|
Name |
Accession |
Description |
Interval |
E-value |
| rne |
PRK10811 |
ribonuclease E; Reviewed |
1345-1641 |
8.17e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 58.13 E-value: 8.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1345 EVPALPPEESVSlpETVSQNEISEP-----------------SALLANYSVSASEPSVLTSEAAVTAPEPPLEPESSVMS 1407
Cdd:PRK10811 693 EAKALNVEEQSV--QETEQEERVQQvqprrkqrqlnqkvrieQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLP 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1408 TPAESAVATEEHEIVPERpvtyiSENSM----LAEPSML----------------TSEPTIMSETAetfdsmrASGHTAS 1467
Cdd:PRK10811 771 VVAQTAPEQDEENNAENR-----DNNGMprrsRRSPRHLrvsgqrrrryrderypTQSPMPLTVAC-------ASPEMAS 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1468 -EVSIS--LMEPAVTIPEPSQQSTLELPAMAVSELPVMAVPEPLAVA---------VPAPAVMAVPELPAVVVAEHPAVA 1535
Cdd:PRK10811 839 gKVWIRypVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSApvveavaevVEEPVVVAEPQPEEVVVVETTHPE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1536 VPEYPAVAVPeypavAVLDPPAESLLEPMAlAEPEHVTIPVPHVSALEPTVPGLEPTVSvlQPNVIVSEPSVSVQESTVT 1615
Cdd:PRK10811 919 VIAAPVTEQP-----QVITESDVAVAQEVA-EHAEPVVEPQDETADIEEAAETAEVVVA--EPEVVAQPAAPVVAEVAAE 990
|
330 340 350
....*....|....*....|....*....|
gi 1926162203 1616 VLESAVTISQQTQVISTETVLE----STPM 1641
Cdd:PRK10811 991 VETVTAVEPEVAPAQVPEATVEhnhaTAPM 1020
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
742-1038 |
8.78e-07 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 54.63 E-value: 8.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 742 MLASNTMDSQmlasSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSqmlaTSSMDSQMLATSSMDSQ 821
Cdd:NF033849 230 MYAANLGQSA----GTGYGESVGHSTSQGQSHSVGTSESHSVGTSQSQSHTTGHGSTRG----WSHTQSTSESESTGQSS 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 822 MLATSSMDSQ--MLATSTMDSQMLATSSMDSQMLATSSMDSQmlatSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMD 899
Cdd:NF033849 302 SVGTSESQSHgtTEGTSTTDSSSHSQSSSYNVSSGTGVSSSH----SDGTSQSTSISHSESSSESTGTSVGHSTSSSVSS 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 900 SQMLATSS---MDSQM---LATSSMDSQMLATSSMDSQ-------MLATSSMDSQMLATSSMDSQmlATSSMDSQMLATS 966
Cdd:NF033849 378 SESSSRSSssgVSGGFsggIAGGGVTSEGLGASQGGSEgwgsgdsVQSVSQSYGSSSSTGTSSGH--SDSSSHSTSSGQA 455
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1926162203 967 SMDSQMLATSSM--DSQMLATSTM----DSQMLATSTMDSQMLATSSMDSQMLASGAMDSQMLASGSMDAQML-ASGTM 1038
Cdd:NF033849 456 DSVSQGTSWSEGtgTSQGQSVGTSeswsTSQSETDSVGDSTGTSESVSQGDGRSTGRSESQGTSLGTSGGRTSgAGGSM 534
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
249-640 |
3.25e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.55 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 249 VPTTAVVLKSSEPVVTMSveyqtksvlKSLESIPPEPSKImllEPPVAKVLEPSETLVSSEIPTEVH----PEPSTSTTM 324
Cdd:PHA03247 2568 VPPPRPAPRPSEPAVTSR---------ARRPDAPPQSARP---RAPVDDRGDPRGPAPPSPLPPDTHapdpPPPSPSPAA 2635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 325 DFPESAATEVLRLPEQPVEVPL---------EIADSSMTRPQELLELPKTTPLELPESSVASVMELPGPPATSmlELQGP 395
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPApgrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP--EPAPH 2713
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 396 PVTPVLELPGPSATPVPELPGPLSTPVPEllgppatAVPELPGPSVTSVPQLSQELPGLPAPSMGLEPPQEVPEPPVMAQ 475
Cdd:PHA03247 2714 ALVSATPLPPGPAAARQASPALPAAPAPP-------AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 476 ELPGLPVVTAAVELPGQPAVTVAMELTEQPVTTTELEQSVGMTTVEHPGQPEVTTATGLLGQPEAAMVLELPGQPVATTA 555
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 556 lelPGQPSVTgVPELPGLPSATR----ALELSGQPVATGALELPGQLMAAGALEFAGQSgaagalELLGQPLATGVLELP 631
Cdd:PHA03247 2867 ---PSRSPAA-KPAAPARPPVRRlarpAVSRSTESFALPPDQPERPPQPQAPPPPQPQP------QPPPPPQPQPPPPPP 2936
|
....*....
