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Conserved domains on  [gi|1958769889|ref|XP_038963649|]
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coiled-coil domain-containing protein 91 isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5401 super family cl38662
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 110-422 3.09e-09

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


The actual alignment was detected with superfamily member pfam17380:

Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 58.98  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 110 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 180
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 181 EDMRKaghEALSIIVDEYKALLQ---------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 242
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERlqmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 243 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 322
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 323 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 402
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583

                         330       340
                  ....*....|....*....|
gi 1958769889 403 LSCAQKQLSAliATEPVDIE 422
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 110-422 3.09e-09

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 58.98  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 110 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 180
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 181 EDMRKaghEALSIIVDEYKALLQ---------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 242
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERlqmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 243 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 322
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 323 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 402
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583

                         330       340
                  ....*....|....*....|
gi 1958769889 403 LSCAQKQLSAliATEPVDIE 422
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 155-394 1.09e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.25  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 155 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 234
Cdd:COG1196   234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 235 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 314
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 315 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 394
Cdd:COG1196   394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
PTZ00121 PTZ00121
MAEBL; Provisional
 123-393 1.50e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.91  E-value: 1.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 200
Cdd:PTZ00121  1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  201 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 280
Cdd:PTZ00121  1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  281 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 354
Cdd:PTZ00121  1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1958769889  355 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 393
Cdd:PTZ00121  1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 113-371 1.00e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  113 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEa 190
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE- 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  191 lsiiVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLG 270
Cdd:TIGR02168  342 ----LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARL 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  271 KCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEA 350
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQ 488

                          250       260
                   ....*....|....*....|.
gi 1958769889  351 VKAAIAEEQRRSEKAMEEAVK 371
Cdd:TIGR02168  489 ARLDSLERLQENLEGFSEGVK 509
 
Name Accession Description Interval E-value
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 110-422 3.09e-09

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 58.98  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 110 VSNSQLRQKISSLET-KLKASEEEK----QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQaRYREL----QEKHKQEL 180
Cdd:pfam17380 284 VSERQQQEKFEKMEQeRLRQEKEEKarevERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELerirQEERKREL 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 181 EDMRKaghEALSIIVDEYKALLQ---------SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQH---------QRLLEV 242
Cdd:pfam17380 363 ERIRQ---EEIAMEISRMRELERlqmerqqknERVRQELEAARKVKILEEERQRKIQQQKVEMEQiraeqeearQREVRR 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 243 LDTEKELLKEKIQEAlTQQSQEQKETLGKclQEEMQKNKetlesavKLEKEAMKDVITKAVEEERENLEKVHAEEREMWK 322
Cdd:pfam17380 440 LEEERAREMERVRLE-EQERQQQVERLRQ--QEEERKRK-------KLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 323 TEhardqERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAvKRTRDELVEYVREQRRLDQVTRQRSLSSLELF 402
Cdd:pfam17380 510 EE-----ERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER-RRIQEQMRKATEERSRLEAMEREREMMRQIVE 583

                         330       340
                  ....*....|....*....|
gi 1958769889 403 LSCAQKQLSAliATEPVDIE 422
Cdd:pfam17380 584 SEKARAEYEA--TTPITTIK 601
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 155-394 1.09e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.25  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 155 LKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHA 234
Cdd:COG1196   234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 235 QHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVH 314
Cdd:COG1196   314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 315 AEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 394
Cdd:COG1196   394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 114-389 6.69e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 6.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 114 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSI 193
Cdd:COG1196   243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELE-LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 194 IVDEYKALLQ-SSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRL-----LEVLDTEKELLKEKIQEALTQQSQEQKE 267
Cdd:COG1196   322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaeLAEAEEELEELAEELLEALRAAAELAAQ 401

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 268 TLGkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEkvhAEEREMWKTEHARDQERVAEAIQAAVQEQQRMS 347
Cdd:COG1196   402 LEE--LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA---LEEAAEEEAELEEEEEALLELLAELLEEAALLE 476

