551 |
2.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 317 LNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVE 396
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 397 KQHRENIKKLNSVVERQEKDLGRL-QVDMDELEEKSRSTQAALDSA--YRELTDLHKANAAKDSEVQE--AALRREMKAK 471
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAelAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 472 EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPLLR 551
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
352-498 |
2.62e-07 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 54.45 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 352 NIIKKLRA---KDKDN-ENVIAKLNRKAKELEEELQHLRQVLdgkEEVEKQHRENIKKLNSVVERQEKDLGRLQVdmdEL 427
Cdd:PRK00409 502 NIIEEAKKligEDKEKlNELIASLEELERELEQKAEEAEALL---KEAEKLKEELEEKKEKLQEEEDKLLEEAEK---EA 575
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720417759 428 EEKSRSTQAALDSAYRELTDLHKANAA--KDSEVQEAalRREMKAKEELsgaLEKAQEEARQQQEAlvLQVGD 498
Cdd:PRK00409 576 QQAIKEAKKEADEIIKELRQLQKGGYAsvKAHELIEA--RKRLNKANEK---KEKKKKKQKEKQEE--LKVGD 641
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
221-488 |
3.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 221 EKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERD 300
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 301 AAKKEMKTIKEELAtrlnssQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEE 380
Cdd:TIGR02168 835 ATERRLEDLEEQIE------ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 381 ELQHLRQVLDGKEEVEKQHRENIKKLNSVVER-QEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKA-------N 452
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKikelgpvN 988
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1720417759 453 AAKDSEVQEAALRRE---------MKAKEELSGALEKAQEEARQQ 488
Cdd:TIGR02168 989 LAAIEEYEELKERYDfltaqkedlTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
227-703 |
3.67e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 227 KTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLAcKERDAAKKEM 306
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS-EFYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 307 KTIKEELAtrlNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNR----KAKELEEEL 382
Cdd:PRK03918 310 REIEKRLS---RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlKKRLTGLTP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 383 QHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAaldsAYRELTDLHKANAAKDsevQEA 462
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV----CGRELTEEHRKELLEE---YTA 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 463 ALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLaLQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQsV 542
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL-KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK-L 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 543 SSTARPLLRQIENLQATlgsqTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELlankiqmssvesqntllrqeNSR 622
Cdd:PRK03918 538 KGEIKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELLKELEELGFESVEEL--------------------EER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 623 LQaQLESEKNKLRKLEDENSRYQVELENLKDEYvRTLEESRKEKTLLSSQLEMERMKVEQERKKtiFTQEALKEKDHKLF 702
Cdd:PRK03918 594 LK-ELEPFYNEYLELKDAEKELEREEKELKKLE-EELDKAFEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYL 669
|
.
gi 1720417759 703 S 703
Cdd:PRK03918 670 E 670
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
232-653 |
3.68e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE 311
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKS 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ELATrLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDG 391
Cdd:TIGR04523 296 EISD-LNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEK 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 392 KEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEaaLRREMKAK 471
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD--LTNQDSVK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 472 EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKE-----------------DYLRHEISELQQRLQEAENR 534
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEkelkklneekkeleekvKDLTKKISSLKEKIEKLESE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 535 NQELSQSVSSTARPLLRQIENLQATL--------GSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQM 606
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELKKENlekeidekNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1720417759 607 SSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKD 653
Cdd:TIGR04523 613 SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
234-869 |
5.39e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.69 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 234 EKLEKRETQLLSLSKEKALLEEAYdnlKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQlacKERDAAKKEMKTIKEEL 313
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWK---EKRDELNGELSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 314 AtrlNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNsniikkLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDgke 393
Cdd:pfam12128 318 A---KDRSELEALEDQHGAFLDADIETAAADQEQLPS------WQSELENLEERLKALTGKHQDVTAKYNRRRSKIK--- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 394 evekqhreniKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRRE------ 467
Cdd:pfam12128 386 ----------EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELklrlnq 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 468 MKAKEELSGALEKAQEEARQQQEALVlQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTAR 547
Cdd:pfam12128 456 ATATPELLLQLENFDERIERAREEQE-AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 548 PLLrqienlqATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATE------ELLANKIQMSSVESQNTLLRQENS 621
Cdd:pfam12128 535 TLL-------HFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGElnlygvKLDLKRIDVPEWAASEEELRERLD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 622 RLQAQLESEKNKLRKLEDENSRYQVELENLKdeyvrtLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKEKDHKL 701
Cdd:pfam12128 608 KAEEALQSAREKQAAAEEQLVQANGELEKAS------REETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAN 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 702 FSVCSTptmsrsssisgvdAAGLQASFLSQDESHDHSFGPMSTSASGSNLYEAVRMGAGS----SIIENLQSQLKLREGE 777
Cdd:pfam12128 682 ERLNSL-------------EAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDaqlaLLKAAIAARRSGAKAE 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 778 ISHLQLEISNLEKTRSIMSEELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYN-TILQMYGEKAEEAEELRLDLEDVKN 856
Cdd:pfam12128 749 LKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQeTWLQRRPRLATQLSNIERAISELQQ 828
|
650
....*....|...
gi 1720417759 857 MYKTQIDELLRQR 869
Cdd:pfam12128 829 QLARLIADTKLRR 841
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
427-652 |
1.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 427 LEEksRSTQAALDSAYRELTDLHKA-NAAKDSEVQEAALRREMKAKEELSGALEKAqEEARQQQEALVLQVGDLRLALQR 505
Cdd:COG4913 218 LEE--PDTFEAADALVEHFDDLERAhEALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 506 AEQAAARKE-DYLRHEISELQQRLQEAENRNQELSQSVSS----TARPLLRQIENLQATLGSQTSSWETLEKSLsDRLGE 580
Cdd:COG4913 295 AELEELRAElARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERRRARLEALL-AALGL 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720417759 581 SQTLlaaavereraATEELLANKIQmssVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLK 652
Cdd:COG4913 374 PLPA----------SAEEFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
252-695 |
1.30e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 252 LLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDA-------AKKEMKTIKEELATRLNSSQTAD 324
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAmadirrrESQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 325 LLKEkdEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAK-------------------LNRKAKELEEELQHL 385
Cdd:pfam15921 159 CLKE--DMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKkiyehdsmstmhfrslgsaISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 386 R-QVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRL----QVDMDELEEKSRSTQAALDSAYRELTDLHkanaaKDSEVQ 460
Cdd:pfam15921 237 KgRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLisehEVEITGLTEKASSARSQANSIQSQLEIIQ-----EQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 461 EAALRREMKAKEELSGALEKAQEEARQQQEALVLQVgDLRLALQRAEQAAARKE-DYLRHEI----SELQQRLQEAENRN 535
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL-EKQLVLANSELTEARTErDQFSQESgnldDQLQKLLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 536 QELSQSVSSTARPLLRQIENlqatlgsqTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELlanKIQMSSVESQNTL 615
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGN--------SITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM---ERQMAAIQGKNES 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 616 LRQENSrLQAQLESEKNKLRKLEDENSRYQVELENLK----------DEYVRTLEESRKEKTLLSSQL-----EMERMKV 680
Cdd:pfam15921 460 LEKVSS-LTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdltaslQEKERAIEATNAEITKLRSRVdlklqELQHLKN 538
|
490
....*....|....*.
gi 1720417759 681 EQERKKTIFTQ-EALK 695
Cdd:pfam15921 539 EGDHLRNVQTEcEALK 554
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
243-482 |
2.20e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 243 LLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATrlNSSQT 322
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE--LEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 323 ADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHREN 402
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 403 IKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEELSGALEKAQ 482
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
368-560 |
5.22e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 5.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 368 IAKLNRKAKELEEELQHLRQ---VLDGKEEvEKQHRENIKKLNSvverqekDLGRLQVDMDELEEKSRSTQAALDSAYRE 444
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQkngLVDLSEE-AKLLLQQLSELES-------QLAEARAELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 445 LTDLHKANAAKDSEVQEAALRREMKAKEELSG----ALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHE 520
Cdd:COG3206 256 LPELLQSPVIQQLRAQLAELEAELAELSARYTpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQ 335
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720417759 521 ISELQQRLQEAENRNQELSQsvsstarpLLRQIENLQATL 560
Cdd:COG3206 336 LAQLEARLAELPELEAELRR--------LEREVEVARELY 367
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
354-677 |
7.66e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 7.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 354 IKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRS 433
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 434 TQAALDSAYRELTDLHKANAAKDSEVQEAAlrREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARK 513
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 514 EDYL---RHEISELQQRLQEAENRNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVE 590
Cdd:pfam02463 327 EKELkkeKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 591 RERAAT-----EELLANKIQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKE 665
Cdd:pfam02463 407 AQLLLElarqlEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
330
....*....|..
