|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
3.40e-26 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 108.72 E-value: 3.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 89 KKLTKQDNLALVKSL-------NlslskdggkKFRYIENLEKCVKLEVLNLSYNLIVKIEKVDKLLRLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 162 IEGLENMCN------------------------------LQKLNLAGNEIEHIpvWFAKKLKSLRVLNLKGNKISSLQDV 211
Cdd:cd21340 83 VEGLENLTNleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 212 SK-LKPLQDLTSLVLIDNPVVALPHYLQFIIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 161 LDlLSSWPSLRELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1407-2083 |
5.70e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 114.00 E-value: 5.70e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1407 ELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKR 1486
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1487 AQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvaakdadfqcLNEKKEKLTEELQSLQRDIKAAQhsedh 1566
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAE--------------LEEKLEELKEELESLEAELEELE----- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1567 hlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALT-LGETEVAEKCSHI 1645
Cdd:TIGR02168 365 --AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1646 REVKSLLEELSFQKGELNvhisekkTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQK 1725
Cdd:TIGR02168 443 EELEEELEELQEELERLE-------EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1726 VV----------------ELEKAqVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLS 1789
Cdd:TIGR02168 516 SGlsgilgvlselisvdeGYEAA-IEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1790 KEKEDLQGQCESWEKKSSHAQRVLA--------------ATEESNKMEQSNL-------------------GKLELSVRK 1836
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1837 LRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEEL--------DSTQDHLDLAKQDLIHTTKCQN------ELLN 1902
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELeqlrkeleELSRQISALRKDLARLEAEVEQleeriaQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1903 EQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQL- 1981
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIa 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1982 --EKELTDQKSRLKQLLTDVSAAEGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMR 2055
Cdd:TIGR02168 835 atERRLEDLEEQIEELSEDIESLAAEIEELEELieelESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
730 740 750
....*....|....*....|....*....|.
gi 1907139925 2056 ADFSLLR---NQFLTERKKAEKQVAGLKEAL 2083
Cdd:TIGR02168 915 RELEELReklAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1330-2084 |
4.77e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 104.37 E-value: 4.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1330 RLEDIMQHLKSKQREERRQ--KA------STQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHV 1401
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQaeKAerykelKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1402 ENLMTEL-----EIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQT 1476
Cdd:TIGR02168 270 EELRLEVseleeEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1477 ESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRD 1556
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1557 IKAAQHSEDHhlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGET 1636
Cdd:TIGR02168 430 LEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1637 EVAEKCSHIR---EVKSLLEELSFQKG-----------ELNVHISEKKTQLALIQQEMEKEEKNLQVVLqQLSRHKTELK 1702
Cdd:TIGR02168 508 VKALLKNQSGlsgILGVLSELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFL-PLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1703 NVADILQLETSE-LQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQR-------------------- 1761
Cdd:TIGR02168 587 QGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsa 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1762 ----QLLERdRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKL 1837
Cdd:TIGR02168 667 ktnsSILER-RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1838 RQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMAR 1917
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1918 LESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEA---GKVTLEQQQRQLEKELTDQKSRLKQ 1994
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1995 LLTDVSAAEGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQQLMaksGELLALQKEADDmradfsllrnqfltERK 2070
Cdd:TIGR02168 906 LESKRSELRRELEELREKlaqlELRLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIED--------------DEE 968
|
810
....*....|....
gi 1907139925 2071 KAEKQVAGLKEALK 2084
Cdd:TIGR02168 969 EARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-1097 |
3.76e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.09 E-value: 3.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 441 EDTEKKISAAQ---TRLSELHHEIET-----AEQKvlRATQEFKQLEEAIQQKKISeaekdLLLKQLSGRLQHLNRLRQE 512
Cdd:COG1196 175 EEAERKLEATEenlERLEDILGELERqleplERQA--EKAERYRELKEELKELEAE-----LLLLKLRELEAELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 513 ALDLEIQMEKQRKEIAEKHEEINTVQLATDSLdpkdpkhshmkaqkrgkEQQLDIMNRQYTQLESRLDEILCRIAKETEE 592
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEEL-----------------ELELEEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 593 IKDLEQQLTDgqiaanealkkdlegvisglqeylgtikgQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAE 672
Cdd:COG1196 311 RRELEERLEE-----------------------------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 673 NMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESL 752
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 753 RDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEmrihs 832
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL----------AEAAARLLLLLEAEADYEGF----- 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 833 PSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKF-----DKRQH 906
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVlIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkIRARA 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 907 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAA 986
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 987 SDKLAAAELTIAKDQLKSLhgtvVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENAD 1066
Cdd:COG1196 667 RRELLAALLEAEAELEELA----ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
650 660 670
....*....|....*....|....*....|.
gi 1907139925 1067 LGAKGANSQLLEIEALNEAMAKQRAEITRLR 1097
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1408-1948 |
5.06e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.70 E-value: 5.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1408 LEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRA 1487
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1488 QETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHH 1567
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1568 LQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIRE 1647
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1648 VKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEE--KNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQK 1725
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1726 VVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK 1805
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1806 SSHAQRVLAAT-----EESNKMEQSNLGKlELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQ 1880
Cdd:COG1196 632 LEAALRRAVTLagrlrEVTLEGEGGSAGG-SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 1881 DHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQ 1948
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
439-1121 |
5.87e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.82 E-value: 5.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALDLEI 518
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 519 QMEKQRKEIAEKHEEINtvqlatDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQ 598
Cdd:TIGR02168 341 ELEEKLEELKEELESLE------AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 599 QLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKEL 678
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 679 AELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKdaetSQLKQELEKLLRRTQleQSVLQTELEKER---ESLRDA 755
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD----EGYEAAIEAALGGRL--QAVVVENLNAAKkaiAFLKQN 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 756 -LGKAQSSEEKQ---QENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIH 831
Cdd:TIGR02168 569 eLGRVTFLPLDSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 832 SPSDVL---------GKSLADLQKQFSEI-LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKF 901
Cdd:TIGR02168 649 TLDGDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 902 -----DKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKkredARSQEQFLGLDEE 976
Cdd:TIGR02168 729 salrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI----EQLKEELKALREA 804
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 977 LKSLKKAVAA-SDKLAAAELTIA--KDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLRE 1053
Cdd:TIGR02168 805 LDELRAELTLlNEEAANLRERLEslERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1054 REGQF---RDEMENADLGAKGANSQLLEIEALNEAMAKQRAEItrlrdvlNLTGAGTKGGIENVLEEIAEL 1121
Cdd:TIGR02168 885 LEEALallRSELEELSEELRELESKRSELRRELEELREKLAQL-------ELRLEGLEVRIDNLQERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1498-2084 |
7.80e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.93 E-value: 7.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1498 EQQLRLLQADAEDLEQHK-IKQEEILKEINKVVAAKDAdfqcLNEKKEKLTEELQSLQRDIKAAQHSedhhlqvLRESET 1576
Cdd:COG1196 199 ERQLEPLERQAEKAERYReLKEELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAE-------LAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1577 LLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEAltlgETEVAEKCSHIREVKSLLEELS 1656
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL----EEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1657 FQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDV 1736
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1737 LEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQScvECLSKEKEDLQGQCESWEKKSSHAQRVLAAT 1816
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1817 EESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAE---------VQQQLQGKQEAINSLQEELDS--TQDHLDL 1885
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaaalqniVVEDDEVAAAAIEYLKAAKAGraTFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1886 AKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQ 1965
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1966 KFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLgtlQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELL 2045
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE---EEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590
....*....|....*....|....*....|....*....
gi 1907139925 2046 ALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALK 2084
Cdd:COG1196 739 EELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
437-1047 |
2.49e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 437 DLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALDL 516
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEIAEKHEEINTvqlatdsldpkdpkhshmkaqkrgkeqqldimnrqytqlesrldeilcRIAKETEEIKDL 596
Cdd:COG1196 318 LEELEEELAELEEELEELEE------------------------------------------------ELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 597 EQQLTDGQIAANEALKKDLEgvisglqeylgtikgQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRK 676
Cdd:COG1196 350 EEELEEAEAELAEAEEALLE---------------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 677 ELAELESALQEQhevnaslqqaqgdLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDAL 756
Cdd:COG1196 415 RLERLEEELEEL-------------EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 757 GKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRkrlkLGAGEMRIHSPSDV 836
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA----LAAALQNIVVEDDE 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 837 LGKSLADLQKQ-------FSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEA-RIKFDKRQHNA 908
Cdd:COG1196 558 VAAAAIEYLKAakagratFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtLVAARLEAALR 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 909 RIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASD 988
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 989 KLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAM---QAAKDLSRAEAEIELL 1047
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPdleELERELERLEREIEAL 779
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-250 |
3.46e-19 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 92.69 E-value: 3.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 96 NLALVKSLNLSlskdgGKKFRYI-ENLEKCVKLEVLNLSYNLIVKI-EKVDKLLRLRELNLSYNKISKI-EGLENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 173 KLNLAGNEIEHIPVWFAkKLKSLRVLNLKGNKISSLQDVSKLKplqDLTSLVLIDNPVVALPHYLQfiifhLRSLESL 250
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLT---NLEELDLSNNQLTDLPPLAN-----LTNLKTL 277
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1754-2091 |
1.27e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1754 RRELERQRQLLERDRRETERVRAesqalqscvecLSKEKEDLQGQCESWEKKSSHAQrvlaateesnkmeqsnLGKLELS 1833
Cdd:COG1196 195 LGELERQLEPLERQAEKAERYRE-----------LKEELKELEAELLLLKLRELEAE----------------LEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1834 VRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISK 1913
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1914 WMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLK 1993
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1994 QLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQfLTERKKAE 2073
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA-LAELLEEL 486
|
330
....*....|....*...
gi 1907139925 2074 KQVAGLKEALKIQRSQLE 2091
Cdd:COG1196 487 AEAAARLLLLLEAEADYE 504
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
5.40e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 88.84 E-value: 5.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 55 QAELTDESTVPLEPQQRKGAESYVGVRYITEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRYIENLEKCVKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 135 NLIVKI-EKVDKLLRLRELNLSYNKISKI-EGLENMCNLQKLNLAGNEIEHIPVWFAkKLKSLRVLNLKGNKISSLQDVs 212
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEP- 200
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907139925 213 kLKPLQDLTSLVLIDNPVVALPHYLQfiifHLRSLESL 250
Cdd:COG4886 201 -LGNLTNLEELDLSGNQLTDLPEPLA----NLTNLETL 233
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1638-2005 |
7.40e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 87.43 E-value: 7.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1638 VAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvLQQLSRHKTELKNVADILQLETSELQG 1717
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-----YQALLKEKREYEGYELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1718 LKLQHDQKVVELEKAQVDVLEeklelenlqqatQQQRRELERQRQLLERdrrETERVRAESQALQSCVEclsKEKEDLQG 1797
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEI------------SELEKRLEEIEQLLEE---LNKKIKDLGEEEQLRVK---EKIGELEA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1798 QCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELD 1877
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1878 STQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQ 1957
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1907139925 1958 KEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGR 2005
Cdd:TIGR02169 462 ADLSKYEQELYD----LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1320-1986 |
1.19e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1320 EHHNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDglhrdiddllQEKKELELEVEELHRTIERHQQRKDFIDG 1399
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE----------RQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1400 HVENLMTELEIEKSLkhHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESD 1479
Cdd:TIGR02168 345 KLEELKEELESLEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1480 AEALEKRAQETALNLVKA-----EQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKK---EKLTEELQ 1551
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslERLQENLE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1552 SLQRDIKA---AQHSEDHHLQVLRES-----------ETLL------------QAKRAELETLKSQ----------VTSQ 1595
Cdd:TIGR02168 503 GFSEGVKAllkNQSGLSGILGVLSELisvdegyeaaiEAALggrlqavvvenlNAAKKAIAFLKQNelgrvtflplDSIK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1596 QQELAVLDSELGHRREELLLLQDSLAQAKADLQEALT--LGETEVAEKC-SHIREVKSLLEELSF--QKGELnVHI---- 1666
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSylLGGVLVVDDLdNALELAKKLRPGYRIvtLDGDL-VRPggvi 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1667 ---SEKKTQLAL-IQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLE 1742
Cdd:TIGR02168 662 tggSAKTNSSILeRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1743 LENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEES--- 1819
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaan 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1820 ----NKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTK 1895
Cdd:TIGR02168 822 lrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1896 CQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIREsKLRLDQQEMMfqKLQKEREREEQKfeagkvtLE 1975
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAE--ALENKIEDDEEE-------AR 971
|
730
....*....|.
gi 1907139925 1976 QQQRQLEKELT 1986
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1409-2090 |
2.91e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.50 E-value: 2.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1409 EIEKSLKHHEDI---VDEIECLEKTLLKRRSELREaDRLLAEAENELACTKEKTKsavekFTDAKRNLLQTESDAEALEK 1485
Cdd:TIGR02169 171 KKEKALEELEEVeenIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYE-----GYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1486 RAQEtalnlvkAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQC-LNEKKEKLTEELQSLQRDIKAAQHSE 1564
Cdd:TIGR02169 245 QLAS-------LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1565 DHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALtlgetevaekcsh 1644
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR------------- 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1645 iREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEkNLQVVLQQLSRHKTELKNVADILQLETSELQGlKLQHDQ 1724
Cdd:TIGR02169 385 -DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQEW-KLEQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1725 KVVELEKAQV-DVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERV----RAESQALQSCVECLSKEKEDLQGQC 1799
Cdd:TIGR02169 462 ADLSKYEQELyDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVeevlKASIQGVHGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1800 ESweKKSSHAQRVLAATEESNK-----MEQSNLGKLE-LSVRKLRQELEQLS---------------------------- 1845
Cdd:TIGR02169 542 EV--AAGNRLNNVVVEDDAVAKeaielLKRRKAGRATfLPLNKMRDERRDLSilsedgvigfavdlvefdpkyepafkyv 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1846 -----------------------------------------------QDKLALHSEVAEVQQQLQGKQEAINSLQEELDS 1878
Cdd:TIGR02169 620 fgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1879 TQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQK 1958
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1959 EREREEQKFEAGKV-TLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE------------------ERRIEGL 2019
Cdd:TIGR02169 780 ALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiqelqeqridlkeqiksiEKEIENL 859
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 2020 ERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLR---NQFLTERKKAEKQVAGLKEALKIQRSQL 2090
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1322-1878 |
3.09e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 3.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1322 HNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDfidgHV 1401
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA----RL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1402 ENLMTELEIEKslkhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAE 1481
Cdd:COG1196 308 EERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1482 ALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ 1561
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSEL-GHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1641 KCS--HIREVKSLLEELSFQKGELNVHISEKKTQLALIQQ---EMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSEL 1715
Cdd:COG1196 543 ALAaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIrarAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1716 QGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQscvECLSKEKEDL 1795
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA---EEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1796 QGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQlqgkQEAINSLQEE 1875
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLERE 775
|
...
gi 1907139925 1876 LDS 1878
Cdd:COG1196 776 IEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
258-986 |
8.13e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 8.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 258 QDRQEAFERFSlEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAmlqkqscEELESDLSTKKELLKQ 337
Cdd:TIGR02168 284 EELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL-------AELEEKLEELKEELES 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 338 KTVELTRACQKQYELEQelafyKIDAKFEPLNYYPSEYAEIdkypdespyigksryKRNMfatetyivsDAQAVQIRKMV 417
Cdd:TIGR02168 356 LEAELEELEAELEELES-----RLEELEEQLETLRSKVAQL---------------ELQI---------ASLNNEIERLE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 418 PEGGQLRHEHTpPRVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLK 497
Cdd:TIGR02168 407 ARLERLEDRRE-RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 498 QLSGRLQHLNRLRQEALDL---EIQMEKQRKEIAEKH------------------------------EEINTVQLATDSL 544
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFsegVKALLKNQSGLSGILgvlselisvdegyeaaieaalggrlqavvvENLNAAKKAIAFL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 545 DPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQL-------TDGQIAANEALKKDLEG 617
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 618 VISGLQEYLGTIKGQATQAQNEcrklqdEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEqhevnasLQQ 697
Cdd:TIGR02168 646 RIVTLDGDLVRPGGVITGGSAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 698 AQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQlEQSVLQTELEKERESLRDALGKAQSS-EEKQQENNELRTQL 776
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEElAEAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 777 KQLQDDNSLLKKQLKEFQNHLNhvvdglihpeevAARVDELRKRLKLGAGEMRIHSpsdvLGKSLADLQKQF---SEILA 853
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELT------------LLNEEAANLRERLESLERRIAA----TERRLEDLEEQIeelSEDIE 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 854 RSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQAceraleariKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGL 933
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEEALALL---------RSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 934 TDLQLQEADEEKERILAQLQELEKKKKREDARSQE----QFLGLDEELKSLKKAVAA 986
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1835-2096 |
5.50e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 5.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1835 RKLRQELEQLSQDKLALH-----SEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQE 1909
Cdd:COG1196 216 RELKEELKELEAELLLLKlreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1910 DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQK 1989
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1990 SRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTER 2069
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260
....*....|....*....|....*..
gi 1907139925 2070 KKAEKQVAGLKEALKIQRSQLEKNLLL 2096
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAEL 482
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1406-2054 |
1.80e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.73 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1406 TELEIEKSLKHHEDIVDEIECLEKTLLKRRSELRE-ADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALE 1484
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1485 KRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSE 1564
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1565 DHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADL---QEALTLGETEVAEK 1641
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLskyEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1642 CSHIREVKSLLEELSFQKGELNVHISEKKTQ-----------LALIQQEMEKEEK-------------NLQVV------- 1690
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVeevlkasiqgvHGTVAQLGSVGERyataievaagnrlNNVVVeddavak 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1691 --LQQLSRHKTELKNVADILQLETSELQGLKLQHDQKV------VELEKAQVDVLEEKLELENLQQATQQQRRELERQR- 1761
Cdd:TIGR02169 562 eaIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIgfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRm 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1762 -----QLLE---------RDRRETERV----RAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1823
Cdd:TIGR02169 642 vtlegELFEksgamtggsRAPRGGILFsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1824 QSNLGKLELSVRKLRQELEQ-------LSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDlihttkc 1896
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEEleedlssLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------- 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1897 qnELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESklrldQQEMMFQKLQK-EREREEQKFEAGKVTLE 1975
Cdd:TIGR02169 795 --EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL-----QEQRIDLKEQIkSIEKEIENLNGKKEELE 867
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1976 QQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQeeeRRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDM 2054
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELE---RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
152-279 |
5.57e-14 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 72.10 E-value: 5.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 152 LNLSYNKISKIEGLENMCNLQKLNLAGNEIEHIPVWFAKKLKSLRVLNLKGNKISSLQDVSKLKPLQDLTSLVLIDNPVV 231
Cdd:pfam14580 47 IDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT 126
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907139925 232 ALPHYLQFIIFHLRSLESLEGQPVTTQDRQEAFERFSLEEIERLEKDL 279
Cdd:pfam14580 127 NKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-1132 |
2.29e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 2.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 438 LQLEDTEKKISAAQTRLSELHHEIETAE--QKVLRATQEFKQLEEAiQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALD 515
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYELL-KEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 516 LEIQMEKQRKEIAEKHEEINtvQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKD 595
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIK--DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 596 LEQQLTDGQIaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELEliamdaENMR 675
Cdd:TIGR02169 341 LEREIEEERK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK------RELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 676 KELAELESALQEQHEVNASLQQAQGDLSAYETELET-QLKLKDAET--SQLKQELEKL---LRRTQLEQSVLQTELEKER 749
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDkALEIKKQEWklEQLAADLSKYeqeLYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 750 ESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQ------------NHLNHVVdglIHPEEVAARVDEL 817
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagNRLNNVV---VEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 818 RKRLKLGA------GEMR-IHSPSDVLGKS--------LADLQKQF---------SEILARSQWEKEE--AQVRERKLHE 871
Cdd:TIGR02169 567 LKRRKAGRatflplNKMRdERRDLSILSEDgvigfavdLVEFDPKYepafkyvfgDTLVVEDIEAARRlmGKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 872 EMALQQEKLANGQEEFRQACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQ 951
Cdd:TIGR02169 647 ELFEKSGAMTGGSRAPRGGILFSRSEPAEL--QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 952 LQELEkkkkREDARSQEQFLGLDEELKSLKKAVAASD--------KLAAAELTIAKDQLK------SLHGTVVRINQERA 1017
Cdd:TIGR02169 725 IEQLE----QEEEKLKERLEELEEDLSSLEQEIENVKselkeleaRIEELEEDLHKLEEAlndleaRLSHSRIPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1018 EELQEAERFSREAMQAA-KDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRL 1096
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIeQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
730 740 750
....*....|....*....|....*....|....*.
gi 1907139925 1097 RDVLnltgAGTKGGIENVLEEIAELRHAVSAQNEYI 1132
Cdd:TIGR02169 881 ESRL----GDLKKERDELEAQLRELERKIEELEAQI 912
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
809-1102 |
2.53e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 2.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 809 EVAARVDELRKRLKLGAGEMRIHSpsdvlgksLADLQKQFSEILArsqwEKEEAQVRERKLHEEMALQQEKLANGQEEFR 888
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLK--------LRELEAELEELEA----ELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 889 QACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQE 968
Cdd:COG1196 278 ELELELEEAQAEE--YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 969 QFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQ 1048
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1049 HLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNL 1102
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1768-2092 |
2.86e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 2.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1768 RRETERVRAESQALQSCVECLSKEkedLQGQCESWEKKSSHAQRVLAATEEsnkMEQSNLGKLELSVRKLRQELEQLSQD 1847
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNE---LERQLKSLERQAEKAERYKELKAE---LRELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1848 KLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihttkcqNELLNEQTQLQEDISKWMARLESCQKETET 1927
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-------YALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1928 KEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVT---LEQQQRQLEKELTDQKSRLKQLLTDVSAAEG 2004
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEleeLESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 2005 RLGTLqeeERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTER-KKAEKQVAGLKEAL 2083
Cdd:TIGR02168 401 EIERL---EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAlEELREELEEAEQAL 477
|
....*....
gi 1907139925 2084 KIQRSQLEK 2092
Cdd:TIGR02168 478 DAAERELAQ 486
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
434-1099 |
5.61e-13 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 74.87 E-value: 5.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 434 APPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLeeaiqqkkisEAEKDLLLKQLSGRLQHL-NRLRQE 512
Cdd:pfam12128 240 RPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQET----------SAELNQLLRTLDDQWKEKrDELNGE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 513 aldleiqMEKQRKEIAEKHEEIntvqlatDSLDPKDPKHSHMKAQKRGKEQQldimnrQYTQLESRLDEILCRIAKETEE 592
Cdd:pfam12128 310 -------LSAADAAVAKDRSEL-------EALEDQHGAFLDADIETAAADQE------QLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 593 IKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDE-KETLLQRLTEVQQEKEELELIAMDA 671
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 672 --------------ENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQL-KLKDAE--TSQLKQELEKLLRRT 734
Cdd:pfam12128 450 klrlnqatatpellLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASeALRQASrrLEERQSALDELELQL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 735 QLEQSVLQTELEKERESLRDALGKAQSSEEKqqenneLRTQLKQLQDDNSlLKKQLKEFQNHLNhvVDGLIHPEEVAARv 814
Cdd:pfam12128 530 FPQAGTLLHFLRKEAPDWEQSIGKVISPELL------HRTDLDPEVWDGS-VGGELNLYGVKLD--LKRIDVPEWAASE- 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 815 DELRKRLklgagemrihspsDVLGKSL---ADLQKQFSEILARSQWEKEEAQVRE---RKLHEEMALQQEKLANGQEEFR 888
Cdd:pfam12128 600 EELRERL-------------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 889 QACERALEARikfdKRQHNARIQQLENEIHYLQENLKSMEKIQgltDLQLQEADEEKeriLAQLQELEKKKKREDARSQE 968
Cdd:pfam12128 667 DKKNKALAER----KDSANERLNSLEAQLKQLDKKHQAWLEEQ---KEQKREARTEK---QAYWQVVEGALDAQLALLKA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 969 QFL----GLDEELKSLKKAVAAS-DKLAAAELTIAK--DQLKSLHGTVVRINQERAEELQ----EAERFSREAMQAAKDL 1037
Cdd:pfam12128 737 AIAarrsGAKAELKALETWYKRDlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQL 816
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 1038 SRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEieaLNEAMAKQRAEITRLRDV 1099
Cdd:pfam12128 817 SNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR---LSENLRGLRCEMSKLATL 875
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1578-2092 |
5.91e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 5.91e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1578 LQAKRAE-LETLKSQVTSQQQELAVLD-SELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEEL 1655
Cdd:TIGR02168 207 RQAEKAErYKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1656 SFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVD 1735
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1736 VLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQ----- 1810
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEleele 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1811 RVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVA---EVQQQLQGKQEAINSLQEELDSTQDHLDLAK 1887
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDsleRLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1888 Q--------------------DLIHTTKCQNELLNEQTQLQEDISKWM---------ARLESCQKETETKEQQVQQLQDE 1938
Cdd:TIGR02168 527 ElisvdegyeaaieaalggrlQAVVVENLNAAKKAIAFLKQNELGRVTflpldsikgTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1939 IRESKLRL---------------------------------------------------DQQEMMFQKLQKEREREEQKF 1967
Cdd:TIGR02168 607 LVKFDPKLrkalsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKI 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1968 EAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLAL 2047
Cdd:TIGR02168 687 EE----LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1907139925 2048 QKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEK 2092
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1403-1966 |
7.72e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.38 E-value: 7.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1403 NLMTELEI--EKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELactKEKTKSAVEKFTDAKRNLLQTESDA 1480
Cdd:pfam15921 296 SIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL---EKQLVLANSELTEARTERDQFSQES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1481 EALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAA 1560
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1561 QHSEDHHLQvlresetllqakraELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:pfam15921 453 IQGKNESLE--------------KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1641 KCSHIREVKSLLEELSFQKGELNvHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR-----------------HKTELKN 1703
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGD-HLRNVQTECEALKLQMAEKDKVIEILRQQIENmtqlvgqhgrtagamqvEKAQLEK 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1704 VADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQR-QLLErdrrETERVRAESQALQ 1782
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERdQLLN----EVKTSRNELNSLS 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1783 SCVECLSKEKEDlqgqceswekksshaqrvlaateESNKMEQSNlGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQL 1862
Cdd:pfam15921 674 EDYEVLKRNFRN-----------------------KSEEMETTT-NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1863 QGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRES 1942
Cdd:pfam15921 730 MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANM 809
|
570 580
....*....|....*....|....
gi 1907139925 1943 KLRLDQQEMMFQKLQKEREREEQK 1966
Cdd:pfam15921 810 EVALDKASLQFAECQDIIQRQEQE 833
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1330-2039 |
1.44e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1330 RLEDIMQHLKSKQREERRQKASTQHS-EEEVDGLHRDIDDLLQEKKELEleveelhRTIERHQQRKDFIDGHVENLMTEL 1408
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGElEAEIASLERSIAEKERELEDAE-------ERLAKLEAEIDKLLAEIEELEREI 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1409 EIEKSLKhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQ 1488
Cdd:TIGR02169 346 EEERKRR--DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1489 ETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHL 1568
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1569 QVLRES---ETLLQAKRAELETLKSQVTSQQQELAV-LDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVA--EKC 1642
Cdd:TIGR02169 504 ERVRGGravEEVLKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLplNKM 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1643 SHIREVKSLLEELSFQKGELNVHISEKKTQLA--------LIQQEMEKEEKNLQVVlqQLSRHKTELKNVADILQLETSE 1714
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtLVVEDIEAARRLMGKY--RMVTLEGELFEKSGAMTGGSRA 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1715 LQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQscveclsKEKED 1794
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE-------QEEEK 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1795 LQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDklALHSEVAEVQQQLQGKQEAINSLQE 1874
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1875 ELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLdqqemmfQ 1954
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL-------G 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1955 KLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIE---GLERMLSQAKQQLS 2031
Cdd:TIGR02169 886 DLKKERDELEAQLRE----LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipEEELSLEDVQAELQ 961
|
....*...
gi 1907139925 2032 EREQQLMA 2039
Cdd:TIGR02169 962 RVEEEIRA 969
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
3.16e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.12 E-value: 3.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 83 ITEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRYIENLEKCVKLEVLNLSYNLIVKIEKVDKLLRLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 163 EGLENMCNLQKLNLAGNEIEHIPVWFAkKLKSLRVLNLKGNKISSLQDVskLKPLQDLTSLVLIDNPVVALPHylqfIIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLPEP--LGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 1907139925 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
708-1687 |
5.18e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 5.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 708 ELETQLKL--KDAETSQLKQELEKLLRRTQLEQSVLQ-TELEKERESLRDALGKAQSSEEKQQEN-NELRTQLKQLQDDN 783
Cdd:TIGR02168 197 ELERQLKSleRQAEKAERYKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAElQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 784 SLLKKQL----KEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIH-SPSDVLGKSLADLQKQFSEILARSQWE 858
Cdd:TIGR02168 277 SELEEEIeelqKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELeSKLDELAEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 859 KEEAQVRERKLhEEMALQQEKLANGQEEFRQAceralEARIKFDKRQHNARIQQLENEIHYLQENLksmekiqgltdlql 938
Cdd:TIGR02168 357 EAELEELEAEL-EELESRLEELEEQLETLRSK-----VAQLELQIASLNNEIERLEARLERLEDRR-------------- 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 939 qeaDEEKERILAQLQELEKKKKREdarSQEQFLGLDEELKSLKKAVAASdklaaaeltiakdqlkslhgtvvrinQERAE 1018
Cdd:TIGR02168 417 ---ERLQQEIEELLKKLEEAELKE---LQAELEELEEELEELQEELERL--------------------------EEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1019 ELQEAERFSREAMQAAK-DLSRAEAEIELLQHLLREREGQFRDE---MENADL--GAKGANSQLLEIEALNEAmakqrae 1092
Cdd:TIGR02168 465 ELREELEEAEQALDAAErELAQLQARLDSLERLQENLEGFSEGVkalLKNQSGlsGILGVLSELISVDEGYEA------- 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1093 itrlrdvlnltgagtkgGIENVLEEIAE--LRHAVSAQNEYISSMADPfrRQGWWYFMPPAPSSKVSSHSSQATKDSGLG 1170
Cdd:TIGR02168 538 -----------------AIEAALGGRLQavVVENLNAAKKAIAFLKQN--ELGRVTFLPLDSIKGTEIQGNDREILKNIE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1171 LKYTASTPLRKPQPGQQeekdssgplPASGYWVYSPIRstlhksfskredADSGGDSQEESGLDDQEEPpFVPPPGYImy 1250
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLR---------KALSYLLGGVLV------------VDDLDNALELAKKLRPGYR-IVTLDGDL-- 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1251 tvlpdgspvpqgvalyapspplpnsshpLTPGTVVYGpppagapiiyGPPPANfAVPLvpagvqhcnipehhNLENEVSR 1330
Cdd:TIGR02168 655 ----------------------------VRPGGVITG----------GSAKTN-SSIL--------------ERRREIEE 681
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1331 LEDIMQHLKSKQRE--ERRQKASTQHS--EEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVENLMT 1406
Cdd:TIGR02168 682 LEEKIEELEEKIAEleKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1407 ELE-----IEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKektksavEKFTDAKRNLLQTESDAE 1481
Cdd:TIGR02168 762 EIEeleerLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-------EEAANLRERLESLERRIA 834
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1482 ALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ 1561
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQ-ELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE 994
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*..
