|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
93-418 |
8.28e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 63.22 E-value: 8.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 93 QKTKGElhicRQRMDLLNK-QQESLAAEiaTEKEANNMAAIGRLQAASRRLQTELENEKDL--QSKITAMLKDSENAMWH 169
Cdd:pfam17380 281 QKAVSE----RQQQEKFEKmEQERLRQE--KEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 170 IEIQKGQFEDVRKHHEAEAEARQRGLE---VHSARQLQREREAMEKSEKNRLLRARKSLHTQKELglRHQKLVEDAQRNH 246
Cdd:pfam17380 355 QEERKRELERIRQEEIAMEISRMRELErlqMERQQKNERVRQELEAARKVKILEEERQRKIQQQK--VEMEQIRAEQEEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 247 R-IAVKFLKASLGRVREREQKEEMESRTHMQR-RMDAVLSLKNNITASRETLKKFQAWGQTRADLAKQKALTEKEVIlsq 324
Cdd:pfam17380 433 RqREVRRLEEERAREMERVRLEEQERQQQVERlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI--- 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 325 ggdafkylfhqrrhqELEAQKRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQHPLSKPINrrtlrdktwQYISDFCEGK 404
Cdd:pfam17380 510 ---------------EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ---------EQMRKATEER 565
|
330
....*....|....
gi 1907156628 405 SVLTSqQERERELL 418
Cdd:pfam17380 566 SRLEA-MEREREMM 578
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-374 |
1.05e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 33 EVERPSEGLEDEGSHSSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNLLDKMHEEKDVFIQKTKGELHicRQRMDLLNKQ 112
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKA 1466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 113 QESLAAEIATEK-EANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMWHIEIQKGqfEDVRKHHEA-EAEA 190
Cdd:PTZ00121 1467 EEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA--EEAKKADEAkKAEE 1544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 191 RQRGLEVHSARQLqREREAMEKSEKNRLLRARKSLHTQKELGLRH--QKLVEDAQRNHRIAVKFLKASLGRVREREQKEE 268
Cdd:PTZ00121 1545 KKKADELKKAEEL-KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 269 MESRTHMQRRMDAVLSLKNNITASR-ETLKKFQAWGQTRADLAKQKALTEKEVI--LSQGGDAFKYLFHQRRHQELEAQK 345
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKaEELKKAEEENKIKAAEEAKKAEEDKKKAeeAKKAEEDEKKAAEALKKEAEEAKK 1703
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1907156628 346 ----RAFEEEQK-----LRKQEIVNRI----LKEEAEEEQRK 374
Cdd:PTZ00121 1704 aeelKKKEAEEKkkaeeLKKAEEENKIkaeeAKKEAEEDKKK 1745
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-501 |
9.67e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 9.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 22 DERVQLEDLEFEVERPSEGLEDEGSHSSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNLLDKMHEEKDVFIQKTKGE--- 98
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEekk 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 99 --------LHICRQRMDLLNKQQES--LAAEIATEKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMW 168
Cdd:PTZ00121 1392 kadeakkkAEEDKKKADELKKAAAAkkKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 169 HIEIQKgQFEDVRKHHEAEAEARQRGLEVHSARQLQRER----EAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQR 244
Cdd:PTZ00121 1472 ADEAKK-KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 245 nHRIAVKFLKASlgRVREREQKEEMESRTHMQRRMDAVLSlKNNITASRETLKKFQAWGQTRADLAKQKALTEKEVILSQ 324
Cdd:PTZ00121 1551 -LKKAEELKKAE--EKKKAEEAKKAEEDKNMALRKAEEAK-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 325 GGDAFKYLFHQRRHQELEAQKRAfeeeQKLRKQEIVNRILKEE--AEEEQRKRRQHPLSKPINRRtlRDKTWQYISDFCE 402
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKA----EELKKAEEENKIKAAEeaKKAEEDKKKAEEAKKAEEDE--KKAAEALKKEAEE 1700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 403 GKSVLTSQQERERELllyPKTVCVIKAISSESVQVDLGSISTEDEvlaepdisglwNKESYQVPKEDMERKPVGGSKMEK 482
Cdd:PTZ00121 1701 AKKAEELKKKEAEEK---KKAEELKKAEEENKIKAEEAKKEAEED-----------KKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490
....*....|....*....