gi 1720417759 666 KTLLSSQLEMER 677
Cdd:pfam02463 487 ELLLSRQKLEER 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
221-857 |
8.04e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 221 EKEDVCKTVEFLNEKLEKRETQLLSLSKE-KALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKER 299
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 300 DAAKKEMKTIKEELAT-RLNSSQTADLLKEKDEQIQGLMEEGEKLSKQqlhnsniIKKLRAKDKDNENVIAKLNRKAKEL 378
Cdd:TIGR02169 332 DKLLAEIEELEREIEEeRKRRDKLTEEYAELKEELEDLRAELEEVDKE-------FAETRDELKDYREKLEKLKREINEL 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 379 EEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSE 458
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 459 VQEaaLRREMKAKEELSGALEKAQEEARQQQEAL----------VLQVGDLRLALQRAEQAAA---------RKEDYLRH 519
Cdd:TIGR02169 485 LSK--LQRELAEAEAQARASEERVRGGRAVEEVLkasiqgvhgtVAQLGSVGERYATAIEVAAgnrlnnvvvEDDAVAKE 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 520 EISELQQR-------LQEAENRNQELSQSVSSTA----------------RPLLRQI-------ENLQA----------- 558
Cdd:TIGR02169 563 AIELLKRRkagratfLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyEPAFKYVfgdtlvvEDIEAarrlmgkyrmv 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 559 -------------TLGSQTSSWETL--------EKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLR 617
Cdd:TIGR02169 643 tlegelfeksgamTGGSRAPRGGILfsrsepaeLQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 618 QENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEyVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQ-EALKE 696
Cdd:TIGR02169 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEiQAELS 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 697 KDHKLFSVCSTPTMSRSSSISGVDAAGLQASFLSQDESHDHSFGPMSTSASGSNLYEA-VRMGAGSSIIENLQSQLKLRE 775
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLnGKKEELEEELEELEAALRDLE 881
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 776 GEISHLQLEISNLEKTRSIMSEELVKLTNQNDELEEKVKEipkLRVQLRDLDQRYNTILQMYGEKAEEAEELrLDLEDVK 855
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE---LKAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQ 957
|
..
gi 1720417759 856 NM 857
Cdd:TIGR02169 958 AE 959
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
227-501 |
1.27e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 227 KTVEFLNEKLEKRETQLlslskekallEEAYDNLKDemFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEM 306
Cdd:COG3206 175 KALEFLEEQLPELRKEL----------EEAEAALEE--FRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 307 KTIKEELATRLNSSQTAdllkEKDEQIQGLMEEGEKLSKQqlhnsniIKKLRAKDKDNENVIAKLNRKAKELEEELQhlr 386
Cdd:COG3206 243 AALRAQLGSGPDALPEL----LQSPVIQQLRAQLAELEAE-------LAELSARYTPNHPDVIALRAQIAALRAQLQ--- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 387 qvldgkeevekqhrenikklnsvvERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKAnaakdsEVQEAALRR 466
Cdd:COG3206 309 ------------------------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL------EAELRRLER 358
|
250 260 270
....*....|....*....|....*....|....*
gi 1720417759 467 EMKAKEELSGALEKAQEEARQQQEalvLQVGDLRL 501
Cdd:COG3206 359 EVEVARELYESLLQRLEEARLAEA---LTVGNVRV 390
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-696 |
1.33e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 477 ALEKAQEEARQQQEALVLQVGDLRLALQRAEQaaarKEDYLRHEISELQQRLQEAENRNQELSQsvsstarpllrQIENL 556
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKK----EEKALLKQLAALERRIAALARRIRALEQ-----------ELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 557 QATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQENSRLQAQ---LESEKNK 633
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaeeLRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720417759 634 LRKLEDENSRYQVELENLKDEYV---RTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEALKE 696
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEeerAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
240-497 |
1.60e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 240 ETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNS 319
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 320 SQTAD--------LLKEKDeqIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDG 391
Cdd:COG3883 95 LYRSGgsvsyldvLLGSES--FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 392 KEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAK 471
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAA 252
|
250 260
....*....|....*....|....*.
gi 1720417759 472 EELSGALEKAQEEARQQQEALVLQVG 497
Cdd:COG3883 253 GAAGAAAGSAGAAGAAAGAAGAGAAA 278
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
232-697 |
2.24e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVqlackerdaaKKEMKTIKE 311
Cdd:pfam01576 136 LEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERL----------KKEEKGRQE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 -ELATRLNSSQTADLlkekDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLd 390
Cdd:pfam01576 206 lEKAKRKLEGESTDL----QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDL- 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 391 gkeEVEKQHRENikklnsvVERQEKDLG-RLQVDMDELEEKSRSTQAALD---SAYRELTDLHKA--NAAKDSEVQEAAL 464
Cdd:pfam01576 281 ---ESERAARNK-------AEKQRRDLGeELEALKTELEDTLDTTAAQQElrsKREQEVTELKKAleEETRSHEAQLQEM 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 465 R-REMKAKEELSGALEKAQ------EEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQE 537
Cdd:pfam01576 351 RqKHTQALEELTEQLEQAKrnkanlEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAE 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 538 LSQSVSStarpLLRQIENLQATLGSQTSSWETLEK---SLSDRLGESQTLLAAAVERERAAT--------------EELL 600
Cdd:pfam01576 431 LAEKLSK----LQSELESVSSLLNEAEGKNIKLSKdvsSLESQLQDTQELLQEETRQKLNLStrlrqledernslqEQLE 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 601 ANKIQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYV-RTLEESRKEKTLLSSQLEMERMK 679
Cdd:pfam01576 507 EEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEeKAAAYDKLEKTKNRLQQELDDLL 586
|
490
....*....|....*...
gi 1720417759 680 VEQERKKTIFTQEALKEK 697
Cdd:pfam01576 587 VDLDHQRQLVSNLEKKQK 604
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
297-828 |
6.25e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 6.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 297 KERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAK 376
Cdd:TIGR00606 193 QVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 377 EL---EEELQHLRQVLDGK------------EEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSA 441
Cdd:TIGR00606 273 ALksrKKQMEKDNSELELKmekvfqgtdeqlNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 442 YRELTDLHKANAAKDSEVQEAALRREMKAKEE---LSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLR 518
Cdd:TIGR00606 353 QLQADRHQEHIRARDSLIQSLATRLELDGFERgpfSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIR 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 519 HEISELQQRLQeaeNRNQELSQSVSSTaRPLLRQIENLQATLGSQTSSWETLEKSLSD--RLGESQTLLAAAVERERAAT 596
Cdd:TIGR00606 433 DEKKGLGRTIE---LKKEILEKKQEEL-KFVIKELQQLEGSSDRILELDQELRKAERElsKAEKNSLTETLKKEVKSLQN 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 597 EELLANKIQMSSVESQNTLLRQENSRLQAQLESEK--NKLRKLEDENSRYQVELENL------KDEYVRTLEESRKEKTL 668
Cdd:TIGR00606 509 EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDkmDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQ 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 669 LSSQL---EMERMKVEQERKKTIFTQEALKEK----DHKLFSVCSTPTM-------------SRSSSISGVDAAGLQASF 728
Cdd:TIGR00606 589 TRDRLaklNKELASLEQNKNHINNELESKEEQlssyEDKLFDVCGSQDEesdlerlkeeiekSSKQRAMLAGATAVYSQF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 729 LSQDESHDHSFGPMSTSASGSNlyeavrmGAGSSIIENLQSQLKLREGEISHLQLEISNLEKTRSIMseeLVKLTNQNDE 808
Cdd:TIGR00606 669 ITQLTDENQSCCPVCQRVFQTE-------AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM---LGLAPGRQSI 738
|
570 580
....*....|....*....|
gi 1720417759 809 LEEKVKEIPKLRVQLRDLDQ 828
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNR 758
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-584 |
9.42e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 415 KDLGRLQVDMDELEEK------SRSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQ 488
Cdd:COG4913 235 DDLERAHEALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 489 QEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQ-------SVSSTARPLLRQIENLQATLG 561
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAllaalglPLPASAEEFAALRAEAAALLE 394
|
170 180
....*....|....*....|...