gi 1907139925 1641 kcshIREVKSLLEELSFQKGELNvhisEKKTQLALIQQEMEKEEKNL 1687
Cdd:TIGR02168 995 ----YEELKERYDFLTAQKEDLT----EAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
585-961 |
1.79e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 585 RIAKETEEIKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKE 662
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 663 ELELIAMDAENMRKEL-AELESALQEQHEVNASLQQAQGDLSAYET---ELETQLKLKDAETSQLKQELEKLLRRTQLEQ 738
Cdd:TIGR02168 758 ELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 739 SVLqTELEKERESLRDALGKAQSSEEKQQEN-NELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDEL 817
Cdd:TIGR02168 838 RRL-EDLEEQIEELSEDIESLAAEIEELEELiEELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 818 RKRLKLgagemrihspsdvlgksladLQKQFSEILARsqweKEEAQVRERKLHEEMALQQEKLANGQEEfrqaceraLEA 897
Cdd:TIGR02168 914 RRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LEN 961
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 898 RIKFDKRQHNARIQQLENEIHYLQE-NLKSMEkiqgltdlQLQEADEEKERILAQLQELEKKKKR 961
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENKIKELGPvNLAAIE--------EYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1319-1911 |
3.15e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1319 PEHHNLENEVSRLEDIMQHLKSKQREerrqkastqhSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFID 1398
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEE----------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1399 GHVENLMTELEIEKSLKHHEDIVDEIECLEKTllkrRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTES 1478
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEEL----QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1479 DAEALEKRaQETALNLVKAEQQLRLLQADAEDL----EQHKIKQEEILKEI--NKVVAAKDADFQCLNEKKEKLTEELQS 1552
Cdd:TIGR02168 497 LQENLEGF-SEGVKALLKNQSGLSGILGVLSELisvdEGYEAAIEAALGGRlqAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1553 LQRDIKAAQHSEDHHLQVLRESETLLQAK----------RAELETLKSQV---------------TSQQQELAVLDSEL- 1606
Cdd:TIGR02168 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAkdlvkfdpklRKALSYLLGGVlvvddldnalelakkLRPGYRIVTLDGDLv 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1607 --------GHRREELLLLQ-----DSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQL 1673
Cdd:TIGR02168 656 rpggvitgGSAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1674 ALIQQEMEKEEKNLQvvlqQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELE----KAQVDVLEEKLELENLQQA 1749
Cdd:TIGR02168 736 ARLEAEVEQLEERIA----QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaqieQLKEELKALREALDELRAE 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1750 TQQQRRELERQRQLLERDRRETERVRAESQALQSC-------VECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKM 1822
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQieelsedIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1823 EQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEEL-DSTQDHLDLAKQDLIHTTKCQNELL 1901
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEAR 971
|
650
....*....|
gi 1907139925 1902 NEQTQLQEDI 1911
Cdd:TIGR02168 972 RRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1691-2032 |
4.35e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 4.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1691 LQQLSRHKTELKNVADIL-----QLETSELQGLK-LQHDQKVVELEKAQVDV--------LEEKLELENLQQATQQQRRE 1756
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILnelerQLKSLERQAEKaERYKELKAELRELELALlvlrleelREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1757 LERQRQLLERD----RRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLEL 1832
Cdd:TIGR02168 258 LTAELQELEEKleelRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1833 SVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDIS 1912
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1913 KWMARLESCQKETETKeqqvqqlqdEIRESKLRLDQQEMMFQKLQKEREREEQKFEagkvTLEQQQRQLEKELTDQKSRL 1992
Cdd:TIGR02168 418 RLQQEIEELLKKLEEA---------ELKELQAELEELEEELEELQEELERLEEALE----ELREELEEAEQALDAAEREL 484
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907139925 1993 KQLltdvsaaEGRLGTLQEEERRIEGLERMLSQAKQQLSE 2032
Cdd:TIGR02168 485 AQL-------QARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1345-2083 |
4.81e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 68.61 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1345 ERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVENLMTELEIEKSLKHH--EDIVD 1422
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1423 EIECLEKTLLKRRSELREADRLLAEaenelactkektksavekFTDAKRNLLQTESDAEALEKRAQETALNlvkaeqqlr 1502
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVD------------------FEEASGKKIYEHDSMSTMHFRSLGSAIS--------- 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1503 llqadaedleqhkikqeEILKEINKVVAAKDADFQCLNEKKEKLTEELQSlQRDIKAAQHsEDHHLQVLRESETLLQAKR 1582
Cdd:pfam15921 224 -----------------KILRELDTEISYLKGRIFPVEDQLEALKSESQN-KIELLLQQH-QDRIEQLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1583 AELETLKSQVTSQQQELAVLDSELGHRRE----ELLLLQDSLAQAKADLQEALTLGETEVaekcshirevksllEELSFQ 1658
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKI--------------EELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1659 KGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLE 1738
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQR 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1739 EKLELENLQQATQQQrreLERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQ---CESWEKKSSHAQRVLAA 1815
Cdd:pfam15921 431 LEALLKAMKSECQGQ---MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1816 TEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL---HSEVAEVQQQLQGKQEAINSLQEELDSTQ----DHLDLAKQ 1888
Cdd:pfam15921 508 KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvQTECEALKLQMAEKDKVIEILRQQIENMTqlvgQHGRTAGA 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1889 DLIHTTKCQNELLNEQTQLQE----------DISKWMARLESCQKE--------------TETKEQQVQQLQDEIRESKL 1944
Cdd:pfam15921 588 MQVEKAQLEKEINDRRLELQEfkilkdkkdaKIRELEARVSDLELEkvklvnagserlraVKDIKQERDQLLNEVKTSRN 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1945 RLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQ--------------LLTDVSAAEGRLGTLQ 2010
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsdghamkvamgMQKQITAKRGQIDALQ 747
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 2011 EeerRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQfltERKKAEKqVAGLKEAL 2083
Cdd:pfam15921 748 S---KIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ---ERRLKEK-VANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
270-825 |
8.33e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 8.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 270 EEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCEELESDLSTKKELLKQKTVELTRACQKQ 349
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 350 YELEQELAfyKIDAKFEPLNyypSEYAEIDKypdespyigKSRYKRNMFATETYIVSDAQAVQIRKMVPEGGQLRHEHTP 429
Cdd:COG1196 326 AELEEELE--ELEEELEELE---EELEEAEE---------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 430 PRVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRL 509
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 510 RQEALDLEIQMEKQRKEIAEKHEEINTVQlATDSLDPKDPKHSHMKAQKRGKEQQLDIM----NRQYTQLESRLDEILCR 585
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAE-ADYEGFLEGVKAALLLAGLRGLAGAVAVLigveAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 586 IAKETEEIkdleqqltdgQIAANEALKKDLEGVISGLQeyLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELE 665
Cdd:COG1196 551 IVVEDDEV----------AAAAIEYLKAAKAGRATFLP--LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 666 LIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTEL 745
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 746 EKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNsLLKKQLKEFQNHLNHVVDGLIHP---EEVAARVDELRKRLK 822
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE-LLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIE 777
|
....
gi 1907139925 823 -LGA 825
Cdd:COG1196 778 aLGP 781
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
119-244 |
9.87e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 66.11 E-value: 9.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 119 ENLEKCVKLEVLNLSYNLIVKIEKVDKLLRLRELNLSYNKISKIEGLENMCNLQKLNLAGNEIEHIPVWFAKKLKSLRVL 198
Cdd:COG4886 222 EPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907139925 199 NLKGNKISSLQDVSKLKPLQDLTSLVLIDNPVVALPHYLQFIIFHL 244
Cdd:COG4886 302 LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLL 347
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1518-2092 |
1.81e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.40 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1518 QEEILKEINKVVAAKDADfqcLNEKKEKLTEELQSLQRDIKAAQHsedhhlQVLRESETLLQAKRAELETLKSQvtsqQQ 1597
Cdd:pfam12128 281 RQETSAELNQLLRTLDDQ---WKEKRDELNGELSAADAAVAKDRS------ELEALEDQHGAFLDADIETAAAD----QE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1598 ELAVLDSELGHRREELLLLQDSlaqaKADLQEALTLGETEVAEKCShiREVKSLLEELSFQKgelnvhiSEKKTQLALIQ 1677
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGK----HQDVTAKYNRRRSKIKEQNN--RDIAGIKDKLAKIR-------EARDRQLAVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1678 QEMEKEEKNLQvvlQQLSRHKTELKNVADILQLETSELQG----------LKLQHDQKVVELEKAQVDVLEEKLELENLQ 1747
Cdd:pfam12128 415 DDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpeLLLQLENFDERIERAREEQEAANAEVERLQ 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1748 QATQQQRRELERQRQLLERDRRETERVRAESQALQ--------SCVECLSKEKEDLQgqcESWEKKSSHAQrvLAATE-- 1817
Cdd:pfam12128 492 SELRQARKRRDQASEALRQASRRLEERQSALDELElqlfpqagTLLHFLRKEAPDWE---QSIGKVISPEL--LHRTDld 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1818 ----ESNKMEQSNLGKLELSVRK------------LRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQD 1881
Cdd:pfam12128 567 pevwDGSVGGELNLYGVKLDLKRidvpewaaseeeLRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFART 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1882 HLDLAKQDLIH-TTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLrldqqEMMFQKLQKER 1960
Cdd:pfam12128 647 ALKNARLDLRRlFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR-----EARTEKQAYWQ 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1961 EREEQKfeagKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLG----TLQEEERRIEGLERMLSQAKQQLSE---- 2032
Cdd:pfam12128 722 VVEGAL----DAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGvdpdVIAKLKREIRTLERKIERIAVRRQEvlry 797
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 2033 --------------REQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEK 2092
Cdd:pfam12128 798 fdwyqetwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSK 871
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1835-2033 |
1.85e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 65.17 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1835 RKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKW 1914
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1915 MARLESCQKETETK------------------EQQVQQLQDEIREskLRLDQQEMmfQKLQKEREREEQKFEAGKVTLEQ 1976
Cdd:COG4942 110 LRALYRLGRQPPLAlllspedfldavrrlqylKYLAPARREQAEE--LRADLAEL--AALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1977 QQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSER 2033
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1409-2024 |
2.59e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.86 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1409 EIEKSLKHHEDIVDEIECLEKTL---LKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEK 1485
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELeevLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1486 RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKeinkvvaakdadfqcLNEKKEKLTEELQSLQRDikaaqhsed 1565
Cdd:PRK03918 260 KIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK---------------LSEFYEEYLDELREIEKR--------- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1566 hhLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDslaqAKADLQEaltLGETEVAEKCSHI 1645
Cdd:PRK03918 316 --LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE----AKAKKEE---LERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1646 REVKSLLEELSFQKGELNVHISEKKTQLAliqqEMEKEEKNLQVVLQQLSRHKTElknvadilqletSELQGLKLQHDQK 1725
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIG----ELKKEIKELKKAIEELKKAKGK------------CPVCGRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1726 VVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRetervraesqalqscvecLSKEKEDLQGQCESWEKK 1805
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE------------------LIKLKELAEQLKELEEKL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1806 SSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSqdklALHSEVAEVQQQLQGKQEAINSLQEELD----STQD 1881
Cdd:PRK03918 513 KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE----ELKKKLAELEKKLDELEEELAELLKELEelgfESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1882 HLDLAKQDLIHTTKCQNELLNEQTQLQEDISkwmaRLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKERE 1961
Cdd:PRK03918 589 ELEERLKELEPFYNEYLELKDAEKELEREEK----ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 1962 REEqkfeagKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLS 2024
Cdd:PRK03918 665 REE------YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1330-2096 |
3.29e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 65.84 E-value: 3.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1330 RLEDIMQHLKSKQREERRQKASTQhseEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHVENLMTELE 1409
Cdd:TIGR00606 302 QLNDLYHNHQRTVREKERELVDCQ---RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1410 IEkSLKHHEDIVDEIECLEKtlLKRRSELREAdRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQT-ESDAEALEKRaQ 1488
Cdd:TIGR00606 379 LD-GFERGPFSERQIKNFHT--LVIERQEDEA-KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTiELKKEILEKK-Q 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1489 ETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvAAKDADFQCLNEKKEKLTEELQSLQRDIKA-AQHSE--D 1565
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSK-----AEKNSLTETLKKEVKSLQNEKADLDRKLRKlDQEMEqlN 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1566 HHLQVLRESETLLQAKRAELETLKSQVTSQQQELA----------VLDSELGHRREELLLLQDSLAQAKADLQEALTLge 1635
Cdd:TIGR00606 529 HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQN-- 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1636 tevaeKCSHIREVKSLLE-ELSFQKGELNVHISE-KKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADilqlETS 1713
Cdd:TIGR00606 607 -----KNHINNELESKEEqLSSYEDKLFDVCGSQdEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD----ENQ 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1714 ELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQ----LLERDRRETERVRAESQALQSCVECLS 1789
Cdd:TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDemlgLAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1790 KEKEDLQGQCESWEKKSShaqrVLAATEESNKMEQSNLG---KLELSVRKLRQELEQLSQ--DKLALHSEVAEVQQQLQG 1864
Cdd:TIGR00606 758 RDIQRLKNDIEEQETLLG----TIMPEEESAKVCLTDVTimeRFQMELKDVERKIAQQAAklQGSDLDRTVQQVNQEKQE 833
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1865 KQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDiskwMARLESCQKETETKEQQVQQLQDEIRESKL 1944
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN----LQRRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1945 RLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSaaEGRLGTLQEEERRIEGLermls 2024
Cdd:TIGR00606 910 QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ--DGKDDYLKQKETELNTV----- 982
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 2025 qaKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFltERKKAEKQVAGLKEALKIQRSQLEKNLLL 2096
Cdd:TIGR00606 983 --NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL--TLRKRENELKEVEEELKQHLKEMGQMQVL 1050
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1418-2036 |
4.75e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 4.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1418 EDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKA 1497
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1498 EQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEK--------------KEKLTEELQSLQRDIKAA--Q 1561
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKyndlkkqkeeleneLNLLEKEKLNIQKNIDKIknK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 HSEDHH----LQVLRESETLLQAKRAELE----TLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEA--- 1630
Cdd:TIGR04523 196 LLKLELllsnLKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqke 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1631 LTLGETEVAEKCSHIREVKSLLEELSFQK-----GELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNva 1705
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN-- 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1706 dilqlETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCV 1785
Cdd:TIGR04523 354 -----SESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1786 ECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLsqdklalhsevaevQQQLQGK 1865
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK--------------QKELKSK 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1866 QEAINSLQEEldstqdhldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLR 1945
Cdd:TIGR04523 495 EKELKKLNEE---------------------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1946 LDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQ-----RQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLE 2020
Cdd:TIGR04523 554 LKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEkqeliDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
650
....*....|....*.
gi 1907139925 2021 RMLSQAKQQLSEREQQ 2036
Cdd:TIGR04523 634 KNIKSKKNKLKQEVKQ 649
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1432-2032 |
5.60e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 5.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1432 LKRRSELREADRLLAEAENELACTKEKTKS-----AVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQA 1506
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERinrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1507 DAEDLEQHKIKQEEILKEinkvvaakdadfqclnEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELE 1586
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQ----------------EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLC 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1587 TLKSQVTSQQQELAVLDSELGHRREELLLL--QDSLAQAKADLQEALTLGETEVAE-KCSHIREVKSLLEELSFQKGELN 1663
Cdd:TIGR00618 400 KELDILQREQATIDTRTSAFRDLQGQLAHAkkQQELQQRYAELCAAAITCTAQCEKlEKIHLQESAQSLKEREQQLQTKE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1664 VhISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLEL 1743
Cdd:TIGR00618 480 Q-IHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1744 ENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1823
Cdd:TIGR00618 559 ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1824 QSNLGKL---------------ELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHL----- 1883
Cdd:TIGR00618 639 QELALKLtalhalqltltqervREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeydr 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1884 -----DLAKQDLIHTTKCQNELLNEQTQLQEDISKWM--ARLESCQKETE---TKEQQVQQLQDEIRESKLRLDQQEMMF 1953
Cdd:TIGR00618 719 efneiENASSSLGSDLAAREDALNQSLKELMHQARTVlkARTEAHFNNNEevtAALQTGAELSHLAAEIQFFNRLREEDT 798
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1954 QKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSE 2032
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
606-932 |
1.02e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 606 AANEALKKdLEGVISGLQEYLGTIKGQATQAQnECRKLQDEKETL-----LQRLTEVQQEKEELELIAMDAENMRKELA- 679
Cdd:TIGR02168 183 RTRENLDR-LEDILNELERQLKSLERQAEKAE-RYKELKAELRELelallVLRLEELREELEELQEELKEAEEELEELTa 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 680 ----------ELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLlrrtqleqSVLQTELEKER 749
Cdd:TIGR02168 261 elqeleekleELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL--------EAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 750 ESLRDALgkaqssEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDELRKRLKLGAGEMR 829
Cdd:TIGR02168 333 DELAEEL------AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 830 IhspSDVLGKSLADLQKQFSEILARSQWEKEEAQVRErkLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQhnAR 909
Cdd:TIGR02168 404 R---LEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEELERLEEALEELREELEEAE--QA 476
|
330 340
....*....|....*....|...
gi 1907139925 910 IQQLENEIHYLQENLKSMEKIQG 932
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQE 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1455-2039 |
1.19e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1455 TKEKTKSAVEKFTD---AKRNLLQTESDAEALEkRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEeilkeinkvVAA 1531
Cdd:COG4913 223 TFEAADALVEHFDDlerAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRR---------LEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1532 KDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRES--------ETLLQAKRAELETLKSQVTSQQQELAVLD 1603
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1604 SELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEkcshirevkslleeLSFQKGELNVHISEKKTQLALIQQEMEKE 1683
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAE--------------AEAALRDLRRELRELEAEIASLERRKSNI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1684 EKNLQVVLQQLSRH----KTELKNVADILQLETSE----------LQGLKL------------------QHDQKVVELEK 1731
Cdd:COG4913 439 PARLLALRDALAEAlgldEAELPFVGELIEVRPEEerwrgaiervLGGFALtllvppehyaaalrwvnrLHLRGRLVYER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1732 AQVDVLEEKLELENLQQ-----------------------------ATQQQ-------------------------RREL 1757
Cdd:COG4913 519 VRTGLPDPERPRLDPDSlagkldfkphpfrawleaelgrrfdyvcvDSPEElrrhpraitragqvkgngtrhekddRRRI 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1758 ERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEesnkmEQSNLGKLELSVRKL 1837
Cdd:COG4913 599 RSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSW-----DEIDVASAEREIAEL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1838 RQELEQLSQDklalHSEVAEVQQQLQGKQEAINSLQEELDSTQDHldlakqdlihttkcQNELLNEQTQLQEDISKWMAR 1917
Cdd:COG4913 674 EAELERLDAS----SDDLAALEEQLEELEAELEELEEELDELKGE--------------IGRLEKELEQAEEELDELQDR 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1918 LESCQKETEtkEQQVQQLQDEIRESKLRLDQQEmMFQKLQKEREREEQKfeagkvtLEQQQRQLEKELTDQKSRLKQLLT 1997
Cdd:COG4913 736 LEAAEDLAR--LELRALLEERFAAALGDAVERE-LRENLEERIDALRAR-------LNRAEEELERAMRAFNREWPAETA 805
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1907139925 1998 DVSAAEGRLGTLQEEERRIE--GLERMLSQAKQQLSEREQQLMA 2039
Cdd:COG4913 806 DLDADLESLPEYLALLDRLEedGLPEYEERFKELLNENSIEFVA 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1431-1805 |
1.87e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1431 LLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQetalnlvKAEQQLRLLQADAED 1510
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-------KLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1511 LEQHKIKQEEILKEINKVVAAKDadfqclnEKKEKLTEELQSLQRDIkaAQHSEDHHLQVLRESETLLQAKRAELETLKS 1590
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELE-------EDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1591 QVTSQQQELAVLDSELGHRREELLLLQDSlaqaKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKK 1670
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQ----IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1671 TQLaliqQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQhDQKVVELEKAQVDVleeklelenlqqat 1750
Cdd:TIGR02169 896 AQL----RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLEDV-------------- 956
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1751 QQQRRELERQRQLLE----RDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK 1805
Cdd:TIGR02169 957 QAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
442-1069 |
2.11e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.01 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 442 DTEKKISAAQ---TRLSELHHEIETAEQKVlRATQEFKQLEEAIQQKKISEAEKDLLLKQLsgrlqHLNRLRQEALDLEI 518
Cdd:COG4913 222 DTFEAADALVehfDDLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAAL-----RLWFAQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 519 QMEKQRKEIAEKHEEINTVQlatdsldpkdpkhshmkAQKRGKEQQLDIMNRQYTQLE-SRLDEILCRIAKETEEIKDLE 597
Cdd:COG4913 296 ELEELRAELARLEAELERLE-----------------ARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 598 QQLTDGQIAAnEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELEliamdaenmrKE 677
Cdd:COG4913 359 RRRARLEALL-AALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE----------AE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 678 LAELESAlqeQHEVNASLQQAQgdlsayeTELETQLKLKD------AETSQLKQE-------LEKLLR--RTQL--EQSV 740
Cdd:COG4913 428 IASLERR---KSNIPARLLALR-------DALAEALGLDEaelpfvGELIEVRPEeerwrgaIERVLGgfALTLlvPPEH 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 741 LQTELEK-ERESLRdalGKAQSSEEKQQENNELRTQLkqlqDDNSLLKK---QLKEFQNHLNHVvdgLIHPEEVA--ARV 814
Cdd:COG4913 498 YAAALRWvNRLHLR---GRLVYERVRTGLPDPERPRL----DPDSLAGKldfKPHPFRAWLEAE---LGRRFDYVcvDSP 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 815 DELRK-----------RLKLGAGEM--RIHSPSD-VLGKS----LADLQKQfseiLARSQWEKEEAQVRERKLHEEMALQ 876
Cdd:COG4913 568 EELRRhpraitragqvKGNGTRHEKddRRRIRSRyVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEAELDAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 877 QEKLANgqeefRQACERALEARIkfDKRQHNARIQQLENEihyLQENLKSMEKIQGLTDlQLQEADEEKERILAQLQELE 956
Cdd:COG4913 644 QERREA-----LQRLAEYSWDEI--DVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEEELDELK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 957 KKKKRedarsqeqflgLDEELKSLKKAV-AASDKLAAAELTIAKDQLKSLhgtvvrinQERAEELQEAERFSREAMQAAK 1035
Cdd:COG4913 713 GEIGR-----------LEKELEQAEEELdELQDRLEAAEDLARLELRALL--------EERFAAALGDAVERELRENLEE 773
|
650 660 670
....*....|....*....|....*....|....*.
gi 1907139925 1036 DLSRAEAEIELLQHLLREREGQFRDE--MENADLGA 1069
Cdd:COG4913 774 RIDALRARLNRAEEELERAMRAFNREwpAETADLDA 809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
441-985 |
2.28e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 2.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 441 EDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALDLEIQM 520
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 521 EKQRKEIAEKHEEINTVQlatdsldpkdpkhshmkaQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQL 600
Cdd:PRK03918 269 EELKKEIEELEEKVKELK------------------ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 601 TDGQiaANEALKKDLEGVISGLQEYLGTIKGQAtQAQNECRKLQDEKETLLQRLTEVQQEK--EELELIAMDAENMRKEL 678
Cdd:PRK03918 331 KELE--EKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTGLTPEKleKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 679 AELESALQEQHEVNASLQQAQGDLSA---------------YETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQT 743
Cdd:PRK03918 408 SKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 744 ELEKERE------------SLRDALGK--AQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPEE 809
Cdd:PRK03918 488 VLKKESEliklkelaeqlkELEEKLKKynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 810 VAARVDELRKRLklgagEMRIHSPSDVLGKSLADLQKQFSEI--LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEF 887
Cdd:PRK03918 568 LEEELAELLKEL-----EELGFESVEELEERLKELEPFYNEYleLKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 888 RQACERALEARIKFDKRQHnariQQLENEIHYLQENLKSMEKiqgltdlQLQEADEEKERILAQLQEL-EKKKKREDARs 966
Cdd:PRK03918 643 EELRKELEELEKKYSEEEY----EELREEYLELSRELAGLRA-------ELEELEKRREEIKKTLEKLkEELEEREKAK- 710
|
570
....*....|....*....
gi 1907139925 967 qeqflgldEELKSLKKAVA 985
Cdd:PRK03918 711 --------KELEKLEKALE 721
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
3.60e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 54.45 E-value: 3.60e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 148 RLRELNLSYNKISKIEG--LENMCNLQKLNLAGNEIEHI-PVWFAKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
498-1117 |
3.71e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.24 E-value: 3.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 498 QLSGRLQHLNRLRQEALDLEIQMEkQRKEIAEKHEEINtvqlatdsldpkdpkhshmKAQKRGKEQQLDIMNRQYTQLES 577
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIE-LLEPIRELAERYA-------------------AARERLAELEYLRAALRLWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 578 RLDEILCRIAKETEEIKDLEQQltdgqIAANEALKKDLEGVISGLQEYLGTIKGQA-TQAQNECRKLQDEKETLLQRLTE 656
Cdd:COG4913 289 RLELLEAELEELRAELARLEAE-----LERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 657 VQQEKEELELiamDAENMRKELAELESALQEQHEvnaSLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRtql 736
Cdd:COG4913 364 LEALLAALGL---PLPASAEEFAALRAEAAALLE---ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 737 eQSVLQTELEKERESLRDALGKAQSseekqqennELR--TQLKQLQDDNsllkkqlKEFQNHLNHVVDG----LIHPEE- 809
Cdd:COG4913 435 -KSNIPARLLALRDALAEALGLDEA---------ELPfvGELIEVRPEE-------ERWRGAIERVLGGfaltLLVPPEh 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 810 ---VAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADlqkqfsEILARSQWEKEEAQVR-ERKLHEEMALQQeklANGQE 885
Cdd:COG4913 498 yaaALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPD------SLAGKLDFKPHPFRAWlEAELGRRFDYVC---VDSPE 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 886 EFRQAcERAL--EARIKFDKRQHNARIQQLENEIHYLQENlkSMEKIQGLTDlQLQEADEEKERILAQLQELEKKKKRED 963
Cdd:COG4913 569 ELRRH-PRAItrAGQVKGNGTRHEKDDRRRIRSRYVLGFD--NRAKLAALEA-ELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 964 ARsQEQFLGLDEELKSLKKAVAASDKLAaaELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAE 1043
Cdd:COG4913 645 ER-REALQRLAEYSWDEIDVASAEREIA--ELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1044 IELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNLTGAGTKGGIENVLEE 1117
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1548-2094 |
5.57e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 5.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1548 EELQSLQRDIKAAQHSEDHhLQVLRESETLLQAKRAELETLKSQVTS-----QQQELAVLDSELGHRREELLLLQDSLAQ 1622
Cdd:COG4913 235 DDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1623 AKADLQEALtlgetevaekcshiREVKSLLEELSFQKGElnvhisekktQLALIQQEMEKEEKNLQVVLQQLSRHKTELK 1702
Cdd:COG4913 314 LEARLDALR--------------EELDELEAQIRGNGGD----------RLEQLEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1703 NVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDR----RETERVRAE- 1777
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDAl 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1778 SQALQScveclsKEKE--------DLQGQCESWEK---------------KSSHAQRVLAATEesnkmeqSNLGKLELSV 1834
Cdd:COG4913 450 AEALGL------DEAElpfvgeliEVRPEEERWRGaiervlggfaltllvPPEHYAAALRWVN-------RLHLRGRLVY 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1835 RKLRQELEQLSQDKLALHSEVAEVQQQlqgKQEAINSLQEELDSTQDHL------DLAKQDLIHTTKCQneLLNEQTQLQ 1908
Cdd:COG4913 517 ERVRTGLPDPERPRLDPDSLAGKLDFK---PHPFRAWLEAELGRRFDYVcvdspeELRRHPRAITRAGQ--VKGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1909 EDISKWMARL----ESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREE--QKFEAGKVTLEQQQRQLE 1982
Cdd:COG4913 592 KDDRRRIRSRyvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIA 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1983 kELTDQKSRLKQLLTDVSAAEGRLGTLQEEerrIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLR 2062
Cdd:COG4913 672 -ELEAELERLDASSDDLAALEEQLEELEAE---LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
570 580 590
....*....|....*....|....*....|....*
gi 1907139925 2063 NQFLTERKKA---EKQVAGLKEALKIQRSQLEKNL 2094
Cdd:COG4913 748 RALLEERFAAalgDAVERELRENLEERIDALRARL 782
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1418-2025 |
5.65e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 5.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1418 EDIVDEIECLEKTLLKRRselreadrlLAEAENELACTKEKtksaVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKA 1497
Cdd:PRK02224 190 DQLKAQIEEKEEKDLHER---------LNGLESELAELDEE----IERYEEQREQARETRDEADEVLEEHEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1498 EQQLRLLQAD-----------AEDLEQHKIKQEEILKEINKVVAA---KDADFQCLNEKKEKLTEELQSLQRDIkaaqhs 1563
Cdd:PRK02224 257 EAEIEDLRETiaeterereelAEEVRDLRERLEELEEERDDLLAEaglDDADAEAVEARREELEDRDEELRDRL------ 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1564 EDHHLQVLRESETLlQAKRAELETLKSQVTSQQQELAVLDSELGHRREELlllqDSLAQAKADLQEALTLGETEVAEKCS 1643
Cdd:PRK02224 331 EECRVAAQAHNEEA-ESLREDADDLEERAEELREEAAELESELEEAREAV----EDRREEIEELEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1644 HIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvLQQLSRHKTELKNVADILQLETSElqglklQHD 1723
Cdd:PRK02224 406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA-----LLEAGKCPECGQPVEGSPHVETIE------EDR 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1724 QKVVELE------KAQVDVLEEKLELENLQQATQQQRRELERQRQLLErDRRETERVRAESQALQscVECLSKEKEDLQG 1797
Cdd:PRK02224 475 ERVEELEaeledlEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE-ELIAERRETIEEKRER--AEELRERAAELEA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1798 QCESWEKKSSHAqrvlaatEESNKMEQSNLGKLELSVRKLRQELEQLsqDKLA-LHSEVAEVQQQLQGKQEAINSLQEEL 1876
Cdd:PRK02224 552 EAEEKREAAAEA-------EEEAEEAREEVAELNSKLAELKERIESL--ERIRtLLAAIADAEDEIERLREKREALAELN 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1877 DSTQDHLDlakqdlihttkcqnELLNEQTQLQEDISKwmARLESCQKETETKEQQVQQLQDEIREsklrldqqemmfqkl 1956
Cdd:PRK02224 623 DERRERLA--------------EKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQVEEKLDE--------------- 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 1957 qKEREREEQKFEAGKVTLEQQQ----RQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE--ERRIEGLERMLSQ 2025
Cdd:PRK02224 672 -LREERDDLQAEIGAVENELEEleelRERREALENRVEALEALYDEAEELESMYGDLRAElrQRNVETLERMLNE 745
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
602-1099 |
7.11e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 602 DGQIAANEAlkKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAEL 681
Cdd:PRK02224 193 KAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 682 ESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKL------LRRTQLEQSVLQTELEKERESLRDA 755
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELedrdeeLRDRLEECRVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 756 LGKAQS-SEEKQQENNEL-------RTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGL----IHPEEVAARVDELRKRLK- 822
Cdd:PRK02224 351 ADDLEErAEELREEAAELeseleeaREAVEDRREEIEELEEEIEELRERFGDAPVDLgnaeDFLEELREERDELREREAe 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 823 ----LGAGEMRIHSPSDVL--------GKSLADlqkqfSEILARSQWEKEEAQVRERKLhEEMALQQEKLANGQEEFRQA 890
Cdd:PRK02224 431 leatLRTARERVEEAEALLeagkcpecGQPVEG-----SPHVETIEEDRERVEELEAEL-EDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 891 CERALEARIKFDKRQH-NARIQQLENEIHYLQENLKSMEKiqgltDLQLQEADEEKERILAQLQELEKKKKREDARSQEQ 969
Cdd:PRK02224 505 VEAEDRIERLEERREDlEELIAERRETIEEKRERAEELRE-----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 970 FLG-LDEELKSLKKAVAASDKLAAAELTIakDQLKSLHGTVVRINQERAEELQE--------AERFSREAMQAAK-DLSR 1039
Cdd:PRK02224 580 KLAeLKERIESLERIRTLLAAIADAEDEI--ERLREKREALAELNDERRERLAEkrerkrelEAEFDEARIEEAReDKER 657
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1040 AEAEIELLQHLLREREGQfRDEMENAdlgAKGANSQLLEIEALNEAMAKQRAEITRLRDV 1099
Cdd:PRK02224 658 AEEYLEQVEEKLDELREE-RDDLQAE---IGAVENELEELEELRERREALENRVEALEAL 713
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1324-1995 |
1.29e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 60.62 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1324 LENEVSRLEDIMQHLKSKQ-REERRQKASTQHS---EEEVDGLHRDI----DDLLQEKKELELEVEELHRTIER-HQQRK 1394
Cdd:pfam12128 253 LESAELRLSHLHFGYKSDEtLIASRQEERQETSaelNQLLRTLDDQWkekrDELNGELSAADAAVAKDRSELEAlEDQHG 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1395 DFIDGHVENLMTELEIEKSLKHHEDIVDEIecLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAK-RNL 1473
Cdd:pfam12128 333 AFLDADIETAAADQEQLPSWQSELENLEER--LKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARdRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1474 LQTESDAEALEK--RAQETALNLVKAEQQLRLLQADAE---DLEQHKIKQEEILKEINKVVAAKDADfqclnEKKEKLTE 1548
Cdd:pfam12128 411 AVAEDDLQALESelREQLEAGKLEFNEEEYRLKSRLGElklRLNQATATPELLLQLENFDERIERAR-----EEQEAANA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1549 ELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQEL-AVLDSELGHRREELLLLQDSLAQAKADL 1627
Cdd:pfam12128 486 EVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLlHFLRKEAPDWEQSIGKVISPELLHRTDL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1628 QEALT----------------LGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKnlqvvl 1691
Cdd:pfam12128 566 DPEVWdgsvggelnlygvkldLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR------ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1692 qQLSRHKTELKNVADILQLETSELQGLKLQHdQKVVELEKAQVdvleekleLENLQQATQQQRRELERQRQLLERDRRET 1771
Cdd:pfam12128 640 -EETFARTALKNARLDLRRLFDEKQSEKDKK-NKALAERKDSA--------NERLNSLEAQLKQLDKKHQAWLEEQKEQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1772 ERVRAESQALQSCVECLSKEKEDLQGQceSWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL 1851
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKA--AIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERI 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1852 HSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihttkcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQ 1931
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISEL------QQQLARLIADTKLRRAKLEMERKASEKQQVRLSEN 861
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 1932 VQQLQDEIRE-SKLRLDQQEMMFQKLQKEREREEQKFeagKVTLEQQQRQLEKELTDQKSRLKQL 1995
Cdd:pfam12128 862 LRGLRCEMSKlATLKEDANSEQAQGSIGERLAQLEDL---KLKRDYLSESVKKYVEHFKNVIADH 923
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1426-2006 |
1.69e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.19 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1426 CLEKTLLKrrSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQ 1505
Cdd:pfam01576 39 CEEKNALQ--EQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1506 ADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSL-------QRDIKAAQHSEDHHLQVLRESETLL 1578
Cdd:pfam01576 117 AARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFtsnlaeeEEKAKSLSKLKNKHEAMISDLEERL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1579 QAK---RAELETLKSQVTSQQQELAVLDSELGHRREELLLlqdSLAQAKADLQEALTLGETEVAEKCSHIREVKslleel 1655
Cdd:pfam01576 197 KKEekgRQELEKAKRKLEGESTDLQEQIAELQAQIAELRA---QLAKKEEELQAALARLEEETAQKNNALKKIR------ 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1656 sfqkgELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADilqlETSELQGLKLQHDQKVVELEKAQVD 1735
Cdd:pfam01576 268 -----ELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLD----TTAAQQELRSKREQEVTELKKALEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1736 vlEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK----SSHAQR 1811
Cdd:pfam01576 339 --ETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKrkklEGQLQE 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1812 VLAATEESNKMEQS---NLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAinsLQEEldstqdhldlAKQ 1888
Cdd:pfam01576 417 LQARLSESERQRAElaeKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQEL---LQEE----------TRQ 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1889 DLIHTTKCQnellneqtQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFE 1968
Cdd:pfam01576 484 KLNLSTRLR--------QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELE 555
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907139925 1969 AGKVTLEQQQRQLEKeLTDQKSRLKQLLTDVSAAEGRL 2006
Cdd:pfam01576 556 ALTQQLEEKAAAYDK-LEKTKNRLQQELDDLLVDLDHQ 592
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1760-1994 |
1.72e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1760 QRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQ 1839
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1840 ELEQLSQdklalhsEVAEVQQQLQgkQEAINSLQEELDSTQDHLDLAKQDLIHttkcqNELLNEQTQLQEDISKWMARLE 1919
Cdd:COG4942 98 ELEAQKE-------ELAELLRALY--RLGRQPPLALLLSPEDFLDAVRRLQYL-----KYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 1920 SCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQ 1994
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1545-1924 |
2.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1545 KLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQak 1624
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS-- 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1625 adLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLalIQQEMEKEEKNLQVVLQQLSRHKTELKNV 1704
Cdd:TIGR02169 749 --LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE--IQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1705 ADILQLETSELQGLKLQhdqkvvelekaqvdvleeklelenlQQATQQQRRELERQRQLLERDRRETERVRAESQALqsc 1784
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQ-------------------------RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA--- 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1785 VECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQqLQG 1864
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LED 955
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1865 KQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKE 1924
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
405-1093 |
2.53e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 405 VSDAQAVQIRKMVPEGGQLRHEHTPPRVQAPPDLQLEDTEKKISAAQtRLSELHHEIETAEQKVLRATQEFKQLEEAiqQ 484
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEA--K 1236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 485 KKISEAEK-------DLLLKQLSGRLQHLNRlRQEALDLEiqmEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQ 557
Cdd:PTZ00121 1237 KDAEEAKKaeeernnEEIRKFEEARMAHFAR-RQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 558 KRGKEQQLdimNRQYTQLESRLDEILCRI--AKETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQ 635
Cdd:PTZ00121 1313 EAKKADEA---KKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 636 AQ--NECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKElAELESALQEQHEVNASLQQAQGDLSAYETEletql 713
Cdd:PTZ00121 1390 KKkaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADEAKKKAEEAKKAEEAK----- 1463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 714 klKDAETSQLKQELEKllrrtQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEf 793
Cdd:PTZ00121 1464 --KKAEEAKKADEAKK-----KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK- 1535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 794 qnhlnhvVDGLIHPEEVAaRVDELRKRLKL-------GAGEMRIHSPSDVLGKSLADLQKQFSE----ILARSQWEKEEA 862
Cdd:PTZ00121 1536 -------ADEAKKAEEKK-KADELKKAEELkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKM 1607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 863 QVRERKLHEEMALQQEKLANGQEEfRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEAD 942
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 943 EEKERILAQLQELEKKKKREDARSQEQFLGLDEELK---SLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEE 1019
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1020 LQEAERFSREAMQAAKDLSRAEAEIELLqhllrEREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEI 1093
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRM-----EVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
622-1125 |
2.60e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 622 LQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGD 701
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 702 LSAYETELETQLK-LKDAETSQLK-QELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQL 779
Cdd:PRK03918 271 LKKEIEELEEKVKeLKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 780 QDDNSLLKKQLKEFQNHLNHVVD--------GLIHPEEVAARVDELRKR--------LKLGAGEMRIHSPSDVLGKSLAD 843
Cdd:PRK03918 351 EKRLEELEERHELYEEAKAKKEElerlkkrlTGLTPEKLEKELEELEKAkeeieeeiSKITARIGELKKEIKELKKAIEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 844 LQKQFSEI-LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQE 922
Cdd:PRK03918 431 LKKAKGKCpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 923 NLKSME-----------------------KIQGLTD--LQLQEADEEKERILAQLQELEKKK----KREDARSQEQFLGL 973
Cdd:PRK03918 511 KLKKYNleelekkaeeyeklkekliklkgEIKSLKKelEKLEELKKKLAELEKKLDELEEELaellKELEELGFESVEEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 974 DEELKSLKKAVAASDKL--AAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEiellqhLL 1051
Cdd:PRK03918 591 EERLKELEPFYNEYLELkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE------EL 664
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1052 REREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLRDVLNLtgagtkggIENVLEEIAELRHAV 1125
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK--------LEKALERVEELREKV 730
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1384-2091 |
3.27e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 3.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1384 HRTIERHQQRKDFIDGHVENLMTELEIE----KSLKHHEDIVDEIECLEKTLLKRRSELREadRLLAEAENELACTKEKT 1459
Cdd:pfam02463 176 KKLIEETENLAELIIDLEELKLQELKLKeqakKALEYYQLKEKLELEEEYLLYLDYLKLNE--ERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1460 KSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCL 1539
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1540 NEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVL-----------DSELGH 1608
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEElelkseeekeaQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1609 RREELLLLQDSLAQAKADLQEALTLGETEVA--EKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKN 1686
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGklTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1687 LQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQK----VVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQ 1762
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGdlgvAVENYKVAISTAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1763 LLERDRRETE----RVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLR 1838
Cdd:pfam02463 574 PLGARKLRLLipklKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVS 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1839 QELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARL 1918
Cdd:pfam02463 654 LEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1919 EScQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTD 1998
Cdd:pfam02463 734 IN-EELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1999 VSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAG 2078
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
730
....*....|...