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1958769889 348 QEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQ 389
Cdd:COG1196   477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
PTZ00121 PTZ00121
MAEBL; Provisional
 123-393 1.50e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.91  E-value: 1.50e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKA-- 200
Cdd:PTZ00121  1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAde 1514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  201 LLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKEllKEKIQEAltQQSQEQKETLGKCLQEEMQKN 280
Cdd:PTZ00121  1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE--KKKAEEA--KKAEEDKNMALRKAEEAKKAE 1590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  281 KETLESAVKL--EKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAvQEQQRMSQEAVKAA 354
Cdd:PTZ00121  1591 EARIEEVMKLyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaeekKKAEELKKA-EEENKIKAAEEAKK 1669

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1958769889  355 IAEEQRRSEKAM--EEAVKRTRDELVEYVREQRRLDQVTRQ 393
Cdd:PTZ00121  1670 AEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 156-417 1.62e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.32  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 156 KEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEykALLQSSVKQQLDAIEKQYVSAIEKQAHrcEELLHAQ 235
Cdd:COG1196   221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQAE--EYELLAE 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 236 HQRLLEVLDTEKELLKEkIQEALTQQSQEQKETLGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA 315
Cdd:COG1196   297 LARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 316 EEREMWKtEHARDQERVAEAIQAAVQEQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRS 395
Cdd:COG1196   376 EAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454

                         250       260
                  ....*....|....*....|..
gi 1958769889 396 LSSLELFLSCAQKQLSALIATE 417
Cdd:COG1196   455 EEEEEALLELLAELLEEAALLE 476
PTZ00121 PTZ00121
MAEBL; Provisional
 125-394 7.60e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 7.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  125 KLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQAryrelqEKHKQELEDMRKAghEALSIIVDEYKALLQS 204
Cdd:PTZ00121  1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA------EEDKKKADELKKA--AAAKKKADEAKKKAEE 1429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  205 SVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETL 284
Cdd:PTZ00121  1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  285 ESAVKLEK--EAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQERVAEAIQAAVQEQQRMSQEAVKAAI--AEEQR 360
Cdd:PTZ00121  1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkAEEAK 1587

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1958769889  361 RSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQR 394
Cdd:PTZ00121  1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
PTZ00121 PTZ00121
MAEBL; Provisional
 123-372 2.29e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 2.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQdaVSFQARYRELQEKHKQElEDMRKAGHEAlsiivDEYKALL 202
Cdd:PTZ00121  1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE--LKKAEEKKKAEEAKKAE-EDKNMALRKA-----EEAKKAE 1590

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  203 QSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKE 282
Cdd:PTZ00121  1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  283 TLEsavKLEKEAMKdvitKAVEEERENLEKVHAEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEE 358
Cdd:PTZ00121  1671 EED---KKKAEEAK----KAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

                          250
                   ....*....|....
gi 1958769889  359 QRRSEKAMEEAVKR 372
Cdd:PTZ00121  1744 KKAEEAKKDEEEKK 1757
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 113-372 3.42e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.08  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 113 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 192
Cdd:COG1196   298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 193 IIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKE---------KIQEALTQQSQ 263
Cdd:COG1196   377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEeeeeeealeEAAEEEAELEE 456

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 264 EQKETlgkcLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARD-QERVAEAIQAAVQE 342
Cdd:COG1196   457 EEEAL----LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAgLRGLAGAVAVLIGV 532

                         250       260       270
                  ....*....|....*....|....*....|
gi 1958769889 343 QQRMSQEAVKAAIAEEQRRSEKAMEEAVKR 372
Cdd:COG1196   533 EAAYEAALEAALAAALQNIVVEDDEVAAAA 562
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 113-354 5.43e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 5.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 113 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALS 192
Cdd:COG4942    30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 193 IIVDEYKALLQSSVKQQLDAiekQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELlkEKIQEALTQQSQEQKEtlgkc 272
Cdd:COG4942   109 LLRALYRLGRQPPLALLLSP---EDFLDAVRRLQYLKYLAPARREQAEELRADLAEL--AALRAELEAERAELEA----- 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 273 LQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMwktehardQERVAEAIQAAVQEQQRMSQEAVK 352
Cdd:COG4942   179 LLAELEEERAALEALKA-ERQKLLARLEKELAELAAELAELQQEAEEL--------EALIARLEAEAAAAAERTPAAGFA 249