gi 1720417759 562 SQTSSWETLEKSLSDRLGESQTL 584
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDL 417
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
311-537 |
1.03e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 311 EELATRLNssQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIiKKLRAKDKDNENVIAKLNRKAKELEE------ELQH 384
Cdd:COG4913 613 AALEAELA--ELEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERldassdDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 385 LRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDsevqeaal 464
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD-------- 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 465 RREMKAKEELSGALEKAQEEARQQQEALVLQ-----------VGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAEN 533
Cdd:COG4913 762 AVERELRENLEERIDALRARLNRAEEELERAmrafnrewpaeTADLDADLESLPEYLALLDRLEEDGLPEYEERFKELLN 841
|
....
gi 1720417759 534 RNQE 537
Cdd:COG4913 842 ENSI 845
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
324-691 |
1.12e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 324 DLLKEKDEQIQGLMEEGEKLSKQqlhNSNIIKKLRAKDKDNENVIAKL--NRKAKELEEELQHLRQVLDGKEEVekqhRE 401
Cdd:TIGR01612 1118 DDIKNLDQKIDHHIKALEEIKKK---SENYIDEIKAQINDLEDVADKAisNDDPEEIEKKIENIVTKIDKKKNI----YD 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 402 NIKKLNSVVERQEKD-----------------LGRLQVD-MDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ-EA 462
Cdd:TIGR01612 1191 EIKKLLNEIAEIEKDktsleevkginlsygknLGKLFLEkIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGiEM 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 463 ALRREMKAKEELSGALEKAQEEARQQQEAlvlqVGDLRLALQRAEQAAARKEDyLRHEISELQQRLQEAENRNQELSQSV 542
Cdd:TIGR01612 1271 DIKAEMETFNISHDDDKDHHIISKKHDEN----ISDIREKSLKIIEDFSEESD-INDIKKELQKNLLDAQKHNSDINLYL 1345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 543 SSTARPL----LRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAAT-----EELLANK-----IQmSS 608
Cdd:TIGR01612 1346 NEIANIYnilkLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEEckskiESTLDDKdidecIK-KI 1424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 609 VESQNTLLRQE---NSRLQAQLESEKNKL---RKLEDENSRYQVELENLKD-----------EYVRTLEESRKEKTllss 671
Cdd:TIGR01612 1425 KELKNHILSEEsniDTYFKNADENNENVLllfKNIEMADNKSQHILKIKKDnatndhdfninELKEHIDKSKGCKD---- 1500
|
410 420
....*....|....*....|
gi 1720417759 672 qlEMERMKVEQERKKTIFTQ 691
Cdd:TIGR01612 1501 --EADKNAKAIEKNKELFEQ 1518
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
360-696 |
1.20e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 360 KDKDNENVIAKLNRKAKELEEELQHLrqvldgkEEVEKQHRENIKKLNSVVERQEKDLGRLqvdmDELEEKSRSTQAALD 439
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERY-------EEQREQARETRDEADEVLEEHEERREEL----ETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 440 SAYRELTDLHKANAAKDSEVQE-AALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDlRLALQRAEQAAARKE-DYL 517
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEElEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD-RLEECRVAAQAHNEEaESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 518 RHEISELQQRLQEAENRNQELSQSVSSTArpllRQIENLQATLGSQTSSWETLEKSLSD---RLGESQTLLaaaverera 594
Cdd:PRK02224 348 REDADDLEERAEELREEAAELESELEEAR----EAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFL--------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 595 atEELLANKIQmssvesqntlLRQENSRLQAQLESEKNKLRK---LEDENSRYQVELENLKDEYVRTLEESRKEKTLLSS 671
Cdd:PRK02224 415 --EELREERDE----------LREREAELEATLRTARERVEEaeaLLEAGKCPECGQPVEGSPHVETIEEDRERVEELEA 482
|
330 340
....*....|....*....|....*
gi 1720417759 672 QLEMERMKVEqERKKTIFTQEALKE 696
Cdd:PRK02224 483 ELEDLEEEVE-EVEERLERAEDLVE 506
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
236-705 |
1.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 236 LEKRETQLLS-LSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE--- 311
Cdd:pfam15921 322 LESTVSQLRSeLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEqnk 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ------------------ELATRLNSSQTAD-LLKEKDEQIQGLME------EGEKLSKQQLhnSNIIKKLRAKDKDNEN 366
Cdd:pfam15921 402 rlwdrdtgnsitidhlrrELDDRNMEVQRLEaLLKAMKSECQGQMErqmaaiQGKNESLEKV--SSLTAQLESTKEMLRK 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 367 VIAKLNRKAKELEEE---LQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELeeksRSTQAALDSAYR 443
Cdd:pfam15921 480 VVEELTAKKMTLESSertVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL----RNVQTECEALKL 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 444 ELTDlhkanaaKDSEVQeaALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRheisE 523
Cdd:pfam15921 556 QMAE-------KDKVIE--ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR----E 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 524 LQQRLQEAENRNQELSQSVSSTARP----------LLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERER 593
Cdd:pfam15921 623 LEARVSDLELEKVKLVNAGSERLRAvkdikqerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 594 AATEELLANKIQMSSVESQN-------TLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEE---SR 663
Cdd:pfam15921 703 SAQSELEQTRNTLKSMEGSDghamkvaMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstVA 782
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1720417759 664 KEKTLLSSQLEMERMKvEQERKKTIFTQEALKEKDHKLFSVC 705
Cdd:pfam15921 783 TEKNKMAGELEVLRSQ-ERRLKEKVANMEVALDKASLQFAEC 823
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
465-701 |
1.35e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 465 RREMKAKEELsgalekaqEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLrheisELQQRLQEAENrnQELSQSVSS 544
Cdd:TIGR02169 170 RKKEKALEEL--------EEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-----ALLKEKREYEG--YELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 545 tarpLLRQIENLQATLGSQTSSWETLEKSLSDRLGES----QTLLAAAVERERAATEELLANKIQMSSVESQNTLLRQEN 620
Cdd:TIGR02169 235 ----LERQKEAIERQLASLEEELEKLTEEISELEKRLeeieQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 621 SRLQAQLESEKNKLRKLEDENSRYQVELENLKdeyvRTLEESRKEKTLLSSQ-------LEMERMKVEQERKKTIFTQEA 693
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELE----REIEEERKRRDKLTEEyaelkeeLEDLRAELEEVDKEFAETRDE 386
|
....*...
gi 1720417759 694 LKEKDHKL 701
Cdd:TIGR02169 387 LKDYREKL 394
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
376-563 |
1.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 376 KELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAK 455
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 456 DSEVQEAALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRN 535
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190
....*....|....*....|....*....|.
gi 1720417759 536 QELSQSVSSTAR---PLLRQIENLQATLGSQ 563
Cdd:COG4717 209 AELEEELEEAQEeleELEEELEQLENELEAA 239
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
368-543 |
1.63e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 368 IAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLnsvverqEKDLGRLQVDMDELEEKSRSTQAALDSA--YREL 445
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDL-------EKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 446 TdlhkanaakdsevqeaALRREMKAKEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 525
Cdd:COG1579 92 E----------------ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
170
....*....|....*...
gi 1720417759 526 QRLQEAENRNQELSQSVS 543
Cdd:COG1579 156 AELEELEAEREELAAKIP 173
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
326-513 |
1.64e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.15 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 326 LKEKDEQIQGLMEEGEKLSKQQLHNsniiKKLRAKDKdNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKK 405
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAEAIKKE----ALLEAKEE-IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 406 LNSVVERQEKDLGRLQVDMDELEEksrstqaaldsayrELTDLHKANAAKDSEVqeAALRREmKAKEELsgaLEKAQEEA 485
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEE--------------ELEELIEEQLQELERI--SGLTAE-EAKEIL---LEKVEEEA 167
|
170 180
....*....|....*....|....*...