gi 1907139925 2079 LKEALKIQRSQLE 2091
Cdd:pfam02463 893 EKEKEEKKELEEE 905
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1605-2094 |
3.38e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1605 ELGHRREELlllqDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELnvhiSEKKTQLALIQQEMEKEE 1684
Cdd:PRK03918 173 EIKRRIERL----EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1685 KNLQVVLQQLSRHKTELKNVADILQLETSELQGLKlqhdQKVVELEKAQVDVLEEKLELENLQQaTQQQRRELERQRQLL 1764
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKLSEFYEE-YLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1765 ERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSnlgKLELSVRKLRQELEQL 1844
Cdd:PRK03918 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR---LTGLTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1845 SQDKLALHSEVAEVQQ---QLQGKQEAINSLQEELDSTQDHLDLAKQDLihTTKCQNELLNEQTQLQEDISKWMARLESC 1921
Cdd:PRK03918 397 EKAKEEIEEEISKITArigELKKEIKELKKAIEELKKAKGKCPVCGREL--TEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1922 QKETETKEQQVQ-------------QLQDEIR--ESKL------RLDQQEMMFQKLQ-------------KEREREEQKF 1967
Cdd:PRK03918 475 ERKLRKELRELEkvlkkeseliklkELAEQLKelEEKLkkynleELEKKAEEYEKLKekliklkgeikslKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1968 EAGKVTLEQQQRQLEKELTDQKSRLKQL-LTDVSAAEGRLGTL-----------------QEEERRIEGLERMLSQAKQQ 2029
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELepfyneylelkdaekelEREEKELKKLEEELDKAFEE 634
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 2030 LSEREQQLMAKSGELLALQKEADDmrADFSLLRNQFLTERKKAEKQVAGLKEaLKIQRSQLEKNL 2094
Cdd:PRK03918 635 LAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEE-LEKRREEIKKTL 696
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
635-1062 |
3.55e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.63 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 635 QAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQeQHEVNASLQQAQGDLSAYETELEtQLK 714
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLE-ELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 715 LKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSS-EEKQQENNELRTQLKQLQDDNSLLKKQLKEF 793
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 794 QNHLNHvvdglihpEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQK----------QFSEILARSQWEKEEAQ 863
Cdd:COG4717 233 ENELEA--------AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 864 VRERKLHEEMALQQEKLANGQEEFRqaCERALEARIKFDKRQHNARIQQLENEIHYLQENLK---SMEKIQGLTDLQLQE 940
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 941 ADEEKERILAQLQELEKKKKREdARSQEQFLGLDEELKSL-----KKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQE 1015
Cdd:COG4717 383 DEEELRAALEQAEEYQELKEEL-EELEEQLEELLGELEELlealdEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1016 R---------AEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEM 1062
Cdd:COG4717 462 LeqleedgelAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1429-2064 |
4.54e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1429 KTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADA 1508
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1509 EDLEQHKIKQEEILKEIN------KVVAAKDADFQC----------LNEKKEKLTEELQSLQRDIKAAQ----------- 1561
Cdd:TIGR00618 270 EELRAQEAVLEETQERINrarkaaPLAAHIKAVTQIeqqaqrihteLQSKMRSRAKLLMKRAAHVKQQSsieeqrrllqt 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 -HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:TIGR00618 350 lHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1641 KCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQ--QEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGL 1718
Cdd:TIGR00618 430 KKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQslKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGS 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1719 KLQHDQKVVELEKAQVD---VLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDL 1795
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLtrrMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1796 QGQceswekksshAQRVLAATEESNKMEQSNLGKLELSVRKLrqeleQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEE 1875
Cdd:TIGR00618 590 QNI----------TVRLQDLTEKLSEAEDMLACEQHALLRKL-----QPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1876 L--DSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQ---KETETKE----QQVQQLQDEIRESKLRL 1946
Cdd:TIGR00618 655 LtqERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQtllRELETHIeeydREFNEIENASSSLGSDL 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1947 DQQEMMFQKLQKERERE------------EQKFEAGKVTLE--QQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE 2012
Cdd:TIGR00618 735 AAREDALNQSLKELMHQartvlkarteahFNNNEEVTAALQtgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS 814
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 2013 ERRIEGLE-RMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQ 2064
Cdd:TIGR00618 815 DEDILNLQcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE 867
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
630-984 |
8.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 8.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 630 KGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKEL-AELESALQEQHEVNASLQQAQGDLSAYE-- 706
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 707 --------TELETQLKLKDAETSQLKQELEKL---LRRTQLEQSVLQ-TELEKERESLRDALGKAQSSEEKQQENNELRT 774
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLearLSHSRIPEIQAElSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 775 QLKQ-LQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdVLGKSLADLQKQFSEI-- 851
Cdd:TIGR02169 833 KEIQeLQEQRIDLKEQIKSIEKEI----------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELea 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 852 -LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEfrqacERALEARIKFDKR--QHNARIQQLENEIHYLQENLKSME 928
Cdd:TIGR02169 897 qLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE-----LSEIEDPKGEDEEipEEELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 929 KIQGLtdlqlqeADEEKERILAQLQELEKKKKREdARSQEQFLGLDEELKSLKKAV 984
Cdd:TIGR02169 972 PVNML-------AIQEYEEVLKRLDELKEKRAKL-EEERKAILERIEEYEKKKREV 1019
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1915-2091 |
8.44e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 8.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1915 MARLESCQKETETKEQQVQQLQdEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKV-TLEQQQRQLEKELTDQKSRLK 1993
Cdd:COG4913 234 FDDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLeLLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1994 QLLTDVSAAEGRLGTLQEEER-----RIEGLERMLSQAKQQLSEREQ--------------QLMAKSGELLALQKEADDM 2054
Cdd:COG4913 313 RLEARLDALREELDELEAQIRgnggdRLEQLEREIERLERELEERERrrarleallaalglPLPASAEEFAALRAEAAAL 392
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907139925 2055 RADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLE 2091
Cdd:COG4913 393 LEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
431-1022 |
1.03e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 431 RVQAPPDLQLEDTEKKISAAQTRlsELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLR 510
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 511 QEALDLEIQMEKQRKEIAEKHEEIntvqlatdsldpkdpkhshmkaqkRGKEQQLDimnrqytQLESRLDEILCRIAKET 590
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEV------------------------RDLRERLE-------ELEEERDDLLAEAGLDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQltdgqiaanealKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELEliaMD 670
Cdd:PRK02224 307 ADAEAVEAR------------REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 671 AENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELekllrrtqleqsvlqTELEKERE 750
Cdd:PRK02224 372 LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 751 SLRDALGKAQ----------------------SSEEKQQENNELRTQLKQLQDDNSLLKKQLkefqnhlnhvvDGLIHPE 808
Cdd:PRK02224 437 TARERVEEAEalleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERL-----------ERAEDLV 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 809 EVAARVDELRKRLKLGAGEMRIHSPS-DVLGKSLADLQKQFSEILARSQWEKEEAQvrerKLHEEMALQQEKLANGQEEf 887
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK- 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 888 RQACERALEARIKFDKRQhnARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQ 967
Cdd:PRK02224 581 LAELKERIESLERIRTLL--AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERA 658
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 968 EQFLG--------LDEELKSLKKAVAASDKlAAAELTIAKDQLKSLHGTVVRINQ--ERAEELQE 1022
Cdd:PRK02224 659 EEYLEqveekldeLREERDDLQAEIGAVEN-ELEELEELRERREALENRVEALEAlyDEAEELES 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
463-754 |
1.16e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 463 TAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLrQEALDLEIQMEKQRKEIAEKHEEINTVQLATD 542
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 543 SLdpkdpkhshmkaqkRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGVISGL 622
Cdd:COG4913 686 DL--------------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 623 QEYLGTIKGQATQAQNEcRKLQDEKETLLQRLtevQQEKEELELIamdaenmrkelaeLESALQEQHEVNASLQQAQGDL 702
Cdd:COG4913 752 EERFAAALGDAVERELR-ENLEERIDALRARL---NRAEEELERA-------------MRAFNREWPAETADLDADLESL 814
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 703 SAYETELEtqlKLKDAETSQLKQELEKLLRRTQLE-QSVLQTELEKERESLRD 754
Cdd:COG4913 815 PEYLALLD---RLEEDGLPEYEERFKELLNENSIEfVADLLSKLRRAIREIKE 864
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1667-2074 |
1.33e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1667 SEKKTQLALIQQEME-KEEKNLQvvlQQLSRHKTELKNVadilqleTSELQGLKLQHDQKVVELEKAQvdvlEEKLELEN 1745
Cdd:PRK02224 183 SDQRGSLDQLKAQIEeKEEKDLH---ERLNGLESELAEL-------DEEIERYEEQREQARETRDEAD----EVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1746 LQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCEsweKKSSHAQRVLAATEESNKMEQS 1825
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAG---LDDADAEAVEARREELEDRDEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1826 nlgkLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKqdlihttkcqnellNEQT 1905
Cdd:PRK02224 326 ----LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR--------------EEIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1906 QLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKV------------- 1972
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCpecgqpvegsphv 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1973 -TLEQQQRQLEkELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEA 2051
Cdd:PRK02224 468 eTIEEDRERVE-ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERA 546
|
410 420
....*....|....*....|...
gi 1907139925 2052 DDMRADFSLLRNQFLTERKKAEK 2074
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEE 569
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1427-1641 |
1.51e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.56 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1427 LEKTLLKRRSELREADRLLAE--AENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLL 1504
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1505 QADAE--DLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEdhhLQVLRESETLLQAKR 1582
Cdd:COG3206 260 LQSPViqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1583 AELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKadLQEALTLGETEVAEK 1641
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRVIDP 393
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
856-1130 |
1.52e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 856 QWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIkfdkRQHNARIQQLENEIHYLQENLKSMEKiqgltd 935
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELELEEAQA------ 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 936 lQLQEADEEKERILAQLQELEKKKKREDARSQEqflgLDEELKSLKKAVAAsdklAAAELTIAKDQLKSLHGTVVRINQE 1015
Cdd:COG1196 289 -EEYELLAELARLEQDIARLEERRRELEERLEE----LEEELAELEEELEE----LEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1016 RAEELQEAERFSREAMQAAKDLSRAEAEIELLQhllrEREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITR 1095
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEAL----RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270
....*....|....*....|....*....|....*
gi 1907139925 1096 LRDVLNLTGAGTKGGIENVLEEIAELRHAVSAQNE 1130
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
439-663 |
1.72e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAI--QQKKISEAEKDLLLKQlsgrlQHLNRLRQEALDL 516
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALE-----AELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEIAE------KHEEINTVQLAtdsLDPKDPkhshmkaqkrgkeQQLDIMNRQYTQLESRLDEILCRIAKET 590
Cdd:COG4942 96 RAELEAQKEELAEllralyRLGRQPPLALL---LSPEDF-------------LDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 591 EEIKDLEQQLT------DGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEE 663
Cdd:COG4942 160 AELAALRAELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
1.88e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.83 E-value: 1.88e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 126 KLEVLNLSYNLIVKIEKV--DKLLRLRELNLSYNKISKIEG--LENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGafKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1749-2090 |
1.91e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.50 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1749 ATQQQRRELERQRQLLERDRRETERVRAESQ----ALQSCVECLSKEKEDLQGQCESwekKSSHAQRVLAATEESNKME- 1823
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQyrlvEMARELAELNEAESDLEQDYQA---ASDHLNLVQTALRQQEKIEr 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1824 -QSNLGKLELsvrklRQElEQLSQDKLAlHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLN 1902
Cdd:PRK04863 353 yQADLEELEE-----RLE-EQNEVVEEA-DEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1903 EQTQLQED---ISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQK-----------------ERER 1962
Cdd:PRK04863 426 AKQLCGLPdltADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKiagevsrseawdvarelLRRL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1963 EEQKFEAGKV--------TLEQ---QQRQLEKELTDQKSRLKQLLTDVSAAEGrlgTLQEEERRIEGLERMLSQAKQ--- 2028
Cdd:PRK04863 506 REQRHLAEQLqqlrmrlsELEQrlrQQQRAERLLAEFCKRLGKNLDDEDELEQ---LQEELEARLESLSESVSEARErrm 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 2029 -------QLSEREQQLMAKSGELLALQK----------EADDMRADFSLLRNQFLTERKKA---EKQVAGLKEALKIQRS 2088
Cdd:PRK04863 583 alrqqleQLQARIQRLAARAPAWLAAQDalarlreqsgEEFEDSQDVTEYMQQLLERERELtveRDELAARKQALDEEIE 662
|
..
gi 1907139925 2089 QL 2090
Cdd:PRK04863 663 RL 664
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
448-1106 |
2.04e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 448 SAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKiseaekDLLLKQlsgrlqHLNRLRQEALDLEIQMEKQRKEI 527
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKI------ELLLQQ------HQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 528 AEKHEEINTVQlatdsldpkdpkhSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILC--RIAKETEE--IKDLEQQLTDG 603
Cdd:pfam15921 288 SSARSQANSIQ-------------SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelREAKRMYEdkIEELEKQLVLA 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 604 QIAANEA-LKKDLEGVISG-LQEYLGTIKGQATQAQNECRKLQDEKETLLQRLT----EVQQEKEELELIAMDAENMRKE 677
Cdd:pfam15921 355 NSELTEArTERDQFSQESGnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEAL 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 678 LAELESALQEQHEVNASLQQAQGDLSAYETELETQLklkdaetsqlkQELEKLLRRTQLEQSVLQTELEKERESLRDALG 757
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQL-----------ESTKEMLRKVVEELTAKKMTLESSERTVSDLTA 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 758 KAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHV---VDGL-IHPEEVAARVDELRKRLK----------L 823
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVqteCEALkLQMAEKDKVIEILRQQIEnmtqlvgqhgR 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 824 GAGEMRIHSPSdvLGKSLADLQKQFSEIlaRSQWEKEEAQVRERKLH-EEMALQQEKLANGQEEFRQACERALEARIKFD 902
Cdd:pfam15921 584 TAGAMQVEKAQ--LEKEINDRRLELQEF--KILKDKKDAKIRELEARvSDLELEKVKLVNAGSERLRAVKDIKQERDQLL 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 903 KRQHNAR--IQQLENEIHYLQENLKS----MEKIQGLTDLQLQEADEEKERILAQLQELEKkkkrEDARSQEQFLGLDEE 976
Cdd:pfam15921 660 NEVKTSRneLNSLSEDYEVLKRNFRNkseeMETTTNKLKMQLKSAQSELEQTRNTLKSMEG----SDGHAMKVAMGMQKQ 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 977 LKSLKKAVAAsdklaaaeltiAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIEllqhLLREREG 1056
Cdd:pfam15921 736 ITAKRGQIDA-----------LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE----VLRSQER 800
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 1057 QFRDEMENADLGAKGANSQLLEIEalnEAMAKQRAEITRLR-----DVLNLTGAG 1106
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQ---DIIQRQEQESVRLKlqhtlDVKELQGPG 852
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
439-799 |
2.33e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDL--LLKQLSGRLQHLNRLRQEALDL 516
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPK-----HSHMKAQKRGKEQQLDIMNRQYTQLESRLDEI--LCRIAKE 589
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQdlaeeLEELQQRLAELEEELEEAQEELEELEEELEQLenELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 590 TEEIKDLEQQLT--------DGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQE- 660
Cdd:COG4717 242 EERLKEARLLLLiaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEl 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 661 KEELELIAMDAENMRKELAELESALQEQHEVNASLQQA--QGDLSAYETELETQLKLKDAET-SQLKQELEKLLRRTQLE 737
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeELQLEELEQEIAALLAEAGVEDeEELRAALEQAEEYQELK 401
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 738 Q--SVLQTELEKERESLRDALgKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNH 799
Cdd:COG4717 402 EelEELEEQLEELLGELEELL-EALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
511-732 |
2.57e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 511 QEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLdpkdpkhshmKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKET 590
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQLtdgqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLQDEKETLLQRLTEVQQEKEE 663
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 664 LELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAyetELETQLKLKDAETSQLKQELEKLLR 732
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLA---RLEKELAELAAELAELQQEAEELEA 227
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-802 |
3.07e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 270 EEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCEELESDLSTKKELLKQKTVELTRACQKQ 349
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 350 YELEQELAfyKIDAKFEPLNYYPSEYAEIDKypdespyigKSRYKRNMFATETYIVSDAQAvQIRKMVPEGGQLRHEHTP 429
Cdd:TIGR04523 197 LKLELLLS--NLKKKIQKNKSLESQISELKK---------QNNQLKDNIEKKQQEINEKTT-EISNTQTQLNQLKDEQNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 430 PRVQ-APPDLQLEDTEKKISAAQTRLSELHHEIETAE-QKVLRATQEFK-QLEEAIQQKKISEAEKDLLLKQLSGRLQHL 506
Cdd:TIGR04523 265 IKKQlSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnQKEQDWNKELKsELKNQEKKLEEIQNQISQNNKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 507 NRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPK-----------DPKHSHMKAQKRGKEQQLDIMNRQYTQL 575
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesqindlESKIQNQEKLNQQKDEQIKKLQQEKELL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 576 ESRLDEILCRIAKETEEIKDLEQqltdgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLT 655
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 656 EVQQEKEELELIAMDAENMRKELAELESALQ-EQHEVNASLQQAQGDLSAYETE-----LETQLKLKDAETSQLKQELEK 729
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEDELNKDDFElkkenLEKEIDEKNKEIEELKQTQKS 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 730 LLrRTQLEQSVLQTELEKERESLRDAL---GKAQSSEEKQ-----QENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVV 801
Cdd:TIGR04523 580 LK-KKQEEKQELIDQKEKEKKDLIKEIeekEKKISSLEKElekakKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
.
gi 1907139925 802 D 802
Cdd:TIGR04523 659 N 659
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1866-2072 |
3.55e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1866 QEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLR 1945
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1946 LDQQE----MMFQKLQKEREREEQKF--------EAGKV-----TLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRL-G 2007
Cdd:COG4942 99 LEAQKeelaELLRALYRLGRQPPLALllspedflDAVRRlqylkYLAPARREQAEELRADLAELAALRAELEAERAELeA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 2008 TLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKA 2072
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
441-960 |
3.58e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 441 EDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLsgrlqhlNRLRQEALDLEIQM 520
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQI-------SELKKQNNQLKDNI 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 521 EKQRKEIAEKHEEINTVQlatDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIA-----KETEEIKD 595
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQ---TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 596 LEQQL---------TDGQIAANEALKKDLEGVISGLQEYLG-------TIKGQATQAQNECRKLQDEKETLLQRLTEVQQ 659
Cdd:TIGR04523 312 LKSELknqekkleeIQNQISQNNKIISQLNEQISQLKKELTnsesensEKQRELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 660 EKEELELIAMDAENMRKELAELESALQEQHEVnasLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQ- 738
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKEL---LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEt 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 739 --SVLQTELEKERESLRDalgKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNhlnhvvdglihpeevaaRVDE 816
Cdd:TIGR04523 469 qlKVLSRSINKIKQNLEQ---KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE-----------------KIEK 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 817 LRKRLKlgagemrihspsdVLGKSLADLQKQFSEILARSQWEKEEAQVRER-KLHEEMALQQEKLANGQEEFRQaceral 895
Cdd:TIGR04523 529 LESEKK-------------EKESKISDLEDELNKDDFELKKENLEKEIDEKnKEIEELKQTQKSLKKKQEEKQE------ 589
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 896 earikfdkrqhnaRIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKK 960
Cdd:TIGR04523 590 -------------LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1323-1805 |
3.61e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1323 NLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERhqqrkdfidghve 1402
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1403 nlmtELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENElactKEKTKSAVEKFTDAKRNLLQTESDAEA 1482
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1483 LEK-RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLtEELQSLQRD--IKA 1559
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI-EELKKAKGKcpVCG 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1560 AQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELgHRREELLLLQDSLAQAKADLQEALTLGETEVA 1639
Cdd:PRK03918 443 RELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1640 EKCSHIREVKSLLEELSFQKGELNVHISEK---KTQLALIQQEMEKEEKNLQVVLQQLS--------------------- 1695
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLeelKKKLAELEKKLDELEEELAELLKELEelgfesveeleerlkelepfy 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1696 RHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQrrELERQRQLLERDRRETERVR 1775
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSRELAGLR 679
|
490 500 510
....*....|....*....|....*....|
gi 1907139925 1776 AESQALQSCVECLSKEKEDLQGQCESWEKK 1805
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
276-1015 |
4.01e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 276 EKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCEELESDLSTKKELLKQKTVELTRACQKQYELEQE 355
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 356 LAFYKIDAKFeplnyypseyaeIDKYPDESPYIGKSRYKRNMFATETYIVSDAQAVQIRKMVPEGGQLRHEHTpprvqaP 435
Cdd:pfam02463 366 EKLEQLEEEL------------LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK------E 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 436 PDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALD 515
Cdd:pfam02463 428 ELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 516 LEIQMEKQRK------------------EIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEqqLDIMNRQYTQLES 577
Cdd:pfam02463 508 GLKVLLALIKdgvggriisahgrlgdlgVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTE--LPLGARKLRLLIP 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 578 RLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLE-GVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTE 656
Cdd:pfam02463 586 KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVvEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 657 VQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQL 736
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKI 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 737 EQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDN-SLLKKQLKEFQNHLNHVVDGLIHPEEVAARVD 815
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeEKLKAQEEELRALEEELKEEAELLEEEQLLIE 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 816 ELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQ--QEKLANGQEEFRQACER 893
Cdd:pfam02463 826 QEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDelESKEEKEKEEKKELEEE 905
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 894 ALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKRED--------AR 965
Cdd:pfam02463 906 SQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVnlmaieefEE 985
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1907139925 966 SQEQFLGLDEELKSLKkavAASDKLAAAELTIAKDQLKSLHGTVVRINQE 1015
Cdd:pfam02463 986 KEERYNKDELEKERLE---EEKKKLIRAIIEETCQRLKEFLELFVSINKG 1032
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1324-2042 |
4.48e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1324 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELeveelhRTIERHQQRKDFIDGHVEN 1403
Cdd:COG3096 356 LEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQT------RAIQYQQAVQALEKARALC 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1404 LMTELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTkEKTKSAVEKFT--DAKRNLLQTESDAE 1481
Cdd:COG3096 430 GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELV-CKIAGEVERSQawQTARELLRRYRSQQ 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1482 ALEKRAQETALNLVKAEQQLRLLQ-----------------ADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKE 1544
Cdd:COG3096 509 ALAQRLQQLRAQLAELEQRLRQQQnaerlleefcqrigqqlDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLE 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1545 KLTEELQSLqRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAK 1624
Cdd:COG3096 589 QLRARIKEL-AARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQPG 667
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1625 -ADLQEALTLGETEVAEKCSHIREVKSLLE--ELSFQKGELNVHI-----SEKKTQLA----------LIQQE------- 1679
Cdd:COG3096 668 gAEDPRLLALAERLGGVLLSEIYDDVTLEDapYFSALYGPARHAIvvpdlSAVKEQLAgledcpedlyLIEGDpdsfdds 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1680 -MEKEEKNLQVVLQ----QL--SRHKTE--LKNVADILQLETselqgLKLQHDQKVVELEKAQVDVLEEKLELENLQQ-- 1748
Cdd:COG3096 748 vFDAEELEDAVVVKlsdrQWrySRFPEVplFGRAAREKRLEE-----LRAERDELAEQYAKASFDVQKLQRLHQAFSQfv 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1749 -----------------ATQQQRRELERQrqlLERDRRETERVRAESQALQSCVECLSKekedLQGQCESWEKKsSHAQR 1811
Cdd:COG3096 823 gghlavafapdpeaelaALRQRRSELERE---LAQHRAQEQQLRQQLDQLKEQLQLLNK----LLPQANLLADE-TLADR 894
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1812 VLAATEESNKMEQS---------NLGKLELSVRKLR---QELEQLSQDKLALHSEVAEVQQQLQGKQEAINSL------- 1872
Cdd:COG3096 895 LEELREELDAAQEAqafiqqhgkALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRphfsyed 974
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1873 -QEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQem 1951
Cdd:COG3096 975 aVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAE-- 1052
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1952 mfqklQKEREREEqkfeagkvtleqqQRQLEKELTDQKSRLKQLLTdvsaaegrlgTLQEEERRIEGLERMLSQAKQQL- 2030
Cdd:COG3096 1053 -----AEERARIR-------------RDELHEELSQNRSRRSQLEK----------QLTRCEAEMDSLQKRLRKAERDYk 1104
|
810
....*....|..
gi 1907139925 2031 SEREQQLMAKSG 2042
Cdd:COG3096 1105 QEREQVVQAKAG 1116
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1584-2081 |
5.62e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 5.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1584 ELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKadlQEALTLGETEVAEKcshiREVKSLLEELSFQKGELN 1663
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILE---QQIKDLNDKLKKNK----DKINKLNSDLSKINSEIK 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1664 V---HISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEK 1740
Cdd:TIGR04523 114 NdkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1741 LELENLQQATQQQRRELERQRQLLerdrRETERVRAESQALQSCVECLSKEKEDLQGQCESWEK-----KSSHAQRVLAA 1815
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKNKSLE----SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTqlnqlKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1816 TEESNKMEQSN--LGKLELSVRKLRQELEQLSQDKLALHSEvaEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHT 1893
Cdd:TIGR04523 270 SEKQKELEQNNkkIKELEKQLNQLKSEISDLNNQKEQDWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1894 TKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEmmfqKLQKEREREEQKFEAGKVT 1973
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE----KLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1974 LEQQQRQLEKELTDQKSRLKQLLTDVSAaegrlgtlqeEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADD 2053
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSV----------KELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500
....*....|....*....|....*...
gi 1907139925 2054 MRADFSLLRNQflteRKKAEKQVAGLKE 2081
Cdd:TIGR04523 494 KEKELKKLNEE----KKELEEKVKDLTK 517
|
|
| Drf_FH1 |
pfam06346 |
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ... |
1239-1310 |
5.73e-07 |
|
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.