gi 1907156628 483 DILARTMEQLRSGVVQKQV 501
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
105-377 |
2.38e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 105 RMDLLNKQQESLAAEIATEKEANNmaaigRLQAASRRLQTELENEKDLQSKITAMLKDSENAMWHIEIQKGQFEDVRKHH 184
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELE-----ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 185 EAE-AEARQRGLEVHSARQLQREREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHRIAvkflKASLGRVRER 263
Cdd:COG1196 308 EERrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 264 EQKEEMESRTHMQRRMDAVLSLKNNITASRETLKKFQAwgQTRADLAKQKALTEKEVilsqggdafkylfhQRRHQELEA 343
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE--ELEELEEALAELEEEEE--------------EEEEALEEA 447
|
250 260 270
....*....|....*....|....*....|....
gi 1907156628 344 QKRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQ 377
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
42-473 |
3.43e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 3.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 42 EDEGSHSSAKK---ESKGAEKMRKSTTKDQVQAFHLRKSLNLLDKMHEEKDVFIQKTKGELHIC--RQRMDLLNKQQESL 116
Cdd:PTZ00121 1467 EEAKKADEAKKkaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeAKKADEAKKAEEKK 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 117 AAEIATEKEANNMAAIGRLQAASRRLqtelENEKDLQSKITAMLKDSENAMWHIEIQKGQFEDVRKHHEA--EAEARQRG 194
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKA----EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkAEEAKIKA 1622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 195 LEVHSARQLQREREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHRIAVKFLKAslgRVREREQKEEMESRTH 274
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA---EEDEKKAAEALKKEAE 1699
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 275 MQRRMDAVLSLKNNITASRETLKKFQAWGQTRADLAKQKALTEKEvilsQGGDAFKYLFHQRRHQELEAQKRAFEEEQKL 354
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK----KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 355 RKQEIVnrilKEEAEEEQRKRRQHPlskpinRRTLRD-------------KTWQYISDF-----CEGKSVLTSQQERERE 416
Cdd:PTZ00121 1776 EKEAVI----EEELDEEDEKRRMEV------DKKIKDifdnfaniieggkEGNLVINDSkemedSAIKEVADSKNMQLEE 1845
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907156628 417 LLLYPKTVCVIKAISSESVQVDLGSISTEDevLAEPDISG-LWNKESYQVPKEDMERK 473
Cdd:PTZ00121 1846 ADAFEKHKFNKNNENGEDGNKEADFNKEKD--LKEDDEEEiEEADEIEKIDKDDIERE 1901
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
56-389 |
3.43e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.97 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 56 GAEKMRKSTTKDQVQAFHLRKSLNLLDkmhEEKDVFIQKTKGELHICRQRMDLLNKQQESLAAEIATEKEANN-MAAIGR 134
Cdd:TIGR00618 174 PLDQYTQLALMEFAKKKSLHGKAELLT---LRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAyLTQKRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 135 LQAASRRLQTELENEKDLQSKITAMLKDSENAMWHIEIQKgQFEDVRKHHEAEAEARQRGLEVHSARQLQREREAMEKSE 214
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRAR-KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 215 KNRLLRARKSLHTQKELglrHQKLVEDAQRNHRIAVKflkaSLGRVREREQKEEMESRTHMQRRMDAVLSLKNNITASR- 293
Cdd:TIGR00618 330 RAAHVKQQSSIEEQRRL---LQTLHSQEIHIRDAHEV----ATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKEl 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 294 ETLKKFQAWG----QTRADLAKQKALTEKEVILSQGGDAFKYLFHQRRHQEL--------EAQKRAFEEEQKLR-KQEIV 360
Cdd:TIGR00618 403 DILQREQATIdtrtSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEklekihlqESAQSLKEREQQLQtKEQIH 482
|
330 340
....*....|....*....|....*....
