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Conserved domains on  [gi|1953067600|ref|XP_038391400|]
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LOW QUALITY PROTEIN: transmembrane protein 125 [Canis lupus familiaris]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMEM125 super family cl20978
TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has ...
77-148 3.73e-12

TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 55 and 232 amino acids in length.


The actual alignment was detected with superfamily member pfam15109:

Pssm-ID: 464508  Cd Length: 111  Bit Score: 61.38  E-value: 3.73e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953067600  77 LVVGCG*SGTALLSSTSSCLIKWWLVEG*YFCLLPLLVLVKQMISSTTQDMNYTYQPHYVSLICSCGAVSVL 148
Cdd:pfam15109  27 LILGLGLGGVGLLSTTSSRSGEWRLAVGTTLCLLALLVLLKQLLSSAVQDMNCVRSRRRIDQLRSGGGADPL 98
 
Name Accession Description Interval E-value
TMEM125 pfam15109
TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has ...
77-148 3.73e-12

TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 55 and 232 amino acids in length.


Pssm-ID: 464508  Cd Length: 111  Bit Score: 61.38  E-value: 3.73e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953067600  77 LVVGCG*SGTALLSSTSSCLIKWWLVEG*YFCLLPLLVLVKQMISSTTQDMNYTYQPHYVSLICSCGAVSVL 148
Cdd:pfam15109  27 LILGLGLGGVGLLSTTSSRSGEWRLAVGTTLCLLALLVLLKQLLSSAVQDMNCVRSRRRIDQLRSGGGADPL 98
 
Name Accession Description Interval E-value
TMEM125 pfam15109
TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has ...
77-148 3.73e-12

TMEM125 protein family; The function of this family of transmembrane proteins, TMEM125, has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 55 and 232 amino acids in length.


Pssm-ID: 464508  Cd Length: 111  Bit Score: 61.38  E-value: 3.73e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1953067600  77 LVVGCG*SGTALLSSTSSCLIKWWLVEG*YFCLLPLLVLVKQMISSTTQDMNYTYQPHYVSLICSCGAVSVL 148
Cdd:pfam15109  27 LILGLGLGGVGLLSTTSSRSGEWRLAVGTTLCLLALLVLLKQLLSSAVQDMNCVRSRRRIDQLRSGGGADPL 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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