gi 1926162203 632 GQPGAPELP 640
Cdd:PHA03247 2937 PRPQPPLAP 2945
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
176-446 |
9.51e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.84 E-value: 9.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 176 LSETSESAVVLEPPILSMEiSEPHTLETLKPATKTAELSVASASVISVQSEQSVAVMLEPSTTKVLDsfaTAPVPTTAVV 255
Cdd:NF033839 113 LNKIVESTSKSQLQKLMME-SQSKVDEAVSKFEKDSSSSSSSGSSTKPETPQPENPEHQKPTTPAPD---TKPSPQPEGK 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 256 lKSSEPVVTMSVEYQTKSVLKSLESIPPEPSKIMLLEP------PVAKVLEPSETLVSSEIP---TEVHPEPSTSTTMDF 326
Cdd:NF033839 189 -KPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEkhrqivALIKELDELKKQALSEIDnvnTKVEIENTVHKIFAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 327 PESAATEVLR-----LPEQPVEVPLEIADSSMTRPQELLELPKTTPLELPESSVASVMELPGPPATSMLELQGPPVTPVL 401
Cdd:NF033839 268 MDAVVTKFKKgltqdTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQL 347
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1926162203 402 ELPGPSATPVPELPGPLSTPVPELLGPPATAVPELPGPSVTSVPQ 446
Cdd:NF033839 348 ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPE 392
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
367-450 |
3.95e-04 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 42.37 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 367 PLELPESSVASVMELPGPPATSMLelqgPPVTPVLELPGPSATPVPELPGPlsTPVPELLGPPATAVPELPGPSVTSVPQ 446
Cdd:pfam12526 31 PPESAHPDPPPPVGDPRPPVVDTP----PPVSAVWVLPPPSEPAAPEPDLV--PPVTGPAGPPSPLAPPAPAQKPPLPPP 104
|
....
gi 1926162203 447 LSQE 450
Cdd:pfam12526 105 RPQR 108
|
|
| Lepto_longest |
TIGR04388 |
putative large structural protein; Members of this family are restricted so far to the lineage ... |
646-1042 |
6.92e-04 |
|
putative large structural protein; Members of this family are restricted so far to the lineage Leptospira, where they may be the longest protein encoded by the genome. Two or three paralogs are often found. The seed alignment for this model includes sequences with significant length variability, and stops adjacent to an intein feature most full-length members of this family share. Oddly, members closely related in sequence up to the start of the intein (see TIGR01445) usually show very little sequence similarity C-terminal to the end of the intein (see TIGR01443). [Unknown function, General]
Pssm-ID: 275181 [Multi-domain] Cd Length: 1134 Bit Score: 45.27 E-value: 6.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 646 TVALEISVQSVVTTELSTMTVSQSLEVPSTTALESYNTV----------------------AQELPTTLVGETSVTVGVD 703
Cdd:TIGR04388 435 TFWYSINFQVQDLNAYANATTWNGFVSQLNSELHSWNNVtpsitnwegqvaayqaqyaawhAQAQTYIDSLQQSYTTGVQ 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 704 PLMAQESHMLasntmethmlasNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLATSSMDSQMLATSSmDSQML 783
Cdd:TIGR04388 515 DLQSQEQSWL------------ANMGNQFQAQSSFAQASNDLDNLKTQQILDSLSPKISQVNLPSSSDVLSRNA-DAPVP 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 784 ATSSMDSqmlATSSMDSQMLATS--SMDSQmLATSSMDSQMLATSSMDSQMLATSTMDSQ---MLATSSMDSQMLATSSM 858