gi 1720417759 486 RQQQEALVlqvgdlRLALQRAEQAAARK 513
Cdd:PRK12704 168 RHEAAVLI------KEIEEEAKEEADKK 189
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
227-415 |
2.34e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 227 KTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKV---------QLACK 297
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkddfelkkENLEK 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 298 ERDAAKKEMKTIKEELATRLNS-SQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAK 376
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLKKKqEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1720417759 377 ELEEELQHLRQVLDG----KEEVEKQHRENIKKLNSVVERQEK 415
Cdd:TIGR04523 642 KLKQEVKQIKETIKEirnkWPEIIKKIKESKTKIDDIIELMKD 684
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
189-698 |
2.35e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 189 LASPTAGSGGHSASGPATEQCEAVENQPKAPPEKEDVCKTVEFLNEKLEKRETQLLSlskEKALLEEAYDNLKD--EMFR 266
Cdd:pfam10174 92 LLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIET---QKQTLGARDESIKKllEMLQ 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 267 VKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRL----NSSQTADL----------------- 325
Cdd:pfam10174 169 SKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNqlqpDPAKTKALqtviemkdtkisslern 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 326 LKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKK 405
Cdd:pfam10174 249 IRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEV 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 406 LNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQEaaLRREMKAKEELSGALEKAQEEA 485
Cdd:pfam10174 329 LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRD--LKDMLDVKERKINVLQKKIENL 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 486 RQQQEALVLQVGDLR--------------LALQRAEQAAARKE---DYLRHEIS-ELQQRLQEAEN---RNQELSQSVSS 544
Cdd:pfam10174 407 QEQLRDKDKQLAGLKervkslqtdssntdTALTTLEEALSEKEriiERLKEQRErEDRERLEELESlkkENKDLKEKVSA 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 545 TARPLLRQ---IENLQATLGSQTSSWE-----------TLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQmsSVE 610
Cdd:pfam10174 487 LQPELTEKessLIDLKEHASSLASSGLkkdsklksleiAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIR--LLE 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 611 SQNTLLRQENSRLQAQLESEKNKLRKLEDEnsryqvelENLKDEYVRTLEE--SRKEKTLLSSQLEMERMKVEQERKKTI 688
Cdd:pfam10174 565 QEVARYKEESGKAQAEVERLLGILREVENE--------KNDKDKKIAELESltLRQMKEQNKKVANIKHGQQEMKKKGAQ 636
|
570
....*....|
gi 1720417759 689 FTQEALKEKD 698
Cdd:pfam10174 637 LLEEARRRED 646
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
371-701 |
3.18e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 371 LNRKAKELEEELQHLrqvldgkeevEKQHRENIKKLNSVVE--RQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDl 448
Cdd:PRK04863 312 MARELAELNEAESDL----------EQDYQAASDHLNLVQTalRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEE- 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 449 hkaNAAKDSEVQEAALRremkAKEELSG---ALEKAQEEARQQQEALVL------QVGDLRLALQRAE---QAAARKEDY 516
Cdd:PRK04863 381 ---NEARAEAAEEEVDE----LKSQLADyqqALDVQQTRAIQYQQAVQAlerakqLCGLPDLTADNAEdwlEEFQAKEQE 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 517 LRHEISELQQRLQEAENRNQELSQSVSS---------------TARPLLRQIENLQAtLGSQTSSWETLEKSLSDRLGES 581
Cdd:PRK04863 454 ATEELLSLEQKLSVAQAAHSQFEQAYQLvrkiagevsrseawdVARELLRRLREQRH-LAEQLQQLRMRLSELEQRLRQQ 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 582 QTLL-----------------AAAVERERAATEELLANKIQMSSVESQNTLLRQEnsrlQAQLESEKNKLRKLEDENSRY 644
Cdd:PRK04863 533 QRAErllaefckrlgknlddeDELEQLQEELEARLESLSESVSEARERRMALRQQ----LEQLQARIQRLAARAPAWLAA 608
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720417759 645 QVELENLKDEYVRTLEESRKEKTLLSSQLEMERmKVEQERKKTIFTQEALKEKDHKL 701
Cdd:PRK04863 609 QDALARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVERDELAARKQALDEEIERL 664
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
324-569 |
3.19e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 324 DLLKEKDEQIQGLMEEGEKLSKQqlhnsniIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENI 403
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAE-------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 404 KKLNSVVERQEKDLGRLQV-----DMDELEEKSRSTQAALDSAYRELTDLHKANAAKdsEVQEAALRREMKAKEELSGAL 478
Cdd:COG3883 89 GERARALYRSGGSVSYLDVllgseSFSDFLDRLSALSKIADADADLLEELKADKAEL--EAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 479 EKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPLLRQIENLQA 558
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASA 246
|
250
....*....|.
gi 1720417759 559 TLGSQTSSWET 569
Cdd:COG3883 247 AGAGAAGAAGA 257
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
367-690 |
3.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 367 VIAKLNRKAKELEEELQHLRQVlDGKEEVEKQHRENIkklnSVVERQEKDLGRLQVDMDELEEKSRstqaaldsayrelt 446
Cdd:pfam17380 335 IYAEQERMAMERERELERIRQE-ERKRELERIRQEEI----AMEISRMRELERLQMERQQKNERVR-------------- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 447 dlHKANAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQealvlqvgdlrlaLQRAEQAAARKEDYLRHEISELQQ 526
Cdd:pfam17380 396 --QELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE-------------VRRLEEERAREMERVRLEEQERQQ 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 527 -----RLQEAENRNQELSQSVSSTARPLLRQIENlqatlgsqtsswETLEKSLSDRlgesqtllaaaverERAATEELLA 601
Cdd:pfam17380 461 qverlRQQEEERKRKKLELEKEKRDRKRAEEQRR------------KILEKELEER--------------KQAMIEEERK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 602 NKIQMSSVESQNTLLRQENSRLQAqlESEKNKLRKLEdENSRYQVELENLKDEYVRtLEESRKEKTLLSSQLEMERMKVE 681
Cdd:pfam17380 515 RKLLEKEMEERQKAIYEEERRREA--EEERRKQQEME-ERRRIQEQMRKATEERSR-LEAMEREREMMRQIVESEKARAE 590
|
....*....
gi 1720417759 682 QERKKTIFT 690
Cdd:pfam17380 591 YEATTPITT 599
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
303-674 |
4.51e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 303 KKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEE--GEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEE 380
Cdd:COG5185 178 KLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNlgSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 381 ELQhlrQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ 460
Cdd:COG5185 258 LVE---QNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKRET 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 461 EAALRREMKAKEELSGALEKAQEEARQQQEALVLQVgDLRLALQRAEQAaarkEDYLRHEISELQQRLQEAENRNQELSQ 540
Cdd:COG5185 335 ETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSF----KDTIESTKESLDEIPQNQRGYAQEILA 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 541 SVSSTARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEEllANKIQMSSVESQNTLLRQEN 620
Cdd:COG5185 410 TLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE--AYDEINRSVRSKKEDLNEEL 487
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1720417759 621 SRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLE 674
Cdd:COG5185 488 TQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILAL 541
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
260-486 |
4.73e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 260 LKDEMFRVKEESSSISSLKDEFT------QRIAEAEKKVQL------ACKERDAAKKEMKTIKEELATR--LNSSQTADL 325
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDdlerahEALEDAREQIELlepireLAERYAAARERLAELEYLRAALrlWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 326 LKEK----DEQIQGLMEEGEKLSKQqlhnsniIKKLRAKDKDNENVIAKL-NRKAKELEEELQHLRQVLDGKEEVEKQHR 400
Cdd:COG4913 293 LEAEleelRAELARLEAELERLEAR-------LDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 401 ENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYREL-TDLHKANAAKDSEVQE-AALRR--------EMKA 470
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAeAALRDLRRELRELEAEiASLERrksniparLLAL 445
|
250
....*....|....*.
gi 1720417759 471 KEELSGALEKAQEEAR 486
Cdd:COG4913 446 RDALAEALGLDEAELP 461
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
221-701 |
6.54e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 221 EKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERD 300
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 301 AAKKEMKTIKEELATRLnsSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNsniiKKLRAKDKDNENVIAKLNRKAKELEE 380
Cdd:pfam02463 413 LARQLEDLLKEEKKEEL--EILEEEEESIELKQGKLTEEKEELEKQELKL----LKDELELKKSEDLLKETQLVKLQEQL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 381 ELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ 460
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKL 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 461 EAALRREMKAKEELSGALEKAQEEAR--------------QQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQ 526
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKsiavleidpilnlaQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 527 RLQEAENRNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEE---LLANK 603
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEaeeLLADR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 604 IQMSSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRK----EKTLLSSQLEMERMK 679
Cdd:pfam02463 727 VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKveeeKEEKLKAQEEELRAL 806
|
490 500
....*....|....*....|..