Pssm-ID: 461881 [Multi-domain] Cd Length: 157 Bit Score: 51.41 E-value: 5.73e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1239 PPfvPPPGYIMYTVLPDGSPVPQGVALYAPSPPLPNSSH----PLTPGTVVYGPPPAGaPIIYGPPPANFAVPLVP 1310
Cdd:pfam06346 82 PP--PPPLPGGAGIPPPPPPLPGGAGVPPPPPPLPGGPGipppPPFPGGPGIPPPPPG-MGMPPPPPFGFGVPAAP 154
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
442-784 |
6.43e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.96 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 442 DTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQqkkiseaekdlLLKQLsgrLQHLNRLRQEALDleiqme 521
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRL---LPRLNLLADETLA------ 893
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 522 kqrKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQK---RGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIK---- 594
Cdd:PRK04863 894 ---DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVsvlQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrrah 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 595 ----DLEQQLTDGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LQDEKETLLQRLTEVQQEKEE 663
Cdd:PRK04863 971 fsyeDAAEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQD 1045
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 664 LELIAmdAENMRKELA----ELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELE----------K 729
Cdd:PRK04863 1046 LGVPA--DSGAEERARarrdELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVnakagwcavlR 1123
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 730 LLRRTQLEQSVLQTEL-EKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNS 784
Cdd:PRK04863 1124 LVKDNGVERRLHRRELaYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPK 1179
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1095 |
6.66e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 6.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 270 EEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCEELE-----------------SDLSTKK 332
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELeeeyllyldylklneerIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 333 ELLKQKTVELTRACQK--QYELEQELAFYKIDAKFEPLNYYPSEYAEIDKYPDESPYIgKSRYKRNMFATETYIVSDAQA 410
Cdd:pfam02463 246 LRDEQEEIESSKQEIEkeEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL-KLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 411 VQIRKMVPEGGQLRHEHTPPRVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEA 490
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 491 EKDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNR 570
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 571 QYTQLESRLDE----ILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQA--TQAQNECRKLQ 644
Cdd:pfam02463 485 QLELLLSRQKLeersQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVevSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 645 DEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLK 724
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 725 QELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGL 804
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 805 IHPEEVAARVDELRKRLKLGAGEMrihspSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQ 884
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEE-----EEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQ 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 885 EEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQgltdlQLQEADEEKERILAQLQELEKKKKREDA 964
Cdd:pfam02463 800 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQ-----KLEKLAEEELERLEEEITKEELLQELLL 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 965 RSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEI 1044
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENN 954
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1045 ELLQHLLREREGQFRDEMENADLGAKgANSQLLEIEALNEAMAKQRAEITR 1095
Cdd:pfam02463 955 KEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEK 1004
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1747-2077 |
7.10e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1747 QQATQQQRRELERQRQLlerdrRETERVRaesqalqscveclskekedlqgQCESWEKKSSHAQRVLAATEESNKMEqsn 1826
Cdd:pfam17380 302 RQEKEEKAREVERRRKL-----EEAEKAR----------------------QAEMDRQAAIYAEQERMAMERERELE--- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1827 lgKLELSVRKlrQELEQLSQDKLALH-SEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQT 1905
Cdd:pfam17380 352 --RIRQEERK--RELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1906 QLQEDISKWMARLEScQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtlEQQQRQLEKEL 1985
Cdd:pfam17380 428 EQEEARQREVRRLEE-ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-----EQRRKILEKEL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1986 TDQKSRL-----KQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGEllalQKEADDMRADFSL 2060
Cdd:pfam17380 502 EERKQAMieeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE----RSRLEAMEREREM 577
|
330
....*....|....*..
gi 1907139925 2061 LRNQFLTERKKAEKQVA 2077
Cdd:pfam17380 578 MRQIVESEKARAEYEAT 594
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
480-865 |
9.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 9.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 480 EAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALD-LEIQMEKQRKEIAEKHEEINTvqlatdsldpkdpkhshMKAQK 558
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERyQALLKEKREYEGYELLKEKEA-----------------LERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 559 RGKEQQLDIMNRQYTQLESRLDEIlcriAKETEEIKDLEQQLtdgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQaqn 638
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISEL----EKRLEEIEQLLEEL-------NKKIKDLGEEEQLRVKEKIGELEAEIAS--- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 639 eCRKLQDEKETLLQRLTEVQQEKEEleliamDAENMRKELAELESALQEQHEVNASLQqaqgdlsayeteletqlklkdA 718
Cdd:TIGR02169 306 -LERSIAEKERELEDAEERLAKLEA------EIDKLLAEIEELEREIEEERKRRDKLT---------------------E 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 719 ETSQLKQELEKLLRRTQleqsvlqtELEKERESLRDALGKAQSSEEK-QQENNELRTQLKQLQDDNSLLKKQLKEFQNHL 797
Cdd:TIGR02169 358 EYAELKEELEDLRAELE--------EVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 798 NHVVDGLihpEEVAARVDELRKRLKlgAGEMRIHSPSDVLGK----------SLADLQKQFSEilARSQWEKEEAQVR 865
Cdd:TIGR02169 430 AGIEAKI---NELEEEKEDKALEIK--KQEWKLEQLAADLSKyeqelydlkeEYDRVEKELSK--LQRELAEAEAQAR 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1441-1655 |
1.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1441 ADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEE 1520
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1521 ILKEINKVVAAK-DADFQCLNEKKEKLTEELQSLQRDIKAAQHSEdHHLQVLRESETLLQAKRAELETLKSQVTSQQQEL 1599
Cdd:COG4942 98 ELEAQKEELAELlRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1600 AVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEEL 1655
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1411-2092 |
1.08e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1411 EKSLKHHEDiVDEIECLEKTLLKRRSElrEADRLLAEAENELACTKEKTKSAVE--KFTDAKRnllqTESDAEALEKRaq 1488
Cdd:PTZ00121 1118 EEAKKKAED-ARKAEEARKAEDARKAE--EARKAEDAKRVEIARKAEDARKAEEarKAEDAKK----AEAARKAEEVR-- 1188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1489 eTALNLVKAEQQLRLLQA-DAEDL----EQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSL---------- 1553
Cdd:PTZ00121 1189 -KAEELRKAEDARKAEAArKAEEErkaeEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFeearmahfar 1267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1554 -QRDIKAAQHSEDHHLQVLRESETLLQAKRAElETLKSQVTSQQQELAVLDSELGHRREEllllqdslAQAKADLQEalt 1632
Cdd:PTZ00121 1268 rQAAIKAEEARKADELKKAEEKKKADEAKKAE-EKKKADEAKKKAEEAKKADEAKKKAEE--------AKKKADAAK--- 1335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1633 lgetEVAEKCSHIREVKSLLEELSFQKGELnvhiSEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLET 1712
Cdd:PTZ00121 1336 ----KKAEEAKKAAEAAKAEAEAAADEAEA----AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1713 SELQGlKLQHDQKVVELEKAQVDVLEEKLELENLQQA--TQQQRRELERQRQLLERDRRETERVRAEsQALQSCVEclSK 1790
Cdd:PTZ00121 1408 DELKK-AAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEE--AK 1483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1791 EKEDLQGQCESWEKKSSHAQRvlaATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVA---EVQQQLQGKQE 1867
Cdd:PTZ00121 1484 KADEAKKKAEEAKKKADEAKK---AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1868 AINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLD 1947
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1948 QQEMMFQKLQKEREREEQKfeagKVTLEQQQRQLEKElTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAK 2027
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEEN----KIKAAEEAKKAEED-KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 2028 QQLSEREQQLMAKSGELLALQKEADDmradfsllrnqfltERKKAEKQVAGLKEALKIQRSQLEK 2092
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEE--------------DKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1528-1773 |
1.20e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1528 VVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELG 1607
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1608 HRREELLLLQDSLAQAKADLQealtlgetevaeKCSHIREVKSLLEELSFQKGELNVHIsekktqLALIQQEMEKEEKNL 1687
Cdd:COG4942 94 ELRAELEAQKEELAELLRALY------------RLGRQPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1688 QVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERD 1767
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*.
gi 1907139925 1768 RRETER 1773
Cdd:COG4942 236 AAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1460-2091 |
1.22e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1460 KSAVEKFTDAKRNLLqTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVvaakdadfqcL 1539
Cdd:PRK02224 175 RLGVERVLSDQRGSL-DQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV----------L 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1540 NEKKEKLtEELQSLQRDIkaaqhsedhhlqvlRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLlQDS 1619
Cdd:PRK02224 244 EEHEERR-EELETLEAEI--------------EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL-DDA 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1620 LAQAKADLQEALTLGETEVAEKcshIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKT 1699
Cdd:PRK02224 308 DAEAVEARREELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1700 ELKnvadilQLEtSELQGLKLQHDQKVVELEKAQvdvlEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQ 1779
Cdd:PRK02224 385 EIE------ELE-EEIEELRERFGDAPVDLGNAE----DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGK 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1780 alqsCVECLS--KEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQsNLGKLElSVRKLRQELEQLSQDKLALHSEVAE 1857
Cdd:PRK02224 454 ----CPECGQpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAE-DLVEAEDRIERLEERREDLEELIAE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1858 VQQQLQGKQEAINSLQEELDstqdhldlakqdlihttkcqnELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQD 1937
Cdd:PRK02224 528 RRETIEEKRERAEELRERAA---------------------ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1938 EI-RESKLR--LDQQEMMFQKLQKEREREEQKFEagkvtLEQQQRQLEKELTDQKSRLKQLLtdvsaaegrlgtlqeEER 2014
Cdd:PRK02224 587 RIeSLERIRtlLAAIADAEDEIERLREKREALAE-----LNDERRERLAEKRERKRELEAEF---------------DEA 646
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 2015 RIEglermlsQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQF--LTERKKAEKQVAGLKEALKIQRSQLE 2091
Cdd:PRK02224 647 RIE-------EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELeeLEELRERREALENRVEALEALYDEAE 718
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
462-1095 |
1.23e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 462 ETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRL----QHLNRLRQEALDLEIQMEKQRKEIAEKHEeintv 537
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELeevlREINEISSELPELREELEKLEKEVKELEE----- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 538 qlatdsldpkdpkhshMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQqltdgQIAANEALKKDLEG 617
Cdd:PRK03918 236 ----------------LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE-----KVKELKELKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 618 VISgLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQ 697
Cdd:PRK03918 295 YIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 698 AQG---DLSAYETE-LETQLKLKDAETSQLKQELEKLLRRtqleqsvlQTELEKERESLRDALGKAQSSEEKQQENNELR 773
Cdd:PRK03918 374 LERlkkRLTGLTPEkLEKELEELEKAKEEIEEEISKITAR--------IGELKKEIKELKKAIEELKKAKGKCPVCGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 774 TQlkqlQDDNSLLKKQLKEFQNHLNHVvdglihpEEVAARVDELRKRLKLGAGEMRIHSPSDVLgKSLADLQKQFSEILA 853
Cdd:PRK03918 446 TE----EHRKELLEEYTAELKRIEKEL-------KEIEEKERKLRKELRELEKVLKKESELIKL-KELAEQLKELEEKLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 854 RSQWEKEEAQVRE-RKLHEEMALQQEKLANGQEEFRQACEralearikfdkrqHNARIQQLENEIHYLQENLKSMEKIqg 932
Cdd:PRK03918 514 KYNLEELEKKAEEyEKLKEKLIKLKGEIKSLKKELEKLEE-------------LKKKLAELEKKLDELEEELAELLKE-- 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 933 LTDLQLQEADEEKERIlaqlQELEKKKKR----EDARSQeqflgLDEELKSLKKAVAASDKlAAAELTIAKDQLKSLHGT 1008
Cdd:PRK03918 579 LEELGFESVEELEERL----KELEPFYNEylelKDAEKE-----LEREEKELKKLEEELDK-AFEELAETEKRLEELRKE 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1009 VVRINQERAEElqEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRD------EMENADLGAKGANSQLLEIEAL 1082
Cdd:PRK03918 649 LEELEKKYSEE--EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKlkeeleEREKAKKELEKLEKALERVEEL 726
|
650
....*....|...
gi 1907139925 1083 NEAMAKQRAEITR 1095
Cdd:PRK03918 727 REKVKKYKALLKE 739
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
435-965 |
1.34e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 435 PPDLQLEDT----EKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEaiQQKKISEAEKDLLLKQlsgrlqhlnrlr 510
Cdd:TIGR00606 570 PNKKQLEDWlhskSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE--QLSSYEDKLFDVCGSQ------------ 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 511 qealDLEIQMEKQRKEIAEKHEEINTVQLATDSldpkdpkHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKET 590
Cdd:TIGR00606 636 ----DEESDLERLKEEIEKSSKQRAMLAGATAV-------YSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKL 704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDlEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTE-------VQQEKEE 663
Cdd:TIGR00606 705 RLAPD-KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEqetllgtIMPEEES 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 664 LELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET-SQLKQELEKLLRRTQLEQSVLQ 742
Cdd:TIGR00606 784 AKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTvVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 743 T---ELEKERESLRDALGKAQS----SEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPEEVAA-RV 814
Cdd:TIGR00606 864 SktnELKSEKLQIGTNLQRRQQfeeqLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 815 DELRKRLKLGAGEMRihSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFR----QA 890
Cdd:TIGR00606 944 NDIKEKVKNIHGYMK--DIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERwlqdNL 1021
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 891 CERALEARIK--------FDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKRE 962
Cdd:TIGR00606 1022 TLRKRENELKeveeelkqHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEE 1101
|
...
gi 1907139925 963 DAR 965
Cdd:TIGR00606 1102 KYR 1104
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-227 |
1.66e-06 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 47.13 E-value: 1.66e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 170 NLQKLNLAGNEIEHI-PVWFaKKLKSLRVLNLKGNKISSLQDVSklkpLQDLTSLVLID 227
Cdd:pfam13855 2 NLRSLDLSNNRLTSLdDGAF-KGLSNLKVLDLSNNLLTTLSPGA----FSGLPSLRYLD 55
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1328-2084 |
1.71e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.51 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1328 VSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIErhQQRKDFIDGHvenlmtE 1407
Cdd:TIGR00606 240 VKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTD--EQLNDLYHNH------Q 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1408 LEIEKSLKHHEDIVDEIECLEKtllkrrsELREADRLLAEAENELACTKEKTKSAVEKFT--DAKRNLLQTESDAEALEK 1485
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNK-------ERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQSLATRLELDGFER 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1486 RA----QETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ 1561
Cdd:TIGR00606 385 GPfserQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 HSEDHHLQVLRESETLLQAKR--------AELETLKSQVTSQQQELAVLDSEL---GHRREELLLLQDSLAQAKADLQEA 1630
Cdd:TIGR00606 465 QLEGSSDRILELDQELRKAERelskaeknSLTETLKKEVKSLQNEKADLDRKLrklDQEMEQLNHHTTTRTQMEMLTKDK 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1631 LTLGETEVAEKCSHIREVKSLLEELSFQKgelnvHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNvadilQL 1710
Cdd:TIGR00606 545 MDKDEQIRKIKSRHSDELTSLLGYFPNKK-----QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINN-----EL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1711 ETSELQGLKLQhdQKVVELekaqvdvleeklelenlqQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSK 1790
Cdd:TIGR00606 615 ESKEEQLSSYE--DKLFDV------------------CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1791 EKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSqdklalhSEVAEVQQQLQGKQEAIN 1870
Cdd:TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML-------GLAPGRQSIIDLKEKEIP 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1871 SLQEELDSTQDHLDLAKQDLIHTTKcQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQE 1950
Cdd:TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQET-LLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1951 MMFQKLQKEREREE--QKFEAGKVTLEQQQRQ---LEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQ 2025
Cdd:TIGR00606 827 VNQEKQEKQHELDTvvSKIELNRKLIQDQQEQiqhLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 2026 AKQQLSEREQQLmaksgellalqkeaDDMRADFSLLRNQFLTERKKAEKQVAGLKEALK 2084
Cdd:TIGR00606 907 AKEQDSPLETFL--------------EKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1806-2036 |
1.78e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1806 SSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDL 1885
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1886 AKQDLIHTTKCQNELlnEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIREsklrldqqemmFQKLQKEREREEQ 1965
Cdd:COG3883 91 RARALYRSGGSVSYL--DVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAE-----------LEAKKAELEAKLA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1966 KFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQ 2036
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1830-2057 |
1.90e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.10 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1830 LELSVRKLRQELEQLSQdklALHSEVAEVQQQLQGKQEAINSLQEELDStqdhLDLAKQDLIHTTKcQNELLNEQTQLQE 1909
Cdd:COG3206 162 LEQNLELRREEARKALE---FLEEQLPELRKELEEAEAALEEFRQKNGL----VDLSEEAKLLLQQ-LSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1910 DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEmmfqkLQKEREREEQKFEAGK---VTLEQQQRQLEKELT 1986
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAE-----LEAELAELSARYTPNHpdvIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 1987 DQKSR-LKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAD 2057
Cdd:COG3206 309 QEAQRiLASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1504-1884 |
1.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1504 LQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEelqsLQRDIKAAQHSEDHHLQVLRESETLLQAKRA 1583
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1584 ELETLKSqvtsqqqELAVLDSELGHRREELLLLQDSLAQAKADLqealtlGETEVAEKCSHIREVKSLLEELSFQKGELN 1663
Cdd:TIGR02169 752 EIENVKS-------ELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1664 VHISEkktqLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKaqvdvleeklel 1743
Cdd:TIGR02169 819 QKLNR----LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES------------ 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1744 enlqqatqqQRRELERQRQLLERDRRETERvraESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKME 1823
Cdd:TIGR02169 883 ---------RLGDLKKERDELEAQLRELER---KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1824 QSnLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLD 1884
Cdd:TIGR02169 951 LS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1446-1640 |
1.96e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1446 AEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKE- 1524
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1525 -------------INKVVAAKD-ADF-------QCLNEKKEKLTEELQSLQRDIKAAQHSedhhlqvLRESETLLQAKRA 1583
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1584 ELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
439-692 |
2.23e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQkkiSEAEKDLLLKQLSGRLQHLNRLRQEALDLEI 518
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ---LKEELKALREALDELRAELTLLNEEAANLRE 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 519 QMEKQRKEIAEKHEEINTVQlatdsldpkdpkhshmkAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQ 598
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLE-----------------EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 599 QLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEEL-----ELIAMDA 671
Cdd:TIGR02168 888 ALALLRSELEELSEElrELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEaealeNKIEDDE 967
|
250 260
....*....|....*....|.
gi 1907139925 672 ENMRKELAELESALQEQHEVN 692
Cdd:TIGR02168 968 EEARRRLKRLENKIKELGPVN 988
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1831-2052 |
2.38e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1831 ELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLihttkcqNELLNEQTQLQED 1910
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-------AEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1911 ISKWMARLESCQKETETKEQ--QVQQLQDEIRESKLR---LDQQEMMFQKLQKEREREEQKfeagKVTLEQQQRQLEKEL 1985
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVllGSESFSDFLDRLSALskiADADADLLEELKADKAELEAK----KAELEAKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1986 TDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEAD 2052
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
248-970 |
2.38e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 248 ESLEGQPVTTQDRQEAFERFSLEEIERLEKDLEKKTVETEELKNKQ--TKFLEEIKNQDKLNKSLKEEAMLQKQSCEELE 325
Cdd:TIGR00618 167 ELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCmpDTYHERKQVLEKELKHLREALQQTQQSHAYLT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 326 SDLSTKKELLK--QKTVELTRACQKQYELEQELAFYK----IDAKFEPLNYYPSEYAEIDKYPDESPYIGKSRYKRNMFA 399
Cdd:TIGR00618 247 QKREAQEEQLKkqQLLKQLRARIEELRAQEAVLEETQerinRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 400 TETYIVSDAQAVQIRKMVPEGGQLRHEHTPPRVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQL- 478
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILq 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 479 EEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALdLEIQMEKQRKEIAEKHEEINTVQLATDSLdpkdpkhshmKAQK 558
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL-CAAAITCTAQCEKLEKIHLQESAQSLKER----------EQQL 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 559 RGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTD-GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 637
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSER 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 638 NECRKLQDEKETLLQRLTEVQQEKEELEliaMDAENMRKELAELESALQEQHEVNASLQQAQgdlsaYETELETQLKLKD 717
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSK---EDIPNLQNITVRLQDLTEKLSEAEDMLACEQ-----HALLRKLQPEQDL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 718 AETSQLKQELEKLLRRTQLEQSVLQTELEKERE---SLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQ 794
Cdd:TIGR00618 628 QDVRLHLQQCSQELALKLTALHALQLTLTQERVrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 795 NHLNHVVDGLIHPEEVAarvdelrkrLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSqwEKEEAQVRERKLHEEMA 874
Cdd:TIGR00618 708 ELETHIEEYDREFNEIE---------NASSSLGSDLAAREDALNQSLKELMHQARTVLKAR--TEAHFNNNEEVTAALQT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 875 LQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQqleneiHYLQENLKSMEKIQG---LTDLQLQEADEEKERILAQ 951
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP------SDEDILNLQCETLVQeeeQFLSRLEEKSATLGEITHQ 850
|
730
....*....|....*....
gi 1907139925 952 LQELEKKKKREDARSQEQF 970
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQA 869
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1406-1703 |
2.57e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1406 TELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEK 1485
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1486 RAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSed 1565
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN-- 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1566 hhlqvLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELghrrEELLLLQDSLaqakadlqealtlgETEVAEKCSHI 1645
Cdd:TIGR04523 484 -----LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI----SSLKEKIEKL--------------ESEKKEKESKI 540
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 1646 REVKSLLEELSFQKGELNV-----HISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKN 1703
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENLekeidEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1433-2027 |
2.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1433 KRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKR-NLLQTESDAEALEKRAQEtalNLVKAEQQLRllqADAEDL 1511
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMaHFARRQAAIKAEEARKAD---ELKKAEEKKK---ADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1512 EQHKIKQEEILKEINKVVAAKDADFQCLNEKK--EKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQA--KRAELET 1587
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaeKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1588 LKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETevAEKCSHIREVKSLLEELSfQKGELNVHIS 1667
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAEEAK-KADEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1668 EKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGlKLQHDQKVVELEKAQvDVLEEKLELENLQ 1747
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK-AAEAKKKADEAKKAE-EAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1748 QATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNL 1827
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1828 GKlelsvrklrQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQL 1907
Cdd:PTZ00121 1613 KK---------AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1908 QEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER-EREEQKFEAGKVTLEQQQRQLEKELT 1986
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907139925 1987 DQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAK 2027
Cdd:PTZ00121 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1812-2094 |
2.77e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1812 VLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLI 1891
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1892 HTTKCQNELLNEQTQL-QEDISKWMARLEScqkETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAG 1970
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLnNQKEQDWNKELKS---ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1971 KVTLEQQQRQLEKELTDQKSRLKQLltdvsaaegrlgtlQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKE 2050
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEI--------------KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907139925 2051 ADDMRADFSLLRNQFlterKKAEKQVAGLK---EALKIQRSQLEKNL 2094
Cdd:TIGR04523 428 IERLKETIIKNNSEI----KDLTNQDSVKEliiKNLDNTRESLETQL 470
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1832-2048 |
2.91e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.75 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1832 LSVRKLRQELEQLSQDKLALHSEVAEVqqqLQGKQEAINSLQEELDSTQDHldlakQDLIH-----TTKCQNELLNEqTQ 1906
Cdd:PRK10929 23 PDEKQITQELEQAKAAKTPAQAEIVEA---LQSALNWLEERKGSLERAKQY-----QQVIDnfpklSAELRQQLNNE-RD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1907 LQEDISKWMARLESCQKETETKEQ------QVQQLQDEIRE---SKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQ 1977
Cdd:PRK10929 94 EPRSVPPNMSTDALEQEILQVSSQlleksrQAQQEQDRAREisdSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQA 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1978 QR-QLEKELTDQKSRLKQL-LTDVSAAEGR-LGTLQEE--ERRIEGLERMLSQAKQQLSEREQQ---LMAKSGELLALQ 2048
Cdd:PRK10929 174 QLtALQAESAALKALVDELeLAQLSANNRQeLARLRSElaKKRSQQLDAYLQALRNQLNSQRQReaeRALESTELLAEQ 252
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
466-958 |
3.24e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 466 QKVLRATQEFKQLEEAIQQKKISEAEkdlllkqlsgrlqhLNRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLD 545
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEE--------------YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 546 PkdpkhshmKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIaketEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQey 625
Cdd:COG4717 130 L--------YQELEALEAELAELPERLEELEERLEELRELE----EELEELEAELAELQEELEELLEQLSLATEEELQ-- 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 626 lgtikgqatQAQNECRKLQDEKETLLQRLTEVQQEKEELEliamdaenmrKELAELESALQEQHEVNaSLQQAQGDLSAy 705
Cdd:COG4717 196 ---------DLAEELEELQQRLAELEEELEEAQEELEELE----------EELEQLENELEAAALEE-RLKEARLLLLI- 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 706 ETELETQLKLKDAETSQLKQELEKLLRRTQLeQSVLQTELEKERESLRDALGKAQSSEEKQQ-ENNELRTQLKQLQDDNS 784
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIAGVLFLVLGL-LALLFLLLAREKASLGKEAEELQALPALEElEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 785 LLKKQLKEFQNHLNHVVdglihpeEVAARVDELRKRLKlgagemrihspsdvlgksLADLQKQFSEILARSQWEKEEAQV 864
Cdd:COG4717 334 LSPEELLELLDRIEELQ-------ELLREAEELEEELQ------------------LEELEQEIAALLAEAGVEDEEELR 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 865 RERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSM-EKIQGL--------TD 935
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELrEELAELeaeleqleED 468
|
490 500
....*....|....*....|...
gi 1907139925 936 LQLQEADEEKERILAQLQELEKK 958
Cdd:COG4717 469 GELAELLQELEELKAELRELAEE 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
256-704 |
3.35e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 256 TTQDRQEAFErfslEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAmlqkqscEELESDLSTKKELL 335
Cdd:PRK02224 311 AVEARREELE----DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-------AELESELEEAREAV 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 336 KQKTVELTracqkqyELEQEL-----AFYKIDAKFEPLNYYPSEYAEidkypDESPYIGKSRYKRNMFATETYIVSDAQA 410
Cdd:PRK02224 380 EDRREEIE-------ELEEEIeelreRFGDAPVDLGNAEDFLEELRE-----ERDELREREAELEATLRTARERVEEAEA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 411 VQIRKMVPEGGQlrhehtpPRVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQ---EFKQLEEAIQQKKI 487
Cdd:PRK02224 448 LLEAGKCPECGQ-------PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlveAEDRIERLEERRED 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 488 SEAEKDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDP----------KHSHMKAQ 557
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAelkeriesleRIRTLLAA 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 558 KRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLgtikgqatqaq 637
Cdd:PRK02224 601 IADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKL----------- 669
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 638 necRKLQDEKETLLQRLTEVQQEKEELEliamDAENMRKELAELESALQEQHEVNASLQQAQGDLSA 704
Cdd:PRK02224 670 ---DELREERDDLQAEIGAVENELEELE----ELRERREALENRVEALEALYDEAEELESMYGDLRA 729
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
639-1130 |
3.40e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 52.45 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 639 ECRKLQDE----KETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQgdlsayETELETQLK 714
Cdd:pfam07111 74 ELRRLEEEvrllRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGS------QRELEEIQR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 715 LKDAETSQLKQELEKLL-----RRTQLEQSVLQTELEKEreslrdalGKAQSSEEKQQENNELRTQLKQLQDDnslLKKQ 789
Cdd:pfam07111 148 LHQEQLSSLTQAHEEALssltsKAEGLEKSLNSLETKRA--------GEAKQLAEAQKEAELLRKQLSKTQEE---LEAQ 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 790 LKEFQNHLNHVVDGLihPEEVAARVDELRKrlklgagemrihspsdvlgKSLADLQKQFSEILARSQWEKEEAQVRERKL 869
Cdd:pfam07111 217 VTLVESLRKYVGEQV--PPEVHSQTWELER-------------------QELLDTMQHLQEDRADLQATVELLQVRVQSL 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 870 HEEMALQQEKLANG-------QEEFRQACER----------ALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQG 932
Cdd:pfam07111 276 THMLALQEEELTRKiqpsdslEPEFPKKCRSllnrwrekvfALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQA 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 933 LTDLQLQE--ADEEKERILAQLQELEKKKKREDARSQEQFLG-LDEELKSLKKAVAASD----------KLAAAELTIAK 999
Cdd:pfam07111 356 ILQRALQDkaAEVEVERMSAKGLQMELSRAQEARRRQQQQTAsAEEQLKFVVNAMSSTQiwlettmtrvEQAVARIPSLS 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1000 DQL----------KSLHGTVVRINQERAEELQEAER-------FSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEM 1062
Cdd:pfam07111 436 NRLsyavrkvhtiKGLMARKVALAQLRQESCPPPPPappvdadLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQG 515
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1063 EnadlgakgansqlLEIEALNEAMAKQRAEITRLRDVLNLTG---AGTKGGIENVLEEIAELRHAVSAQNE 1130
Cdd:pfam07111 516 E-------------AERQQLSEVAQQLEQELQRAQESLASVGqqlEVARQGQQESTEEAASLRQELTQQQE 573
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-730 |
3.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 437 DLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFK-----------QLEEAIQQKKISEAEkdlllkqlsgrlqh 505
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTeleaeieeleeRLEEAEEELAEAEAE-------------- 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 506 LNRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKdpkhshmkaqKRGKEQQLDIMNRQYTQLESRLDEILCR 585
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER----------LESLERRIAATERRLEDLEEQIEELSED 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 586 IAKETEEIKDLEQQLTDGQIAANEALKKdlegvISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELE 665
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 666 LiamDAENMRKELAELESALQEQHEVNAslqqaqGDLSAYETELETQLKLKDAETSQLKQELEKL 730
Cdd:TIGR02168 929 L---RLEGLEVRIDNLQERLSEEYSLTL------EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Drf_FH1 |
pfam06346 |
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs) ... |
1239-1301 |
3.76e-06 |
|
Formin Homology Region 1; This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues.
Pssm-ID: 461881 [Multi-domain] Cd Length: 157 Bit Score: 48.71 E-value: 3.76e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1239 PPFVPPPGYIMYTVLPDGSPVPqgvalyaPSPPLPNSSH----PLTPGTVVYGPPPA--GAPIIYGPPP 1301
Cdd:pfam06346 1 PPPPPLPGDSSTIPLPPGACIP-------TPPPLPGGGGppppPPLPGSAAIPPPPPlpGGTSIPPPPP 62
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
562-769 |
4.34e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 562 EQQLDIMNRQYTQLESRLDEILCR--IAKETEEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 637
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 638 NecrklQDEKETLLQRLTEVQQEKEELELIAMDA----ENMRKELAELESALQEqhEVNASLQQAQGDLSAYETELETQL 713
Cdd:COG3206 261 Q-----SPVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLQQ--EAQRILASLEAELEALQAREASLQ 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 714 KLKDAETSQLKQeleklLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQEN 769
Cdd:COG3206 334 AQLAQLEARLAE-----LPELEAELRRLEREVEVARELYESLLQRLEEARLAEALT 384
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
591-1061 |
4.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQLtdGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKEtLLQRLTEVQQEKEELELIAmd 670
Cdd:COG4717 71 KELKELEEEL--KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELP-- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 671 aenmrKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETsqlKQELEKLLRRTQleqsvlqtELEKERE 750
Cdd:COG4717 146 -----ERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELE--------ELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 751 SLRDALgkaqssEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHpeEVAARVDELRKRLKLGAGemri 830
Cdd:COG4717 210 ELEEEL------EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALL--ALLGLGGSLLSLILTIAG---- 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 831 hspsdvLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRqaCERALEARIKFDKRQHNARI 910
Cdd:COG4717 278 ------VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 911 QQLENEIHYLQENLK---SMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREdARSQEQFLGLDEELKSL-----KK 982
Cdd:COG4717 350 QELLREAEELEEELQleeLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEEL-EELEEQLEELLGELEELlealdEE 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 983 AVAASDKLAAAELTIAKDQLKSLHGTVVRINQ-----ERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQ 1057
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
....
gi 1907139925 1058 FRDE 1061
Cdd:COG4717 509 YREE 512
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1659-2073 |
4.61e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 4.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1659 KGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKtELKNVADILQLEtseLQGLKLQHDQKVVELEKAQVDVLE 1738
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKK-SLHGKAELLTLR---SQLLTLCTPCMPDTYHERKQVLEK 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1739 EKLELENLQQATQQQRRELERQRQLLE---RDRRETERVRAESQALQSCVECLSKEKEDLQGQCEsWEKKSSHAQRVlaa 1815
Cdd:TIGR00618 227 ELKHLREALQQTQQSHAYLTQKREAQEeqlKKQQLLKQLRARIEELRAQEAVLEETQERINRARK-AAPLAAHIKAV--- 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1816 tEESNKMEQSNLGKLELSVRKLRQELEQlSQDKLALHSEVAEVQQQLQGKQEAINSLQEELD---STQDHLDLAKQDL-- 1890
Cdd:TIGR00618 303 -TQIEQQAQRIHTELQSKMRSRAKLLMK-RAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvatSIREISCQQHTLTqh 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1891 IHTTKCQNELLNEQTQLQEDISKWMARlESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFE-A 1969
Cdd:TIGR00618 381 IHTLQQQKTTLTQKLQSLCKELDILQR-EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEkI 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1970 GKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSERE---QQLMAKSGELLA 2046
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpltRRMQRGEQTYAQ 539
|
410 420
....*....|....*....|....*..
gi 1907139925 2047 LQKEADDMRADFSLLRNQFLTERKKAE 2073
Cdd:TIGR00618 540 LETSEEDVYHQLTSERKQRASLKEQMQ 566
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
540-775 |
4.73e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 540 ATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQiAANEALKKDLEGVI 619
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 620 SGLQE------YLGTIKGQATQAQ--NECRKLQDEKETLLQRLTEVQQEKEELELIAMDAEnmrKELAELESALQEQHEV 691
Cdd:COG3883 93 RALYRsggsvsYLDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELE---AKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 692 NASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNE 771
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGA 249
|
....
gi 1907139925 772 LRTQ 775
Cdd:COG3883 250 GAAG 253
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
6.07e-06 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 44.93 E-value: 6.07e-06
10 20 30
....*....|....*....|....*....|..
gi 1907139925 148 RLRELNLSYNKISKIEGLENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
85-235 |
7.79e-06 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 50.56 E-value: 7.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 85 EALIKKLTKQDNlalVKSLNLSLSKDGGKKFRYI-ENLEKCVKLEVLNLSYNLI------VKIEKVDKLLRLRELNLSYN 157
Cdd:COG5238 254 IALAEALKNNTT---VETLYLSGNQIGAEGAIALaKALQGNTTLTSLDLSVNRIgdegaiALAEGLQGNKTLHTLNLAYN 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 158 KISK------IEGLENMCNLQKLNLAGNEI-EHIPVWFAKKLK---SLRVLNLKGNKISSLQDVSKLKPLQ--DLTSLVL 225
Cdd:COG5238 331 GIGAqgaialAKALQENTTLHSLDLSDNQIgDEGAIALAKYLEgntTLRELNLGKNNIGKQGAEALIDALQtnRLHTLIL 410
|
170
....*....|
gi 1907139925 226 IDNPVVALPH 235
Cdd:COG5238 411 DGNLIGAEAQ 420
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
245-960 |
9.17e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 9.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 245 RSLESLEGQpvttQDRQEAFERFSLEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLN-------KSLKEEAMLQ 317
Cdd:TIGR02169 294 EKIGELEAE----IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklteeyAELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 318 KQSCEELESDLSTKKELLKQKTVELTRACQKQYELEQELafykiDAKFEPLNYYPSEYAEIDKypdespYIGKSRYKRNM 397
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL-----DRLQEELQRLSEELADLNA------AIAGIEAKINE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 398 FATETyivsDAQAVQIRKMVPEGGQLRHehtpprvqappdlQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQ 477
Cdd:TIGR02169 439 LEEEK----EDKALEIKKQEWKLEQLAA-------------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 478 LEEAIQQKKISEAEKDL-------LLKQL---------------SGRLQH----------------------------LN 507
Cdd:TIGR02169 502 SEERVRGGRAVEEVLKAsiqgvhgTVAQLgsvgeryataievaaGNRLNNvvveddavakeaiellkrrkagratflpLN 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 508 RLRQEALDLEIQMEK------------------------------QRKEIAEKHE-EINTVQLATDSLDP---------K 547
Cdd:TIGR02169 582 KMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMgKYRMVTLEGELFEKsgamtggsrA 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 548 DPKHSHMKAQKRGKEQQL----DIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanEALKKDLEgvisGLQ 623
Cdd:TIGR02169 662 PRGGILFSRSEPAELQRLrerlEGLKRELSSLQSELRRIENRLDELSQELSDASRKI--------GEIEKEIE----QLE 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 624 EYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELiamDAENMRKELAELESALQEQhevnaSLQQAQGDLS 703
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE---DLHKLEEALNDLEARLSHS-----RIPEIQAELS 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 704 ayetELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKER--ESLRDALGKAQSS-----EEKQQENNELRTQL 776
Cdd:TIGR02169 802 ----KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIdlKEQIKSIEKEIENlngkkEELEEELEELEAAL 877
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 777 KQLQDDNSLLKKQLKEFQNHLNHVVDGLihpEEVAARVDELRKRLKlgagemrihspsdVLGKSLADLQKQFSEILARSQ 856
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKI---EELEAQIEKKRKRLS-------------ELKAKLEALEEELSEIEDPKG 941
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 857 WEKEEAQvrerklhEEMALQQEKlangqeEFRQACERALEARikfdKRQHNARIQQLENEIHYLQENLKSMEKIQgltdl 936
Cdd:TIGR02169 942 EDEEIPE-------EELSLEDVQ------AELQRVEEEIRAL----EPVNMLAIQEYEEVLKRLDELKEKRAKLE----- 999
|
810 820
....*....|....*....|....