Cdd:TIGR04388 582 DQSSLNN---VLSIFQQSLMGASnlALENQ-LNNQAIDEKLNAIQGIASSLGSNAVVDSHgniVYTTVIEDGHAKLKAGG 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 859 DsqmlATSSMDSQmlatSSMDSQMLATSSMDSQMLATSSMdSQMLATSSMDSQMLAT-----SSMDSQMLATSSMDSQML 933
Cdd:TIGR04388 658 D----ATNASDYE----ANTTDRVVTIAAPATIAIGAAAA-GDLFQSWDTGSVVSQNftnlgSFNSSYNSTINSLNHQVA 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 934 ATSSMDSQMLATSSMDSQMLATSSMDSQMLAT---------SSMDSQML-ATSSMDSQMLATST-----MDSQMLatSTM 998
Cdd:TIGR04388 729 ALNSLNAKNDSSFQEDAQAKASIASLIQSLAQavllggsfgSWVKGQIQdKVNSAIATALANTTgmspdMAAQLV--SWF 806
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1926162203 999 DSQMLATSSMDSQMLASGAMDSQMLASGSMD----AQMLASGTMDAQM 1042
Cdd:TIGR04388 807 EKQQAAKKAKAKARTEDITSGVVVVASIALSflagPEMLAVGQAALQA 854
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
363-505 |
1.42e-03 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 43.91 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 363 PKTTPLELPESSVASVMELPG--PPATSMLELQG--PPVTPVLELPGPSATPVPELPGPLstPVPELLGPPATAVPELPG 438
Cdd:TIGR01645 326 PRAQSPATPSSSLPTDIGNKAvvSSAKKEAEEVPplPQAAPAVVKPGPMEIPTPVPPPGL--AIPSLVAPPGLVAPTEIN 403
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1926162203 439 PSVTSVPQLSQELPGLPA------PSMGLEPPQEVPEPPVMAQELPGLPVVTAAVELPGQPAVTVAMELTEQP 505
Cdd:TIGR01645 404 PSFLASPRKKMKREKLPVtfgaldDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQP 476
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rne |
PRK10811 |
ribonuclease E; Reviewed |
1345-1641 |
8.17e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 58.13 E-value: 8.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1345 EVPALPPEESVSlpETVSQNEISEP-----------------SALLANYSVSASEPSVLTSEAAVTAPEPPLEPESSVMS 1407
Cdd:PRK10811 693 EAKALNVEEQSV--QETEQEERVQQvqprrkqrqlnqkvrieQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLP 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1408 TPAESAVATEEHEIVPERpvtyiSENSM----LAEPSML----------------TSEPTIMSETAetfdsmrASGHTAS 1467
Cdd:PRK10811 771 VVAQTAPEQDEENNAENR-----DNNGMprrsRRSPRHLrvsgqrrrryrderypTQSPMPLTVAC-------ASPEMAS 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1468 -EVSIS--LMEPAVTIPEPSQQSTLELPAMAVSELPVMAVPEPLAVA---------VPAPAVMAVPELPAVVVAEHPAVA 1535
Cdd:PRK10811 839 gKVWIRypVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSApvveavaevVEEPVVVAEPQPEEVVVVETTHPE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1536 VPEYPAVAVPeypavAVLDPPAESLLEPMAlAEPEHVTIPVPHVSALEPTVPGLEPTVSvlQPNVIVSEPSVSVQESTVT 1615
Cdd:PRK10811 919 VIAAPVTEQP-----QVITESDVAVAQEVA-EHAEPVVEPQDETADIEEAAETAEVVVA--EPEVVAQPAAPVVAEVAAE 990
|
330 340 350
....*....|....*....|....*....|
gi 1926162203 1616 VLESAVTISQQTQVISTETVLE----STPM 1641
Cdd:PRK10811 991 VETVTAVEPEVAPAQVPEATVEhnhaTAPM 1020
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
742-1038 |
8.78e-07 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 54.63 E-value: 8.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 742 MLASNTMDSQmlasSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSqmlaTSSMDSQMLATSSMDSQ 821