gi 1720417759 680 VEQERKKTIFTQEALKEKDHKL 701
Cdd:pfam02463 807 EEELKEEAELLEEEQLLIEQEE 828
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
253-543 |
8.42e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 253 LEEAYDNLKDEMFRVKEESSSIsslkDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELatrlnssqtadllKEKDEQ 332
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSEL-------------PELREE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 333 IQGLMEEGEKLskqqlhnsniiKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVER 412
Cdd:PRK03918 223 LEKLEKEVKEL-----------EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 413 QEKDLgRLQVDMDELEEKSRSTQAALDSAYRELTDLHKanAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEAL 492
Cdd:PRK03918 292 AEEYI-KLSEFYEEYLDELREIEKRLSRLEEEINGIEE--RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1720417759 493 VLQVgdlrlalqRAEQAAARKEDYlrhEISELQQRLQEAENRNQELSQSVS 543
Cdd:PRK03918 369 AKKE--------ELERLKKRLTGL---TPEKLEKELEELEKAKEEIEEEIS 408
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
232-829 |
8.46e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDE-MFRVKEESSSISSLKDE-------FTQRIAEAEKKVQLACKERDAAK 303
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQNSMyMRQLSDLESTVSQLRSElreakrmYEDKIEELEKQLVLANSELTEAR 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 304 KEMKTIKEELATRlnssqtadllkekDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQ 383
Cdd:pfam15921 363 TERDQFSQESGNL-------------DDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 384 HLRQVLDG-KEEVEKQHRENIKKLNSVVERQEKdlgrlqvdMDELEEKSRSTQAALDSAYRELTdlHKANAAKDSEVQEA 462
Cdd:pfam15921 430 RLEALLKAmKSECQGQMERQMAAIQGKNESLEK--------VSSLTAQLESTKEMLRKVVEELT--AKKMTLESSERTVS 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 463 ALRREMKAKEElsgALEKAQEEARQQQEALVLQVGDLrlalqraeQAAARKEDYLRHEISELQQ-RLQEAENrnqelsqs 541
Cdd:pfam15921 500 DLTASLQEKER---AIEATNAEITKLRSRVDLKLQEL--------QHLKNEGDHLRNVQTECEAlKLQMAEK-------- 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 542 vSSTARPLLRQIENLQA-------TLGSQTSSWETLEKSLSDRLGESQTLlaaavereraateELLANKiqmssvesQNT 614
Cdd:pfam15921 561 -DKVIEILRQQIENMTQlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEF-------------KILKDK--------KDA 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 615 LLRQENSRLqAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVEQERKKTIFTQEAL 694
Cdd:pfam15921 619 KIRELEARV-SDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 695 KekdHKLFSVCSTPTMSRSS--SISGVDAAGLQasflsqdeshdhsfgpmstsasgsnlyeaVRMGagssiienLQSQLK 772
Cdd:pfam15921 698 K---MQLKSAQSELEQTRNTlkSMEGSDGHAMK-----------------------------VAMG--------MQKQIT 737
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720417759 773 LREGEISHLQLEISNLE-------KTRSIMSEELVKLTNQ----NDELEEKVKEIPKLRVQLRDLDQR 829
Cdd:pfam15921 738 AKRGQIDALQSKIQFLEeamtnanKEKHFLKEEKNKLSQElstvATEKNKMAGELEVLRSQERRLKEK 805
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
369-686 |
1.00e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 369 AKLNRKAKELEEELQ----HLRQVLDGKEEVEK--QHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAY 442
Cdd:COG3096 316 EELSARESDLEQDYQaasdHLNLVQTALRQQEKieRYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 443 RELTDLHKAnaakdSEVQEaalRREMKAKEELSgALEKAQEearqqqealVLQVGDLRLALQRAEQAAAR-KEDYLRHEI 521
Cdd:COG3096 396 SQLADYQQA-----LDVQQ---TRAIQYQQAVQ-ALEKARA---------LCGLPDLTPENAEDYLAAFRaKEQQATEEV 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 522 SELQQRLQEAE-NRNQ-----ELSQSVS---------STARPLLRQIENLQATLGSQtsswETLEKSLSDrlgesqtlla 586
Cdd:COG3096 458 LELEQKLSVADaARRQfekayELVCKIAgeversqawQTARELLRRYRSQQALAQRL----QQLRAQLAE---------- 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 587 aavereraaTEELLANkiqmssvesqntllRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEK 666
Cdd:COG3096 524 ---------LEQRLRQ--------------QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330 340
....*....|....*....|
gi 1720417759 667 TLLSSQLEMERMKVEQERKK 686
Cdd:COG3096 581 SELRQQLEQLRARIKELAAR 600
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
499-691 |
1.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 499 LRLALQRAEQAAARKEDYLRHEISELQQRLQEAEN-----RNQELSQSVSSTARPLLRQIENL-------QATLGSQTSS 566
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAaleefRQKNGLVDLSEEAKLLLQQLSELesqlaeaRAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 567 WETLEKSLSDRLGESQTLLAAAVERERAatEELLANKIQMSSVESQNT-------LLRQENSRLQAQLESEKNK-LRKLE 638
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLR--AQLAELEAELAELSARYTpnhpdviALRAQIAALRAQLQQEAQRiLASLE 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720417759 639 DENSRYQVELENLKDEYVRTLEESRKEKTLLSSQLEMERmkvEQERKKTIFTQ 691
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELPELEAELRRLER---EVEVARELYES 369
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
297-674 |
1.13e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 297 KERDAAKKEMKTIKEELATRLNSSQTAD-LLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAkdkdnENVIAKLNRKA 375
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEeELEELEAELEELREELEKLEKLLQLLPLYQELEAL-----EAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 376 KELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVER----QEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKA 451
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQlslaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 452 NAAKDSEVQEAALRREMKAKE----------ELSGALEKAQEEARQQQEALVLQVG-----DLRLALQRAEQAAARKEDY 516
Cdd:COG4717 229 LEQLENELEAAALEERLKEARlllliaaallALLGLGGSLLSLILTIAGVLFLVLGllallFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 517 LRHEISELQQRLQEAENRNQELSQSVS-STARPLLRQIENLQATLgsqtSSWETLEKSLsdRLGESQTLLAAAVERERAA 595
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSpEELLELLDRIEELQELL----REAEELEEEL--QLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 596 TEELLANKIQMSSVESQntlLRQENSRLQAQLESEKNKLRKLEDENSRYQV-----ELENLKDEYVRTLEESRKEKTLLS 670
Cdd:COG4717 383 DEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEELLEALDEEELeeeleELEEELEELEEELEELREELAELE 459
|
....
gi 1720417759 671 SQLE 674
Cdd:COG4717 460 AELE 463
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
234-490 |
1.15e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 234 EKLEKRETQLLSLSKEKALLEEAYDNLKD------EMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMK 307
Cdd:PRK02224 475 ERVEELEAELEDLEEEVEEVEERLERAEDlveaedRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 308 TIKEELAT-RLNSSQTADLLKEKDEQIQGLMEEGEKLSKqqlhnsniIKKLRAKDKDNENVIAKLNRKAKEL----EEEL 382
Cdd:PRK02224 555 EKREAAAEaEEEAEEAREEVAELNSKLAELKERIESLER--------IRTLLAAIADAEDEIERLREKREALaelnDERR 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 383 QHLRQVLDGKEEVEKQHREN-IKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLhkanaakdsevqe 461
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEArIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEL------------- 693
|
250 260
....*....|....*....|....*....
gi 1720417759 462 AALRREMKAKEELSGALEKAQEEARQQQE 490
Cdd:PRK02224 694 EELRERREALENRVEALEALYDEAEELES 722
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
211-698 |
1.80e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 211 AVENQPKAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKalleeayDNLKDEM-FRVKEESSSISSLKDEFTQRIAEAE 289
Cdd:pfam05483 167 SAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQA-------ENARLEMhFKLKEDHEKIQHLEEEYKKEINDKE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 290 KKVQLACKERDAAKKEMKTIKEELA-TRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQ----QLHNSNIIKKLRAKDKDN 364
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEeSRDKANQLEEKTKLQDENLKELIEKKDHLTKElediKMSLQRSMSTQKALEEDL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 365 ENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVV----ERQEKDLGRLQVDMDELEEKSRSTQAAL-- 438
Cdd:pfam05483 320 QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLrteqQRLEKNEDQLKIITMELQKKSSELEEMTkf 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 439 -DSAYRELTDLHKANAAK----DSEVQEAALRREMKAKE-ELSGALEKAQEE----------ARQQQEALVLQVGDLRLA 502
Cdd:pfam05483 400 kNNKEVELEELKKILAEDekllDEKKQFEKIAEELKGKEqELIFLLQAREKEihdleiqltaIKTSEEHYLKEVEDLKTE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 503 LQRAEQAAARKEDYLRHEISELQQRLQEAEN------RNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEKSLSD 576
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDmtlelkKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQ 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 577 RLGESQTLLAAAVERERAATEELLANKIQMSSVESQNTLLR--------------QENSRLQAQLESEKNKLRKLEDENS 642
Cdd:pfam05483 560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKkqienknknieelhQENKALKKKGSAENKQLNAYEIKVN 639
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720417759 643 RYQVELENLKDEYVRTLEESRKEktLLSSQLEMERMKVEQERKKTIFTQEALKEKD 698
Cdd:pfam05483 640 KLELELASAKQKFEEIIDNYQKE--IEDKKISEEKLLEEVEKAKAIADEAVKLQKE 693
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
607-850 |
1.84e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 607 SSVESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQ-----VELENLKDEYVRTLEESRKEKTLLSSQLEMERMKVE 681
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRqknglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 682 QERKKTIFTQEALkekdhklfsvcstPTMSRSSSISGVDAAGLQASFLSQDEShdhsfgpmstsasgsnlyeaVRMGAGS 761
Cdd:COG3206 244 ALRAQLGSGPDAL-------------PELLQSPVIQQLRAQLAELEAELAELS--------------------ARYTPNH 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 762 SIIENLQSQLKLREGEISH-LQLEISNLEKTRSIMSEELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYNTILQMYGEK 840
Cdd:COG3206 291 PDVIALRAQIAALRAQLQQeAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESL 370
|
250
....*....|
gi 1720417759 841 AEEAEELRLD 850
Cdd:COG3206 371 LQRLEEARLA 380
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
229-468 |
1.85e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 229 VEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDE---FTQRIAEAEKKVQLACKERDaakkE 305
Cdd:PRK01156 199 LENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMknrYESEIKTAESDLSMELEKNN----Y 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 306 MKTIKEELATRLNSSQTA------DLLKEKDeQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKakele 379
Cdd:PRK01156 275 YKELEERHMKIINDPVYKnrnyinDYFKYKN-DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRY----- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 380 EELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYREL--------TDLHKA 451
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEInvklqdisSKVSSL 428
|
250
....*....|....*...