gi 1907139925 937 qlqeadEEKERILAQLQELEKKKK 960
Cdd:TIGR02169 1000 ------EERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1509-1844 |
9.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 9.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1509 EDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETL 1588
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1589 KSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEaltlgetevaekcshireVKSLLEELSFQKGELNVHISE 1668
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA------------------LREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1669 KKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVAdiLQLETSELQGLKLQHDQKVVELEKAQvdvleeklelenlqq 1748
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLNERAS--------------- 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1749 atqqQRRELERQR---QLLERDRRETE-RVRAESQALQSCVECLSKEKEDLQG----QCESWEKKSSHAQRVLAATEESN 1820
Cdd:TIGR02168 885 ----LEEALALLRselEELSEELRELEsKRSELRRELEELREKLAQLELRLEGlevrIDNLQERLSEEYSLTLEEAEALE 960
|
330 340
....*....|....*....|....
gi 1907139925 1821 KMEQSNLGKLELSVRKLRQELEQL 1844
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKEL 984
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1749-2090 |
9.95e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 9.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1749 ATQQQRRELERQRQLLERDRRETERVRAESQALQscvECLSKEKEDLQGQCESWEKK----SSHAQRVLAATEESNKMEQ 1824
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRL---VEMARELEELSARESDLEQDyqaaSDHLNLVQTALRQQEKIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1825 SNLGKLELSVRklrqeLEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLD------LAKQDLIHTTKCQN 1898
Cdd:COG3096 352 YQEDLEELTER-----LEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDvqqtraIQYQQAVQALEKAR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1899 ELLNEQTQLQEDISKWMARLESCQKE-TETKEQQVQQLQDEiRESKLRLDQQEMMFQKLQKERERE-------------- 1963
Cdd:COG3096 427 ALCGLPDLTPENAEDYLAAFRAKEQQaTEEVLELEQKLSVA-DAARRQFEKAYELVCKIAGEVERSqawqtarellrryr 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1964 EQKFEAGKV-TLEQQQRQLEKELTDQKS--RL-----KQLLTDVSAAEGRLGTLQEEERRIEGLE----------RMLSQ 2025
Cdd:COG3096 506 SQQALAQRLqQLRAQLAELEQRLRQQQNaeRLleefcQRIGQQLDAAEELEELLAELEAQLEELEeqaaeaveqrSELRQ 585
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 2026 AKQQLSEREQQLMAKSGELLALQK----------EADDMRADFSLLRNQFL---TERKKAEKQVAGLKEALKIQRSQL 2090
Cdd:COG3096 586 QLEQLRARIKELAARAPAWLAAQDalerlreqsgEALADSQEVTAAMQQLLereREATVERDELAARKQALESQIERL 663
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
439-797 |
1.30e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVlratqefkQLEEAIQQKKISEAEKD-LLLKQLSGRLQHLNRLRQEAL--- 514
Cdd:pfam01576 93 QLQNEKKKMQQHIQDLEEQLDEEEAARQKL--------QLEKVTTEAKIKKLEEDiLLLEDQNSKLSKERKLLEERIsef 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 515 --DLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEE 592
Cdd:pfam01576 165 tsNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 593 IKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRL------TEVQQE---K 661
Cdd:pfam01576 245 LQAALARLEEETAQKNNALKKirELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELedtldtTAAQQElrsK 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 662 EELELI----AMDAENMRKE-------------LAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLkdaeTSQLK 724
Cdd:pfam01576 325 REQEVTelkkALEEETRSHEaqlqemrqkhtqaLEELTEQLEQAKRNKANLEKAKQALESENAELQAELRT----LQQAK 400
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 725 QELEKLLRRTQLEQSVLQ---TELEKERESLRDALGKAQSSEEKQQEN-NELRTQLKQLQDDNSLLKKQLKEFQNHL 797
Cdd:pfam01576 401 QDSEHKRKKLEGQLQELQarlSESERQRAELAEKLSKLQSELESVSSLlNEAEGKNIKLSKDVSSLESQLQDTQELL 477
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1541-2057 |
1.65e-05 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 50.18 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1541 EKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESetlLQAKRAELETLKSQVTSQQQELAVLDselghRREELLLLQDSL 1620
Cdd:PRK10246 191 EQHKSARTELEKLQAQASGVALLTPEQVQSLTAS---LQVLTDEEKQLLTAQQQQQQSLNWLT-----RLDELQQEASRR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1621 AQAKADLQEALT-----LGETEVAEKCSHIR-------EVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQ 1688
Cdd:PRK10246 263 QQALQQALAAEEkaqpqLAALSLAQPARQLRphweriqEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1689 VVLQQLSRHKTElknvADILQLETSELQGLKLQHDQ--------------------KVVELEKAQVDVLEEKLELENLQQ 1748
Cdd:PRK10246 343 AQQQSLNTWLAE----HDRFRQWNNELAGWRAQFSQqtsdreqlrqwqqqlthaeqKLNALPAITLTLTADEVAAALAQH 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1749 ATQQQRRE----LERQRQLLERDRRETERVRAESQALQSCVECLSKEKE-----------DLQGQCESWEK-KSSHAQRV 1812
Cdd:PRK10246 419 AEQRPLRQrlvaLHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRqrykektqqlaDVKTICEQEARiKDLEAQRA 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1813 ---------LAATEESNKMEQSNlgKLELSVRKLR-----QELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEElds 1878
Cdd:PRK10246 499 qlqagqpcpLCGSTSHPAVEAYQ--ALEPGVNQSRldaleKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQE--- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1879 tQDHLDLAKQDLIHTtkcqnelLNEQTQLQEDISKWMarlescqKETETKEQQVQQLqdeiresklrldQQEMMFQKLQK 1958
Cdd:PRK10246 574 -EQALTQQWQAVCAS-------LNITLQPQDDIQPWL-------DAQEEHERQLRLL------------SQRHELQGQIA 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1959 EREREEQKFEAgkvTLEQQQRQLEKELTdqksRLKQLLTDVSAAEGRLGTLQEEERRIeglermlsQAKQQLSEREQQLM 2038
Cdd:PRK10246 627 AHNQQIIQYQQ---QIEQRQQQLLTALA----GYALTLPQEDEEASWLATRQQEAQSW--------QQRQNELTALQNRI 691
|
570
....*....|....*....
gi 1907139925 2039 AKSGELLALQKEADDMRAD 2057
Cdd:PRK10246 692 QQLTPLLETLPQSDDLPHS 710
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1819-2091 |
1.71e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1819 SNKMEQSNLGKLELsvRKLRQELEQLSQDkLALHSEVAEVQQQLQG---KQEAINSLQEELDSTQD-HLDLAKQDlihTT 1894
Cdd:pfam17380 285 SERQQQEKFEKMEQ--ERLRQEKEEKARE-VERRRKLEEAEKARQAemdRQAAIYAEQERMAMERErELERIRQE---ER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1895 KCQNELLNEQtQLQEDISKwMARLESCQKETETKEQQVQQ---------LQDEIRESKLRLDQQEMMFQKLQKE--RERE 1963
Cdd:pfam17380 359 KRELERIRQE-EIAMEISR-MRELERLQMERQQKNERVRQeleaarkvkILEEERQRKIQQQKVEMEQIRAEQEeaRQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1964 EQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQakQQLSEREQQLMAKSGE 2043
Cdd:pfam17380 437 VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILE--KELEERKQAMIEEERK 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 2044 LLALQKEADDMR-----------ADFSLLRNQFLTERKKAEKQVAGLKEalkiQRSQLE 2091
Cdd:pfam17380 515 RKLLEKEMEERQkaiyeeerrreAEEERRKQQEMEERRRIQEQMRKATE----ERSRLE 569
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
755-993 |
1.78e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 755 ALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihsps 834
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----------AALERRIAALARRIRALEQELA----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 835 dVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERA--LEARIKFDK------RQH 906
Cdd:COG4942 80 -ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARReqaeelRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 907 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAA 986
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1907139925 987 SDKLAAA 993
Cdd:COG4942 239 AAERTPA 245
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
480-789 |
2.00e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.91 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 480 EAIQQKKISEAEKDLLLKQLSGRLQHLN---RLRQEALDLEIQMEKQRKEIAEKHEEINTVQlatdsldpkdpkhshmKA 556
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALLDkidRQKEETEQLKQQLAQAPAKLRQAQAELEALK----------------DD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 557 QKRGKEQQLDimNRQYTQLESRLDEILcriaketeeikdleQQLTDGQIAANEAlkkdlEGVISGLQEylGTIKGQATQA 636
Cdd:PRK11281 110 NDEETRETLS--TLSLRQLESRLAQTL--------------DQLQNAQNDLAEY-----NSQLVSLQT--QPERAQAALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 637 QNECRKLQ---------DEKETllqrLTEVQQEKEELELIAMDAEN--MRKELA---ELESALQEQH-EVNASLQQAQGD 701
Cdd:PRK11281 167 ANSQRLQQirnllkggkVGGKA----LRPSQRVLLQAEQALLNAQNdlQRKSLEgntQLQDLLQKQRdYLTARIQRLEHQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 702 LSAYETEL------ETQLKLKDAETSQLKQELEkllrrtqlEQSVLQTELEKEREsLRDALGKA-QSSEEKQQENNELRT 774
Cdd:PRK11281 243 LQLLQEAInskrltLSEKTVQEAQSQDEAARIQ--------ANPLVAQELEINLQ-LSQRLLKAtEKLNTLTQQNLRVKN 313
|
330
....*....|....*
gi 1907139925 775 QLKQLQDDNSLLKKQ 789
Cdd:PRK11281 314 WLDRLTQSERNIKEQ 328
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1931-2095 |
2.08e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1931 QVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGT-- 2008
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEA----AKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 2009 ----LQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALK 2084
Cdd:COG1579 87 nnkeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
170
....*....|.
gi 1907139925 2085 IQRSQLEKNLL 2095
Cdd:COG1579 167 ELAAKIPPELL 177
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1330-1724 |
2.23e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1330 RLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDL-------LQEKKELELEVEELHRTIERHQQRKDFIDGHVE 1402
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLeeraeelREEAAELESELEEAREAVEDRREEIEELEEEIE 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1403 NLMTELE------------IEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAE----------AENELACTKEKTK 1460
Cdd:PRK02224 395 ELRERFGdapvdlgnaedfLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDR 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1461 SAVEKFTDAkrnLLQTESDAEALEKRAqETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEinkvvaaKDADFQCLN 1540
Cdd:PRK02224 475 ERVEELEAE---LEDLEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEE-------KRERAEELR 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1541 EKKEKLTEELQSlQRDIKAAQHSE-DHHLQVLRESETLLQAKRAELETLKsQVTSQQQELAVLDSELGHRREELlllqds 1619
Cdd:PRK02224 544 ERAAELEAEAEE-KREAAAEAEEEaEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR------ 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1620 laqakADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGElnvhisEKKTQLALIQQEMEKEeknlqvvLQQLSRHKT 1699
Cdd:PRK02224 616 -----EALAELNDERRERLAEKRERKRELEAEFDEARIEEAR------EDKERAEEYLEQVEEK-------LDELREERD 677
|
410 420
....*....|....*....|....*
gi 1907139925 1700 ELKNVADILQLETSELQGLKLQHDQ 1724
Cdd:PRK02224 678 DLQAEIGAVENELEELEELRERREA 702
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
2.33e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.39 E-value: 2.33e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1907139925 126 KLEVLNLSYNLIVKIEKVDKLLRLRELNLSYN-KISKIEGLEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1922-2092 |
2.70e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1922 QKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER-----EREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLL 1996
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1997 TDVSAAEGRLGTLQEEERrIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFL----TERKKA 2072
Cdd:COG3206 247 AQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILasleAELEAL 325
|
170 180
....*....|....*....|
gi 1907139925 2073 EKQVAGLKEALKIQRSQLEK 2092
Cdd:COG3206 326 QAREASLQAQLAQLEARLAE 345
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1532-2056 |
2.89e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1532 KDADFQCLNEKKEKLTEELQ----SLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELET--------------LKSQVT 1593
Cdd:pfam05483 280 QDENLKELIEKKDHLTKELEdikmSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEElnkakaahsfvvteFEATTC 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1594 SQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLG---ETEVAEKCSHIREVKSLLEElSFQKGELNVHISEKK 1670
Cdd:pfam05483 360 SLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKnnkEVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1671 TQLALIQQEMEKEEKNLQVVLQQL-SRHKTELKNVADI-LQLETSELQGLKLQHDQKVVELEKAQV--DVLEEKLELENL 1746
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIkTSEEHYLKEVEDLkTELEKEKLKNIELTAHCDKLLLENKELtqEASDMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1747 QQATQQQRRELERQRQLLERDRRETERVRAEsqaLQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSN 1826
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDE---LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1827 LGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQdhldlakqdlihttkcqnellneqtq 1906
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK-------------------------- 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1907 lqediSKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQemmfQKLQKEREREEQKFEAGKVTL-EQQQRQLEKEL 1985
Cdd:pfam05483 650 -----QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEA----VKLQKEIDKRCQHKIAEMVALmEKHKHQYDKII 720
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1986 TDQKSRLKQLLTDVsaaegrlgtlQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRA 2056
Cdd:pfam05483 721 EERDSELGLYKNKE----------QEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTA 781
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
591-792 |
3.04e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQLTDGQIAANEALKKD-LEGVISGLQEYLGTIKGQATQAQNECRK---------LQDEKETLLQRLTEVQQE 660
Cdd:COG3206 148 ELAAAVANALAEAYLEQNLELRREeARKALEFLEEQLPELRKELEEAEAALEEfrqknglvdLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 661 KEELELIAMDAENMRKEL-AELESALQEQHEVNAS--LQQAQGDLSAYETELETQL---------------KLKDAEtSQ 722
Cdd:COG3206 228 LAEARAELAEAEARLAALrAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSarytpnhpdvialraQIAALR-AQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 723 LKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKE 792
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1486-2030 |
3.51e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1486 RAQETALNLVK-AEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRdIKAAQHSE 1564
Cdd:PRK04863 530 RQQQRAERLLAeFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA-RAPAWLAA 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1565 DHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAK-ADLQEALTLGETEVAEKCS 1643
Cdd:PRK04863 609 QDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGgSEDPRLNALAERFGGVLLS 688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1644 HIREVKSLLE--ELSFQKGELNVHI-----SEKKTQLA----------LIQQE--------MEKEEKNLQVVLQ------ 1692
Cdd:PRK04863 689 EIYDDVSLEDapYFSALYGPARHAIvvpdlSDAAEQLAgledcpedlyLIEGDpdsfddsvFSVEELEKAVVVKiadrqw 768
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1693 QLSRHKTE--LKNVADILQLETselqgLKLQHDQKVVELEKAQVDVLEEKLELENLQQ-------------------ATQ 1751
Cdd:PRK04863 769 RYSRFPEVplFGRAAREKRIEQ-----LRAEREELAERYATLSFDVQKLQRLHQAFSRfigshlavafeadpeaelrQLN 843
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1752 QQRRELERQrqlLERDRRETERVRaeSQALQscveclSKEKEDLQGQCESWEK---KSSHAQRVLAATEESNKMEQS--- 1825
Cdd:PRK04863 844 RRRVELERA---LADHESQEQQQR--SQLEQ------AKEGLSALNRLLPRLNllaDETLADRVEEIREQLDEAEEAkrf 912
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1826 ------NLGKLELSVRKLRQELEQLSQdklaLHSEVAEVQQQLQGKQEAINSLqEELDSTQDHLDLAKqdlihttkcQNE 1899
Cdd:PRK04863 913 vqqhgnALAQLEPIVSVLQSDPEQFEQ----LKQDYQQAQQTQRDAKQQAFAL-TEVVQRRAHFSYED---------AAE 978
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1900 LLNEQTQLQEDISkwmARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVT------ 1973
Cdd:PRK04863 979 MLAKNSDLNEKLR---QRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPadsgae 1055
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 1974 --LEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQeeeRRIEGLERMLSQAKQQL 2030
Cdd:PRK04863 1056 erARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLT---KKLRKLERDYHEMREQV 1111
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
672-1006 |
3.62e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 672 ENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELetQLKLKDAETSqLKQELEKLLRRTQLEQSvLQTELEKERES 751
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA--SREETFARTA-LKNARLDLRRLFDEKQS-EKDKKNKALAE 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 752 LRDALGKAQSSEEKQQENNELRTQ--LKQLQDDNSLLKKQLKEFQNHLNHVVDGLIH--PEEVAARVDELRKRLKLGAGE 827
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDKKHQawLEEQKEQKREARTEKQAYWQVVEGALDAQLAllKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 828 M-RIHSPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRE--RKLHEEMALQQEKLANGQEEFRQACER------ALEA 897
Cdd:pfam12128 756 YkRDLASLGVDPDVIAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIA 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 898 RIKFDKRQHNARIQQLENEIHYLQENLKSME-KIQGLTDLQL----QEADEEKERILAQLQELEKKKKREdARSQEQFLg 972
Cdd:pfam12128 836 DTKLRRAKLEMERKASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDYL-SESVKKYV- 913
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907139925 973 ldEELKSLKKAVAAS------DKLAAAELTIAKDQLKSLH 1006
Cdd:pfam12128 914 --EHFKNVIADHSGSglaetwESLREEDHYQNDKGIRLLD 951
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1836-2001 |
3.63e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1836 KLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTtkcqNELLNEQTQLQEDISKwm 1915
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV----EARIKKYEEQLGNVRN-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1916 AR-LESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQ 1994
Cdd:COG1579 88 NKeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*..
gi 1907139925 1995 LLTDVSA 2001
Cdd:COG1579 168 LAAKIPP 174
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
522-1055 |
3.77e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 522 KQRKEIAEKHEEINTVQL-------ATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIK 594
Cdd:PRK01156 149 AQRKKILDEILEINSLERnydklkdVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 595 DLEQQLtdgqIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETlLQRLTEVQQEKEELELIAM--- 669
Cdd:PRK01156 229 NAMDDY----NNLKSALNElsSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEER-HMKIINDPVYKNRNYINDYfky 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 670 --DAENMRKELAELESALQEQHEVNASLQQAQGDLSAYE-------------TELET-------------QLKLKDAETS 721
Cdd:PRK01156 304 knDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIkkksryddlnnqiLELEGyemdynsylksieSLKKKIEEYS 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 722 QLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSS-EEKQQENNELRTQLKQLQDDNSLLKKQ----------- 789
Cdd:PRK01156 384 KNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKvSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlg 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 790 -------LKEFQNHLNHVVDGLIHPEEVAARVDELRKRLK-----LGAGEMRIHSPSDVLGKSL-ADLQKQFSEI--LAR 854
Cdd:PRK01156 464 eeksnhiINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKkrkeyLESEEINKSINEYNKIESArADLEDIKIKIneLKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 855 SQWEKEEAQVRERKLHeemalqQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLT 934
Cdd:PRK01156 544 KHDKYEEIKNRYKSLK------LEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYI 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 935 DLQLQEADEEKERILAQLQELEKKKKREDArsqeqflgLDEELKSLKKAVAASD------KLAAAELTIAKDQLKSLHGT 1008
Cdd:PRK01156 618 DKSIREIENEANNLNNKYNEIQENKILIEK--------LRGKIDNYKKQIAEIDsiipdlKEITSRINDIEDNLKKSRKA 689
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1009 VVRINQERAEE-------LQEAERFSREAMQAAKDLSRAEAEIELLQHLLRERE 1055
Cdd:PRK01156 690 LDDAKANRARLestieilRTRINELSDRINDINETLESMKKIKKAIGDLKRLRE 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
718-966 |
4.14e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 718 AETSQLKQELEKLLRRTQLEQSVLQtELEKERESLRDALGKAQSS-EEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNH 796
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELA-ALKKEEKALLKQLAALERRiAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 797 LnhvvdglihpeevAARVDELRKRLKLgAGEMRIHSPSDVLGKsladlQKQFSEILARSQWEKEEAQVRERKLhEEMALQ 876
Cdd:COG4942 99 L-------------EAQKEELAELLRA-LYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQA-EELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 877 QEKLANGQEEFRQAceralEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELE 956
Cdd:COG4942 159 LAELAALRAELEAE-----RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|
gi 1907139925 957 KKKKREDARS 966
Cdd:COG4942 234 AEAAAAAERT 243
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-668 |
4.45e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 4.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLsELHHEIETAEQKVLRATQEFKQ------LEEAIQQK-KISEAEKDL--LLKQLSGRLQHLNRL 509
Cdd:PHA02562 182 QIQTLDMKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQnkydelVEEAKTIKaEIEELTDELlnLVMDIEDPSAALNKL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 510 RQEALDLEIQMEKQRKEIaEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKE 589
Cdd:PHA02562 261 NTAAAKIKSKIEQFQKVI-KMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 590 TEEIKDLEQQltDGQIAANEALKKDLEGVISGLQEYLGTIKGqatqaqnECRKLQDEKETLLQRLTEVQQEKEELELIA 668
Cdd:PHA02562 340 LELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
441-740 |
4.49e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 441 EDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQ--KKISEAEkdLLLKQ-LSGRLQHLNRLRQEALDLE 517
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLlnKLLPQAN--LLADEtLADRLEELREELDAAQEAQ 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 518 IQMEKQRKEIAEKHEEINTVQlatdsldpKDPkhshmkaqkrgkeQQLDIMNRQYTQLESRLDEILCRIAKETEEIK--- 594
Cdd:COG3096 910 AFIQQHGKALAQLEPLVAVLQ--------SDP-------------EQFEQLQADYLQAKEQQRRLKQQIFALSEVVQrrp 968
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 595 -----DLEQQLTDGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELEl 666
Cdd:COG3096 969 hfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELG- 1046
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 667 IAMDAEnmrkelAElESALQEQHEVNASLQQAQGDLSayetELETQLKLKDAETSQLKQELEKLLR-----RTQLEQSV 740
Cdd:COG3096 1047 VQADAE------AE-ERARIRRDELHEELSQNRSRRS----QLEKQLTRCEAEMDSLQKRLRKAERdykqeREQVVQAK 1114
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
445-1063 |
4.76e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 445 KKISAAQTRLSELHHEIETAEQKVLRATQefkQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALdlEIQMEKQR 524
Cdd:COG3096 347 EKIERYQEDLEELTERLEEQEEVVEEAAE---QLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAI--QYQQAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 525 KEIAEKheeintvQLATDSLDPKDPKHSHmkAQKRGKEQQLDimnRQYTQLESRLD-------------EILCRIAKETE 591
Cdd:COG3096 422 LEKARA-------LCGLPDLTPENAEDYL--AAFRAKEQQAT---EEVLELEQKLSvadaarrqfekayELVCKIAGEVE 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 592 EikdleqqlTDGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQNECRKLQDEketLLQRLTEVQQEKEELEL 666
Cdd:COG3096 490 R--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEE---FCQRIGQQLDAAEELEE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 667 IAMDAEnmrKELAELESALQEQHEVNASLQQAQGDLSAYETELETQ----LKLKDAETsQLKQELEKLLRRTQLEQSVLQ 742
Cdd:COG3096 558 LLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDALE-RLREQSGEALADSQEVTAAMQ 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 743 TELEKERES--LRDALGKAQSSEEKQ-----QENNELRTQLKQLQD---------------------------------- 781
Cdd:COG3096 634 QLLEREREAtvERDELAARKQALESQierlsQPGGAEDPRLLALAErlggvllseiyddvtledapyfsalygparhaiv 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 782 --DNSLLKKQLKEFQNHLNHVV----------DGLIHPEEVAARV----------------------------------- 814
Cdd:COG3096 714 vpDLSAVKEQLAGLEDCPEDLYliegdpdsfdDSVFDAEELEDAVvvklsdrqwrysrfpevplfgraarekrleelrae 793
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 815 -DELRKRL-KLGAGEMRI----HSPSDVLGKSLA------------DLQKQFSEILAR-SQWEKEEAQVRE--------- 866
Cdd:COG3096 794 rDELAEQYaKASFDVQKLqrlhQAFSQFVGGHLAvafapdpeaelaALRQRRSELERElAQHRAQEQQLRQqldqlkeql 873
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 867 ----RKLHEEMALQQEKLANGQEEFRQACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQgltdLQLQEAD 942
Cdd:COG3096 874 qllnKLLPQANLLADETLADRLEELREELDAAQEAQAFI--QQHGKALAQLEPLVAVLQSDPEQFEQLQ----ADYLQAK 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 943 EEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERA----- 1017
Cdd:COG3096 948 EQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLAslkss 1027
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1018 -----EELQEAER--------FSREAMQAA----------------------KDLSRAEAEIELLQHLLREREGQFRDEM 1062
Cdd:COG3096 1028 rdakqQTLQELEQeleelgvqADAEAEERArirrdelheelsqnrsrrsqleKQLTRCEAEMDSLQKRLRKAERDYKQER 1107
|
.
gi 1907139925 1063 E 1063
Cdd:COG3096 1108 E 1108
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1427-1587 |
5.53e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1427 LEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQ--ETALNLVKAEQQLRLL 1504
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1505 QADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAqhsedhhLQVLRESETLLQAKRAE 1584
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE-------LAELEAELEELEAEREE 167
|
...
gi 1907139925 1585 LET 1587
Cdd:COG1579 168 LAA 170
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1828-2014 |
5.55e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1828 GKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHttkcqNELLNEQTQL 1907
Cdd:COG4717 63 GRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-----LPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1908 QEDISKWMARLESCQ---KETETKEQQVQQLQDEIRESKLRLDQQEmmfQKLQKEREREEQKFEAGKVTLEQQQRQLEKE 1984
Cdd:COG4717 138 EAELAELPERLEELEerlEELRELEEELEELEAELAELQEELEELL---EQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190
....*....|....*....|....*....|
gi 1907139925 1985 LTDQKSRLKQLLTDVSAAEGRLGTLQEEER 2014
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1401-2092 |
5.77e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 5.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1401 VENLMTELEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLlaeaenelactkekTKSAVEKFTDAKRNLLQTESDA 1480
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGL--------------KPSYKDFDFDAKEDNRADEATE 1094
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1481 EALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTE--ELQSLQRDIK 1558
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDarKAEEARKAED 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1559 AAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELlllqDSLAQAKADLQEAltlgetEV 1638
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV----KKAEEAKKDAEEA------KK 1244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1639 AEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADilqlETSELQGL 1718
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE----EAKKADEA 1320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1719 KLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVEcLSKEKEDLQGQ 1798
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKKK 1399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1799 CESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQElEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDS 1878
Cdd:PTZ00121 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1879 TQDhldlakqdlihtTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMmfQKLQK 1958
Cdd:PTZ00121 1479 AEE------------AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA--KKAEE 1544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1959 EREREEQKfEAGKVTLEQQQRQLEKELTDQKSRLKQLLtdvSAAEGRlgtlQEEERRIEGLERMLSQAKQQLSE---REQ 2035
Cdd:PTZ00121 1545 KKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNMALR---KAEEAK----KAEEARIEEVMKLYEEEKKMKAEeakKAE 1616
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 2036 QLMAKSGELlalqKEADDMRADFSLLRNQFLTERKKAEkQVAGLKEALKIQRSQLEK 2092
Cdd:PTZ00121 1617 EAKIKAEEL----KKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAK 1668
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1324-1964 |
6.64e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1324 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIErhqqrkdfidghven 1403
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE--------------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1404 lmtelEIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELactkEKTKSAVEKFTDAKRNLLQTESDAEAL 1483
Cdd:PRK03918 225 -----KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI----EELKKEIEELEEKVKELKELKEKAEEY 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1484 EKRAQEtalnLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKvvaakdadfqcLNEKKEKLTEELQSLQRDikaaqhs 1563
Cdd:PRK03918 296 IKLSEF----YEEYLDELREIEKRLSRLEEEINGIEERIKELEE-----------KEERLEELKKKLKELEKR------- 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1564 edhhLQVLRESETLLQ---AKRAELETLKSQVTsqqqelavldselGHRREELLLLQDSLAQAKADLQEALTLGETEVAE 1640
Cdd:PRK03918 354 ----LEELEERHELYEeakAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1641 KCSHIREVKSLLEELSFQKGELNV---HISE--KKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSEL 1715
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAKGKCPVcgrELTEehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1716 QGLKLQHDQKVVELEKAQVDVLeeklelenlqqatqqqrrELERQRQLLERDRRETERVRAESQALQSCVEclskEKEDL 1795
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNLE------------------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEEL 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1796 QGQCESWEKKSSHAQRVLAatEESNKMEQSNLGKLELSVRKLrQELEQLSQDKLALHSevaeVQQQLQGKQEAINSLQEE 1875
Cdd:PRK03918 555 KKKLAELEKKLDELEEELA--ELLKELEELGFESVEELEERL-KELEPFYNEYLELKD----AEKELEREEKELKKLEEE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1876 LDSTQDHLDLAKQDLIHTTKCQNELLNEQTQ--------LQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLD 1947
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEeeyeelreEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
650
....*....|....*..
gi 1907139925 1948 QQEMMFQKLQKEREREE 1964
Cdd:PRK03918 708 KAKKELEKLEKALERVE 724
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1747-2096 |
6.70e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1747 QQATQQQRRELERQRQLLERDRRETE-------RVRAESQALQSCVECLSKEKEDLQGQCESWEKKsshaQRVLAATEES 1819
Cdd:COG5022 765 LQALKRIKKIQVIQHGFRLRRLVDYElkwrlfiKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREK----KLRETEEVEF 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1820 NKMEQSNLGKLELSVRKL-RQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQeELDSTQDHLDlakQDLIHTTKCQN 1898
Cdd:COG5022 841 SLKAEVLIQKFGRSLKAKkRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSIS-SLKLVNLELE---SEIIELKKSLS 916
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1899 ELLNEQTQLQediSKWMARLESCQKETETKEQ---------QVQQLQDEIRESKLRLDQQEMMFQKLQKERER---EEQK 1966
Cdd:COG5022 917 SDLIENLEFK---TELIARLKKLLNNIDLEEGpsieyvklpELNKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSE 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1967 FEAGKVTLEQQQRQLEkELTDQKSRLKQLLTDVS---AAEGRLGTLQEEERR---IEGLERMLSQAKQQLSEREQQLMAK 2040
Cdd:COG5022 994 LKNFKKELAELSKQYG-ALQESTKQLKELPVEVAelqSASKIISSESTELSIlkpLQKLKGLLLLENNQLQARYKALKLR 1072
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 2041 SGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKEALKIQRSQLEKNLLL 2096
Cdd:COG5022 1073 RENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLL 1128
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1617-1824 |
6.90e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 6.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1617 QDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR 1696
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1697 HKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRA 1776
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1907139925 1777 ESQALQSCVECLSKEKEDLQGQCESweKKSSHAQRVLAATEESNKMEQ 1824
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEK--ELAELAAELAELQQEAEELEA 227
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1540-1794 |
7.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1540 NEKKEKLTEELQSLQRDIKAAQhsedhhlQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDS 1619
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELE-------KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1620 LAQAKADLQEaltlgetevaekcshirevksLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVvLQQLSRhkt 1699
Cdd:COG4942 92 IAELRAELEA---------------------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAP--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1700 ELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQrqlLERDRRETERVRAESQ 1779
Cdd:COG4942 147 ARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE---LAELAAELAELQQEAE 223
|
250
....*....|....*
gi 1907139925 1780 ALQSCVECLSKEKED 1794
Cdd:COG4942 224 ELEALIARLEAEAAA 238
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
439-780 |
7.62e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.03 E-value: 7.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQL--------EEAIQQKKISEAEKDLLlkQLSGRLQHLNRLR 510
Cdd:PRK04863 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAsdhlnlvqTALRQQEKIERYQADLE--ELEERLEEQNEVV 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 511 QEA----LDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRI 586
Cdd:PRK04863 372 EEAdeqqEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 587 AKETEEIKDLEQQLTDGQiAANEALKKDLEGV--ISG----------LQEYLGTIKGQATQAQNEcRKLQDEKETLLQRL 654
Cdd:PRK04863 452 QEATEELLSLEQKLSVAQ-AAHSQFEQAYQLVrkIAGevsrseawdvARELLRRLREQRHLAEQL-QQLRMRLSELEQRL 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 655 TEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKlkdaetsQLKQELEKLLRRT 734
Cdd:PRK04863 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE-------QLQARIQRLAARA 602
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 735 QlEQSVLQTELEKERESLRDALGKAQSSE-----------EKQQENNELRTQLKQLQ 780
Cdd:PRK04863 603 P-AWLAAQDALARLREQSGEEFEDSQDVTeymqqllererELTVERDELAARKQALD 658
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1677-2012 |
8.25e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.58 E-value: 8.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1677 QQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRE 1756
Cdd:pfam07888 54 NRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1757 LERQRQLLERD----RRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLEL 1832
Cdd:pfam07888 134 LEEDIKTLTQRvlerETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1833 SVRKLRQELEQLSQDKL---ALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLiHTTKCQNELLNEQ----- 1904
Cdd:pfam07888 214 TITTLTQKLTTAHRKEAeneALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAEL-HQARLQAAQLTLQladas 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1905 TQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREE-----QKFEAGKVTLEQQ-- 1977
Cdd:pfam07888 293 LALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKdcnrvQLSESRRELQELKas 372
|
330 340 350
....*....|....*....|....*....|....*
gi 1907139925 1978 QRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEE 2012
Cdd:pfam07888 373 LRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADA 407
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
436-1020 |
8.42e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 436 PDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALD 515
Cdd:COG5022 866 KETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 516 LEIQMEKQrKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDeilcRIAKETEEIKD 595
Cdd:COG5022 946 PSIEYVKL-PELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG----ALQESTKQLKE 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 596 LEQQLT--------DGQIAANEALKKDLEGVISGLqeylgTIKGQATQAQNECRKLQDEKETLLQRLTEVQQ--EKEELE 665
Cdd:COG5022 1021 LPVEVAelqsaskiISSESTELSILKPLQKLKGLL-----LLENNQLQARYKALKLRRENSLLDDKQLYQLEstENLLKT 1095
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 666 LIAMDAENMRKELAELESALQ----------EQHEVNASLQQAQGDLSAYETELETQLKLKD--AETSQLKQELEKLLRR 733
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQfivaqmiklnLLQEISKFLSQLVNTLEPVFQKLSVLQLELDglFWEANLEALPSPPPFA 1175
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 734 TQLEQSVLQTELEKEReslrdalgkaqsSEEKQQENNELRTQLKQLQD---DNSLLKKQLKEFQNHlnhvvdgLIHPEEV 810
Cdd:COG5022 1176 ALSEKRLYQSALYDEK------------SKLSSSEVNDLKNELIALFSkifSGWPRGDKLKKLISE-------GWVPTEY 1236
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 811 AARVDELRKRLKlgagemrihSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMalQQEKLANGQEEFRQA 890
Cdd:COG5022 1237 STSLKGFNNLNK---------KFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLL--QYINVGLFNALRTKA 1305
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 891 CERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLtdLQLQEADEEKERILAQLQELEKKKKREDARSQEQF 970
Cdd:COG5022 1306 SSLRWKSATEVNYNSEELDDWCREFEISDVDEELEELIQAVKV--LQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDP 1383
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 971 LGLDEEL-KSLKKAVAAsdKLAAAELTIAKDQLKSLHGTVVRINQERAEEL 1020
Cdd:COG5022 1384 ADKENNLpKEILKKIEA--LLIKQELQLSLEGKDETEVHLSEIFSEEKSLI 1432
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1759-2094 |
8.71e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 8.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1759 RQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQsnlgkLELSVRKLR 1838
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1839 QELEQLSQDklalHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQ-NELLNEQTQLQEDISKWMAR 1917
Cdd:COG4717 146 ERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1918 LESCQKETETKEQQVQQLQDEIRESKLRLDQ------------------------------------QEMMFQKLQKERE 1961
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLliaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1962 REEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQakQQLSEREQQLMAKS 2041
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL--EELEQEIAALLAEA 379
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 2042 G--------ELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGL-KEALKIQRSQLEKNL 2094
Cdd:COG4717 380 GvedeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdEEELEEELEELEEEL 441
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
678-929 |
9.03e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 9.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 678 LAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQeLEKLLRRTQLEQSVLQTELEKERESLRDAlg 757
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAEL-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 758 kaqsseekQQENNELRTQLKQLQDDnslLKKQLKE-FQNHLNHVVDGLIHPEEVAarvdELRKRLKLgageMRIHSPSDv 836
Cdd:COG4942 89 --------EKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFL----DAVRRLQY----LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 837 lgKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEfrqacERALEARIKFDKRQHNARIQQLENE 916
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 1907139925 917 IHYLQENLKSMEK 929
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
457-790 |
9.75e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 457 LHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRlQHLNRLR------------QEALD-----LEIQ 519
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAS-DHLNLVQtalrqqekieryQEDLEelterLEEQ 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 520 MEkQRKEIAEKHEEIN-TVQLATDSLDpkdpkhsHMKAQKRGKEQQLDIMNR---QYTQLESRLDEI--LCRI------- 586
Cdd:COG3096 367 EE-VVEEAAEQLAEAEaRLEAAEEEVD-------SLKSQLADYQQALDVQQTraiQYQQAVQALEKAraLCGLpdltpen 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 587 ---------AKE---TEEIKDLEQQLTDGQIAANEaLKKDLEGVISGLQEylgTIKGQATQAQNECRKLQDEKETLLQRL 654
Cdd:COG3096 439 aedylaafrAKEqqaTEEVLELEQKLSVADAARRQ-FEKAYELVCKIAGE---VERSQAWQTARELLRRYRSQQALAQRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 655 TEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLL-RR 733
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRaRI 594
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 734 TQLEQS-----VLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQL 790
Cdd:COG3096 595 KELAARapawlAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1835-2092 |
9.84e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1835 RKLRQELEQLS----QDKLaLHSEVAEVQQQLQGKQEAINSLQEELDStqdhldlakqdlihttkcQNELLNEQTQLQ-E 1909
Cdd:PHA02562 153 RKLVEDLLDISvlseMDKL-NKDKIRELNQQIQTLDMKIDHIQQQIKT------------------YNKNIEEQRKKNgE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1910 DISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKER----------EREEQKFEAGKV------T 1973
Cdd:PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAakikskieqfQKVIKMYEKGGVcptctqQ 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1974 LEQQQRQLEKeLTDQKS----RLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSereqqlmaksgellALQK 2049
Cdd:PHA02562 294 ISEGPDRITK-IKDKLKelqhSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLI--------------TLVD 358
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1907139925 2050 EADDMRADFSLLRNQFLTERKKAEKQVAGLKEaLKIQRSQLEK 2092
Cdd:PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDK-IVKTKSELVK 400
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
472-1097 |
1.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 472 TQEFKQLEEAIQQK-KISEAEKDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEkheeintVQLATDSLDPKDPK 550
Cdd:pfam02463 165 SRLKRKKKEALKKLiEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE-------EYLLYLDYLKLNEE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 551 HSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEALKKDLEGvisgLQEYLGTIK 630
Cdd:pfam02463 238 RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK----LERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 631 GQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELE 710
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 711 TQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQ-LQDDNSLLKKQ 789
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLkDELELKKSEDL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 790 LKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKL 869
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 870 HEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLE-NEIHYLQENLKSMEKIQGLTDLQLQEADEEKERI 948
Cdd:pfam02463 554 SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEiDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 949 LAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQERAEELQEAERFSR 1028
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1029 EAMQA-----AKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAKQRAEITRLR 1097
Cdd:pfam02463 714 KLKLEaeellADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
668-900 |
1.48e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 668 AMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKL---LRRTQLEQSVLQTE 744
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALeaeLAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 745 LEKERESLRDALGKAQSSEE--------KQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVvdglihpEEVAARVDE 816
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL-------AALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 817 LRKRLKLGAGEMRIHSpsdvlgKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALE 896
Cdd:COG4942 172 ERAELEALLAELEEER------AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....