Cdd:NF033849 230 MYAANLGQSA----GTGYGESVGHSTSQGQSHSVGTSESHSVGTSQSQSHTTGHGSTRG----WSHTQSTSESESTGQSS 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 822 MLATSSMDSQ--MLATSTMDSQMLATSSMDSQMLATSSMDSQmlatSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMD 899
Cdd:NF033849 302 SVGTSESQSHgtTEGTSTTDSSSHSQSSSYNVSSGTGVSSSH----SDGTSQSTSISHSESSSESTGTSVGHSTSSSVSS 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 900 SQMLATSS---MDSQM---LATSSMDSQMLATSSMDSQ-------MLATSSMDSQMLATSSMDSQmlATSSMDSQMLATS 966
Cdd:NF033849 378 SESSSRSSssgVSGGFsggIAGGGVTSEGLGASQGGSEgwgsgdsVQSVSQSYGSSSSTGTSSGH--SDSSSHSTSSGQA 455
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1926162203 967 SMDSQMLATSSM--DSQMLATSTM----DSQMLATSTMDSQMLATSSMDSQMLASGAMDSQMLASGSMDAQML-ASGTM 1038
Cdd:NF033849 456 DSVSQGTSWSEGtgTSQGQSVGTSeswsTSQSETDSVGDSTGTSESVSQGDGRSTGRSESQGTSLGTSGGRTSgAGGSM 534
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1464-1598 |
9.63e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 54.10 E-value: 9.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1464 HTASEVSISLMEPAVTIPEPSQQSTLELPAMAVSELPVMAVPEPLAVAVPAPAVMAVPELPAVVVAEHPAVAVPEYPAVA 1543
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1926162203 1544 VPEyPAVAVLDPPAESLLEPMALAEPEHVTIPVPHVSA----LEPTVPGLEPTVSVLQP 1598
Cdd:PRK07994 440 KSE-PAAASRARPVNSALERLASVRPAPSALEKAPAKKeayrWKATNPVEVKKEPVATP 497
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
1500-1647 |
7.47e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.58 E-value: 7.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1500 PVMAVPEPLAVAVPAPAVMAVPELPAVVVAEHPAVAVPEYPAVAVPEYPAVAVldPPAESLLEPMALAEPEHVTIPV--- 1576
Cdd:PRK10811 850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVA--EPQPEEVVVVETTHPEVIAAPVteq 927
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1926162203 1577 PHVSAlEPTVPGLEPTVSVLQPNVIVSEPSVSVQEST----VTVLESAVTISQQTQVISTETVLESTPMILESSV 1647
Cdd:PRK10811 928 PQVIT-ESDVAVAQEVAEHAEPVVEPQDETADIEEAAetaeVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
249-640 |
3.25e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.55 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 249 VPTTAVVLKSSEPVVTMSveyqtksvlKSLESIPPEPSKImllEPPVAKVLEPSETLVSSEIPTEVH----PEPSTSTTM 324
Cdd:PHA03247 2568 VPPPRPAPRPSEPAVTSR---------ARRPDAPPQSARP---RAPVDDRGDPRGPAPPSPLPPDTHapdpPPPSPSPAA 2635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 325 DFPESAATEVLRLPEQPVEVPL---------EIADSSMTRPQELLELPKTTPLELPESSVASVMELPGPPATSmlELQGP 395
Cdd:PHA03247 2636 NEPDPHPPPTVPPPERPRDDPApgrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP--EPAPH 2713
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 396 PVTPVLELPGPSATPVPELPGPLSTPVPEllgppatAVPELPGPSVTSVPQLSQELPGLPAPSMGLEPPQEVPEPPVMAQ 475
Cdd:PHA03247 2714 ALVSATPLPPGPAAARQASPALPAAPAPP-------AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 476 ELPGLPVVTAAVELPGQPAVTVAMELTEQPVTTTELEQSVGMTTVEHPGQPEVTTATGLLGQPEAAMVLELPGQPVATTA 555
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 556 lelPGQPSVTgVPELPGLPSATR----ALELSGQPVATGALELPGQLMAAGALEFAGQSgaagalELLGQPLATGVLELP 631
Cdd:PHA03247 2867 ---PSRSPAA-KPAAPARPPVRRlarpAVSRSTESFALPPDQPERPPQPQAPPPPQPQP------QPPPPPQPQPPPPPP 2936
|
....*....