gi 1907156628 361 NRILKEEAEEEQRKRRQHPLSKPINRRTL 389
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCI 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-315 |
1.99e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 92 IQKTKGELHICRQRMDLLNKQQESLAAEIA--TEKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMwh 169
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL-- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 170 IEIQKGQFEDVRKHHEAEAEA-RQRGLEVHSARQLQREREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHRI 248
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907156628 249 AVKflKASLGRVREREQKEEMESRTHMQRRMDAVLSLKNNITASRETLKKFQAWGQTRADLAKQKAL 315
Cdd:COG1196 455 EEE--EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2-234 |
3.91e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 2 EEPTVQFSDEDLVDNFPPMDDERVQLEDLEFEVERPSEGLEDEGSHSSAKKESKGAEKMRksttkDQVQAFHLRKSLNLL 81
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLR-----AALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 82 DKMHEEKDVFIQKTKGELHICRQRMDLLN------KQQ---------ESLAAEIAT-EKEANNMA-AIGRLQAASRRLQT 144
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALReeldelEAQirgnggdrlEQLEREIERlERELEERErRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 145 ELENEKD----LQSKITAMLKDSEnamwhiEIQKGQFEDVRKHHEAEAEARQRglevhsARQLQREREAMEKSEKN---R 217
Cdd:COG4913 374 PLPASAEefaaLRAEAAALLEALE------EELEALEEALAEAEAALRDLRRE------LRELEAEIASLERRKSNipaR 441
|
250
....*....|....*..
gi 1907156628 218 LLRARKSLhtQKELGLR 234
Cdd:COG4913 442 LLALRDAL--AEALGLD 456
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
187-377 |
2.52e-05 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 48.41 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 187 EAEARQRGLEVHSARQLQRE--REAMEKSEKNRLLRARKSLHTQK---ELGLRHQKLVEDAQRNHRIAVK-FLKASLGRV 260
Cdd:pfam15709 340 AERAEMRRLEVERKRREQEEqrRLQQEQLERAEKMREELELEQQRrfeEIRLRKQRLEEERQRQEEEERKqRLQLQAAQE 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 261 REREQKEEMESR-THMQRRmdavlslknnitASRETLKKFQAWGQTRADLAKQKALTEKEVILSQGGDAFKYlfhQRRHQ 339
Cdd:pfam15709 420 RARQQQEEFRRKlQELQRK------------KQQEEAERAEAEKQRQKELEMQLAEEQKRLMEMAEEERLEY---QRQKQ 484
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907156628 340 ELEAQKRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQ 377
Cdd:pfam15709 485 EAEEKARLEAEERRQKEEEAARLALEEAMKQAQEQARQ 522
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
48-356 |
4.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 48 SSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNL-LDKMHEEKDVFIQKTKGELHI----CRQRMDLLNKQQESLAaeiat 122
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKkIKDLGEEEQLRVKEKIGELEAeiasLERSIAEKERELEDAE----- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 123 EKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMwhieiqkgqfEDVRKHHEAEAEARQRGLEVHSARq 202
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL----------EDLRAELEEVDKEFAETRDELKDY- 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 203 lqREREAMEKSEKNRLLRARKslhtqkelglrhqKLVEDAQRNHrIAVKFLKASLGRVREreQKEEMESRThmqrrmdav 282
Cdd:TIGR02169 391 --REKLEKLKREINELKRELD-------------RLQEELQRLS-EELADLNAAIAGIEA--KINELEEEK--------- 443
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907156628 283 LSLKNNITASRETLKkfqawgQTRADLAK-QKALTEKEVILSQGGDAFKYLfhQRRHQELEAQKRAFEEEQKLRK 356
Cdd:TIGR02169 444 EDKALEIKKQEWKLE------QLAADLSKyEQELYDLKEEYDRVEKELSKL--QRELAEAEAQARASEERVRGGR 510
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
92-386 |
9.68e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 9.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 92 IQKTKGELHICRQRMDLLNKQQESLAAEIATEKEANNMA--AIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMWH 169