gi 1907139925 897 ARIK 900
Cdd:COG4942 246 AGFA 249
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1427-1991 |
1.64e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1427 LEKTLLKRRSELREADRLLAEAENELAcTKEKTKSAVEKFTDAKRNLLQTESD-------AEALEKRAQETALNLVKAEQ 1499
Cdd:TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELA-SLEQNKNHINNELESKEEQLSSYEDklfdvcgSQDEESDLERLKEEIEKSSK 653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1500 QLRLLQADAEDLEQHKikqEEILKEINKVVAAKDADFQCLNEKKEkLTEELQSLQRDIKAAQhsedhhlqvlRESETLLQ 1579
Cdd:TIGR00606 654 QRAMLAGATAVYSQFI---TQLTDENQSCCPVCQRVFQTEAELQE-FISDLQSKLRLAPDKL----------KSTESELK 719
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1580 AKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEkcshIREVKSLLEELSFQK 1659
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE----EESAKVCLTDVTIME 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1660 gelNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEE 1739
Cdd:TIGR00606 796 ---RFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1740 KLELENLQQATQQQRRELERQrqllerdrretervraeSQALQSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEES 1819
Cdd:TIGR00606 873 KLQIGTNLQRRQQFEEQLVEL-----------------STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1820 NKMEQsnlgkleLSVRKLRQELEQLSQDKLALHSEVAE-VQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQN 1898
Cdd:TIGR00606 936 NKKAQ-------DKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDID 1008
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1899 ELLNEQTQLQEDISKwMARLESCQKETETKEQQVQQLqdeireSKLRLDQQEMMFQKLQKERE---REEQKFEAGKVTLE 1975
Cdd:TIGR00606 1009 TQKIQERWLQDNLTL-RKRENELKEVEEELKQHLKEM------GQMQVLQMKQEHQKLEENIDlikRNHVLALGRQKGYE 1081
|
570
....*....|....*.
gi 1907139925 1976 QQQRQLEKELTDQKSR 1991
Cdd:TIGR00606 1082 KEIKHFKKELREPQFR 1097
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
439-959 |
1.64e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 439 QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLN----RLRQEAL 514
Cdd:TIGR04523 90 KLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNnkynDLKKQKE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 515 DLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIK 594
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 595 DLEQQLTDgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTevQQEKEELELIAMDAENM 674
Cdd:TIGR04523 250 NTQTQLNQ-LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN--KELKSELKNQEKKLEEI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 675 RKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELE-KLLRRTQLEQSV--LQTELEKEREs 751
Cdd:TIGR04523 327 QNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsYKQEIKNLESQIndLESKIQNQEK- 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 752 lrDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHlNHVVDGLIhpEEVAARVDELRKRLKLGAGEMR-I 830
Cdd:TIGR04523 406 --LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELII--KNLDNTRESLETQLKVLSRSINkI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 831 HSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLhEEMALQQEKLANG----QEEFRQACERALEARIKFDKRQH 906
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI-SSLKEKIEKLESEkkekESKISDLEDELNKDDFELKKENL 559
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 907 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKK 959
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKI 612
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1613-1847 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1613 LLLLQDSLAQA--KADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVV 1690
Cdd:COG4942 9 LLLALAAAAQAdaAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1691 LQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRE 1770
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1771 TERVRAESQALqscveclskeKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQD 1847
Cdd:COG4942 169 LEAERAELEAL----------LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
440-964 |
1.90e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.82 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 440 LEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQE--ALDLE 517
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEikTAESD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 518 IQMEKQR----KEIAEKHEEINTvqlatdslDPKDPKHSHMKAQKRGKEQQLDimnrqytqlesrLDEILCRIAKETEEI 593
Cdd:PRK01156 265 LSMELEKnnyyKELEERHMKIIN--------DPVYKNRNYINDYFKYKNDIEN------------KKQILSNIDAEINKY 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 594 KDLEQQLTDGQIAANEALKK-----DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQqekEELELIA 668
Cdd:PRK01156 325 HAIIKKLSVLQKDYNDYIKKksrydDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFIS---EILKIQE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 669 MDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLK--------------LKDAETSQLKQELEKLLRRT 734
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEmlngqsvcpvcgttLGEEKSNHIINHYNEKKSRL 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 735 QLEQSVLQTELEKERESLRDAlgKAQSSEEKQQENNELRTQLKQLQDdnslLKKQLKEFQNHLNHVVDGLIHPEEVAARV 814
Cdd:PRK01156 482 EEKIREIEIEVKDIDEKIVDL--KKRKEYLESEEINKSINEYNKIES----ARADLEDIKIKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 815 delrKRLKLGAGEMR------------------IHSPSDVLGKSLADLQKQFSEILAR---------SQWEKEEAQVR-- 865
Cdd:PRK01156 556 ----KSLKLEDLDSKrtswlnalavislidietNRSRSNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnl 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 866 --ERKLHEEMALQQEKLANGQEEFRQacERALEARIKFDKRQHNARIQQLENEIHY----LQENLKSMEKIQGLTDLQLQ 939
Cdd:PRK01156 632 nnKYNEIQENKILIEKLRGKIDNYKK--QIAEIDSIIPDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRT 709
|
570 580
....*....|....*....|....*
gi 1907139925 940 EADEEKERILAQLQELEKKKKREDA 964
Cdd:PRK01156 710 RINELSDRINDINETLESMKKIKKA 734
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1455-1878 |
1.99e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1455 TKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQhKIKQEEILKEINKVVAAKDA 1534
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1535 DFQCLNEKKEKLtEELQSLQRDIKAA-QHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREEL 1613
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELeAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1614 LLLQDSLAQAKADLQealTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEmekeeknLQVVLQQ 1693
Cdd:COG4717 223 EELEEELEQLENELE---AAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL-------LALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1694 LSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETER 1773
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1774 VRAESQALQSCVECLSKEKEDLQgQCESWEKKSSHAQRVLAA--TEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLAL 1851
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEEllGELEELLEALDEEELEEELEELEEELEELEEELEEL 451
|
410 420
....*....|....*....|....*....
gi 1907139925 1852 HSEVAEVQQQLQ--GKQEAINSLQEELDS 1878
Cdd:COG4717 452 REELAELEAELEqlEEDGELAELLQELEE 480
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1958-2089 |
2.51e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1958 KEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEGRLgtlQEEERRIEGLERMLSQAKQqlseREQQL 2037
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAEL---EEKDERIERLERELSEARS----EERRE 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 2038 MAKSGELLALQKEADDMRADFSLLRNqfltERKKAEKQVAGLKEALKIQRSQ 2089
Cdd:COG2433 461 IRKDREISRLDREIERLERELEEERE----RIEELKRKLERLKELWKLEHSG 508
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
574-799 |
2.56e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 574 QLESRLDEILCRIAKETEE---IKDLEQQLTdgQIAANEALKKDLEgvisglqeylgTIKGQATQAQNECRKLQDEketl 650
Cdd:PRK11281 40 DVQAQLDALNKQKLLEAEDklvQQDLEQTLA--LLDKIDRQKEETE-----------QLKQQLAQAPAKLRQAQAE---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 651 LQRLTEVQQEKEELELIAMdaenmrkELAELESALQEqheVNASLQQAQGDLSAYETEL---ETQLKLKDAETS---QLK 724
Cdd:PRK11281 103 LEALKDDNDEETRETLSTL-------SLRQLESRLAQ---TLDQLQNAQNDLAEYNSQLvslQTQPERAQAALYansQRL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 725 QELEKLLRRTQLEQSVLqtelekeRESLRDALGKAQSSEEKQqenNELRTQL----KQLQDdnsLLKKQ---LKEFQNHL 797
Cdd:PRK11281 173 QQIRNLLKGGKVGGKAL-------RPSQRVLLQAEQALLNAQ---NDLQRKSlegnTQLQD---LLQKQrdyLTARIQRL 239
|
..
gi 1907139925 798 NH 799
Cdd:PRK11281 240 EH 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
676-1127 |
3.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 676 KELAELESALQEQHEVNASLQQAQGDLSAYETELEtQLKLKDAETSQLKQELEKLLRRTQLEQsvlqtELEKERESLRDA 755
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQ-----ELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 756 LGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIhpEEVAARVDELRKRLKLgagemrihspsd 835
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL--QDLAEELEELQQRLAE------------ 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 836 vLGKSLADLQKQFSEIlarsqwEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLEN 915
Cdd:COG4717 211 -LEEELEEAQEELEEL------EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 916 EIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQ-LQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAA-A 993
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEeL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 994 ELTIAKDQLKSLhgtVVRINQERAEELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGAN 1073
Cdd:COG4717 364 QLEELEQEIAAL---LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEE 440
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1074 SQLL--EIEALNEAMAKQRAEITRLRDVLNLTGAGTKggIENVLEEIAELRHAVSA 1127
Cdd:COG4717 441 LEELeeELEELREELAELEAELEQLEEDGELAELLQE--LEELKAELRELAEEWAA 494
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1561-2038 |
3.16e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.89 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1561 QHSEDHHLQVLRESETL-LQAKRAELETLKSQVTSQQQ---ELAVLDSELGH--RREELLLLQDSLAQAKADLQEALTLG 1634
Cdd:pfam05557 5 IESKARLSQLQNEKKQMeLEHKRARIELEKKASALKRQldrESDRNQELQKRirLLEKREAEAEEALREQAELNRLKKKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1635 ETEVAEKcshIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQLETSE 1714
Cdd:pfam05557 85 LEALNKK---LNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1715 LQGLKlQHDQKVVELEKaQVDVLEEKLELENLQQATQQQRRELERqrqLLERDRRETERVRaesqALQSCVECLSKEKED 1794
Cdd:pfam05557 162 QSSLA-EAEQRIKELEF-EIQSQEQDSEIVKNSKSELARIPELEK---ELERLREHNKHLN----ENIENKLLLKEEVED 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1795 LQGQCESWEK----------KSSHAQRVLAATEESNKMEQSNLGKLELsvrkLRQELEQLSQDKLALHSEVAEVQQQLQG 1864
Cdd:pfam05557 233 LKRKLEREEKyreeaatlelEKEKLEQELQSWVKLAQDTGLNLRSPED----LSRRIEQLQQREIVLKEENSSLTSSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1865 KQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQdeireskl 1944
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLE-------- 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1945 RLDQQEMMFQKLQKEREREEQKFEAGKVTL---EQQQRQLEKELtdQKSRLKQLLTDVSAAEGRLGTLQeeeRRIEGLER 2021
Cdd:pfam05557 381 RIEEAEDMTQKMQAHNEEMEAQLSVAEEELggyKQQAQTLEREL--QALRQQESLADPSYSKEEVDSLR---RKLETLEL 455
|
490
....*....|....*..
gi 1907139925 2022 MLSQAKQQLSEREQQLM 2038
Cdd:pfam05557 456 ERQRLREQKNELEMELE 472
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1599-2039 |
3.76e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1599 LAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQ 1678
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1679 EMEKEEknLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQAT-QQQRREL 1757
Cdd:COG4717 124 LLQLLP--LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1758 ERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKK------------SSHAQRVLAATEESNKMEQS 1825
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaallalLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1826 NLGKLELSVRKLRQELEQLSQ--DKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNE 1903
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKeaEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1904 QTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEagKVTLEQQQRQLEK 1983
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD--EEELEEELEELEE 439
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1984 ELTDQKSRLKQLLTDVSAAEGRLGTLqEEERRIEGLERMLSQAKQQLSEREQQLMA 2039
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQL-EEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-787 |
4.03e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 438 LQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLS-GRLQHLNRLRQEALDL 516
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEEL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDI----------------------------- 567
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlg 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 568 --------MNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanEALKKDLEGVISGLQEYLGTIKgqatqaqnE 639
Cdd:COG4717 285 llallfllLAREKASLGKEAEELQALPALEELEEEELEELL--------AALGLPPDLSPEELLELLDRIE--------E 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 640 CRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAE 719
Cdd:COG4717 349 LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 720 TSQLK-QELEKLLRRTQLEQSVLQTELEKERESLRDaLGKAQSSEEKQQENNELRTQLKQLQDDNSLLK 787
Cdd:COG4717 429 ELEEElEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1435-1876 |
4.21e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1435 RSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETA--LNLVKA----EQQLRLLQADA 1508
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTalrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1509 EDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSE---DHHLQVLRESETLLQAKRAEL 1585
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAiqyQQAVQALERAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1586 ETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGEtEVAEKCSHiREVKSLLEELSFQKgELNVH 1665
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG-EVSRSEAW-DVARELLRRLREQR-HLAEQ 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1666 ISEKKTQLALIQQEMEKEeknlqvvlQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEkaqvdvleeklelen 1745
Cdd:PRK04863 515 LQQLRMRLSELEQRLRQQ--------QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLS--------------- 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1746 LQQATQQQRR-ELERQRQLLERDRRETERVRAESQALQSCVEclskekeDLQGQCeswekksshaqrvlAATEESNKMEQ 1824
Cdd:PRK04863 572 ESVSEARERRmALRQQLEQLQARIQRLAARAPAWLAAQDALA-------RLREQS--------------GEEFEDSQDVT 630
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 1825 SNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEEL 1876
Cdd:PRK04863 631 EYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERF 682
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1662-1856 |
5.20e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.68 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1662 LNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNvadilQLETSELQGLKLQHDQKVVELEKAQVDVLEEKL 1741
Cdd:PRK11637 38 FSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK-----QEEAISQASRKLRETQNTLNQLNKQIDELNASI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1742 ELENLQQAtqQQRRELERQR------------QLL---ERDRREtERVRAE----SQALQSCVECLSKEKEDLQGQCESW 1802
Cdd:PRK11637 113 AKLEQQQA--AQERLLAAQLdaafrqgehtglQLIlsgEESQRG-ERILAYfgylNQARQETIAELKQTREELAAQKAEL 189
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907139925 1803 EKKSSHAQRVLAAT-EESNKMEQS------NLGKLELSVRKLRQELEQLSQDKLALHSEVA 1856
Cdd:PRK11637 190 EEKQSQQKTLLYEQqAQQQKLEQArnerkkTLTGLESSLQKDQQQLSELRANESRLRDSIA 250
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1763-2069 |
5.63e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1763 LLERDRRETERVRAESQALQSCVECLSKEKEdLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLgklELSVRKLRQELE 1842
Cdd:pfam10174 200 LLDQKEKENIHLREELHRRNQLQPDPAKTKA-LQTVIEMKDTKISSLERNIRDLEDEVQMLKTNG---LLHTEDREEEIK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1843 QL----SQDKLaLHSEVAEVQQQLQGKQEAINSLQEELDS-------TQDHLDLAKQDLihTTKCQnellnEQTQLQEDI 1911
Cdd:pfam10174 276 QMevykSHSKF-MKNKIDQLKQELSKKESELLALQTKLETltnqnsdCKQHIEVLKESL--TAKEQ-----RAAILQTEV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1912 SKWMARLESCQKETETKEQQVQQLQD-------EIRESKLRLDQQEMMFQKLQKEREreeqkfeagkvTLEQQQRQLEKE 1984
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEekstlagEIRDLKDMLDVKERKINVLQKKIE-----------NLQEQLRDKDKQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1985 LTDQKSRLKQLLTDVSAAEGRLGTLQE----EERRIEGLERmlsqakqqlsEREQQLMAKSGELLALQKEADDMRADFSL 2060
Cdd:pfam10174 417 LAGLKERVKSLQTDSSNTDTALTTLEEalseKERIIERLKE----------QREREDRERLEELESLKKENKDLKEKVSA 486
|
....*....
gi 1907139925 2061 LRNQfLTER 2069
Cdd:pfam10174 487 LQPE-LTEK 494
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1327-1730 |
5.64e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1327 EVSRLEDIMQHLKSK-QREERRQKASTQ---HSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQ----------Q 1392
Cdd:pfam15921 427 EVQRLEALLKAMKSEcQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdltaslQ 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1393 RKDFIDGHVENLMTELEIEKSLKHHEdiVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRN 1472
Cdd:pfam15921 507 EKERAIEATNAEITKLRSRVDLKLQE--LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1473 LLQTESDAEALEKRAQETALNLV-------KAEQQLRLLQADAEDLEQHKIK----QEEILKEINKVVAAKDadfQCLNE 1541
Cdd:pfam15921 585 AGAMQVEKAQLEKEINDRRLELQefkilkdKKDAKIRELEARVSDLELEKVKlvnaGSERLRAVKDIKQERD---QLLNE 661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1542 KK------EKLTEELQSLQRDIKAAQHsedhhlqvlrESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLL 1615
Cdd:pfam15921 662 VKtsrnelNSLSEDYEVLKRNFRNKSE----------EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1616 LQ----------DSLAQAKADLQEALTLGETEV----AEKCSHIREVKSLLEELSFQKGELNVHISEKKtqlaliqqEME 1681
Cdd:pfam15921 732 MQkqitakrgqiDALQSKIQFLEEAMTNANKEKhflkEEKNKLSQELSTVATEKNKMAGELEVLRSQER--------RLK 803
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1907139925 1682 KEEKNLQVVLQQLSRHKTELKnvaDILQLETSELQGLKLQHDQKVVELE 1730
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQ---DIIQRQEQESVRLKLQHTLDVKELQ 849
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
272-976 |
6.22e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 272 IERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCE---ELESDLSTKKELLKQKTVELTRACQK 348
Cdd:pfam05483 115 IEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCArsaEKTKKYEYEREETRQVYMDLNNNIEK 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 349 QYELEQEL----------AFYKIDAKFEPLNYYPSEYAEI--DKYPDESPYIGKSRYKRNMFATETYIVSDAQavQIRKM 416
Cdd:pfam05483 195 MILAFEELrvqaenarleMHFKLKEDHEKIQHLEEEYKKEinDKEKQVSLLLIQITEKENKMKDLTFLLEESR--DKANQ 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 417 VPEGGQLRHEHTPPRVQAPPDL--QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDL 494
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLtkELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 495 LLKQLSGRLQHLNRLRQEALdleiqmekqrkeiaEKHEEinTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQ 574
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRL--------------EKNED--QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAE 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 575 LESRLDEILcRIAKETEEIKDLEQQLTdGQIAANEALKKDLEGVISGLQeylgtikgqaTQAQNECRKLQDEKETLlqrl 654
Cdd:pfam05483 417 DEKLLDEKK-QFEKIAEELKGKEQELI-FLLQAREKEIHDLEIQLTAIK----------TSEEHYLKEVEDLKTEL---- 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 655 tevqqEKEELELIAMDAeNMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETQLK----LKDAETsQLKQELEKL 730
Cdd:pfam05483 481 -----EKEKLKNIELTA-HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKqienLEEKEM-NLRDELESV 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 731 LRRTQLEQSVLQTELEKERESLRDALGKAQSSEEkqqennelrtQLKQLQDDNSLLKKQLKEFQNHLNHvvdglIHPEEV 810
Cdd:pfam05483 554 REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEK----------QMKILENKCNNLKKQIENKNKNIEE-----LHQENK 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 811 AARVDELRKRLKLGAGEMRIHSpsdvLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQ---EKLANGQEEF 887
Cdd:pfam05483 619 ALKKKGSAENKQLNAYEIKVNK----LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKaiaDEAVKLQKEI 694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 888 RQACERALE---ARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDA 964
Cdd:pfam05483 695 DKRCQHKIAemvALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKM 774
|
730
....*....|..
gi 1907139925 965 RSQEQFLGLDEE 976
Cdd:pfam05483 775 EAKENTAILKDK 786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1708-2067 |
6.43e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1708 LQLETSELQGLKLQHDQkVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLErDRRETERVRAESQALQSCVEC 1787
Cdd:COG4717 73 LKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-LYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1788 LSKEKEDLQGQCESWEKKSSHAQRvlAATEESNKMEQSNLGKLElSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQE 1867
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAE--LQEELEELLEQLSLATEE-ELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1868 AINSLQEELDSTQDHLDLAKQDLI----------------------------------------HTTKCQNELLNEQTQL 1907
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallflLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1908 QEDIS-------KWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQK--FEAGKVTLE--- 1975
Cdd:COG4717 308 QALPAleeleeeELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEeel 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1976 -------QQQRQLEKELTDQKSRLKQLLTDVSAAEGRLGT------LQEEERRIEGLERMLSQAKQQLSEREQQL--MAK 2040
Cdd:COG4717 388 raaleqaEEYQELKEELEELEEQLEELLGELEELLEALDEeeleeeLEELEEELEELEEELEELREELAELEAELeqLEE 467
|
410 420
....*....|....*....|....*..
gi 1907139925 2041 SGELLALQKEADDMRADFSLLRNQFLT 2067
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEEWAA 494
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1826-2050 |
6.62e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1826 NLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKqdlihttkcqnELLNEQT 1905
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLE-----------KEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1906 QLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQ--KFEAGKVTLEQQQRQLEK 1983
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1984 ELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREqQLMAKSGELLALQKE 2050
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKR 380
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1411-2073 |
6.69e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1411 EKSLKHHEDIVDEIECLEKTLLKRRSELREAdrlLAEAENELACTKEKTKSAVE-------KFTDAKRNLLQTESDAEAL 1483
Cdd:pfam01576 130 EAKIKKLEEDILLLEDQNSKLSKERKLLEER---ISEFTSNLAEEEEKAKSLSKlknkheaMISDLEERLKKEEKGRQEL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1484 EKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHS 1563
Cdd:pfam01576 207 EKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAA 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1564 EDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCS 1643
Cdd:pfam01576 287 RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1644 HIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLS-------RHKTELKNVADILQLETSELQ 1716
Cdd:pfam01576 367 QAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlseseRQRAELAEKLSKLQSELESVS 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1717 GLKLQHDQKVVELEKAQVDVLEEKlelenlqQATQQQRRELERQRQLLERDRRETErvrAESQALQSCVECLSKEKEDLq 1796
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSLESQL-------QDTQELLQEETRQKLNLSTRLRQLE---DERNSLQEQLEEEEEAKRNV- 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1797 gqceswEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDklalhseVAEVQQQLQGKQEAINSLQEEL 1876
Cdd:pfam01576 516 ------ERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQ-------LEEKAAAYDKLEKTKNRLQQEL 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1877 DSTQDHLDLAKQDLIHTTKCQ---NELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMF 1953
Cdd:pfam01576 583 DDLLVDLDHQRQLVSNLEKKQkkfDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQL 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1954 QKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLTDVSAAEgrlgtlqEEERRIE-GLERMLSQAKQQLSE 2032
Cdd:pfam01576 663 RAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATE-------DAKLRLEvNMQALKAQFERDLQA 735
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1907139925 2033 REQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAE 2073
Cdd:pfam01576 736 RDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLE 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
431-1003 |
6.77e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 431 RVQAPPDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKK---------ISEAEKDLL-----L 496
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlraeLEEVDKEFAetrdeL 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 497 KQLSGRLQHLN-----------RLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKdpkhshMKAQKRGKEQ-- 563
Cdd:TIGR02169 388 KDYREKLEKLKreinelkreldRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE------IKKQEWKLEQla 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 564 -QLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQL------TDGQIAANEALKKDLEGVIsGLQEYLGTIKGQ---- 632
Cdd:TIGR02169 462 aDLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAraseerVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyata 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 633 -------------------ATQAQNECRKLQDEKETLLQrLTEVQQEKEELELIAMD-----AENMRKELAELESA---- 684
Cdd:TIGR02169 541 ievaagnrlnnvvveddavAKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDgvigfAVDLVEFDPKYEPAfkyv 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 685 -----------LQEQHEVNASLQQAQGDL---SAYETELETQLKLKDAETSQLKQELEKLLRRT---QLEQSVLQTELEk 747
Cdd:TIGR02169 620 fgdtlvvedieAARRLMGKYRMVTLEGELfekSGAMTGGSRAPRGGILFSRSEPAELQRLRERLeglKRELSSLQSELR- 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 748 ERESLRDALGKAQSSEEKQQEnnELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPE----EVAARVDELRK---- 819
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIG--EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkELEARIEELEEdlhk 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 820 -RLKLGAGEMRI-HSPSDVLGKSLADLQKQFSEILARSQwekeEAQVRERKLHEEMALQQEKLANGQEEFRQACER--AL 895
Cdd:TIGR02169 777 lEEALNDLEARLsHSRIPEIQAELSKLEEEVSRIEARLR----EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQikSI 852
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 896 EARI---KFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFlg 972
Cdd:TIGR02169 853 EKEIenlNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE-- 930
|
650 660 670
....*....|....*....|....*....|.
gi 1907139925 973 ldEELKSLKKAVAASDKLAAAELTIAKDQLK 1003
Cdd:TIGR02169 931 --EELSEIEDPKGEDEEIPEEELSLEDVQAE 959
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
428-637 |
8.33e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 428 TPPRVQAPPDL-----QLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQ--QKKISEAEKDL--LLKQ 498
Cdd:COG3883 8 APTPAFADPQIqakqkELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDklQAEIAEAEAEIeeRREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 499 LSGRLQHLNRLRQEALDLEI------------QMEKQRKEIAEKHEEINTVQLATDSLdpkdpkhshmKAQKRGKEQQLD 566
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVllgsesfsdfldRLSALSKIADADADLLEELKADKAEL----------EAKKAELEAKLA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 567 IMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 637
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAaeAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
444-979 |
1.04e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 444 EKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQ---KKISEAEKDL--LLKQLSGRLQHLNRLRQEALDLEI 518
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggDRLEQLEREIerLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 519 QMEKQRKEIAEKHEEIntvqlatdsldpkdpkhshmKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQ 598
Cdd:COG4913 374 PLPASAEEFAALRAEA--------------------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 599 Q---LTDGQIAANEALKKDLEGVISGLQ---EYLgtikgqatQAQNECRKLQDEKETLL--QRLT---EVQQEKEELELI 667
Cdd:COG4913 434 RksnIPARLLALRDALAEALGLDEAELPfvgELI--------EVRPEEERWRGAIERVLggFALTllvPPEHYAAALRWV 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 668 amDAENMRKEL--AELESALQEQHEVNAS-------LQQAQGDLSAY-ETEL---------ETQLKLKDAETS-----QL 723
Cdd:COG4913 506 --NRLHLRGRLvyERVRTGLPDPERPRLDpdslagkLDFKPHPFRAWlEAELgrrfdyvcvDSPEELRRHPRAitragQV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 724 KQEL---EKLLRRTQLEQSVLQ-------TELEKERESLRDALGKAQSS----EEKQQENNELRTQLKQLQD------DN 783
Cdd:COG4913 584 KGNGtrhEKDDRRRIRSRYVLGfdnraklAALEAELAELEEELAEAEERlealEAELDALQERREALQRLAEyswdeiDV 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 784 SLLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKlgagemRIHSPSDVLGKSLADLQKQfseilaRSQWEKEEAQ 863
Cdd:COG4913 664 ASAEREIAELEAELERLDASSDDLAALEEQLEELEAELE------ELEEELDELKGEIGRLEKE------LEQAEEELDE 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 864 VRERKLHEEMALQQEKLANGQEEFRQACERALEARIkfdKRQHNARIQQLENEIHYLQENL-KSMEKIQGLTDLQLQEAD 942
Cdd:COG4913 732 LQDRLEAAEDLARLELRALLEERFAAALGDAVEREL---RENLEERIDALRARLNRAEEELeRAMRAFNREWPAETADLD 808
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1907139925 943 ------EEKERILAQLQ-----ELEKK-KKREDARSQEQFLGLDEELKS 979
Cdd:COG4913 809 adleslPEYLALLDRLEedglpEYEERfKELLNENSIEFVADLLSKLRR 857
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
480-1093 |
1.05e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 480 EAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEKHEEIntvqlatdsldpkdpKHSHMK-AQK 558
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT---------------QQSHAYlTQK 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 559 RGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEA----LKKDLEGVISGLQEYLGTI----- 629
Cdd:TIGR00618 249 REAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKavtqIEQQAQRIHTELQSKMRSRakllm 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 630 KGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETEL 709
Cdd:TIGR00618 329 KRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 710 ETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQ-------DD 782
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihlqetRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 783 NSLLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPsdvLGKSLADLQKQFSEILARSQWEKEEA 862
Cdd:TIGR00618 489 KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQ---LETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 863 QvreRKLHEEMALQQ---------EKLANGQEEFRQACERALEARIKfdkrqhnariQQLENEIHYLQENLKSMEKIQGL 933
Cdd:TIGR00618 566 Q---EIQQSFSILTQcdnrskediPNLQNITVRLQDLTEKLSEAEDM----------LACEQHALLRKLQPEQDLQDVRL 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 934 TDLQLQEADEEKERILAQLQ-ELEKKKKREDARSQEQFlgldeelkslKKAVAASDKLAAAELTIAKDQLKSLHGTVVRI 1012
Cdd:TIGR00618 633 HLQQCSQELALKLTALHALQlTLTQERVREHALSIRVL----------PKELLASRQLALQKMQSEKEQLTYWKEMLAQC 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1013 NQERAEELQEAERFSREAMQAAKDLSRAEAEIE----LLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNEAMAK 1088
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLGSDLAaredALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSH 782
|
....*
gi 1907139925 1089 QRAEI 1093
Cdd:TIGR00618 783 LAAEI 787
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
474-750 |
1.20e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 474 EFKQLEEAIQQKKISEAEKdlLLKQLSgrlQHLNRLRQEaldleiqMEKQRKEIAEKheeintvqlatdsldpkdpkhsh 553
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRS--LLTKLS---EALDKLRSY-------LPKLNPLREEK----------------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 554 MKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanEALK--KDLEGVISGLQ--EYLGTI 629
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 630 KGQATQAQNECRKLQDEKETLLqrltEVQQEKEELELIAM----DAENMRKELAELE-SALQEQHEvnaslqqaqGDLSA 704
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLGfERLELEEE---------GTPSE 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1907139925 705 YETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERE 750
Cdd:PRK05771 216 LIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
1574-1911 |
1.24e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 43.74 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1574 SETLLQAKRAELEtLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEvaeKCSHIREVKSLLE 1653
Cdd:pfam15964 363 SELERQKERLEKE-LASQQEKRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQVEKVTRE---KNSLVSQLEEAQK 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1654 ELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHktelknvadiLQLETSELQGLKLQHDQKVVELEKAQ 1733
Cdd:pfam15964 439 QLASQEMDVTKVCGEMRYQLNQTKMKKDEAEKEHREYRTKTGRQ----------LEIKDQEIEKLGLELSESKQRLEQAQ 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1734 VDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERvRAESQALQScvecLSKEKEDLQG--QCESWEKKSSHAQR 1811
Cdd:pfam15964 509 QDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSN-EAKAQALQA----QQREQELTQKmqQMEAQHDKTVNEQY 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1812 VLAATEESN----KMEQSNLG-KLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAI-------NSLQEELDST 1879
Cdd:pfam15964 584 SLLTSQNTFiaklKEECCTLAkKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRNEELEEQCvqhgrmhERMKQRLRQL 663
|
330 340 350
....*....|....*....|....*....|..