gi 1926162203 632 GQPGAPELP 640
Cdd:PHA03247 2937 PRPQPPLAP 2945
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
176-446 |
9.51e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.84 E-value: 9.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 176 LSETSESAVVLEPPILSMEiSEPHTLETLKPATKTAELSVASASVISVQSEQSVAVMLEPSTTKVLDsfaTAPVPTTAVV 255
Cdd:NF033839 113 LNKIVESTSKSQLQKLMME-SQSKVDEAVSKFEKDSSSSSSSGSSTKPETPQPENPEHQKPTTPAPD---TKPSPQPEGK 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 256 lKSSEPVVTMSVEYQTKSVLKSLESIPPEPSKIMLLEP------PVAKVLEPSETLVSSEIP---TEVHPEPSTSTTMDF 326
Cdd:NF033839 189 -KPSVPDINQEKEKAKLAVATYMSKILDDIQKHHLQKEkhrqivALIKELDELKKQALSEIDnvnTKVEIENTVHKIFAD 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 327 PESAATEVLR-----LPEQPVEVPLEIADSSMTRPQELLELPKTTPLELPESSVASVMELPGPPATSMLELQGPPVTPVL 401
Cdd:NF033839 268 MDAVVTKFKKgltqdTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQL 347
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1926162203 402 ELPGPSATPVPELPGPLSTPVPELLGPPATAVPELPGPSVTSVPQ 446
Cdd:NF033839 348 ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPE 392
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
367-450 |
3.95e-04 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 42.37 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 367 PLELPESSVASVMELPGPPATSMLelqgPPVTPVLELPGPSATPVPELPGPlsTPVPELLGPPATAVPELPGPSVTSVPQ 446
Cdd:pfam12526 31 PPESAHPDPPPPVGDPRPPVVDTP----PPVSAVWVLPPPSEPAAPEPDLV--PPVTGPAGPPSPLAPPAPAQKPPLPPP 104
|
....
gi 1926162203 447 LSQE 450
Cdd:pfam12526 105 RPQR 108
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1477-1595 |
6.10e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.09 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1477 AVTIPEPSQQSTLELPAMAvselPVMAVPEPLAVAVPAP-----AVMAVPELPAVVVAEHPAVAVPEYPAVAVPEYPAVA 1551
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAA----APAAAPVAQAAAAPAPaaapaAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1926162203 1552 VLDPPAESLLEPMALAEPEHVTIPVPHVSALEPTVPGLEPTVSV 1595
Cdd:PRK14951 445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
|
|
| Lepto_longest |
TIGR04388 |
putative large structural protein; Members of this family are restricted so far to the lineage ... |
646-1042 |
6.92e-04 |
|
putative large structural protein; Members of this family are restricted so far to the lineage Leptospira, where they may be the longest protein encoded by the genome. Two or three paralogs are often found. The seed alignment for this model includes sequences with significant length variability, and stops adjacent to an intein feature most full-length members of this family share. Oddly, members closely related in sequence up to the start of the intein (see TIGR01445) usually show very little sequence similarity C-terminal to the end of the intein (see TIGR01443). [Unknown function, General]