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 170 IEIQKGQFEDVRKHHEAEAEARQRGLEVHSARQLQREREAMEKSEKNRLLRARksLHTQKELGLRHQKLVEDAQRnhriA 249
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE--AANLRERLESLERRIAATER----R 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 250 VKFLKASLGRVRER------EQKEEMESRTHMQRRMDAVLSLKNNITASRETLKKfqAWGQTRADL--------AKQKAL 315
Cdd:TIGR02168 840 LEDLEEQIEELSEDieslaaEIEELEELIEELESELEALLNERASLEEALALLRS--ELEELSEELreleskrsELRREL 917
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907156628 316 TEKEVILSQggdafkylfHQRRHQELEAQ----KRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQHPLSKPINR 386
Cdd:TIGR02168 918 EELREKLAQ---------LELRLEGLEVRidnlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
45-376 |
9.77e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 9.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 45 GSHSSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNLLDKMHEEKD--------------VFIQKTKGELHICRQRMDLLN 110
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKaleyyqlkekleleEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 111 KQQESLAAEIA-TEKEANNMAAIGRLQAASRRLQT-ELENEKDLQSKITAMLKDSENAMWHIEIQKGQFEDVRKHHEAEA 188
Cdd:pfam02463 244 ELLRDEQEEIEsSKQEIEKEEEKLAQVLKENKEEEkEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 189 EARQRGLEvhsARQLQREREAMEKSEKNRllraRKSLHTQKELGLRhQKLVEDAQRNHRIAVKFLKASLGRVREREQKEE 268
Cdd:pfam02463 324 KKAEKELK---KEKEEIEELEKELKELEI----KREAEEEEEEELE-KLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 269 MESRTH-MQRRMDAVLSLKNNItasrETLKKFQAWGQTRADLAKQKALTEKEVILSQGGDAFKYLFHQRRHQELEAQKra 347
Cdd:pfam02463 396 ELELKSeEEKEAQLLLELARQL----EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK-- 469
|
330 340
....*....|....*....|....*....
gi 1907156628 348 fEEEQKLRKQEIVNRILKEEAEEEQRKRR 376
Cdd:pfam02463 470 -SEDLLKETQLVKLQEQLELLLSRQKLEE 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
115-390 |
1.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 115 SLAAEIATEKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMWHIEIQKGQFEDVRkhheAEAEARQRG 194
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL----AALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 195 LEvHSARQLQREREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHRIavkflkasLGRVrEREQKEEMESrth 274
Cdd:COG4942 88 LE-KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYL-APARREQAEE--- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 275 MQRRMDAVLSLKNNITASRETLKKFQA-WGQTRADLAKQKAltEKEVILSQggdafkylfHQRRHQELEAQKRAFEEEQk 353
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAeLEEERAALEALKA--ERQKLLAR---------LEKELAELAAELAELQQEA- 222
|
250 260 270
....*....|....*....|....*....|....*..
gi 1907156628 354 lrkQEIVNRILKEEAEEEQRKRRQHPLSKPINRRTLR 390
Cdd:COG4942 223 ---EELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
21-312 |
1.53e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 21 DDERVQLEDLEFEVERpsegLEDEgsHSSAKKESKGAEKMRKstTKDQVQAfhLRKSLNLLDKMHEEKDVFIQKTkgelh 100
Cdd:PRK02224 471 EEDRERVEELEAELED----LEEE--VEEVEERLERAEDLVE--AEDRIER--LEERREDLEELIAERRETIEEK----- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 101 icRQRMDLLNKQQESLAAEiATEKEANNMAAIGRLQAASRRL------QTELENEKDLQSKITAMLKDSENAMWHIE--- 171
Cdd:PRK02224 536 --RERAEELRERAAELEAE-AEEKREAAAEAEEEAEEAREEVaelnskLAELKERIESLERIRTLLAAIADAEDEIErlr 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 172 ---IQKGQFEDVRKHHEAEAEARQRGLEvhsarqlqrereamEKSEKNRLLRARKslhtQKELGLRHQKLVEDAQRNHRI 248
Cdd:PRK02224 613 ekrEALAELNDERRERLAEKRERKRELE--------------AEFDEARIEEARE----DKERAEEYLEQVEEKLDELRE 674