                  ..
gi 1958769889 353 AA 354
Cdd:COG4942   250 AL 251
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 113-371 1.00e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  113 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKD--FLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEa 190
Cdd:TIGR02168  263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqILRERLANLERQLEELEAQLEELESKLDELAEELAE- 341

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  191 lsiiVDEYKALLQSSVKQQLDAIEKQyvSAIEKQAHRCEELLHAQHQRLlevldtEKELLKEKIQEALTQQSQEQKETLG 270
Cdd:TIGR02168  342 ----LEEKLEELKEELESLEAELEEL--EAELEELESRLEELEEQLETL------RSKVAQLELQIASLNNEIERLEARL 409

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  271 KCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMwKTEHARDQERVAEAIQAAVQEQQRMSQEA 350
Cdd:TIGR02168  410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAERELAQLQ 488

                          250       260
                   ....*....|....*....|.
gi 1958769889  351 VKAAIAEEQRRSEKAMEEAVK 371
Cdd:TIGR02168  489 ARLDSLERLQENLEGFSEGVK 509
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 114-387 1.10e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  114 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLK-----EKEQDAVSFQARYRELQEKHKQELEDMRKAGH 188
Cdd:TIGR02168  695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEERLEEAE 774

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  189 EALSIIVDEyKALLQSSVKQQLDAIE--KQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEaLTQQSQEQK 266
Cdd:TIGR02168  775 EELAEAEAE-IEELEAQIEQLKEELKalREALDELRAELTLLNEEAANLRERL-ESLERRIAATERRLED-LEEQIEELS 851

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  267 ETLGKC--LQEEMQKNKETLESAVKLEKEAmKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVA--EAIQAAVQE 342
Cdd:TIGR02168  852 EDIESLaaEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEElrEKLAQLELR 930

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1958769889  343 QQRMSQEA--VKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRL 387
Cdd:TIGR02168  931 LEGLEVRIdnLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
PTZ00121 PTZ00121
MAEBL; Provisional
 127-372 1.45e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  127 KASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYKallqssv 206
Cdd:PTZ00121  1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK------- 1613

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  207 KQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLES 286
Cdd:PTZ00121  1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  287 AVKLEKEAMK-DVITKAVEEERENLEKVH-AEEREMWKTEHARDQE----RVAEAIQAAVQEQQRMSQEAVKAAIAEEQR 360
Cdd:PTZ00121  1694 LKKEAEEAKKaEELKKKEAEEKKKAEELKkAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773

                          250
                   ....*....|....
gi 1958769889  361 RSEK--AMEEAVKR 372
Cdd:PTZ00121  1774 RKEKeaVIEEELDE 1787
PTZ00121 PTZ00121
MAEBL; Provisional
 123-389 1.80e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEK--QRIKKDVESLMEK-HSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAGHEALSIIVDEYK 199
Cdd:PTZ00121  1312 EEAKKADEAKKkaEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  200 ALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLH-AQHQRLLEVLDTEKEllKEKIQEALTQQSQEQKEtlGKCLQEEMQ 278
Cdd:PTZ00121  1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKkAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKK--AEEAKKKAE 1467

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  279 KNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQEAVKaaiAEE 358
Cdd:PTZ00121  1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK---AEE 1544

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1958769889  359 QRRSEKaMEEAVKRTRDELVEYVREQRRLDQ 389
Cdd:PTZ00121  1545 KKKADE-LKKAEELKKAEEKKKAEEAKKAEE 1574
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 114-352 3.71e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 42.90  E-value: 3.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  114 QLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDFLKEKEQDAV---SFQARYRELQEKHKQELEDMRK--AGH 188
Cdd:pfam12128  298 QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEqlpSWQSELENLEERLKALTGKHQDvtAKY 377

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  189 EALSIIVDEYKALLQSSVKQQLDAIEKqyvsAIEKQAHRCEELLHAQHQRLLEVLDTEKELLKEkiqealtqqsqEQKET 268
Cdd:pfam12128  378 NRRRSKIKEQNNRDIAGIKDKLAKIRE----ARDRQLAVAEDDLQALESELREQLEAGKLEFNE-----------EEYRL 442

