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Conserved domains on  [gi|1958681618|ref|XP_038949788|]
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PCNA-associated factor-like [Rattus norvegicus]

Protein Classification

PAF domain-containing protein( domain architecture ID 11238956)

PAF domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAF pfam15715
PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in ...
 17-111 2.18e-26

PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in p15(PAF).


:

Pssm-ID: 464819  Cd Length: 120  Bit Score: 94.57  E-value: 2.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681618  17 RKVVASQAPRKVLGFSTFVTN-SSGSSRKVENKNAGGNSVFARPTPKWQKCIREFFRLSPKDSVKEKQIL---EEAGSSG 92
Cdd:pfam15715  12 RKAVAAKAPRKSLGASPSSSStSSSSTHGKKKKYAGGNPVCPRPTPAWQKGITEFFSKSPKQDEKENQIPsddEEAGSSG 91

                          90       100
                  ....*....|....*....|....*...
gi 1958681618  93 LGKSRRKPCP---------WQPDHRDDE 111
Cdd:pfam15715  92 TGKASRKSCPldgendsdtEQEDIEEDE 119
 
Name Accession Description Interval E-value
PAF pfam15715
PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in ...
 17-111 2.18e-26

PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in p15(PAF).


Pssm-ID: 464819  Cd Length: 120  Bit Score: 94.57  E-value: 2.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681618  17 RKVVASQAPRKVLGFSTFVTN-SSGSSRKVENKNAGGNSVFARPTPKWQKCIREFFRLSPKDSVKEKQIL---EEAGSSG 92
Cdd:pfam15715  12 RKAVAAKAPRKSLGASPSSSStSSSSTHGKKKKYAGGNPVCPRPTPAWQKGITEFFSKSPKQDEKENQIPsddEEAGSSG 91

                          90       100
                  ....*....|....*....|....*...
gi 1958681618  93 LGKSRRKPCP---------WQPDHRDDE 111
Cdd:pfam15715  92 TGKASRKSCPldgendsdtEQEDIEEDE 119
 
Name Accession Description Interval E-value
PAF pfam15715
PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in ...
 17-111 2.18e-26

PCNA-associated factor histone like domain; This domain corresponds to a histone like fold in p15(PAF).


Pssm-ID: 464819  Cd Length: 120  Bit Score: 94.57  E-value: 2.18e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681618  17 RKVVASQAPRKVLGFSTFVTN-SSGSSRKVENKNAGGNSVFARPTPKWQKCIREFFRLSPKDSVKEKQIL---EEAGSSG 92
Cdd:pfam15715  12 RKAVAAKAPRKSLGASPSSSStSSSSTHGKKKKYAGGNPVCPRPTPAWQKGITEFFSKSPKQDEKENQIPsddEEAGSSG 91

                          90       100
                  ....*....|....*....|....*...
gi 1958681618  93 LGKSRRKPCP---------WQPDHRDDE 111
Cdd:pfam15715  92 TGKASRKSCPldgendsdtEQEDIEEDE 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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