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907156628 249 AVKFLKASLGRVR-EREQKEEM-ESRTHMQRRMDAVLSLKNNITASRETlkkfqaWGQTRADLAKQ 312
Cdd:PRK02224 675 ERDDLQAEIGAVEnELEELEELrERREALENRVEALEALYDEAEELESM------YGDLRAELRQR 734
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
86-366 |
5.36e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 86 EEKDVFIQKT---KGELHICRQRMDLLNKQQESLAAEIATEKEANNMAAIgRLQAAS---RRLQTELEnekdLQSKITAM 159
Cdd:COG3096 278 NERRELSERAlelRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQ-DYQAASdhlNLVQTALR----QQEKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 160 LKDSENAMWHIEIQKGQFEDVRKHHEaEAEAR------------------QRGLEVHSARQLQReREAMEKSEKNRLLRA 221
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEEAAEQLA-EAEARleaaeeevdslksqladyQQALDVQQTRAIQY-QQAVQALEKARALCG 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 222 RKSLhTQKELGLRHQKLVEDAQRNHRiavkflkaslgRVREREQKEEMESRTHmqRRMDAVLSLKNNITA--SREtlkkf 299
Cdd:COG3096 431 LPDL-TPENAEDYLAAFRAKEQQATE-----------EVLELEQKLSVADAAR--RQFEKAYELVCKIAGevERS----- 491
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 300 QAWGQTRADLAK---QKALTEKEVILsqggdafkylfhQRRHQELEaqkrafeeeQKLRKQEIVNRILKE 366
Cdd:COG3096 492 QAWQTARELLRRyrsQQALAQRLQQL------------RAQLAELE---------QRLRQQQNAERLLEE 540
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
112-374 |
5.51e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 112 QQESLAAEIATEKEANNMAAIGRLQAASRRLQTELENEKDLQSKITAMLKDSENAmwhieiqkgqfEDVRKHHEAE-AEA 190
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA-----------EEARKAEDAKkAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 191 RQRGLEVHSARQLQREREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHRIAVKFLKASLGRVREREQKEEME 270
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 271 SRTHMQRRMDAVlslKNNITASRETLKKfqAWGQTRADLAKqKALTEKEVilsqggDAFKYLFHQRRHQElEAQKRAfeE 350
Cdd:PTZ00121 1261 RMAHFARRQAAI---KAEEARKADELKK--AEEKKKADEAK-KAEEKKKA------DEAKKKAEEAKKAD-EAKKKA--E 1325
|
250 260
....*....|....*....|....
gi 1907156628 351 EQKLRKQEivnriLKEEAEEEQRK 374
Cdd:PTZ00121 1326 EAKKKADA-----AKKKAEEAKKA 1344
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
119-382 |
6.75e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 119 EIATEKEANNMAA----IGRLQAASRRLQTELENEKDLQSKITAMLKDSENAMWHIEIQK---------GQFEDVRKHHE 185
Cdd:PTZ00121 1040 DVLKEKDIIDEDIdgnhEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKaeeakktetGKAEEARKAEE 1119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 186 A--EAEARQRGLEVHSARQLQREREAMEKSEKNRLLRARKSLHTQKelgLRHQKLVEDAQRNH--RIAVKFLKASLGRVR 261
Cdd:PTZ00121 1120 AkkKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK---AEEARKAEDAKKAEaaRKAEEVRKAEELRKA 1196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 262 EREQKEEMESRTHMQRRMDAVLSLKNNITAsrETLKKFQAwGQTRADLAKQKALTEKEVILSQGGDAFKYLFHQRRHQEL 341
Cdd:PTZ00121 1197 EDARKAEAARKAEEERKAEEARKAEDAKKA--EAVKKAEE-AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1907156628 342 EAQKRAFEEeqkLRKQEIVNRilKEEAEEEQRKRRQHPLSK 382
Cdd:PTZ00121 1274 AEEARKADE---LKKAEEKKK--ADEAKKAEEKKKADEAKK 1309
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
217-386 |
8.02e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.54 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 217 RLLRARKSLHTQKELGLrhQKLVEDAQRNHRIAVKFLKASLGRVREREQKEEMESRTHMQRRMDAVLSLKNNITASRETL 296
Cdd:PRK12705 23 VLLKKRQRLAKEAERIL--QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 297 K--KFQAWGQTRADLAKQKALTEKEvilSQGGDAFKYLFHQRRHQELEAQKRAFEEEQKLRKQEIVNRIlKEEAEEEQRK 374
Cdd:PRK12705 101 DnlENQLEEREKALSARELELEELE---KQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKI-EEEADLEAER 176
|
170
....*....|..