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  269 LGKCLQEEMQKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQRMSQ 348
Cdd:pfam12128  443 KSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSAL 522


                   ....
gi 1958769889  349 EAVK 352
Cdd:pfam12128  523 DELE 526
PTZ00121 PTZ00121
MAEBL; Provisional
 123-386 4.55e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 4.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEK-QRIKKDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQE----LEDMRKAGHEALSIIVDE 197
Cdd:PTZ00121  1474 EAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  198 YKALLQSSVKQQLDAIEKQYVSAiEKQAHRCEELLHAQHQRLLEVLDTEKELLKEKIQEAltqqsqeQKETLGKCLQEEM 277
Cdd:PTZ00121  1554 AEELKKAEEKKKAEEAKKAEEDK-NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA-------KKAEEAKIKAEEL 1625

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  278 QKNKETLESAVKLEKEAMKDVITKAVEEERENLEKVHA------EEREMWKTEHAR--DQERVAEAIQAAVQEQQRMSQE 349
Cdd:PTZ00121  1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkAEEDKKKAEEAKkaEEDEKKAAEALKKEAEEAKKAE 1705

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1958769889  350 AVKAAIAEEQRRSE--KAMEEAVKRTRDELVEYVREQRR 386
Cdd:PTZ00121  1706 ELKKKEAEEKKKAEelKKAEEENKIKAEEAKKEAEEDKK 1744
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 113-359 5.59e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 41.74  E-value: 5.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 113 SQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDfLKEKEQDAVSFQARYRELQEKHKQELEDMRKagheals 192
Cdd:COG3883    19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGE------- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 193 IIVDEYKALLQSSVKQQL-------DAIEKqyVSAIEKqahrceelLHAQHQRLLEVLDTEKELLKEKIQEALTQQSQEQ 265
Cdd:COG3883    91 RARALYRSGGSVSYLDVLlgsesfsDFLDR--LSALSK--------IADADADLLEELKADKAELEAKKAELEAKLAELE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 266 KetlgkcLQEEMQKNKETLESAVKlEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEHARDQERVAEAIQAAVQEQQR 345
Cdd:COG3883   161 A------LKAELEAAKAELEAQQA-EQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233

                         250
                  ....*....|....
gi 1958769889 346 MSQEAVKAAIAEEQ 359
Cdd:COG3883   234 AAAAAAAAAAASAA 247
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 111-316 1.03e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.54  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 111 SNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHSVLEKDflkekeqdavsfQARYRELQEKHKQELEDMRKAGHeA 190
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-V 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 191 LSIIVDEYKAlLQSSVKQQLDAIEKQYVSAIEKQAHRCEELlhAQHQRLLEVLDTEKELLKEKIQEaLTQQSQEQKETLG 270
Cdd:TIGR04523 452 KELIIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKEL--KSKEKELKKLNEEKKELEEKVKD-LTKKISSLKEKIE 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1958769889 271 KCLQEEMQKNKETLESAVKLEK---EAMKDVITKAVEEERENLEKVHAE 316
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQT 576
PTZ00121 PTZ00121
MAEBL; Provisional
 107-417 1.18e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  107 GVHVSNSQLRQKISSLEtKLKASEEEKQRIKKdvESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKA 186
Cdd:PTZ00121  1054 GNHEGKAEAKAHVGQDE-GLKPSYKDFDFDAK--EDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA 1130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  187 GHEALSIIVDEYKALLQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLLEVLDTEKELLK----EKIQEALTQQS 262
Cdd:PTZ00121  1131 EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKaedaRKAEAARKAEE 1210

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  263 QEQKETLGKCLQEEMQKNKETLESAVKLEKEAmkdvitKAVEEERENLEKVHAEEREMW---------KTEHARDQERVA 333
Cdd:PTZ00121  1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA------KKAEEERNNEEIRKFEEARMAhfarrqaaiKAEEARKADELK 1284

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  334 EAIQAAVQEQQRMSQEAVKA----AIAEEQRRSEKAMEEA--VKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQ 407
Cdd:PTZ00121  1285 KAEEKKKADEAKKAEEKKKAdeakKKAEEAKKADEAKKKAeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364