Pssm-ID: 275181 [Multi-domain] Cd Length: 1134 Bit Score: 45.27 E-value: 6.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 646 TVALEISVQSVVTTELSTMTVSQSLEVPSTTALESYNTV----------------------AQELPTTLVGETSVTVGVD 703
Cdd:TIGR04388 435 TFWYSINFQVQDLNAYANATTWNGFVSQLNSELHSWNNVtpsitnwegqvaayqaqyaawhAQAQTYIDSLQQSYTTGVQ 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 704 PLMAQESHMLasntmethmlasNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQMLATSSMDSQMLATSSmDSQML 783
Cdd:TIGR04388 515 DLQSQEQSWL------------ANMGNQFQAQSSFAQASNDLDNLKTQQILDSLSPKISQVNLPSSSDVLSRNA-DAPVP 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 784 ATSSMDSqmlATSSMDSQMLATS--SMDSQmLATSSMDSQMLATSSMDSQMLATSTMDSQ---MLATSSMDSQMLATSSM 858
Cdd:TIGR04388 582 DQSSLNN---VLSIFQQSLMGASnlALENQ-LNNQAIDEKLNAIQGIASSLGSNAVVDSHgniVYTTVIEDGHAKLKAGG 657
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 859 DsqmlATSSMDSQmlatSSMDSQMLATSSMDSQMLATSSMdSQMLATSSMDSQMLAT-----SSMDSQMLATSSMDSQML 933
Cdd:TIGR04388 658 D----ATNASDYE----ANTTDRVVTIAAPATIAIGAAAA-GDLFQSWDTGSVVSQNftnlgSFNSSYNSTINSLNHQVA 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 934 ATSSMDSQMLATSSMDSQMLATSSMDSQMLAT---------SSMDSQML-ATSSMDSQMLATST-----MDSQMLatSTM 998
Cdd:TIGR04388 729 ALNSLNAKNDSSFQEDAQAKASIASLIQSLAQavllggsfgSWVKGQIQdKVNSAIATALANTTgmspdMAAQLV--SWF 806
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1926162203 999 DSQMLATSSMDSQMLASGAMDSQMLASGSMD----AQMLASGTMDAQM 1042
Cdd:TIGR04388 807 EKQQAAKKAKAKARTEDITSGVVVVASIALSflagPEMLAVGQAALQA 854
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
198-460 |
8.92e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 8.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 198 PHTLETLKPATKTAELSVASASVISVQSEQSVAVMLEPSTTKVLDSFATAPVPTTAVVLKSSEPVVTMSVEYQTKSVLKS 277
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 278 LESIPPEPSkimllePPVAKVLEPSETLVSSEIPTEVHPEPSTSTtmdfPESAATevlrlPEQPVEVPLE----IADSSM 353
Cdd:PHA03247 2797 SLPSPWDPA------DPPAAVLAPAAALPPAASPAGPLPPPTSAQ----PTAPPP-----PPGPPPPSLPlggsVAPGGD 2861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 354 TRPQELLELPKTTPLELPESSVASVMELPGPPATSMLEL--QGPPVTPVLELPGPSATPVPELPGPLSTPVPELLGPPAT 431
Cdd:PHA03247 2862 VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALppDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
|
250 260
....*....|....*....|....*....