gi 1720417759 452 NAAKDSEVQ-EAALRREM 468
Cdd:PRK01156 429 NQRIRALREnLDELSRNM 446
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
232-556 |
2.11e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 232 LNEKLEKRETQLLSLSKEKALLEEAYDNLKDEmfRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKE 311
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKL--ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 312 ELATRLNS-SQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLD 390
Cdd:pfam02463 266 KLAQVLKEnKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 391 GKEEVEKQHRENIKKLNsvvERQEKDLGRLQVDMDELEEKSRSTQAALdsAYRELTDLHKANAAKDSEVQEAALRREMKA 470
Cdd:pfam02463 346 ELEIKREAEEEEEEELE---KLQEKLEQLEEELLAKKKLESERLSSAA--KLKEEELELKSEEEKEAQLLLELARQLEDL 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 471 KEELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSSTARPLL 550
Cdd:pfam02463 421 LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQ 500
|
....*.
gi 1720417759 551 RQIENL 556
Cdd:pfam02463 501 KESKAR 506
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
245-639 |
2.30e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 245 SLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEELATRLNSsqtad 324
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE----- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 325 lLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLD-------GKEEVEK 397
Cdd:PRK02224 386 -IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecGQPVEGS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 398 QHRENIKKLNSVVERQEKDLGRLQVDMDELEEKsrstqaaldsayreltdLHKANAAKDSEVQEAALRREMKAKEELSGA 477
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEER-----------------LERAEDLVEAEDRIERLEERREDLEELIAE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 478 LEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKE---DYLRHEISELQQRLQEAENRNQELSqsvssTARPLLRQIE 554
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEeeaEEAREEVAELNSKLAELKERIESLE-----RIRTLLAAIA 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 555 NLQATLGS---QTSSWETLEKSLSDRLGESQTLLAA-AVERERAATEELLANKIQMSS----VESQNTLLRQENSRLQAQ 626
Cdd:PRK02224 603 DAEDEIERlreKREALAELNDERRERLAEKRERKRElEAEFDEARIEEAREDKERAEEyleqVEEKLDELREERDDLQAE 682
|
410
....*....|...
gi 1720417759 627 LESEKNKLRKLED 639
Cdd:PRK02224 683 IGAVENELEELEE 695
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
383-692 |
2.34e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 383 QHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKD-LGRLQVDMDELEEKSRSTQAALDSayreltdlhkaNAAKDSEVQE 461
Cdd:pfam17380 273 QLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEeKAREVERRRKLEEAEKARQAEMDR-----------QAAIYAEQER 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 462 AALRREMKAkeELSGALEKAQEEARQQQEALVLQVGDLRlALQRAEQAAARKEDYLRHEI-SELQQRLQEAENRnqelsq 540
Cdd:pfam17380 342 MAMEREREL--ERIRQEERKRELERIRQEEIAMEISRMR-ELERLQMERQQKNERVRQELeAARKVKILEEERQ------ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 541 svsstaRPLLRQIENLQATLGSQTSSwetlekslsdRLGESQTLLAAAVERERAATEELLANKIQMSsvesqnTLLRQEN 620
Cdd:pfam17380 413 ------RKIQQQKVEMEQIRAEQEEA----------RQREVRRLEEERAREMERVRLEEQERQQQVE------RLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 621 SRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLLSSQL--------EMERMKVEQERKKTIFTQE 692
Cdd:pfam17380 471 ERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEerqkaiyeEERRREAEEERRKQQEMEE 550
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
478-680 |
2.34e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 478 LEKAQEEARQQQEALVLQVGDLRLALQRAEQAAAR-KEDY------------------LRHEISELQQRLQEAENRNQEL 538
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEfRQKNglvdlseeaklllqqlseLESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 539 SQSVSSTARPLLRQIEN-LQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLAN-KIQMSSVESQNTLL 616
Cdd:COG3206 246 RAQLGSGPDALPELLQSpVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEaQRILASLEAELEAL 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720417759 617 RQENSRLQAQLESEKNKLRKL---EDENSRYQVELENLKDEYVRTLEesRKEKTLLSSQLEMERMKV 680
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARELYESLLQ--RLEEARLAEALTVGNVRV 390
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
221-688 |
2.37e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 221 EKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEftqrIAEAEKKVQLACKERD 300
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE----IEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 301 AAKKEMKTIKEELATRlnssqtadllkekDEQIQGLMEEGEKLSkqqlhnsniikklrAKDKDNENVIAKLNRKAKELEE 380
Cdd:PRK02224 276 ELAEEVRDLRERLEEL-------------EEERDDLLAEAGLDD--------------ADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 381 ELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKANAAKDSEVQ 460
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 461 EAALRREMKAKE---------ELSGALEKAQEEARQQQEalVLQVGDLRLALQRAEQA--AARKEDYlRHEISELQQRLQ 529
Cdd:PRK02224 409 NAEDFLEELREErdelrereaELEATLRTARERVEEAEA--LLEAGKCPECGQPVEGSphVETIEED-RERVEELEAELE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 530 EAENRNQELSQSVSS--TARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMS 607
Cdd:PRK02224 486 DLEEEVEEVEERLERaeDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 608 SVESQNTLLRQENSRLqAQLESEKNKLRKLEDEnsryQVELENLKDEYVRtLEESRKEKTLLSSQlEMERMKVEQERKKT 687
Cdd:PRK02224 566 EAEEAREEVAELNSKL-AELKERIESLERIRTL----LAAIADAEDEIER-LREKREALAELNDE-RRERLAEKRERKRE 638
|
.
