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Conserved domains on  [gi|1868518124|ref|XP_035325761|]
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uncharacterized protein HER10_EVM0012595 [Colletotrichum scovillei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNA_pol_phi super family cl47903
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 194-280 9.65e-06

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


The actual alignment was detected with superfamily member pfam04931:

Pssm-ID: 461488  Cd Length: 765  Bit Score: 46.85  E-value: 9.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868518124 194 SADAAELLLDTLSDDELEAGGHSMCDVDEDLFDGEGDESYRSDMSDAESGEDSDLSEGGELDDDYGDSDVSDE------- 266
Cdd:pfam04931 612 TEEGLELLLDVLDARENPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIdelrakl 691

                          90
                  ....*....|....*....
gi 1868518124 267 -----SYGPGAEEDDSDIE 280
Cdd:pfam04931 692 aealgEHGDDADDDDSDSD 710
 
Name Accession Description Interval E-value
DNA_pol_phi pfam04931
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 194-280 9.65e-06

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


Pssm-ID: 461488  Cd Length: 765  Bit Score: 46.85  E-value: 9.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868518124 194 SADAAELLLDTLSDDELEAGGHSMCDVDEDLFDGEGDESYRSDMSDAESGEDSDLSEGGELDDDYGDSDVSDE------- 266
Cdd:pfam04931 612 TEEGLELLLDVLDARENPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIdelrakl 691

                          90
                  ....*....|....*....
gi 1868518124 267 -----SYGPGAEEDDSDIE 280
Cdd:pfam04931 692 aealgEHGDDADDDDSDSD 710
 
Name Accession Description Interval E-value
DNA_pol_phi pfam04931
DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7. ...
 194-280 9.65e-06

DNA polymerase phi; This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.


Pssm-ID: 461488  Cd Length: 765  Bit Score: 46.85  E-value: 9.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1868518124 194 SADAAELLLDTLSDDELEAGGHSMCDVDEDLFDGEGDESYRSDMSDAESGEDSDLSEGGELDDDYGDSDVSDE------- 266
Cdd:pfam04931 612 TEEGLELLLDVLDARENPEGQQELFEDEDEDEEDDDEEEDDDDEDDEDSEEDDDEDDDDEDEEDDDDEDVDEIdelrakl 691

                          90
                  ....*....|....*....
gi 1868518124 267 -----SYGPGAEEDDSDIE 280
Cdd:pfam04931 692 aealgEHGDDADDDDSDSD 710
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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