gi 1907139925 1880 QDHLDLAKQDLIHTTKCQNELLNEQTQLQEDI 1911
Cdd:pfam15964 664 DKHCQATAQQLVQLLSKQNQLFKERQNLTEEV 695
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1911-2092 |
1.27e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1911 ISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDqqemmfqKLQKEREREEQkfeagkvTLEQQQRQLEKELTDQKS 1990
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE-------RLRREREKAER-------YQALLKEKREYEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1991 RLKQLLTDVSAAEGRLGTLQEE----ERRIEGLERMLSQAKQQLSEREQQLMAK-SGELLALQKEADDMRADFSLLRNQF 2065
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEEleklTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190
....*....|....*....|....*....|
gi 1907139925 2066 ---LTERKKAEKQVAGLKEALKIQRSQLEK 2092
Cdd:TIGR02169 311 aekERELEDAEERLAKLEAEIDKLLAEIEE 340
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1818-2084 |
1.32e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.98 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1818 ESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDlakqdlihttkcq 1897
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRD------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1898 nELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKlrldqqemmfqKLQKEREREEQKFEAGKVTLEQq 1977
Cdd:COG1340 68 -ELNEKVKELKEERDELNEKLNELREELDELRKELAELNKAGGSID-----------KLRKEIERLEWRQQTEVLSPEE- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1978 qrqlEKELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAD 2057
Cdd:COG1340 135 ----EKELVEKIKELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKE 210
|
250 260
....*....|....*....|....*..
gi 1907139925 2058 FSLLRNQFLTERKKAEKQVAGLKEALK 2084
Cdd:COG1340 211 ADELHKEIVEAQEKADELHEEIIELQK 237
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
437-603 |
1.36e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 437 DLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQ-EALD 515
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 516 LEIQMEKQRKEIAEKHEEINTVQLATdsldpkdpkhshMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKD 595
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEE------------LEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 1907139925 596 LEQQLTDG 603
Cdd:COG1579 164 EREELAAK 171
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
667-910 |
1.39e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 667 IAMDAENMRKELAELESALQEQ-HEVNASLQQAQGDLSAYETE-----LETQLKLKDAETSQLKQELEKLlrRTQLEqsv 740
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQlPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEA--RAELA--- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 741 lqtELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHlnhvvdgliHPEEVAAR--VDELR 818
Cdd:COG3206 237 ---EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPN---------HPDVIALRaqIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 819 KRLKLGAGEMRIHSPSDV--LGKSLADLQKQFSEILARSQwekeEAQVRERKLHEemaLQQEkLANGQEEFRQACERALE 896
Cdd:COG3206 305 AQLQQEAQRILASLEAELeaLQAREASLQAQLAQLEARLA----ELPELEAELRR---LERE-VEVARELYESLLQRLEE 376
|
250
....*....|....
gi 1907139925 897 ARIKFDKRQHNARI 910
Cdd:COG3206 377 ARLAEALTVGNVRV 390
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1775-2081 |
1.40e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.74 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1775 RAESQALQScVECLSKEKEDLQGQCESWEKKSSHA-QRVLAATEesnkmEQSNLGKLELSVRKLRQELEQLSQ-DKLALH 1852
Cdd:PLN02939 149 QARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQ-----EKIHVEILEEQLEKLRNELLIRGAtEGLCVH 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1853 SEVAEvqqqlqgkqeaINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNeqtqlqedISKWMARLESCQKETETKEQQV 1932
Cdd:PLN02939 223 SLSKE-----------LDVLKEENMLLKDDIQFLKAELIEVAETEERVFK--------LEKERSLLDASLRELESKFIVA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1933 QqlQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQrQLEKELTDQKSRLKQLLTDVSAAEgRLGTLQE- 2011
Cdd:PLN02939 284 Q--EDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKLEASLKEANVSKFSSY-KVELLQQk 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 2012 ----EERRIEGLERMLSQAK--QQLSEREQQLMAK---SGELLALQKEADDMRADF----SLLRNQFLTERKKAEKQVAG 2078
Cdd:PLN02939 360 lkllEERLQASDHEIHSYIQlyQESIKEFQDTLSKlkeESKKRSLEHPADDMPSEFwsriLLLIDGWLLEKKISNNDAKL 439
|
...
gi 1907139925 2079 LKE 2081
Cdd:PLN02939 440 LRE 442
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1324-1592 |
1.41e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1324 LENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDI-------DDLLQEKKELELEVEELH-RTIERHQQRKD 1395
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLhkleealNDLEARLSHSRIPEIQAElSKLEEEVSRIE 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1396 FIDGHVENLMTELEIEKSL--KHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNL 1473
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1474 LQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEINKVVAAkDADFQCLNEKKEKLTEELQSL 1553
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRAL 970
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907139925 1554 QR-DIKAAQHSEDhhlQVLRESEtlLQAKRAELETLKSQV 1592
Cdd:TIGR02169 971 EPvNMLAIQEYEE---VLKRLDE--LKEKRAKLEEERKAI 1005
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.43e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.38 E-value: 1.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1907139925 170 NLQKLNLAGNEIEHIPvwFAKKLKSLRVLNLKGN-KISSLQDVSK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
858-969 |
1.56e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 858 EKEEAQVRERKLHEEMALQQEKLANGQEEFrqaceraLEARIKFDK--RQHNARIQQLENEIHYLQENLKsmEKIQGLTD 935
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEI-------HKLRNEFEKelRERRNELQKLEKRLLQKEENLD--RKLELLEK 107
|
90 100 110
....*....|....*....|....*....|....
gi 1907139925 936 LQlQEADEEKERILAQLQELEKKKKREDARSQEQ 969
Cdd:PRK12704 108 RE-EELEKKEKELEQKQQELEKKEEELEELIEEQ 140
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-716 |
1.62e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 315 MLQKQSCEELESDLSTK------KELLKQKTVELTR----------ACQKQyeLEQELAfyKIDAKFEPLNYYPSEYAEI 378
Cdd:pfam15921 395 LEKEQNKRLWDRDTGNSitidhlRRELDDRNMEVQRleallkamksECQGQ--MERQMA--AIQGKNESLEKVSSLTAQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 379 DKYPDESPYIGKSRYKRNM-FATETYIVSDAQA-VQIRKMVPEGGQlrHEHTPPRVQAPPDLQ-----------LEDTEK 445
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMtLESSERTVSDLTAsLQEKERAIEATN--AEITKLRSRVDLKLQelqhlknegdhLRNVQT 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 446 KISAAQTRLSELHHEIETAEQKVLRATQ--------------EFKQLEEAI-------QQKKISEAEKDLLLKQLSGRLQ 504
Cdd:pfam15921 549 ECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVS 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 505 HLNRLRQEALDLEIQMEKQRKEIAEKHEEI-NTVQLATDSLDPKDPKHSHMKAQKRGKEQQLDIM-NRQYTQLESRLDEI 582
Cdd:pfam15921 629 DLELEKVKLVNAGSERLRAVKDIKQERDQLlNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTtNKLKMQLKSAQSEL 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 583 lcriAKETEEIKDLEQqlTDGQ-IAANEALKKDL---EGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQ 658
Cdd:pfam15921 709 ----EQTRNTLKSMEG--SDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907139925 659 QEKE----ELELIAMDAENMRKELAELESALQEqhevnASLQQAQ-GDLSAYETELETQLKLK 716
Cdd:pfam15921 783 TEKNkmagELEVLRSQERRLKEKVANMEVALDK-----ASLQFAEcQDIIQRQEQESVRLKLQ 840
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1424-1613 |
1.70e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1424 IECLEKTLLKRRSELREADRLLAEAENELActkektksAVEKFTDAKRNLLQ---TESDAEALEKRAQEtalnlvkAEQQ 1500
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELD--------ALQERREALQRLAEyswDEIDVASAEREIAE-------LEAE 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1501 LRLLQADAEDLEQHKIKQEEILKEINKVVAAKDAdfqcLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLR-ESETLLQ 1579
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlELRALLE 752
|
170 180 190
....*....|....*....|....*....|....*..
gi 1907139925 1580 AKRAEL---ETLKSQVTSQQQELAVLDSELGHRREEL 1613
Cdd:COG4913 753 ERFAAAlgdAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
269-822 |
1.71e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 269 LEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSLKEEAMLQKQSCEELESDLSTKKELLKQKTvELTRACQK 348
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 349 QYELEQELAFYK-----IDAKFEPLNYYPSEYAEIDKYPDESpyigKSRYKRNMFATETYIVSDAQAVQIRKMVPEGGql 423
Cdd:PRK03918 309 LREIEKRLSRLEeeingIEERIKELEEKEERLEELKKKLKEL----EKRLEELEERHELYEEAKAKKEELERLKKRLT-- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 424 rhehtpprvqappDLQLEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRl 503
Cdd:PRK03918 383 -------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 504 QHLNRLRQEALDLEiQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKHSHMKAqkrgkeqqldiMNRQYTQLESRLDEI- 582
Cdd:PRK03918 449 HRKELLEEYTAELK-RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE-----------LAEQLKELEEKLKKYn 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 583 LCRIAKETEEIKDLEQQLTDgqiaaneaLKKDLEGVISGLQEyLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEK- 661
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIK--------LKGEIKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGFESv 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 662 EELELIAMDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELEtqlkLKDAETSQLKQELEKLLRRTQLEQsvl 741
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELA----ETEKRLEELRKELEELEKKYSEEE--- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 742 QTELEKERESLRDALGKAqssEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVvdglihpEEVAARVDELRKRL 821
Cdd:PRK03918 661 YEELREEYLELSRELAGL---RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL-------EKALERVEELREKV 730
|
.
gi 1907139925 822 K 822
Cdd:PRK03918 731 K 731
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
437-704 |
2.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 437 DLQLEDTEKKISAAQTRLSELHHEIETAEQKVlratQEFKQLEEAIQqkkiSEAEKDLLLKQLSGRLQHLNRLRQEALDL 516
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAAL----EEFRQKNGLVD----LSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEIAEKHEEINTVQlatdsldpkdpkhshmkaqkrgKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDL 596
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELL----------------------QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIAL 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 597 EQQLtdgqiaanEALKKDLEgvisglqeylgtikgqaTQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRK 676
Cdd:COG3206 297 RAQI--------AALRAQLQ-----------------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
250 260
....*....|....*....|....*...
gi 1907139925 677 ELAELESALQEQHEVNASLQQAQGDLSA 704
Cdd:COG3206 352 ELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
1833-2044 |
2.09e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1833 SVRKLRQELEQLSQDKLALHSEVAEVQQQlQGKQEAINSLQeeldstqdhLDLAKQDLIHTTkCQNELLNEQTQLQEDIS 1912
Cdd:PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQ-QAAQERLLAAQ---------LDAAFRQGEHTG-LQLILSGEESQRGERIL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1913 KWM-----ARLESCQKETETKE---QQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLeKE 1984
Cdd:PRK11637 159 AYFgylnqARQETIAELKQTREelaAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL-SE 237
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1985 LTDQKSRLK-QLLTDVSAAEGRlgtLQEEERRIEGLERMLSQAKQ-----QLSEREQQLMAKSGEL 2044
Cdd:PRK11637 238 LRANESRLRdSIARAEREAKAR---AEREAREAARVRDKQKQAKRkgstyKPTESERSLMSRTGGL 300
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
561-1087 |
2.16e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 561 KEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQIAANEA---------LKKDLEGVISGLQEYLGTIKG 631
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaaRKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 632 QATQAQNECRKLQ----------DEKETLLQRL------TEVQQEKEELELIAMDAEN---------MRKELAELESALQ 686
Cdd:pfam01576 90 RSQQLQNEKKKMQqhiqdleeqlDEEEAARQKLqlekvtTEAKIKKLEEDILLLEDQNsklskerklLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 687 EQHEVNASLQQAQGDLSAYETELETQLKlkdaETSQLKQELEKLLRRTQLEQSVLQ---TELEKERESLRDALGKaqsse 763
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 764 eKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPEEVAARVDELRKRlklgagemrihspsdvLGKSLAD 843
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRD----------------LGEELEA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 844 LQKQFSEILARSQWEKEEAQVRERKLHE-EMALQQEKlangqeefrqaceRALEARIKFDKRQHNARIQQLENEIHYLQE 922
Cdd:pfam01576 304 LKTELEDTLDTTAAQQELRSKREQEVTElKKALEEET-------------RSHEAQLQEMRQKHTQALEELTEQLEQAKR 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 923 NLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLaAAELTIAKDQL 1002
Cdd:pfam01576 371 NKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKL-QSELESVSSLL 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1003 KSLHGTVVRINQERAE---ELQEAERFSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEI 1079
Cdd:pfam01576 450 NEAEGKNIKLSKDVSSlesQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDM 529
|
....*...
gi 1907139925 1080 EALNEAMA 1087
Cdd:pfam01576 530 KKKLEEDA 537
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
1562-2056 |
2.25e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 42.75 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1562 HSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQ---AKADLQEALTLGETEV 1638
Cdd:pfam05622 17 HELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQLQEENFRletARDDYRIKCEELEKEV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1639 AEKCSHIREVKSLLEELSFQKGELNV--HISEK----KTQLALIQQEMEK-----------EEKNLQVVLQQLSRHKTEL 1701
Cdd:pfam05622 97 LELQHRNEELTSLAEEAQALKDEMDIlrESSDKvkklEATVETYKKKLEDlgdlrrqvkllEERNAEYMQRTLQLEEELK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1702 KNVADILQLET--SELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQatqqqrrelERQRQLLERDR-RETERVRAES 1778
Cdd:pfam05622 177 KANALRGQLETykRQVQELHGKLSEESKKADKLEFEYKKLEEKLEALQK---------EKERLIIERDTlRETNEELRCA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1779 QALQSCVeclskekedlqGQCESWEKKSSHAQRVLAATEESNKMEQSnLGKLELSVRKLRQELEQLSQDKLAlhsevaEV 1858
Cdd:pfam05622 248 QLQQAEL-----------SQADALLSPSSDPGDNLAAEIMPAEIREK-LIRLQHENKMLRLGQEGSYRERLT------EL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1859 QQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCqnelLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDE 1938
Cdd:pfam05622 310 QQLLEDANRRKNELETQNRLANQRILELQQQVEELQKA----LQEQGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKKEQ 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1939 IRESKLRLDQQemMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKELTDQKSrLKQLLTDVSAAEGRL--GTLQEEERRI 2016
Cdd:pfam05622 386 IEELEPKQDSN--LAQKIDELQEALRKKDEDMKAMEERYKKYVEKAKSVIKT-LDPKQNPASPPEIQAlkNQLLEKDKKI 462
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1907139925 2017 EGLERMLSQAKQQlSEREQQLMAKS--GELLALQKEADDMRA 2056
Cdd:pfam05622 463 EHLERDFEKSKLQ-REQEEKLIVTAwyNMGMALHRKAIEERL 503
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1588-1808 |
2.29e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1588 LKSQVTSQQQELAVLDSELGHRREELLLLQDSL----AQAKADLQEALTLGETEVAEkcshIREVKSLLEELSFQKGELN 1663
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIeeqrKKNGENIARKQNKYDELVEE----AKTIKAEIEELTDELLNLV 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1664 V-------HISEKKTQLALIQQEME---KEEKNLQ------VVLQQLSRHKTELKNVADilqlETSELQglklqhdQKVV 1727
Cdd:PHA02562 248 MdiedpsaALNKLNTAAAKIKSKIEqfqKVIKMYEkggvcpTCTQQISEGPDRITKIKD----KLKELQ-------HSLE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1728 ELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSC-------VECLSKEKEDLQGQCE 1800
Cdd:PHA02562 317 KLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEfvdnaeeLAKLQDELDKIVKTKS 396
|
....*...
gi 1907139925 1801 SWEKKSSH 1808
Cdd:PHA02562 397 ELVKEKYH 404
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
787-1101 |
2.35e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 787 KKQLKEFQNHLNHVVDGLihpEEVAARVDELrkrlklgagEMRIHSPSDVLGKSLADLQKQfsEILARSQWEKEEAQVRE 866
Cdd:COG3096 298 RRQLAEEQYRLVEMAREL---EELSARESDL---------EQDYQAASDHLNLVQTALRQQ--EKIERYQEDLEELTERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 867 RKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENeIHYLQ--ENLKSMEKIQGLTDLQLQEADEE 944
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRA-IQYQQavQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 945 KERILAQLQELEkkkkrEDARSQEQFLGL--------DEELKSLKKAVAASDKLAAAE-----LTIAKDQlKSLHGTVVR 1011
Cdd:COG3096 443 LAAFRAKEQQAT-----EEVLELEQKLSVadaarrqfEKAYELVCKIAGEVERSQAWQtarelLRRYRSQ-QALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1012 INQE------RAEELQEAERFSRE-AMQAAKDLSRAEaEIELLQHLLREREGQFRDEMENADLGAKGANSQLLEIEALNE 1084
Cdd:COG3096 517 LRAQlaeleqRLRQQQNAERLLEEfCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIK 595
|
330
....*....|....*..
gi 1907139925 1085 AMAKQRAEITRLRDVLN 1101
Cdd:COG3096 596 ELAARAPAWLAAQDALE 612
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1322-1843 |
2.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1322 HNLENEVSRLEDIMQHLKSKQREErrqKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFIDGHV 1401
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKF---LTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1402 ENLMTEL-EIEKSLKHHEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDA 1480
Cdd:TIGR04523 197 LKLELLLsNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1481 EALEKRAQETalnlvkaEQQLRLLQADAEDLEQHkiKQEEILKEINKVVAAKDADFQCL-------NEKKEKLTEELQSL 1553
Cdd:TIGR04523 277 EQNNKKIKEL-------EKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIqnqisqnNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1554 QRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQD---SLAQAKADLQEA 1630
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEqikKLQQEKELLEKE 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1631 LTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQL 1710
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1711 ETSELQGLKLQHD-----QKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQ----RQLLERDRRETERVRAESQAL 1781
Cdd:TIGR04523 508 LEEKVKDLTKKISslkekIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEidekNKEIEELKQTQKSLKKKQEEK 587
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 1782 QSCVECLSKEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQ 1843
Cdd:TIGR04523 588 QELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
440-801 |
2.52e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 440 LEDTEKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAiqqkkiseaekdllLKQLSGRLQHLNRLRQEALdleiq 519
Cdd:pfam12128 613 LQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLD--------------LRRLFDEKQSEKDKKNKAL----- 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 520 mekqRKEIAEKHEEINTVQLATDSLdpkDPKHSHMKAQKRGKEQQLDIMNRQYTQlesrldeilcriakETEEIKDLEQQ 599
Cdd:pfam12128 674 ----AERKDSANERLNSLEAQLKQL---DKKHQAWLEEQKEQKREARTEKQAYWQ--------------VVEGALDAQLA 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 600 LTDGQIAANEALKKdlegvisglqeylGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDaenmRKELA 679
Cdd:pfam12128 733 LLKAAIAARRSGAK-------------AELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVR----RQEVL 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 680 ELESALQEQHEV-NASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLR--DAL 756
Cdd:pfam12128 796 RYFDWYQETWLQrRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSklATL 875
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1907139925 757 GKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVV 801
Cdd:pfam12128 876 KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVI 920
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
632-882 |
2.63e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 632 QATQAQNECRKLQDEKETLLQRLTEVQQEKEELELiamDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELET 711
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLK---QLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 712 QLKlkdaetsQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLK 791
Cdd:COG4942 98 ELE-------AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 792 EFQNHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdvlgKSLADLQKQFSEILARSQwEKEEAQVRERKLHE 871
Cdd:COG4942 171 AERAEL----------EALLAELEEERAALEALKAERQ---------KLLARLEKELAELAAELA-ELQQEAEELEALIA 230
|
250
....*....|.
gi 1907139925 872 EMALQQEKLAN 882
Cdd:COG4942 231 RLEAEAAAAAE 241
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1824-2095 |
2.64e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1824 QSNLGKLELSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNE 1903
Cdd:COG4372 51 REELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQ 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1904 QTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEK 1983
Cdd:COG4372 131 RKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIE 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1984 ELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRN 2063
Cdd:COG4372 211 SLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEE 290
|
250 260 270
....*....|....*....|....*....|..
gi 1907139925 2064 QFLTERKKAEKQVAGLKEALKIQRSQLEKNLL 2095
Cdd:COG4372 291 AALELKLLALLLNLAALSLIGALEDALLAALL 322
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1670-2044 |
2.72e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1670 KTQLALI--QQEMEKEEKNLQVVLQQ-------LSRHKTEL----KNVADI---LQLETSELQGLKLQHDQKVVE-LEKA 1732
Cdd:PRK11281 42 QAQLDALnkQKLLEAEDKLVQQDLEQtlalldkIDRQKEETeqlkQQLAQApakLRQAQAELEALKDDNDEETREtLSTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1733 QVDVLEEKLELENLQQATQQQrrELERQRQLLERDRRETERVRAE----SQALQSCVECLSKEKEDlqgqceswEKKSSH 1808
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQN--DLAEYNSQLVSLQTQPERAQAAlyanSQRLQQIRNLLKGGKVG--------GKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1809 AQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLALHseVAEVQQQLQGKQEAINS--------------LQE 1874
Cdd:PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAR--IQRLEHQLQLLQEAINSkrltlsektvqeaqSQD 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1875 ELDSTQDHLDLAK---------QDLIHTTkcqnELLNEQTQLQEDISKWMARLEscQKETETKEqQVQQLQDEIRESKLR 1945
Cdd:PRK11281 270 EAARIQANPLVAQeleinlqlsQRLLKAT----EKLNTLTQQNLRVKNWLDRLT--QSERNIKE-QISVLKGSLLLSRIL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1946 LDQQemmfQKLQKEREREEQKFEAGKVTLEQ----QQRQlekELTDQKSRLKQLLTD----VSAAEGRLGTLQEEERRiE 2017
Cdd:PRK11281 343 YQQQ----QALPSADLIEGLADRIADLRLEQfeinQQRD---ALFQPDAYIDKLEAGhkseVTDEVRDALLQLLDERR-E 414
|
410 420 430
....*....|....*....|....*....|...
gi 1907139925 2018 GLERMLSQAKQQLSE------REQQLMAKSGEL 2044
Cdd:PRK11281 415 LLDQLNKQLNNQLNLainlqlNQQQLLSVSDSL 447
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1432-1770 |
2.76e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1432 LKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETA--LNLV----KAEQQLRLLQ 1505
Cdd:COG3096 274 MRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASdhLNLVqtalRQQEKIERYQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1506 ADAEDLEQHKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHH---LQVLRESETLLQAKR 1582
Cdd:COG3096 354 EDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYqqaVQALEKARALCGLPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1583 AELETLKSQVTSQQQELAVLDSELGHRREELlllqdSLAQ-AKADLQEALTL-----GETEVAEKCSHIREvksLLEELS 1656
Cdd:COG3096 434 LTPENAEDYLAAFRAKEQQATEEVLELEQKL-----SVADaARRQFEKAYELvckiaGEVERSQAWQTARE---LLRRYR 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1657 FQKgelnvHISEKKTQLALIQQEMEK---EEKNLQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELekaq 1733
Cdd:COG3096 506 SQQ-----ALAQRLQQLRAQLAELEQrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEA---- 576
|
330 340 350
....*....|....*....|....*....|....*..
gi 1907139925 1734 vdvleeklelenlqqatQQQRRELERQRQLLERDRRE 1770
Cdd:COG3096 577 -----------------VEQRSELRQQLEQLRARIKE 596
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
514-730 |
2.81e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 514 LDLEI--QMEKQRKE-IAEKHEEINTVQLATDSLDPKdpkhshMKAQKRGKEQQLDIMNRQYTQLESRLDEILCriakET 590
Cdd:PHA02562 160 LDISVlsEMDKLNKDkIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQRKKNGENIARKQNKYDELVE----EA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQLTDgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKE--TLLQ-------RLTEVQQEK 661
Cdd:PHA02562 230 KTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRITKIKDKL 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 662 EELELIAMDAENMRKELAELESALQEQ----HEVNASLQQAQGDLSAYET----------ELETQLKLKDAETSQLKQEL 727
Cdd:PHA02562 309 KELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITLVDkakkvkaaieELQAEFVDNAEELAKLQDEL 388
|
...
gi 1907139925 728 EKL 730
Cdd:PHA02562 389 DKI 391
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1906-2040 |
2.81e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1906 QLQEDISKWMARLEscqKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAGKVTLEQQQRQLEKEL 1985
Cdd:PRK12704 61 EAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1907139925 1986 TDQKSRLKqlltdvsaaegRLGTLQEEERRIEGLERMLSQAKQQLSEREQQLMAK 2040
Cdd:PRK12704 138 EEQLQELE-----------RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEE 181
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1543-1997 |
2.92e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.73 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1543 KEKLTEELQSLQRDIKAAQhsedhhlqvLRESETLLQAKRAELETLKSQVTSQQQELAV-----LDSELghrREELLLLQ 1617
Cdd:PRK10929 25 EKQITQELEQAKAAKTPAQ---------AEIVEALQSALNWLEERKGSLERAKQYQQVIdnfpkLSAEL---RQQLNNER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1618 DSLAQAKADLQ-EALtlgETEVAEKCSHIREVKSLLEelsfQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSR 1696
Cdd:PRK10929 93 DEPRSVPPNMStDAL---EQEILQVSSQLLEKSRQAQ----QEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1697 HKTELKnvadilQLETSELQGLKLQHDQKVVELEKAQVdvleeklelenlqqaTQQQRRELERQRqlLERDRRETERVRA 1776
Cdd:PRK10929 166 PNTPLA------QAQLTALQAESAALKALVDELELAQL---------------SANNRQELARLR--SELAKKRSQQLDA 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1777 ESQALQSCVECLSKEKedlqgqceswekksshAQRVLAATE----ESNKMEQSNLGKLELSvRKLRQELEQLSQ--DKLA 1850
Cdd:PRK10929 223 YLQALRNQLNSQRQRE----------------AERALESTEllaeQSGDLPKSIVAQFKIN-RELSQALNQQAQrmDLIA 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1851 LHSEVAeVQQQLQGKQeAINSLQEeldstqdhldlakqdlihttkcQNELLNEQTQLQEDISKWMARLESCQKEtetkeq 1930
Cdd:PRK10929 286 SQQRQA-ASQTLQVRQ-ALNTLRE----------------------QSQWLGVSNALGEALRAQVARLPEMPKP------ 335
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1931 qvQQLQDEIRESKLRLDQQEMMFQKLQKEREreeQKFEAGKVTLEQQQRQLEKELTDQKSRLKQLLT 1997
Cdd:PRK10929 336 --QQLDTEMAQLRVQRLRYEDLLNKQPQLRQ---IRQADGQPLTAEQNRILDAQLRTQRELLNSLLS 397
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
655-771 |
3.11e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 655 TEVQQEKEELELIAMDAENMRKEL----AELESALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAE-TSQLKQELEK 729
Cdd:PRK00409 509 KLIGEDKEKLNELIASLEELERELeqkaEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQaIKEAKKEADE 588
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907139925 730 LLRRTQLEQSVLQT-----ELEKERESLRDALGKAQSSEEKQQENNE 771
Cdd:PRK00409 589 IIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQE 635
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
719-1118 |
3.15e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 719 ETSQLKQELEKLLRRTQLEqsvLQTELEkERESLRDALGKAQSSEEKQQEN--NELRTQLKQLQDDNSLLKKQLKEFQNH 796
Cdd:pfam15921 96 ESNELHEKQKFYLRQSVID---LQTKLQ-EMQMERDAMADIRRRESQSQEDlrNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 797 LNHVVDGLIHPEEVAARVDELRKRLKLGAGEmRIHSPSDVLGKSLADLQKQFSEILarsqwekeeaqvreRKLHEEMALQ 876
Cdd:pfam15921 172 IEQLRKMMLSHEGVLQEIRSILVDFEEASGK-KIYEHDSMSTMHFRSLGSAISKIL--------------RELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 877 QEKLANGQEEFrQACERALEARIKFDKRQHNARIQQLENEiHYLQenlksmekIQGLTDlQLQEADEEKERILAQLQELE 956
Cdd:pfam15921 237 KGRIFPVEDQL-EALKSESQNKIELLLQQHQDRIEQLISE-HEVE--------ITGLTE-KASSARSQANSIQSQLEIIQ 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 957 KKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAaaeltiaKDQLKSLHGTVVRINQERAEELQEAERFSREA------ 1030
Cdd:pfam15921 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEARTERDQFSQESgnlddq 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1031 -MQAAKDLSRAEAEIELlqhllrEREGQFRdeMENADLGakgaNSqlLEIEALNEAMAKQRAEITRLRDVLNLTGAGTKG 1109
Cdd:pfam15921 379 lQKLLADLHKREKELSL------EKEQNKR--LWDRDTG----NS--ITIDHLRRELDDRNMEVQRLEALLKAMKSECQG 444
|
....*....
gi 1907139925 1110 GIENVLEEI 1118
Cdd:pfam15921 445 QMERQMAAI 453
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
687-812 |
3.24e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 687 EQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQ 766
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907139925 767 QENNELRTQLKQLQDDNSLLKKQLKEfqnhlnhVVDglihPEEVAA 812
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLRE-------EVT----EEDIAE 519
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1318-1942 |
3.34e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1318 IPEHHNLENEVSRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVEELHRTIERHQQRKDFI 1397
Cdd:PRK01156 158 ILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1398 DGHVENLMTELEIEKSLkhhEDIVDEIECLEKTLLKRRSELREADRLLAEAENELACtkeKTKSAVEKFTDAKRNLLQTE 1477
Cdd:PRK01156 238 KSALNELSSLEDMKNRY---ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVY---KNRNYINDYFKYKNDIENKK 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1478 SDAEALEKRAQETALNLVKAEQqlrlLQADAEDLEQHKIKQEEILKEINKVVAAKDaDFQCLNEKKEKLTEELQSLQRDI 1557
Cdd:PRK01156 312 QILSNIDAEINKYHAIIKKLSV----LQKDYNDYIKKKSRYDDLNNQILELEGYEM-DYNSYLKSIESLKKKIEEYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1558 KAAQHSEDHHLQVLRESETLLQAKRAE----LETLKSQVTSQQQELAVLDSELGHRREELLLLQdslAQAKADLQeALTL 1633
Cdd:PRK01156 387 ERMSAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSVCPVC-GTTL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1634 GEtevaEKCSHIREvkslleelsfqkgelnvHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHKTELkNVADILQLETS 1713
Cdd:PRK01156 463 GE----EKSNHIIN-----------------HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL-ESEEINKSINE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1714 ELQGLKLQHDqkvveLEKAQVDVLEEKLELENLQQATQQQrreleRQRQLLERDRRETERVRAESQALQSCVECLSKEKE 1793
Cdd:PRK01156 521 YNKIESARAD-----LEDIKIKINELKDKHDKYEEIKNRY-----KSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSN 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1794 DLQGQCESWEKKSshaQRVLAATEESNKMEQSNLGKLELSVRKLRQELEQLSQDKLA---LHSEVAEVQQQLQGKQEAIN 1870
Cdd:PRK01156 591 EIKKQLNDLESRL---QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILiekLRGKIDNYKKQIAEIDSIIP 667
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907139925 1871 SLQE---ELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQD--EIRES 1942
Cdd:PRK01156 668 DLKEitsRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDlkRLREA 744
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
1824-1995 |
3.44e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 42.03 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1824 QSNLGKLELSVRKLRQELEQLSqdklALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTtkcqnellnE 1903
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQ----ALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARR---------R 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1904 QTQLQEDISKwmarlescqKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREeqkFEAGKVTLEQQQRQLEK 1983
Cdd:pfam00529 131 VLAPIGGISR---------ESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAE---VRSELSGAQLQIAEAEA 198
|
170
....*....|..