gi 1720417759 688 I 688
Cdd:PRK02224 639 L 639
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
380-580 |
3.24e-03 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 40.01 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 380 EELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDLHKAN------- 452
Cdd:pfam00261 1 KKMQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAAdesergr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 453 ------AAKDSE--------------VQEAALRREMKAKEEL---SGALEKAQEEARQQQEALVLQVGDLRLA------L 503
Cdd:pfam00261 81 kvlenrALKDEEkmeileaqlkeakeIAEEADRKYEEVARKLvvvEGDLERAEERAELAESKIVELEEELKVVgnnlksL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720417759 504 QRAEQAAARKEDYLRHEISELQQRLQEAENRNQELSQSVSstarPLLRQIENLQATLGSQTSSWETLEKSLSDRLGE 580
Cdd:pfam00261 161 EASEEKASEREDKYEEQIRFLTEKLKEAETRAEFAERSVQ----KLEKEVDRLEDELEAEKEKYKAISEELDQTLAE 233
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
289-564 |
4.34e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 289 EKKVQLACKERDAAKKEMKT-IKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKqqlhnsniikKLRAK--DKDNE 365
Cdd:PRK10929 25 EKQITQELEQAKAAKTPAQAeIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSA----------ELRQQlnNERDE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 366 NVIAKLNRKAKELEEE-LQHLRQVLDgkeevekQHREnikklnsvvERQEKDLGRLQVD-MDELEEKSRSTQAALDSAYR 443
Cdd:PRK10929 95 PRSVPPNMSTDALEQEiLQVSSQLLE-------KSRQ---------AQQEQDRAREISDsLSQLPQQQTEARRQLNEIER 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 444 ELTDLHKANAAKdSEVQEAALRREMKAKEELSGALEKAQ--------------EEARQQQEALVLQVGDLRLAL-----Q 504
Cdd:PRK10929 159 RLQTLGTPNTPL-AQAQLTALQAESAALKALVDELELAQlsannrqelarlrsELAKKRSQQLDAYLQALRNQLnsqrqR 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 505 RAEQAAARKEdYLRHEISELQQRLQEAENRNQELSQSVSSTARPlLRQIENLQATLGSQT 564
Cdd:PRK10929 238 EAERALESTE-LLAEQSGDLPKSIVAQFKINRELSQALNQQAQR-MDLIASQQRQAASQT 295
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
207-686 |
5.02e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 207 EQCEAVENQPKAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMfrvkEESSSISSLKDEFTQRIA 286
Cdd:PRK03918 273 KEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKEERLEELKKKLK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 287 EAEKKVQlACKERDAAKKEMKTIKEELaTRLNSsqtadllKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKdkdnen 366
Cdd:PRK03918 349 ELEKRLE-ELEERHELYEEAKAKKEEL-ERLKK-------RLTGLTPEKLEKELEELEKAKEEIEEEISKITAR------ 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 367 vIAKLNRKAKELEEELQHLRQVLDG----KEEVEKQHRENIKklnsvvERQEKDLGRLQVDMDELEEKSRSTQAALDSAY 442
Cdd:PRK03918 414 -IGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKELL------EEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 443 RELTDLHKANAAKDSEVQEAALRREMKA--KEElsgaLEKAQEEARQQQEALVLQVGDLRLALQRAEQAAArkedyLRHE 520
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLKELEEKLKKynLEE----LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-----LKKK 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 521 ISELQQRLQEAENRNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLeKSLSDRLGESQTLLAAAVERERAATEELL 600
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELA 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 601 ANKIQMSSVESQNTLLRQENSrlQAQLESEKNKLRKLEDENSRYQVELENLK---DEYVRTLE------ESRKEKTLLSS 671
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEkrrEEIKKTLEklkeelEEREKAKKELE 714
|
490
....*....|....*
gi 1720417759 672 QLEMERMKVEQERKK 686
Cdd:PRK03918 715 KLEKALERVEELREK 729
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
299-576 |
5.07e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 299 RDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLhnSNIIKKLRAKDKDnenvIAKLNrkaKEL 378
Cdd:PLN02939 81 RTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQL--EDLVGMIQNAEKN----ILLLN---QAR 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 379 EEELQHLRQVLDGKEEVEK----------QHRENIK---KLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALdsaYREL 445
Cdd:PLN02939 152 LQALEDLEKILTEKEALQGkinilemrlsETDARIKlaaQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSL---SKEL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 446 TDLHKANA----------AKDSEVQEAALRREMKAKE---------ELSGALEKAQEEARQ----QQEALVLQVGDLRLA 502
Cdd:PLN02939 229 DVLKEENMllkddiqflkAELIEVAETEERVFKLEKErslldaslrELESKFIVAQEDVSKlsplQYDCWWEKVENLQDL 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 503 LQRA----EQAAA---------RKEDYLRHEISE-------------LQQRLQEAENRNQELSQSVSSTARPLLRQIENL 556
Cdd:PLN02939 309 LDRAtnqvEKAALvldqnqdlrDKVDKLEASLKEanvskfssykvelLQQKLKLLEERLQASDHEIHSYIQLYQESIKEF 388
|
330 340
....*....|....*....|..
gi 1720417759 557 QATLGS--QTSSWETLEKSLSD 576
Cdd:PLN02939 389 QDTLSKlkEESKKRSLEHPADD 410
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
309-390 |
5.23e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 40.05 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 309 IKEELATRlNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAK---LNRKAKELEEELQHL 385
Cdd:PRK05431 14 VKEALAKR-GFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEvkeLKEEIKALEAELDEL 92
|
....*
gi 1720417759 386 RQVLD 390
Cdd:PRK05431 93 EAELE 97
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
365-534 |
5.31e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 365 ENVIAKLnrKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAALDSayre 444
Cdd:COG2433 379 EEALEEL--IEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSE---- 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 445 ltdlhkanaAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEAL---VLQVGDLRLALQRAEQAAARK-EDYLRHE 520
Cdd:COG2433 453 ---------ARSEERREIRKDREISRLDREIERLERELEEERERIEELkrkLERLKELWKLEHSGELVPVKVvEKFTKEA 523
|
170
....*....|....
gi 1720417759 521 ISELQQRLQEAENR 534
Cdd:COG2433 524 IRRLEEEYGLKEGD 537
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
359-669 |
5.63e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 5.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 359 AKDKDNENVIAKLNRKAKELEEELQHLRqvldgkeEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDE-LEEKSRSTQAA 437
Cdd:COG3096 829 AFAPDPEAELAALRQRRSELERELAQHR-------AQEQQLRQQLDQLKEQLQLLNKLLPQANLLADEtLADRLEELREE 901
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 438 LDSAY--RELTDLHKANAAKdSEVQEAALRREMKAKEELSGALEKA---QEEARQQQEALVlQVGDLRLALQRAEQAAAR 512
Cdd:COG3096 902 LDAAQeaQAFIQQHGKALAQ-LEPLVAVLQSDPEQFEQLQADYLQAkeqQRRLKQQIFALS-EVVQRRPHFSYEDAVGLL 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 513 KEDylrHEISE-LQQRLQEAEnrnQELSQsvsstARPLLRQIenlQATLGSQTSSWETLEKSLSDRLGESQTLLaaaver 591
Cdd:COG3096 980 GEN---SDLNEkLRARLEQAE---EARRE-----AREQLRQA---QAQYSQYNQVLASLKSSRDAKQQTLQELE------ 1039
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720417759 592 eraatEELLANKIQMSSVESQNTllRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRTLEESRKEKTLL 669
Cdd:COG3096 1040 -----QELEELGVQADAEAEERA--RIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
234-362 |
5.72e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 234 EKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEEsssissLKDEFTQRIAEAEKKVQlacKERDAAKKEMKTIKEEL 313
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK------LQEEEDKLLEEAEKEAQ---QAIKEAKKEADEIIKEL 593
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1720417759 314 ATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDK 362
Cdd:PRK00409 594 RQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDE 642
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
205-547 |
5.97e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 205 ATEQCEAVENQPKAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAY--DNLKDEMFRVKEESSSISSLKDEFT 282
Cdd:PTZ00121 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEV 1597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 283 QRIAEAEKKVQ-----------LACKERDAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNS 351
Cdd:PTZ00121 1598 MKLYEEEKKMKaeeakkaeeakIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 352 NIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKS 431
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 432 RSTQAALDSAYRELTDLHKANAAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEAlVLQVGDLRLALQRAEQAAA 511
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG-NLVINDSKEMEDSAIKEVA 1836
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720417759 512 RKEDYLRHEISELQQRLQEAENRNQELSQSVSSTAR 547
Cdd:PTZ00121 1837 DSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNK 1872
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-658 |
6.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 228 TVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEF-TQRIAEAEKKVQLACKERDAAKKEM 306
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 307 KTIKEELAT-RLNSSQTADLLKEKDEQIQGLMEEGEKLSKQqlhnsniikkLRAKDKDNENVIAKLNRKAKELEEELQHL 385
Cdd:COG4913 362 ARLEALLAAlGLPLPASAEEFAALRAEAAALLEALEEELEA----------LEEALAEAEAALRDLRRELRELEAEIASL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 386 R-----------------------------------QVLDGKEE-----------------VEKQHrenIKKLNSVVERq 413