gi 1907156628 375 RRQHPLSKPINR 386
Cdd:PRK12705 177 KAQNILAQAMQR 188
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
33-289 |
9.38e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 33 EVERPSEGLEDEGSHSSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNLldKMHEEKDVFIQKTKGELHICRQRMDLLNKQ 112
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA--KKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 113 QESL--AAEIATEKEANNM--AAIGRLQAASRRLQTELEN-EKDLQSKITAMLKDSENAMWHIEIQKGQFEDVRKHHEAE 187
Cdd:PTZ00121 1643 AEEKkkAEELKKAEEENKIkaAEEAKKAEEDKKKAEEAKKaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 188 AEARQRGLEVHSARqlQREREAMEKSEKNRLLRARKslhtqkelglrhQKLVEDAQRNHRIAVKFLKASLGRVREREQKE 267
Cdd:PTZ00121 1723 KAEEENKIKAEEAK--KEAEEDKKKAEEAKKDEEEK------------KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
250 260
....*....|....*....|..
gi 1907156628 268 EMESRTHMQRRMDAVLSLKNNI 289
Cdd:PTZ00121 1789 DEKRRMEVDKKIKDIFDNFANI 1810
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
21-377 |
1.00e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 21 DDERV--QLEDLEFEVERPSEGLEDEgsHSSAKKESKGAEKMRKSTTKDQVQAFHLRKSLNLLDKMHEEKDVFIQKTKGE 98
Cdd:PRK02224 308 DAEAVeaRREELEDRDEELRDRLEEC--RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 99 LhicrqrmdllnkqqESLAAEIATEKEANNMAAIgRLQAASRRLQTELENEKDLQSKIT---AMLKDSENAmwhieIQKG 175
Cdd:PRK02224 386 I--------------EELEEEIEELRERFGDAPV-DLGNAEDFLEELREERDELREREAeleATLRTARER-----VEEA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 176 QF-----------EDVRK--HHEAEAEARQRGLEVHSAR-QLQREREAMEKseknRLLRARKSLHTQKELglrhQKLVED 241
Cdd:PRK02224 446 EAlleagkcpecgQPVEGspHVETIEEDRERVEELEAELeDLEEEVEEVEE----RLERAEDLVEAEDRI----ERLEER 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 242 AQR-NHRIAVKflKASLGRVRE-----REQKEEMESRTHMQRrmDAVLSLKNNITASRETLKKFQawgQTRADLAKQ-KA 314
Cdd:PRK02224 518 REDlEELIAER--RETIEEKREraeelRERAAELEAEAEEKR--EAAAEAEEEAEEAREEVAELN---SKLAELKERiES 590
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907156628 315 LTEKEVILS---QGGDAFKYLFHQRRH-QELEAQKRAFEEEQKLRKQEIVNRiLKEEAEEEQRKRRQ 377
Cdd:PRK02224 591 LERIRTLLAaiaDAEDEIERLREKREAlAELNDERRERLAEKRERKRELEAE-FDEARIEEAREDKE 656
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
206-376 |
1.26e-03 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 41.61 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 206 EREAMEKSEKNRLLRARKSLHTQKELGLRHQKLVEdAQRNHRIAVKFLKASLGRVREREQKEEMESRTHMQRRmdavlsl 285
Cdd:pfam13904 14 QPEEESSKHRVPSLSLDSSSQSSSLTYARKLEGLK-LERQPLEAYENWLAAKQRQRQKELQAQKEEREKEEQE------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 286 knniTASRETL--KKFQAWGQTRADLAKQKALTEKEVILSQGgdAFKYLFHQRRHQELEAQKRAFEE-------EQKLRK 356
Cdd:pfam13904 86 ----AELRKRLakEKYQEWLQRKARQQTKKREESHKQKAAES--ASKSLAKPERKVSQEEAKEVLQEwerkkleQQQRKR 159
|
170 180
....*....|....*....|
gi 1907156628 357 QEIVNRILKEEAEEEQRKRR 376
Cdd:pfam13904 160 EEEQREQLKKEEEEQERKQL 179
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
158-374 |
3.49e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 158 AMLKDSENAMWHIEIQKGQFEDVRKHHEAEAEARQRGlevhSARQLQREreamekSEKNRLLRARKSLhTQKELGLRHQK 237
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKKASA----LKRQLDRE------SDRNQELQKRIRL-LEKREAEAEEA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 238 LVEDAQRNhRIAVKFLKASLGRVREREQKEE-------------MESRTHMQRRMDAVLSLKNNITASRETL----KKFQ 300
Cdd:pfam05557 71 LREQAELN-RLKKKYLEALNKKLNEKESQLAdarevisclknelSELRRQIQRAELELQSTNSELEELQERLdllkAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 301 AWGQTRADL-AKQKALTEKEV--------ILSQGGDAF---KYLFHQRRHQELEAQKRAFEEEQK-LRKQEIVNRILKEE 367
Cdd:pfam05557 150 EAEQLRQNLeKQQSSLAEAEQrikelefeIQSQEQDSEivkNSKSELARIPELEKELERLREHNKhLNENIENKLLLKEE 229
|
....*..
