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Conserved domains on  [gi|1931720862|ref|XP_037490991|]
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cytochrome b (mitochondrion) [Plasmodium vinckei vinckei]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 13-354 6.95e-102

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 305.17  E-value: 6.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                         330       340
                  ....*....|....*....|....*....
gi 1931720862 327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156  322 VILLtWIGARPVEEPYILTGQILTILYFL 350
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 6.95e-102

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 305.17  E-value: 6.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                         330       340
                  ....*....|....*....|....*....
gi 1931720862 327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156  322 VILLtWIGARPVEEPYILTGQILTILYFL 350
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 3.02e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 256.26  E-value: 3.02e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  12 HLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnILILFLIQSIFGVI 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 239 PLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIP--SKNAGLVIVVASLQLLFLLAeqrnlttIIQFKMVFSAREYS 316
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP-------FLDRSPVRSPRYRP 335

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1931720862 317 VPIIWFM--CSFYALLWIGCQLPqDIFILYGRLFIILFFSSGLFSL 360
Cdd:COG1290   336 VRTALGVafIVFFIVLTILGANP-PIATLLGSINTVTYFAFFLIVL 380
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 7.16e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 189.50  E-value: 7.16e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   8 LVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:cd00284    85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 9.62e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 165.63  E-value: 9.62e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1931720862 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-354 6.95e-102

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 305.17  E-value: 6.95e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLA-EQRNLTTIIQFKMVFSAreysvpIIWFMCSF 326
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPfTNKSKFRGNQFYPINKI------LFWIFVNI 321

                         330       340
                  ....*....|....*....|....*....
gi 1931720862 327 YALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00156  322 VILLtWIGARPVEEPYILTGQILTILYFL 350
CYTB MTH00191
cytochrome b; Provisional
 6-361 2.08e-99

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 299.14  E-value: 2.08e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00191    8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNY-SYLYLpLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYT 160
Cdd:MTH00191   88 FICIYLHIGRGLYYgSYLNK-ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigdDLVQWLWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00191  167 VDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00191  247 LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLpllhtSKQRSNTFRPLTQVVF---- 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1931720862 315 ysvpiiWFM-CSFYALLWIGCQLPQDIFILYGRLFIILFFSSGLFSLV 361
Cdd:MTH00191  323 ------WLWvANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00145
cytochrome b; Provisional
 6-355 7.14e-98

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 295.66  E-value: 7.14e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00145   12 LKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYT 160
Cdd:MTH00145   92 FICIYLHIGRGLYYgSYLMQH-TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPyvgkMLVEWVWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00145  171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnlttiIQFKMVFSAREYSVP- 318
Cdd:MTH00145  251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPL-------LHVGKFRSLSFYPLNq 323

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1931720862 319 -IIWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFFSS 355
Cdd:MTH00145  324 vLFWIFVGNFFILtWIGACPVEEPYETIGQVFTVLYFLF 362
CYTB MTH00119
cytochrome b; Provisional
 8-360 3.48e-95

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 288.72  E-value: 3.48e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   8 LVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:MTH00119   14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  88 LTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVS 162
Cdd:MTH00119   94 CIYLHIGRGLYYgSYLYKE-TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFSVD 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLS 241
Cdd:MTH00119  173 NPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 242 HPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrNLTTIIQFKMVFsaREYSVPIIW 321
Cdd:MTH00119  253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMP---FLHTSKQRSMTF--RPLSQLLFW 327

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1931720862 322 FMCS-FYALLWIGCQLPQDIFILYGRLFIILFFSSGLFSL 360
Cdd:MTH00119  328 TLVAnLLILTWIGSQPVEHPFIIIGQLASILYFTILLILF 367
CYTB MTH00016
cytochrome b; Validated
 13-354 3.88e-92

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 281.18  E-value: 3.88e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00016   19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00016   99 IGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDNATLTR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAI 247
Cdd:MTH00016  179 FFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFI 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 248 IVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrnlttiIQFKMVFSAREYSVP---IIWFMC 324
Cdd:MTH00016  259 PANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP--------FIFKQKFRGLSFYPLnqiLFWLLV 330

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1931720862 325 SFYALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00016  331 SNFLLLtWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00131
cytochrome b; Provisional
 7-354 3.02e-89