gi 1926162203 432 AVPELPGPSVTSVPQlsqelPGLPAPSMG 460
Cdd:PHA03247 2942 PLAPTTDPAGAGEPS-----GAVPQPWLG 2965
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
223-587 |
1.08e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.37 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 223 VQSEQSVAVMLEPSTTKVLDSFATAPVPTTAVVLKSSEPVVTMSVEYQTKSV--LKSLESIPP-EPSKIMLLEPPVAKVL 299
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAapHTLIQQTPTlHPQRLPSPHPPLQPMT 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 300 EPSEtlvSSEIPTEVHPEPStsttmdfpesaatevLRLPEQPVEVPLEIADSSMTRPqellelpkTTPLELPESSVASVM 379
Cdd:pfam03154 254 QPPP---PSQVSPQPLPQPS---------------LHGQMPPMPHSLQTGPSHMQHP--------VPPQPFPLTPQSSQS 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 380 ELPGPPATSM-LELQGPPVTPVLELPGPSATPVPELP-GPLSTPVPELLGPPATAVPELPG------PSVTSVPQLSQEL 451
Cdd:pfam03154 308 QVPPGPSPAApGQSQQRIHTPPSQSQLQSQQPPREQPlPPAPLSMPHIKPPPTTPIPQLPNpqshkhPPHLSGPSPFQMN 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 452 PGLPAPSmGLEPPQEVPEPPVMAQELPGLPVVTAAVELPGQPAvtvamelteQPVTTTElEQSVGMTTVEHPgqpevtTA 531
Cdd:pfam03154 388 SNLPPPP-ALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPA---------QPPVLTQ-SQSLPPPAASHP------PT 450
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1926162203 532 TGLLGQPEAAMVLELPGQPVATTALELPGQPSVTGVPELPGLPSATRALELSGQPV 587
Cdd:pfam03154 451 SGLHQVPSQSPFPQHPFVPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPV 506
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1461-1592 |
1.23e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.93 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1461 ASGHTASEVSISLMEPAVTIPEPSQQStleLPAMAvselPVMAVPEPLAVAVPAPAVMAVPELPAVVVAEHPAVAVPEYP 1540
Cdd:PRK14951 369 AAEAAAPAEKKTPARPEAAAPAAAPVA---QAAAA----PAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1926162203 1541 AVAVPEYPAVAVLDPPAESLLEPMALAEPEHVTIPVPHVSAlePTVPGLEPT 1592
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA--PAAARLTPT 491
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
363-505 |
1.42e-03 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 43.91 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 363 PKTTPLELPESSVASVMELPG--PPATSMLELQG--PPVTPVLELPGPSATPVPELPGPLstPVPELLGPPATAVPELPG 438
Cdd:TIGR01645 326 PRAQSPATPSSSLPTDIGNKAvvSSAKKEAEEVPplPQAAPAVVKPGPMEIPTPVPPPGL--AIPSLVAPPGLVAPTEIN 403
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1926162203 439 PSVTSVPQLSQELPGLPA------PSMGLEPPQEVPEPPVMAQELPGLPVVTAAVELPGQPAVTVAMELTEQP 505
Cdd:TIGR01645 404 PSFLASPRKKMKREKLPVtfgaldDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQP 476
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
217-445 |
2.34e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.54 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 217 SASVISVQSEQSVAVMLEPSTTkvldsfaTAPVPTTAVVLksSEPVVtmsvEYQTKSVLKSLE-SIPPEPSKImllePPV 295
Cdd:PRK10263 321 AVAAAATTATQSWAAPVEPVTQ-------TPPVASVDVPP--AQPTV----AWQPVPGPQTGEpVIAPAPEGY----PQQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 296 AKVLEPSETLvSSEIPTEVHPEPSTSTTMDFPESAATEVLRLPEQPVEVPLEIADSSMTRPQELLELPKTTPLELPESSV 375
Cdd:PRK10263 384 SQYAQPAVQY-NEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTY 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 376 ASVMELPGPPATSMLELQGPPV--------TPVLELPGPSATPV-------------PELPGPLSTPVPELLGPPATAVP 434
Cdd:PRK10263 463 QTEQTYQQPAAQEPLYQQPQPVeqqpvvepEPVVEETKPARPPLyyfeeveekrareREQLAAWYQPIPEPVKEPEPIKS 542
|
250
....*....|.