gi 1907139925 1984 ELTDQKSRLKQL 1995
Cdd:pfam00529 199 ELKLAKLDLERT 210
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
558-898 |
3.51e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 558 KRGKEQQLDIMNRQYTQLESRLDEIlcriAKETEEIKDLEQQLTDgQIAANEAL--KKDLEGVISGLQEYLGTIKGQATQ 635
Cdd:PRK04863 781 RAAREKRIEQLRAEREELAERYATL----SFDVQKLQRLHQAFSR-FIGSHLAVafEADPEAELRQLNRRRVELERALAD 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 636 AQNECRKLQDEKETLLQRLTEVQQEKEELELIamDAENMRKELAELESALQEQHEVNASLQQAQGDLSAYETELETqLKL 715
Cdd:PRK04863 856 HESQEQQQRSQLEQAKEGLSALNRLLPRLNLL--ADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV-LQS 932
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 716 KDAETSQLKQELEKLlrRTQLEQSVLQTELEKERESLRDALGKAQSSE--EKQQENNE-LRTQLKQLQDDNSLLKKQLKE 792
Cdd:PRK04863 933 DPEQFEQLKQDYQQA--QQTQRDAKQQAFALTEVVQRRAHFSYEDAAEmlAKNSDLNEkLRQRLEQAEQERTRAREQLRQ 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 793 FQNHL---NHVVDGLIHPEEVAAR-VDELRKRLKlgagEMRIHSPSDVLGKSLADlQKQFSEILARSQWEKEEAQVRERK 868
Cdd:PRK04863 1011 AQAQLaqyNQVLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTF 1085
|
330 340 350
....*....|....*....|....*....|
gi 1907139925 869 LHEEMALQQEKLANGQEEFRQACERALEAR 898
Cdd:PRK04863 1086 CEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
610-768 |
3.75e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 41.72 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 610 ALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQH 689
Cdd:pfam15905 177 AKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKN 256
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 690 EVNASLQQaqgDLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDalgKAQSSEEKQQE 768
Cdd:pfam15905 257 DEIESLKQ---SLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTL---EEQEHQKLQQK 329
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
441-538 |
4.06e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 441 EDTEKKISAAQTRLSELHHEIET-AEQKVLRATQEFKQlEEAIQQKKISEAEKDLLLK--QLSGRLQHLNRLRQEALDLE 517
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLeAKEEIHKLRNEFEK-ELRERRNELQKLEKRLLQKeeNLDRKLELLEKREEELEKKE 116
|
90 100
....*....|....*....|.
gi 1907139925 518 IQMEKQRKEIAEKHEEINTVQ 538
Cdd:PRK12704 117 KELEQKQQELEKKEEELEELI 137
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1531-2074 |
4.11e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1531 AKDADFQCLNEKKEKLTEELQSLQRdiKAAQHSEDHH-LQVLRESETLLQAkraELETLKSQVTSQQQELAVLDSELGHR 1609
Cdd:pfam01576 9 AKEEELQKVKERQQKAESELKELEK--KHQQLCEEKNaLQEQLQAETELCA---EAEEMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1610 REELLLLQDSLAQAKADLQEALTLGETEVAEkcshirevksllEELSFQKGELNVHISEKKtqlaliqqeMEKEEKNLQV 1689
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQDLEEQLDE------------EEAARQKLQLEKVTTEAK---------IKKLEEDILL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1690 VLQQLSRHKTELKnvadILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRR 1769
Cdd:pfam01576 143 LEDQNSKLSKERK----LLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGEST 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1770 ETERVRAESQA-LQSCVECLSKEKEDLQ----------GQCESWEKKSSHAQRVLAATEESNKMEQSNLGKLELSVRKLR 1838
Cdd:pfam01576 219 DLQEQIAELQAqIAELRAQLAKKEEELQaalarleeetAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLG 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1839 QELEQL-------------------------SQDKLALHSEVAEVQQQLQGKQEAINSLQEELdstQDHLDLAKQDLIHT 1893
Cdd:pfam01576 299 EELEALkteledtldttaaqqelrskreqevTELKKALEEETRSHEAQLQEMRQKHTQALEEL---TEQLEQAKRNKANL 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1894 TKCQNELLNEQTQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKERER-----EEQKFE 1968
Cdd:pfam01576 376 EKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESvssllNEAEGK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1969 AGKVTLE--------QQQRQLEKELTDQK----SRLKQLLTDVSAAEGRLgtlQEEERRIEGLERMLSQAKQQLSEREQQ 2036
Cdd:pfam01576 456 NIKLSKDvsslesqlQDTQELLQEETRQKlnlsTRLRQLEDERNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKK 532
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907139925 2037 LMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEK 2074
Cdd:pfam01576 533 LEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDK 570
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
1905-2052 |
4.19e-03 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 41.06 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1905 TQLQEDISKWMARLESCQKETETKEQQVQQLQDEIRESKLRL-------DQQEMMFQKLQKEREREEQKFEagkvTLEQQ 1977
Cdd:pfam11932 16 DQALDLAEKAVAAAAQSQKKIDKWDDEKQELLAEYRALKAELeslevynRQLERLVASQEQEIASLERQIE----EIERT 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1978 QRQLEKELTDQKSRLKQLLtdvsaaEGRLGTLQEE-ERRIEGLERMLSQAKQQLSEREQQLMAksgellALQKEAD 2052
Cdd:pfam11932 92 ERELVPLMLKMLDRLEQFV------ALDLPFLLEErQARLARLRELMDDADVSLAEKYRRILE------AYQVEAE 155
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1422-1837 |
4.34e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1422 DEIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEAlekraQETALNLVKAEQQL 1501
Cdd:TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE-----QETLLGTIMPEEES 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1502 -RLLQADAEDLEQHKIKQEEILKEINKVVAAKDA-----DFQCLNEKKEKLTEELQSLQRDIKAAQHSedhhLQVLRESE 1575
Cdd:TIGR00606 784 aKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVVSKIELNRKL----IQDQQEQI 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1576 TLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIR----EVKSL 1651
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISsketSNKKA 939
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1652 LEELSFQKGELNVHISEKKTQLALIQQEMEKeeknlqvvlqQLSRHKTELKNVadILQLETSELQGLKLQHDQKVVELEK 1731
Cdd:TIGR00606 940 QDKVNDIKEKVKNIHGYMKDIENKIQDGKDD----------YLKQKETELNTV--NAQLEECEKHQEKINEDMRLMRQDI 1007
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1732 AQVDVLEEKLELENLQQATQQQRRELERQRQ--LLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHA 1809
Cdd:TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKqhLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087
|
410 420
....*....|....*....|....*...
gi 1907139925 1810 QRVLAATEESNKMEQSNLGKLELSVRKL 1837
Cdd:TIGR00606 1088 KKELREPQFRDAEEKYREMMIVMRTTEL 1115
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
85-238 |
4.58e-03 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 41.70 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 85 EALIKKLTKQDNLALVKSLNLSLSKDGGKKFryIENLEKCVKLEVLNLSYNLIVK--IEKVDKLLR----LRELNLSYNK 158
Cdd:COG5238 198 EELAEALTQNTTVTTLWLKRNPIGDEGAEIL--AEALKGNKSLTTLDLSNNQIGDegVIALAEALKnnttVETLYLSGNQ 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 159 ISK------IEGLENMCNLQKLNLAGNEI-EHIPVWFAKKL---KSLRVLNLKGNKISSLQDVSKLKPLQD---LTSLVL 225
Cdd:COG5238 276 IGAegaialAKALQGNTTLTSLDLSVNRIgDEGAIALAEGLqgnKTLHTLNLAYNGIGAQGAIALAKALQEnttLHSLDL 355
|
170
....*....|....*...
gi 1907139925 226 IDNP-----VVALPHYLQ 238
Cdd:COG5238 356 SDNQigdegAIALAKYLE 373
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1955-2094 |
4.86e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1955 KLQKEREREEQKFEAgKVTLEQQQRQLEKELTDQKSRLKQLltdvsaaegrlgtlqeeERRIEGLERMLSQAKQQLSERE 2034
Cdd:PRK12704 48 KKEAEAIKKEALLEA-KEEIHKLRNEFEKELRERRNELQKL-----------------EKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 2035 QQLMAKSGELLALQKEADDMRADFSLLRNQfltERKKAEKqVAGL--KEALKIQRSQLEKNL 2094
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEE---QLQELER-ISGLtaEEAKEILLEKVEEEA 167
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1842-2093 |
4.87e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1842 EQLSQDKLALHSEVAEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMARLESC 1921
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1922 QKETETKEQQVQQLQDEIRESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtLEQQQRQLEKELTDQKSRLKQLLTDVSA 2001
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQ----LEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 2002 AEGRLGTLQEEERRIEgLERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRADFSLLRNQFLTERKKAEKQVAGLKE 2081
Cdd:COG4372 162 LQEELAALEQELQALS-EAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLD 240
|
250
....*....|..
gi 1907139925 2082 ALKIQRSQLEKN 2093
Cdd:COG4372 241 ALELEEDKEELL 252
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
904-1629 |
5.65e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 904 RQHNARIQQLENEIHYLQENLKSMEKIQ--------GLTDLQLQEADEEKERiLAQLQELEKKKKREDARSQEQFLGLDE 975
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEFNTLESAElrlshlhfGYKSDETLIASRQEER-QETSAELNQLLRTLDDQWKEKRDELNG 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 976 ELKSLKKAVAAsdklAAAELTIAKDQLKslhgtvvRINQERAEEL-QEAERfsreAMQAAKDLSRAEAEIELLQHLLRER 1054
Cdd:pfam12128 309 ELSAADAAVAK----DRSELEALEDQHG-------AFLDADIETAaADQEQ----LPSWQSELENLEERLKALTGKHQDV 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1055 EGQFRDEMENADLGAKGansqllEIEALNEAMAKQRAEITRLRDVlnltgagtkggIENVLEEI-AELRHAVSAQNEYIS 1133
Cdd:pfam12128 374 TAKYNRRRSKIKEQNNR------DIAGIKDKLAKIREARDRQLAV-----------AEDDLQALeSELREQLEAGKLEFN 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1134 SMADPFR-RQGWWYFMPPAPSSKVSSHSSQATKDSGLGLKYTASTPLRKPQPGQQEEkdssgplpasgywvyspiRSTLH 1212
Cdd:pfam12128 437 EEEYRLKsRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSE------------------LRQAR 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1213 KSFSKREDA--DSGGDSQEESGLDDQEEPPFVPPPGYIMYTVLPDGSPVPQGVA-LYAPSPPLPNSSHPltpgtVVYGPP 1289
Cdd:pfam12128 499 KRRDQASEAlrQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGkVISPELLHRTDLDP-----EVWDGS 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1290 PAGAPIIYGpppanfavplVPAGVQHCNIPEHHNLENEV-SRLEDIMQHLKSKQREERRQKASTQHSEEEVDGLHRDIDD 1368
Cdd:pfam12128 574 VGGELNLYG----------VKLDLKRIDVPEWAASEEELrERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1369 LLQEKKeleleveelhrtierhQQRKDFIDGHVENLMTELEIEKSLKHHEDIVDE-IECLEKTLLKRRSELREADRLLAE 1447
Cdd:pfam12128 644 ARTALK----------------NARLDLRRLFDEKQSEKDKKNKALAERKDSANErLNSLEAQLKQLDKKHQAWLEEQKE 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1448 AENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETAL----------------NLVKAEQQLRLLQADAEDL 1511
Cdd:pfam12128 708 QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALetwykrdlaslgvdpdVIAKLKREIRTLERKIERI 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1512 EQ--------HKIKQEEILKEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQ---HSEDHHLQVLRESETLLQA 1580
Cdd:pfam12128 788 AVrrqevlryFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEmerKASEKQQVRLSENLRGLRC 867
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1907139925 1581 KRAELETLKSQVTSQQqelavLDSELGHRREELLLLQDSLAQAKADLQE 1629
Cdd:pfam12128 868 EMSKLATLKEDANSEQ-----AQGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1564-1867 |
5.68e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.06 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1564 EDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHrreelllLQDSLAQAKADLQEALTLGETEVAEkcs 1643
Cdd:pfam00038 35 SELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDN-------LRLAAEDFRQKYEDELNLRTSAEND--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1644 hIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKNLQVVLQQLSRHkTELKNVAdilQLE-TSELQGLKLQH 1722
Cdd:pfam00038 105 -LVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVN-VEMDAAR---KLDlTSALAEIRAQY 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1723 DQKVvelekaqvdvleekleLENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESW 1802
Cdd:pfam00038 180 EEIA----------------AKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASL 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907139925 1803 EKKsshaqrvLAATEESNKME----QSNLGKLELSVRKLRQELEQLSQD-------KLALHSEVAEVQQQLQGKQE 1867
Cdd:pfam00038 244 ERQ-------LAETEERYELQladyQELISELEAELQETRQEMARQLREyqellnvKLALDIEIATYRKLLEGEEC 312
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1480-2096 |
5.72e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.66 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1480 AEALEKRAQEtalnLVKAEQQLRLLQadaEDLEQHKIKQEEILKEINKVVAAKDADfQCLNEKKEKLTEELQSLQRDIKA 1559
Cdd:pfam07111 65 AELISRQLQE----LRRLEEEVRLLR---ETSLQQKMRLEAQAMELDALAVAEKAG-QAEAEGLRAALAGAEMVRKNLEE 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1560 AQHSEDHHLQVLRESE--TLLQAKRAELETLKSQVTSQQQELAVLDS-------ELGHRREELLLLQDSLAQAKADLQEA 1630
Cdd:pfam07111 137 GSQRELEEIQRLHQEQlsSLTQAHEEALSSLTSKAEGLEKSLNSLETkrageakQLAEAQKEAELLRKQLSKTQEELEAQ 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1631 LTLGETevaekcshirevkslLEELSFQKGELNVHisekktqlaliQQEMEKEEKNLQVVLQQLSRHKTELKNVADILQL 1710
Cdd:pfam07111 217 VTLVES---------------LRKYVGEQVPPEVH-----------SQTWELERQELLDTMQHLQEDRADLQATVELLQV 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1711 ETSEL-QGLKLQHDQKVVELEKAQVdvleekleleNLQQATQQQRRELERQRqllERDRRETERVRAESQALQSCVECLS 1789
Cdd:pfam07111 271 RVQSLtHMLALQEEELTRKIQPSDS----------LEPEFPKKCRSLLNRWR---EKVFALMVQLKAQDLEHRDSVKQLR 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1790 KEKEDLQGQCESWEKKSSHAQRVLAATEESNKMEQsnlgkleLSVRKLRQELEQLSQDKLALHSEVAEVQQQLQGKQEAI 1869
Cdd:pfam07111 338 GQVAELQEQVTSQSQEQAILQRALQDKAAEVEVER-------MSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAM 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1870 NSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQTQLQEDISKWMA----RLESCQKETETK--EQQVQQLQDEIRESK 1943
Cdd:pfam07111 411 SSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAlaqlRQESCPPPPPAPpvDADLSLELEQLREER 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1944 LRLDQQEMMFQKL-QKEREREEQKFEAGKVTLEQQQRQLEKEL------------------------TDQKSRLKQLLTD 1998
Cdd:pfam07111 491 NRLDAELQLSAHLiQQEVGRAREQGEAERQQLSEVAQQLEQELqraqeslasvgqqlevarqgqqesTEEAASLRQELTQ 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1999 VSAAEGRlgTLQEEERRIEG-LERMLSQAKQQLSEREQQLMAKSGELLALQKEADDMRAdfsllRNQFLTERKKAEKQVA 2077
Cdd:pfam07111 571 QQEIYGQ--ALQEKVAEVETrLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKE-----RNQELRRLQDEARKEE 643
|
650
....*....|....*....
gi 1907139925 2078 GLKEALKIQRSQLEKNLLL 2096
Cdd:pfam07111 644 GQRLARRVQELERDKNLML 662
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1447-1764 |
5.84e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 5.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1447 EAENELACTKEKTKSAVEKFTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQLRLLQADAEDLEQHKIKQEEILKEIN 1526
Cdd:COG4372 14 SLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1527 KVVAAKDADFQCLNEKKEKLTEELQSLQRDIKAAQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSEL 1606
Cdd:COG4372 94 AELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1607 ghRREELLLLQDSLAQAKADLQEALTLGETEVAEKCSHIREVKSLLEELSFQKGELNVHISEKKTQLALIQQEMEKEEKN 1686
Cdd:COG4372 174 --QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 1687 LQVVLQQLSRHKTELKNVADILQLETSELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRELERQRQLL 1764
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
517-917 |
6.39e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 517 EIQMEKQRKEI-----AEKHEEINTVQLATDSLDPKDpkhshmKAQKRGKEQQLDIMNrqYTQLESRLDEilcRIAKETE 591
Cdd:PRK10929 25 EKQITQELEQAkaaktPAQAEIVEALQSALNWLEERK------GSLERAKQYQQVIDN--FPKLSAELRQ---QLNNERD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 592 EIKDLEQQLTdgqiaaNEALKKDLEGVISGLQEylgtIKGQATQAQNECRKLQDEKETLLQRLTEVqqekeeleliamda 671
Cdd:PRK10929 94 EPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA-------------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 672 enmRKELAELESALQEQHEVNASLQQAQgdLSAYETELETQ-LKLKDAETSQL----KQELEKLlrRTQLEQSVLQtELE 746
Cdd:PRK10929 150 ---RRQLNEIERRLQTLGTPNTPLAQAQ--LTALQAESAALkALVDELELAQLsannRQELARL--RSELAKKRSQ-QLD 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 747 KERESLRDALG-KAQSSEEKQQENNELRTqlKQLQDDNSLLKKQLK---EFQNHLNHVVD--GLIHPEEVAARVDELRKR 820
Cdd:PRK10929 222 AYLQALRNQLNsQRQREAERALESTELLA--EQSGDLPKSIVAQFKinrELSQALNQQAQrmDLIASQQRQAASQTLQVR 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 821 LKLGAgeMRIHSP----SDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLH-EEMALQQEKLA----NGQEEFRQAC 891
Cdd:PRK10929 300 QALNT--LREQSQwlgvSNALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRyEDLLNKQPQLRqirqADGQPLTAEQ 377
|
410 420
....*....|....*....|....*.
gi 1907139925 892 ERALEARIKFDKRQHNARIQQLENEI 917
Cdd:PRK10929 378 NRILDAQLRTQRELLNSLLSGGDTLI 403
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
842-960 |
6.62e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 842 ADLQKQfsEILARSQWEKEEAQVRE-RKLHEEMALQQEKLangQEEFRQACERAlearikfdKRQHNARIQQLENEIHYL 920
Cdd:PRK00409 523 ASLEEL--ERELEQKAEEAEALLKEaEKLKEELEEKKEKL---QEEEDKLLEEA--------EKEAQQAIKEAKKEADEI 589
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1907139925 921 QENLKSMEKiQGLTDLQLQEADEEKERILAQLQELEKKKK 960
Cdd:PRK00409 590 IKELRQLQK-GGYASVKAHELIEARKRLNKANEKKEKKKK 628
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
589-982 |
7.24e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 41.20 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 589 ETEEIKDLEQQLTDGQIAANEALKK---------DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQ 659
Cdd:pfam15742 11 QQEEVQQLRQNLQRLQILCTSAEKElryergknlDLKQHNSLLQEENIKIKAELKQAQQKLLDSTKMCSSLTAEWKHCQQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 660 EKEELELiamdaenmrkELAELESALQEQHEVNASLQQAQGDLSAYETE-LETQLKLKDAetSQLKQELEKLLRRTQLEq 738
Cdd:pfam15742 91 KIRELEL----------EVLKQAQSIKSQNSLQEKLAQEKSRVADAEEKiLELQQKLEHA--HKVCLTDTCILEKKQLE- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 739 svlqtelEKERESLRD-ALGKAQSSEEKQ------QENNELRTQLKQLQDDNSLLKKQLKEFQNhlnhvvdglihpeeva 811
Cdd:pfam15742 158 -------ERIKEASENeAKLKQQYQEEQQkrklldQNVNELQQQVRSLQDKEAQLEMTNSQQQL---------------- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 812 aRVDELRKRLKLGAGEMRIhspSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFRQAC 891
Cdd:pfam15742 215 -RIQQQEAQLKQLENEKRK---SDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQLDVHVRKYNEKHHHHKAKLRRAK 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 892 ERALEarikfDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQL---QELEKKKKREDARSQE 968
Cdd:pfam15742 291 DRLVH-----EVEQRDERIKQLENEIGILQQQSEKEKAFQKQVTAQNEILLLEKRKLLEQLteqEELIKNNKRTISSVQN 365
|
410
....*....|....
gi 1907139925 969 QFLGLDEELKSLKK 982
Cdd:pfam15742 366 RVNFLDEENKQLQE 379
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
591-687 |
7.88e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 591 EEIKDLEQQLTDGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMD 670
Cdd:COG0542 411 EELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGK 486
|
90
....*....|....*..
gi 1907139925 671 AENMRKELAELESALQE 687
Cdd:COG0542 487 IPELEKELAELEEELAE 503
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
437-798 |
8.15e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 437 DLQLEDTEKkiSAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHL-NRLRQEALD 515
Cdd:PRK04778 85 EEQLFEAEE--LNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELrKSLLANRFS 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 516 LEIQMEKQRKEIAEKHEEINTVQLATDSLDpkdpkhsHMKAQKrgkeqQLDIMNRQYTQLEsrldeilcriaKETEEIKD 595
Cdd:PRK04778 163 FGPALDELEKQLENLEEEFSQFVELTESGD-------YVEARE-----ILDQLEEELAALE-----------QIMEEIPE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 596 LEQQLTDgqiaanealkkdlegvisglqeylgTIKGQATQAQNECRKLQDEK-----ETLLQRLTEVQQEKEELE--LIA 668
Cdd:PRK04778 220 LLKELQT-------------------------ELPDQLQELKAGYRELVEEGyhldhLDIEKEIQDLKEQIDENLalLEE 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 669 MDAENMRKELAELESALQE-----QHEVNA--SLQQAQGDLSAYETELETQLKlkdaetsQLKQELEKLLRRTQLEQSVL 741
Cdd:PRK04778 275 LDLDEAEEKNEEIQERIDQlydilEREVKArkYVEKNSDTLPDFLEHAKEQNK-------ELKEEIDRVKQSYTLNESEL 347
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 742 QT--ELEKERESLRDALGK-AQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLN 798
Cdd:PRK04778 348 ESvrQLEKQLESLEKQYDEiTERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1748-2073 |
8.36e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1748 QATQQQRRELERQRQLLERDRRETERVRAESQALQSCVEC---LSKEKEDLQGQCESWEKKSSHAQRVLAATEEsnkmEQ 1824
Cdd:TIGR00606 196 QTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESsreIVKSYENELDPLKNRLKEIEHNLSKIMKLDN----EI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1825 SNLGKLELSVRKLRQELEQLSQDKLALHSEvaEVQQQLQGKQEAINSLQEELDSTQDHLDLAKQDLIHTTKCQNELLNEQ 1904
Cdd:TIGR00606 272 KALKSRKKQMEKDNSELELKMEKVFQGTDE--QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQ 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1905 TQLQediskWMARLESCQKETETKEQQVQQLQDEIR--ESKLRLDQQEMMFQKLQKEREREEQKFEAgkvtleqqqrQLE 1982
Cdd:TIGR00606 350 GRLQ-----LQADRHQEHIRARDSLIQSLATRLELDgfERGPFSERQIKNFHTLVIERQEDEAKTAA----------QLC 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1983 KELTDQKSRLKQLLTDVSAAEGRLGTLQEEERRIegLERMLSQAKQQLSEReQQLMAKSGELLALQKEADDMRADFSLLR 2062
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI--LEKKQEELKFVIKEL-QQLEGSSDRILELDQELRKAERELSKAE 491
|
330
....*....|.
gi 1907139925 2063 NQFLTERKKAE 2073
Cdd:TIGR00606 492 KNSLTETLKKE 502
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
621-1052 |
8.63e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.11 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 621 GLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQEQHEVNASLQQAQG 700
Cdd:COG4995 14 LAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 701 DLSAYETELETQLKLKDAETSQLKQELEKLLRRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQ 780
Cdd:COG4995 94 LALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 781 DDNSLLKKQLKEFQNHLNHVV----DGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQ 856
Cdd:COG4995 174 AAALALLALLLAALAAALAAAaaalALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 857 WEKEEAQVRERKLHEEMALQQEKLANGQEEFRQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDL 936
Cdd:COG4995 254 AAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 937 QLQEADEEKERILAQLQELEKKKKREDARSQEQFLGLDEELKSLKKAVAASDKLAAAELTIAKDQLKSLHGTVVRINQER 1016
Cdd:COG4995 334 ALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1907139925 1017 AEELQEAERFSREAMQAAKDL--------SRAEAEIELLQHLLR 1052
Cdd:COG4995 414 AALALLLALAAYAAARLALLAlieyiilpDRLYAFVQLYQLLIA 457
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
574-740 |
8.65e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 574 QLESRLDEILCRIAKETEEIKDLEQQLtdgqiaanealkKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQR 653
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDEL------------AALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 654 LTEVQQEKEeLELIAMDAENMRKELAELESALQEQHE----VNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEK 729
Cdd:COG1579 82 LGNVRNNKE-YEALQKEIESLKRRISDLEDEILELMErieeLEEELAELEAELAELEAELEEKKAELDEELAELEAELEE 160
|
170
....*....|..
gi 1907139925 730 LL-RRTQLEQSV 740
Cdd:COG1579 161 LEaEREELAAKI 172
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
444-1063 |
8.70e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 8.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 444 EKKISAAQTRLSELHHEIETAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHL----------------- 506
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELeeilhelesrleeeeer 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 507 -NRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATDSLDPKDPKhshMKAQKRGKEQQLDIMNRQYTQLESRLDEILCR 585
Cdd:pfam01576 91 sQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKK---LEEDILLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 586 IAKETEEIKDL-------EQQLTDGQIAAN---------EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKET 649
Cdd:pfam01576 168 LAEEEEKAKSLsklknkhEAMISDLEERLKkeekgrqelEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 650 LLQRLTEVQQEKEELELIAMDAENMRKELAE-LESALQEQHEVNASLQQAQGDLSAYETELETQLklkdaETSQLKQELe 728
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTELEDTL-----DTTAAQQEL- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 729 kllrRTQLEQSVLQTELEKERESLRDALGKAQSSEEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHLNHVVDGLIHPE 808
Cdd:pfam01576 322 ----RSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQ 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 809 EVAARVDELRKRLKLGAGEMRI-HSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLAN----G 883
Cdd:pfam01576 398 QAKQDSEHKRKKLEGQLQELQArLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDtqelL 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 884 QEEFRQacERALEARIKFDKRQHNARIQQLENEihylQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKKRED 963
Cdd:pfam01576 478 QEETRQ--KLNLSTRLRQLEDERNSLQEQLEEE----EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQ 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 964 ARSQEQFLGLDEELKSLKKAVAASDKLAAA--ELTIAKDQLKSLHGTVVR--------------INQERAEELQEAERFS 1027
Cdd:pfam01576 552 RELEALTQQLEEKAAAYDKLEKTKNRLQQEldDLLVDLDHQRQLVSNLEKkqkkfdqmlaeekaISARYAEERDRAEAEA 631
|
650 660 670
....*....|....*....|....*....|....*.
gi 1907139925 1028 REAMQAAKDLSRAEAEIELLQHLLREREGQFRDEME 1063
Cdd:pfam01576 632 REKETRALSLARALEEALEAKEELERTNKQLRAEME 667
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-687 |
8.81e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 245 RSLESLEGQPVTTQDRQEAFERfSLEEIERLEKDLEKKTVETEELKNKQTKFLEEIKNQDKLNKSL----KEEAML--QK 318
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreieKRLSRLeeEI 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 319 QSCEELESDLSTKKELLKQKTVELTRACQKQYELEQ-ELAFYKIDAKFEPLNYYPSEYA--EIDKYPDESPYIGKSRYK- 394
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKKRLTglTPEKLEKELEELEKAKEEi 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 395 -------RNMFATETYIVSDAQAVQI-----RKMVPEGGQLRHEHTPPRVQAPPDLQLEDTEKKISAAQTRLSELHHEIE 462
Cdd:PRK03918 404 eeeiskiTARIGELKKEIKELKKAIEelkkaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 463 TAEQKVLRATQEFKQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEKHEEINTVQLATD 542
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 543 SLDPKDPKHSHMKAQKR-----------GKEQQLDIMNRQYTQL---ESRLDEILCRIAKETEEIKDLEQQLTDGQIAAN 608
Cdd:PRK03918 564 KLDELEEELAELLKELEelgfesveeleERLKELEPFYNEYLELkdaEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907139925 609 EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELAELESALQE 687
Cdd:PRK03918 644 ELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
451-797 |
8.83e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 451 QTRLSELHHEIETAEQKVLRATQEFKQLEEAIqqkkiseaekDLLLKQLSGRLQHLNRLRQEALDLEIQMEKQRKEIAEK 530
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQW----------ERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 531 HEEIntvqlaTDSLDPKDPKHSHMKAQKRGKEQQLDIMNRQYTQLESRLDEILCRIAKETEEIKDLEQQLTDGQiAANEA 610
Cdd:pfam07888 110 SEEL------SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ-AKLQQ 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 611 LKKDLEGVISGLQEYLGTIKGQATQAQnecrKLQDEKETLLQRLTEVQQEKEELELIAMDAENMRKELA----------- 679
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVL----QLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNaserkveglge 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 680 ELESALQEQHEVNASLQQAQGDLSAYETEL-ETQLKLKD-----------------------AETSQLKQELEKLLRRTQ 735
Cdd:pfam07888 259 ELSSMAAQRDRTQAELHQARLQAAQLTLQLaDASLALREgrarwaqeretlqqsaeadkdriEKLSAELQRLEERLQEER 338
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907139925 736 LEQSVLQTELEKERESLRDALGkaqsseEKQQENNELRTQLKQLQDDNSLLKKQLKEFQNHL 797
Cdd:pfam07888 339 MEREKLEVELGREKDCNRVQLS------ESRRELQELKASLRVAQKEKEQLQAEKQELLEYI 394
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-989 |
9.08e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 298 EEIKNQDKLNKSLKEEAMLQKQSCEELESDLSTKKELLKQKTVELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 378 IDKypdESPYIGKSRYKRNMFATEtyIVSDAQAVQIRKMvpeggQLRHEHtpprvqappDLQLEDTEKKISaaqtrlSEL 457
Cdd:COG5022 890 DVK---SISSLKLVNLELESEIIE--LKKSLSSDLIENL-----EFKTEL---------IARLKKLLNNID------LEE 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 458 HHEIETAEQKVLRATQEF-KQLEEAIQQKKISEAEKDLLLKQLSGRLQHLNRLRQEAldLEIQMEKQRKEIAEKHEEINT 536
Cdd:COG5022 945 GPSIEYVKLPELNKLHEVeSKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL--AELSKQYGALQESTKQLKELP 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 537 VQLATDSLDPKDPKHSHMKAQKRGKEQQLDIMN-RQYTQLESRLDEILCRIAKETEEIKDLEQQL-TDGQIAANEALKKD 614
Cdd:COG5022 1023 VEVAELQSASKIISSESTELSILKPLQKLKGLLlLENNQLQARYKALKLRRENSLLDDKQLYQLEsTENLLKTINVKDLE 1102
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 615 LEGVIS-GLQEYLGTIKGQATQAQNecrkLQDEKETLLQRLTEVQQEKEELELIAMDAENMrKELAELESALQEQHEVNA 693
Cdd:COG5022 1103 VTNRNLvKPANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGL-FWEANLEALPSPPPFAAL 1177
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 694 SlQQAQGDLSAYETEletqLKLKDAETSQLKQELEKLLRR--TQLEQSVLQTELEKE-------RESLRDALGKAQSSEE 764
Cdd:COG5022 1178 S-EKRLYQSALYDEK----SKLSSSEVNDLKNELIALFSKifSGWPRGDKLKKLISEgwvpteySTSLKGFNNLNKKFDT 1252
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 765 KQQENNE-LRTQLKQLQDDNSLLKKQlkefqnhlnhvvdglihPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLAD 843
Cdd:COG5022 1253 PASMSNEkLLSLLNSIDNLLSSYKLE-----------------EEVLPATINSLLQYINVGLFNALRTKASSLRWKSATE 1315
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 844 LQKQFSEIlarSQWEKeEAQVRERKLHEEMALQQEKL-------ANGQEEFRQACERALEARIKFDKRQHnariQQLENE 916
Cdd:COG5022 1316 VNYNSEEL---DDWCR-EFEISDVDEELEELIQAVKVlqllkddLNKLDELLDACYSLNPAEIQNLKSRY----DPADKE 1387
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907139925 917 IHYLQENLKSMEKIqgLTDLQLQEADEEKERILAQLQELEKKKKRE-----DARSQEQFLGLDEELKSLKKAVAASDK 989
Cdd:COG5022 1388 NNLPKEILKKIEAL--LIKQELQLSLEGKDETEVHLSEIFSEEKSLisldrNSIYKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1574-1828 |
9.70e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1574 SETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREELLLLQDSLAQAKADLQEAltlgETEVAEKCSHIREVKSLLE 1653
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1654 EL---SFQKGELNVHISekktqlALIQQEmekeekNLQVVLQQLSRHKTELKNVADILQletsELQGLKLQHDQKVVELE 1730
Cdd:COG3883 90 ERaraLYRSGGSVSYLD------VLLGSE------SFSDFLDRLSALSKIADADADLLE----ELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1731 KAQVDVLEEKLELENLQQATQQQRRELERQRQLLERDRRETERVRAESQALQSCVECLSKEKEDLQGQCESWEKKSSHAQ 1810
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|....*...
gi 1907139925 1811 RVLAATEESNKMEQSNLG 1828
Cdd:COG3883 234 AAAAAAAAAAASAAGAGA 251
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1343-1766 |
9.83e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 9.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1343 REERRQKASTQHSEEEVDGLHRDIDDLLQEKKELELEVeelhRTIERHQQRKDFIDGHVENLMTELEIEKSLKHHEDIVD 1422
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL----EELREELEKLEKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1423 EIECLEKTLLKRRSELREADRLLAEAENELACTKEKTKSAVEK-FTDAKRNLLQTESDAEALEKRAQETALNLVKAEQQL 1501
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1502 RLLQADAEDLE-QHKIKQEEIL---------------------KEINKVVAAKDADFQCLNEKKEKLTEELQSLQRDIKA 1559
Cdd:COG4717 230 EQLENELEAAAlEERLKEARLLlliaaallallglggsllsliLTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1560 AQHSEDHHLQVLRESETLLQAKRAELETLKSQVTSQQQELAVLDSELGHRREElLLLQDSLAQAKADLQEALTLGETEVA 1639
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907139925 1640 EKCSHIREVKSLLEELSFQKGELNVHISEKKTQLAL-----IQQEMEKEEKNLQVVLQQLSRHKTELKNV-ADILQLETS 1713
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeLEEELEELEEELEELEEELEELREELAELeAELEQLEED 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1907139925 1714 -ELQGLKLQHDQKVVELEKAQVDVLEEKLELENLQQATQQQRRelERQRQLLER 1766
Cdd:COG4717 469 gELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE--ERLPPVLER 520
|
|
| |