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 273.84  E-value: 3.02e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   7 NLVKTH---------LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYM 77
Cdd:MTH00131    3 SLRKTHpllkiandaLVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  78 HATGASLVFFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLV 152
Cdd:MTH00131   83 HANGASFFFICIYLHIGRGLYYgSYLYKE-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 153 IWLCGGYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLI 231
Cdd:MTH00131  162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 232 QSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQF 306
Cdd:MTH00131  242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVpilhtSKQRGLTFRPLT 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1931720862 307 KMVFSAREYSVPIiwfmcsfyaLLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00131  322 QFLFWTLVADVLI---------LTWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00100
cytochrome b; Provisional
 6-354 3.41e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 273.44  E-value: 3.41e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTH---------LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRY 76
Cdd:MTH00100    2 TNIRKTHplmkiinhsFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  77 MHATGASLVFFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SL 151
Cdd:MTH00100   82 LHANGASMFFICLFLHVGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 152 VIWLCGGYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFL 230
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 231 IQSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnLTTIIQFKMVF 310
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPL---LHTSKQRSMMF 317

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1931720862 311 saREYSVPIIWFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00100  318 --RPLSQCLFWLLVAdLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00074
cytochrome b; Provisional
 6-353 4.56e-87

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 268.09  E-value: 4.56e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00074   12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYT 160
Cdd:MTH00074   92 FICIYLHIGRGLYYgSYMYKE-TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00074  171 VDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00074  251 LGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIpmlhtSKQRSLMFRPLTQILF---- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1931720862 315 ysvpiiWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFF 353
Cdd:MTH00074  327 ------WLLVANTLILtWIGGQPVEDPFIEIGQAASILYF 360
CYTB MTH00034
cytochrome b; Validated
 6-358 2.01e-83

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 258.87  E-value: 2.01e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00034   11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:MTH00034   91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00034  171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEqrnLTTIIQFKMVFsaREYSVPII 320
Cdd:MTH00034  251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPI---LHTSNNQSSTF--RPLSQIAF 325

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1931720862 321 WFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFSSGLF 358
Cdd:MTH00034  326 WLLIAtFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-360 3.02e-82

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 256.26  E-value: 3.02e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  12 HLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPvigtWLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnILILFLIQSIFGVI 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 239 PLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIP--SKNAGLVIVVASLQLLFLLAeqrnlttIIQFKMVFSAREYS 316
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP-------FLDRSPVRSPRYRP 335

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1931720862 317 VPIIWFM--CSFYALLWIGCQLPqDIFILYGRLFIILFFSSGLFSL 360
Cdd:COG1290   336 VRTALGVafIVFFIVLTILGANP-PIATLLGSINTVTYFAFFLIVL 380
CYTB MTH00224
cytochrome b; Provisional
 6-354 7.38e-82

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 254.85  E-value: 7.38e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00224   12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsarey 315
Cdd:MTH00224  252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILpltsvMNKRSLPFYPLNQLLF----- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1931720862 316 svpiiW-FMCSFYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00224  327 -----WlLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00022
cytochrome b; Validated
 6-354 6.06e-81

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 252.31  E-value: 6.06e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00022   10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNY-SYLYLPLsWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYT 160
Cdd:MTH00022   90 FLCLYIHIGRGLYYgGYLKFHV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIP 239
Cdd:MTH00022  169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsare 314
Cdd:MTH00022  249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLpllhtSWLRGLTFRPLGRMAF---- 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1931720862 315 ysvpiiWFMCSFYALL-WIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00022  325 ------WFLIVDFILLtWIGSQVVEEPFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 6-354 1.57e-80

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 251.55  E-value: 1.57e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00053   12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPL 240
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 241 SHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAeqrnLTTIIQFKMVfSAREYSVPII 320
Cdd:MTH00053  252 GDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP----YLHKSRFRGL-SFRPLSKILF 326

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1931720862 321 WFMCS-FYALLWIGCQLPQDIFILYGRLFIILFFS 354
Cdd:MTH00053  327 WFLVGdFFLLTWIGGQPVEEPYILIGQIASIFYFA 361
CYTB MTH00086
cytochrome b; Provisional
 7-364 7.52e-75

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 235.99  E-value: 7.52e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   7 NLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVF 86
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  87 FLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVS 162
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLsldVKGFNNILI--LFLIQSIFGVIP 239
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYW---NKDAYNIIFwlVFIIFSLFYPFN 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 240 LSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMVFSareysvpI 319
Cdd:MTH00086  238 LGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKFL-------V 310