gi 1926162203 435 ELPGPSVTSVP 445
Cdd:PRK10263 543 SLKAPSVAAVP 553
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1378-1584 |
3.88e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.56 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1378 VSASEPSVLTSEAAVTAPEPPLEPESSVMSTPAESAVATeeheivperpvtyisensmlAEPSMLTSEPTIMSETAETFD 1457
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA--------------------AAARAVAAAPARRSPAPEALA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1458 SMRASGHTASEVSISLMEPAVTIPEPSQQstlelPAMAVSELPVMAVPEPLAVAVPAPAVMAVP-------ELPAVVVAE 1530
Cdd:PRK12323 435 AARQASARGPGGAPAPAPAPAAAPAAAAR-----PAAAGPRPVAAAAAAAPARAAPAAAPAPADddpppweELPPEFASP 509
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1926162203 1531 HPAVAVPEYPAVAVPEY--PAVAVLDPPAESLLEPMALAEPEHVTIPVPHVSALEP 1584
Cdd:PRK12323 510 APAQPDAAPAGWVAESIpdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1348-1589 |
4.78e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.38 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1348 ALPPEESVSLPETVSQNEISEPSALLANYSVSASepsVLTSEAAVTAPEPPLEPESSVMSTPAESAVateehEIVPERPV 1427
Cdd:PRK10263 286 AADPDDVLFSGNRATQPEYDEYDPLLNGAPITEP---VAVAAAATTATQSWAAPVEPVTQTPPVASV-----DVPPAQPT 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1428 TyisenSMLAEPSMLTSEPTIMSEtAETFDSMRASGHTASEVSISLMEPAvtipePSQQSTLELPAMAVSELPVMAVPEP 1507
Cdd:PRK10263 358 V-----AWQPVPGPQTGEPVIAPA-PEGYPQQSQYAQPAVQYNEPLQQPV-----QPQQPYYAPAAEQPAQQPYYAPAPE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1508 LAVAVPAPAvmAVPELPAVVVAEHPAVAVPEYPAVAVPEYPAVAVLDPPAESLLEPMALAEPEHVTIPVPHVSALEPTVP 1587
Cdd:PRK10263 427 QPAQQPYYA--PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARP 504
|
..
gi 1926162203 1588 GL 1589
Cdd:PRK10263 505 PL 506
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
234-457 |
9.67e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.21 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 234 EPSTTK-VLDSFATAPVPTTAVVLKSSEPVVTmsveyQTKSVLKSLESIP-PEPSKIMLLEPPVAKVLEPsETLVSSEIP 311
Cdd:PHA03378 552 EPASTEpVHDQLLPAPGLGPLQIQPLTSPTTS-----QLASSAPSYAQTPwPVPHPSQTPEPPTTQSHIP-ETSAPRQWP 625
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 312 TEVHPEPSTSTTMDfPESAATEVLRLPEQPVEVPLEIADSSMTRPQELLELPKTT--PLELPESSVASVMELPGPPATSM 389
Cdd:PHA03378 626 MPLRPIPMRPLRMQ-PITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTgaNTMLPIQWAPGTMQPPPRAPTPM 704
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1926162203 390 LELQGPPV------TPVLELPGPSATP-VPELPGPLSTPVPELLGPPATAVPELPGPSVTSVPQLSqelPGLPAP 457
Cdd:PHA03378 705 RPPAAPPGraqrpaAATGRARPPAAAPgRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAA---PGAPTP 776
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
1329-1548 |
9.80e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.18 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1329 LSTEQSALTAENTWPTEVPALPpeeSVSLPETVSQNEISEPSALLANySVSASEPSVLTSEAAVTAPEPPLEPESSVMST 1408
Cdd:PRK10811 847 VVRPQDVQVEEQREAEEVQVQP---VVAEVPVAAAVEPVVSAPVVEA-VAEVVEEPVVVAEPQPEEVVVVETTHPEVIAA 922
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1926162203 1409 PAesavaTEEHEIVPErpvtyisENSMLAEPSMLTSEPTIMSETAETFDsmrasgHTASEVsislmePAVTIPEPSQQST 1488
Cdd:PRK10811 923 PV-----TEQPQVITE-------SDVAVAQEVAEHAEPVVEPQDETADI------EEAAET------AEVVVAEPEVVAQ 978
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1926162203 1489 LELPAMAVSELPVMAVPeplavavPAPAVMAVPELPAVVVAEHPAVA------VPEYpavaVPEYP 1548
Cdd:PRK10811 979 PAAPVVAEVAAEVETVT-------AVEPEVAPAQVPEATVEHNHATApmtrapAPEY----VPEAP 1033
|
|
| |