gi 1907156628 368 AEEEQRK 374
Cdd:pfam05557 230 VEDLKRK 236
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
140-387 |
5.18e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 41.01 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 140 RRLQTELENEKDLQSKITAMLKDSENAMWHIEiqKGQFEDVRKHH--------EAEAEARQRGLEVHSARQLQREREA-- 209
Cdd:pfam02029 77 KRLQEALERQKEFDPTIADEKESVAERKENNE--EEENSSWEKEEkrdsrlgrYKEEETEIREKEYQENKWSTEVRQAee 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 210 -MEKSEKNRLLRARKSLHTQKELGLRHQKLVEDAQRNHrIAVKFLKASLGRVREREQKEEMESRTHMQRRMDAVLSLKNN 288
Cdd:pfam02029 155 eGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKY-ESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQS 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 289 ITASRETLKKFQAwGQTRADLAKQKALTEKEvilsqggdAFKYLFH--QRRHQELEAQK-------RAFEEEQKLRKQEI 359
Cdd:pfam02029 234 QEREEEAEVFLEA-EQKLEELRRRRQEKESE--------EFEKLRQkqQEAELELEELKkkreerrKLLEEEEQRRKQEE 304
|
250 260
....*....|....*....|....*...
gi 1907156628 360 VNRILKEeaEEEQRKRRQHplskpINRR 387
Cdd:pfam02029 305 AERKLRE--EEEKRRMKEE-----IERR 325
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
109-378 |
6.00e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 40.29 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 109 LNKQQESLAAEIATEKEANNMAAIGRLQAASRRLQTELENE-------KDLQSKITAMLKDSENAMWHIEIQKGQF-EDV 180
Cdd:pfam13868 28 IAEKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKeerkryrQELEEQIEEREQKRQEEYEEKLQEREQMdEIV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 181 RKHHEAEAEARQRGLEvhSARQLQREREAMeksekNRLLRARKSLHTQKELG-----LRHQKLVEDAQRNHRIAVKFLKa 255
Cdd:pfam13868 108 ERIQEEDQAEAEEKLE--KQRQLREEIDEF-----NEEQAEWKELEKEEEREederiLEYLKEKAEREEEREAEREEIE- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 256 slgRVREREQK---EEMESRTHMQRRMDAVLSLKNNITASRETLKKFQAWGQTRADLAKQKALTEKEVILsqggdafkyl 332
Cdd:pfam13868 180 ---EEKEREIArlrAQQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREEQIE---------- 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1907156628 333 fHQRRHQELEAQKRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQH 378
Cdd:pfam13868 247 -LKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAEKRRMKRLEH 291
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
152-377 |
9.85e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 152 LQSKITAMLKDsenamwhiEIQKGQFEDVRKHheaeaeARQRGLEVHSARQLQREREAMEKSEK--NRLLRARKSLHTQK 229
Cdd:COG4717 39 LLAFIRAMLLE--------RLEKEADELFKPQ------GRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEEL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907156628 230 ELGLRHQKLVEDAQRNHRIAVKFLKASLGRVREREQKEEMESR-THMQRRMDAVLSLKNNITASRETLKKFQAwgqtRAD 308
Cdd:COG4717 105 EELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERlEELEERLEELRELEEELEELEAELAELQE----ELE 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907156628 309 LAKQKALTEKEVILSQGGDAFKYLfhQRRHQELEAQKRAFEEEQKLRKQEIVNRILKEEAEEEQRKRRQ 377
Cdd:COG4717 181 ELLEQLSLATEEELQDLAEELEEL--QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKE 247
|
|
| |