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1931720862 320 IWFMCSFYALLWIGCQLPQDIFILYGRLFIILFFSSGLFSLVHYK 364
Cdd:MTH00086  311 FSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
CYTB MTH00033
cytochrome b; Provisional
 13-353 2.82e-68

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 219.81  E-value: 2.82e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKR 168
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGY-DTALKIPFYPNLLSLDVKGFnniLILFLIQSIFGVIP-----LSH 242
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 243 PDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLL-----AEQRNLTTIIQFKMVFsareysv 317
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMpildrSKIRSLTFNPTGKFFF------- 324

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1931720862 318 piiWFMC-SFYALLWIG-CQLPQDIFILYGRLFIILFF 353
Cdd:MTH00033  325 ---WFIVgDFIILTWIGsAPAGADPYVLIGRIATIFYF 359
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 7.16e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 189.50  E-value: 7.16e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   8 LVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:cd00284    85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 6-352 4.11e-50

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 171.70  E-value: 4.11e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862   6 INLVKTHLINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTV 161
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLgydtalkipFYPNLLSlDVKGFN------NILILFLIQSIF 235
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 236 GVIPLSHPDNAIIVNTY------VTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMV 309
Cdd:MTH00046  232 VFWLFVSPDLVLDIEAYleadplVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWVPTFNGSSVYSVWRQVN 311

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1931720862 310 FsareysvpiiWFMCS-FYALLWIGCQLPQDIFILYGRLFIILF 352
Cdd:MTH00046  312 F----------WLIVSlFFSLSYLGGCHPEYPYLLISQLFSVLM 345
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 9.62e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 165.63  E-value: 9.62e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  13 LINYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1931720862 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 24-200 6.88e-26

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 103.64  E-value: 6.88e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  24 FLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRGLNYSYLY 103
Cdd:PRK03735   40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 104 LP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTIKRFFVLH-FIL 176
Cdd:PRK03735  120 KPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPvigdFIKTLLRGGEIVGAQTLTRFFAIHvFFL 199

                         170       180
                  ....*....|....*....|....
gi 1931720862 177 PFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:PRK03735  200 PWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
250-352 4.05e-23

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 92.54  E-value: 4.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 250 NTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVASLQLLFLLAE-QRNLTTIIQFKMVFSAreysvpIIW-FMCSFY 327
Cdd:pfam00032   3 NPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLFKI------FFWlFVVDFV 76

                          90       100
                  ....*....|....*....|....*
gi 1931720862 328 ALLWIGCQLPQDIFILYGRLFIILF 352
Cdd:pfam00032  77 VLGWLGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-243 9.91e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 90.76  E-value: 9.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  83 SLVFFLTYLHILRGLNY-SYLYLP-LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLC 156
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTgAYRKPReLNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPvvgtWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 157 GGYTVSDPTIKRFFVLHF-ILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDVKGFNNILILFLIQSI 234
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1931720862 235 FGVIPLSHP 243
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 19-200 6.91e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 89.78  E-value: 6.91e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  19 PLNINFLWNYGFLLGIIFFIQILTGVFLASRYSPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRgln 98
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862  99 ysyLYLP--------LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSGIP----SLVIWLCGGYTVSDPTI 166
Cdd:CHL00070  104 ---VYLTggfkkpreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPvigsPLVELLRGSVSVGQSTL 180

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1931720862 167 KRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:CHL00070  181 TRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-348 9.75e-18

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 79.23  E-value: 9.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 207 KIPFYPNLLSLDVKGFNNILILFLIQSIFGVIPLSHPDNAIIVNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVA 286
Cdd:cd00290    11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1931720862 287 SLQLLFLLAEQRNLTTIIQFKMVfsareYSVPIIWFMCSFYALLWIGCQLPQDIFILYGRLF 348
Cdd:cd00290    91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
petD CHL00058
cytochrome b6/f complex subunit IV
 223-286 9.06e-06

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 45.38  E-value: 9.06e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1931720862 223 NNILILF---LIQSIFGVIPLSHPDNAII---VNTYVTPLQIVPEWYFLPFYAMLKTIPSKNAGLVIVVA 286
Cdd:CHL00058   34 NDLLYIFpvvILGTIACNVGLAVLEPSMIgepADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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