Cdd:COG4913 432 ErrksniparllalrdalaealgldeaelpfvgeliEVRPEEERwrgaiervlggfaltllVPPEH---YAAALRWVNR- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 414 EKDLGRLQVD-MDELEEKSRSTQAALDSAYRELT------------------DLHKANAAK------------------- 455
Cdd:COG4913 508 LHLRGRLVYErVRTGLPDPERPRLDPDSLAGKLDfkphpfrawleaelgrrfDYVCVDSPEelrrhpraitragqvkgng 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 456 -------------------DSEVQEAALRREMKAKEELSGALEKAQEEARQQQEALVlqvgDLRLALQRAEQAAARKED- 515
Cdd:COG4913 588 trhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ----ERREALQRLAEYSWDEIDv 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 516 -YLRHEISELQQRLQEAENRNQELSQsvsstarpLLRQIENLQATLGSQTSSWETLE----------KSLSDRLGESQTL 584
Cdd:COG4913 664 aSAEREIAELEAELERLDASSDDLAA--------LEEQLEELEAELEELEEELDELKgeigrlekelEQAEEELDELQDR 735
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720417759 585 LAAAVERERAATEELLANKIqmssvesQNTLLRQENSRLQAQLESEknkLRKLEDENSRYQVELENLKDEYVRT 658
Cdd:COG4913 736 LEAAEDLARLELRALLEERF-------AAALGDAVERELRENLEER---IDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
237-445 |
6.48e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.45 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 237 EKRETQLLSLSKEKALLEEAY--DNLKDEMFRVKEESSSISSLKDEFTQRIAEA-EKKVQLACKERdaAKKEMKTIKEEL 313
Cdd:COG5022 855 LKAKKRFSLLKKETIYLQSAQrvELAERQLQELKIDVKSISSLKLVNLELESEIiELKKSLSSDLI--ENLEFKTELIAR 932
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 314 ATRLNSSQTADLLKEKD----EQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLRQVL 389
Cdd:COG5022 933 LKKLLNNIDLEEGPSIEyvklPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQ 1012
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720417759 390 DGKEEVEKQHREN--IKKLNSVVERQEKDLGRLQvDMDELEEKSRSTQAALDSAYREL 445
Cdd:COG5022 1013 ESTKQLKELPVEVaeLQSASKIISSESTELSILK-PLQKLKGLLLLENNQLQARYKAL 1069
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
370-658 |
6.87e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 370 KLNR-KAKELEEELQHLRQVLDGKEEVEKQHRENIKKLNSVverQEKDLGRLQVDMDELEEKSRSTQAALDSAYRELTDL 448
Cdd:PHA02562 170 KLNKdKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK---NGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 449 hkanaAKDSEVQEAALRREMKAKEELSGALEKAQEEARQQQEAlvlqvGDLRLALQRAEQAAARKEDyLRHEISELQQRL 528
Cdd:PHA02562 247 -----VMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKG-----GVCPTCTQQISEGPDRITK-IKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 529 QEAENRNQELSQSVSstarpllrQIENLQATLGSQTSSWETLEKSLSdrlgesqtllaaavererAATEELLANKIQMSS 608
Cdd:PHA02562 316 EKLDTAIDELEEIMD--------EFNEQSKKLLELKNKISTNKQSLI------------------TLVDKAKKVKAAIEE 369
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1720417759 609 VESQNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELENLKDEYVRT 658
Cdd:PHA02562 370 LQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKA 419
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
217-346 |
7.02e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 217 KAPPEKEDVCKTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLK---------DEFTQRIAE 287
Cdd:COG1579 28 ELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKeyealqkeiESLKRRISD 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720417759 288 AEKKVQLACKERDAAKKEMKTIKEELATRlnSSQTADLLKEKDEQIQGLMEEGEKLSKQ 346
Cdd:COG1579 108 LEDEILELMERIEELEEELAELEAELAEL--EAELEEKKAELDEELAELEAELEELEAE 164
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
266-579 |
8.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 266 RVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEMKTIKeelatrlnsSQTADLLKEKDEQ----------IQG 335
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK---------SQLADYQQALDVQqtraiqyqqaVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 336 LMEEGEKLSKQQLHNSNIikklrakdkdnENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHR---ENIKKLNSVVER 412
Cdd:COG3096 422 LEKARALCGLPDLTPENA-----------EDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEkayELVCKIAGEVER 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 413 ----------------QEKDLGRLQV---DMDELEEKSRSTQaaldSAYRELTDLHKA-----NAAKDSEVQEAALRREm 468
Cdd:COG3096 491 sqawqtarellrryrsQQALAQRLQQlraQLAELEQRLRQQQ----NAERLLEEFCQRigqqlDAAEELEELLAELEAQ- 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 469 kaKEELSGALEKAQEEA---RQQQEALVLQVGDLR------LALQRA-----EQAAARKEDylRHEISELQQRLQEAENR 534
Cdd:COG3096 566 --LEELEEQAAEAVEQRselRQQLEQLRARIKELAarapawLAAQDAlerlrEQSGEALAD--SQEVTAAMQQLLERERE 641
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1720417759 535 NQELSQSVSSTARPLLRQIENLQATLGSQTSSWetleKSLSDRLG 579
Cdd:COG3096 642 ATVERDELAARKQALESQIERLSQPGGAEDPRL----LALAERLG 682
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
227-869 |
9.16e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.95 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 227 KTVEFLNEKLEKRETQLLSLSKEKALLEEAYDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEM 306
Cdd:pfam02463 265 EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 307 KTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRAKDKDNENVIAKLNRKAKELEEELQHLR 386
Cdd:pfam02463 345 KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 387 QVLDGKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEK-------------SRSTQAALDSAYRELTDLHKANA 453
Cdd:pfam02463 425 KKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKksedllketqlvkLQEQLELLLSRQKLEERSQKESK 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 454 AKDSEVQEAALRREMKAKE--ELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQRLQEA 531
Cdd:pfam02463 505 ARSGLKVLLALIKDGVGGRiiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLI 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 532 ENRNQELSQSVSSTARPLLRQIENLQATLGSQTSSWETLEKSLSDRLGESQTLLAAAVERERAATEELLANKIQMSSVES 611
Cdd:pfam02463 585 PKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEV 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 612 QNTLLRQENSRLQAQLESEKNKLRKLEDENSRYQVELEnlkdeyvrtLEESRKEKTLLSSQLEMERMK-VEQERKKTIFT 690
Cdd:pfam02463 665 KASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK---------KKEQREKEELKKLKLEAEELLaDRVQEAQDKIN 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 691 QEALKEKDHKLFSVCSTPTMSRSSSISGVDAAGLQASFLSQDESHDHSFGPMSTSASGSNLYEAVRMGAGSSIIENLQSQ 770
Cdd:pfam02463 736 EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAE 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 771 LKLREGEISHLQLEISNLEKTR-SIMSEELVKLTNQNDELEEKVKEIPKLRVQLRDLDQRYNTILQMYGEKAEEAEELRL 849
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEElALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 895
|
650 660
....*....|....*....|
gi 1720417759 850 DLEDVKNMYKTQIDELLRQR 869
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEK 915
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
279-579 |
9.18e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 279 DEFTQRIAEAEKKVQLACKERDAAKKEMKTIKEE---LATRLNSSQTA-DLLKEKDEQIQGlmeegeklSKQQLHNSNII 354
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEvdeLKSQLADYQQAlDVQQTRAIQYQQ--------AVQALERAKQL 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 355 KKLRAKDKDN-ENVIAKLNRKAKELEEELQHLRQVLDGKEEVEKQHR---ENIKKLNSVVERQE---------------- 414
Cdd:PRK04863 430 CGLPDLTADNaEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEqayQLVRKIAGEVSRSEawdvarellrrlreqr 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 415 ---KDLGRLQVDMDELEEKSRStQAALDSAYRELTDLHKANAAKDSEVQEAALRREMkAKEELSGALEKAQE---EARQQ 488
Cdd:PRK04863 510 hlaEQLQQLRMRLSELEQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEA-RLESLSESVSEARErrmALRQQ 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 489 QEALVLQVGDLR------LALQRA-----EQAAARKEDylRHEISELQQRLQEAENRNQELSQSVSSTARPLLRQIENLQ 557
Cdd:PRK04863 588 LEQLQARIQRLAarapawLAAQDAlarlrEQSGEEFED--SQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
330 340
....*....|....*....|..
gi 1720417759 558 ATLGsqtSSWETLeKSLSDRLG 579
Cdd:PRK04863 666 QPGG---SEDPRL-NALAERFG 683
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
448-631 |
9.66e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 448 LHKANAAKDSEVQEAalRREMKAKEELsgALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQQR 527
Cdd:PRK12704 33 IKEAEEEAKRILEEA--KKEAEAIKKE--ALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 528 LQEAENRNQELSQsvsstarpLLRQIENLQATLgsqtsswETLEKSLSDRLGESQTLlaaavereraATEEllANKIQMS 607
Cdd:PRK12704 109 EEELEKKEKELEQ--------KQQELEKKEEEL-------EELIEEQLQELERISGL----------TAEE--AKEILLE 161
|
170 180 190
....*....|....*....|....*....|
gi 1720417759 608 SVESQntlLRQENSRL------QAQLESEK 631
Cdd:PRK12704 162 KVEEE---ARHEAAVLikeieeEAKEEADK 188
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
316-438 |
9.89e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720417759 316 RLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQlhnsniikklrakDKDNENVIAKLNRKAKELEEELQHLRQvldgKEEV 395
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQLEIEKEALKKEQ-------------DEASFERLAELRDELAELEEELEALKA----RWEA 465
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1720417759 396 EKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKSRSTQAAL 438
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLL 508
|
|
| |