                          330
                   ....*....|
gi 1958769889  408 KQLSALIATE 417
Cdd:PTZ00121  1365 KAEAAEKKKE 1374
PTZ00121 PTZ00121
MAEBL; Provisional
 174-393 1.31e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  174 EKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQLDAIEKQyvsaiekQAHRCEELLHAQHQRLLEVLDTEKEL---- 249
Cdd:PTZ00121  1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-------EARKADELKKAEEKKKADEAKKAEEKkkad 1305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  250 -LKEKIQEALTQQSQEQKETLGKCLQEEMQKNKETLE---SAVKLEKEAMKDVITKAVEEERENLEKVHAEEREMWKTEH 325
Cdd:PTZ00121  1306 eAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958769889  326 ARDQERVAEAIQAAVQEQQRMSQEAVKAAiaEEQRRSEKAMEEA-VKRTRDELVEYVREQRRLDQVTRQ 393
Cdd:PTZ00121  1386 KAEEKKKADEAKKKAEEDKKKADELKKAA--AAKKKADEAKKKAeEKKKADEAKKKAEEAKKADEAKKK 1452
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 194-369 1.79e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 40.17  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 194 IVDEYKALlQSSVKQQLDAiEKQYVSAIEKQAHRCEELLHAQHQRLLEVldtEKELLKEkiQEALTQQSQEQKETLGKCL 273
Cdd:PRK09510   60 VVEQYNRQ-QQQQKSAKRA-EEQRKKKEQQQAEELQQKQAAEQERLKQL---EKERLAA--QEQKKQAEEAAKQAALKQK 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889 274 QEEMQKNKETLESAVKLEKEAMK-DVITKAVEEERENLE----KVHAEEREMWKTEHARDQERVAEAIQAAVQE-QQRMS 347
Cdd:PRK09510  133 QAEEAAAKAAAAAKAKAEAEAKRaAAAAKKAAAEAKKKAeaeaAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEaKKKAA 212

                         170       180
                  ....*....|....*....|..
gi 1958769889 348 QEAVKAAIAEEQRRSEKAMEEA 369
Cdd:PRK09510  213 AEAKKKAAAEAKAAAAKAAAEA 234
mukB PRK04863
chromosome partition protein MukB;
69-287 2.00e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 40.71  E-value: 2.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889   69 VQLQQSAHTHLNIPLfplgltdeSNHGALALEDEPEgpgvhVSNSQLRQKISSLETKLKASEEEKQRIKKDVESLMEKHS 148
Cdd:PRK04863   809 VQKLQRLHQAFSRFI--------GSHLAVAFEADPE-----AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  149 VLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRK-AGHEALSIIVDEYKALLQSSvKQQLDAIEKQYVSAIEKQA-- 225
Cdd:PRK04863   876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFvQQHGNALAQLEPIVSVLQSD-PEQFEQLKQDYQQAQQTQRda 954

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958769889  226 -----------HRCEELLHAQHQRLLEVLDTEKELLKEKiQEALTQQSQEQKETLgKCLQEEMQKNKETLESA 287
Cdd:PRK04863   955 kqqafaltevvQRRAHFSYEDAAEMLAKNSDLNEKLRQR-LEQAEQERTRAREQL-RQAQAQLAQYNQVLASL 1025
PTZ00121 PTZ00121
MAEBL; Provisional
 123-409 3.93e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 3.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  123 ETKLKASEEEKQRIK-KDVESLMEKHSVLEKDFLKEKEQDAVSFQARYRELQEKHKQELEDMRKAghEALSIIVDEYKAL 201
Cdd:PTZ00121  1395 EAKKKAEEDKKKADElKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA--EEAKKKAEEAKKA 1472

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  202 LQSSVKQQLDAIEKQYVSAIEKQAHRCEELLHAQHQRLlEVLDTEKELLKEKIQEALTQQSQEQKETLGKClqEEMQKNK 281
Cdd:PTZ00121  1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKAD 1549

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958769889  282 ETLESAVKLEKEAMKDVITKAVEEERENLEKVHAEEREmwKTEHARDQErvaeaIQAAVQEQQRMSQEAVKAAIAEEQRR 361
Cdd:PTZ00121  1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--KAEEARIEE-----VMKLYEEEKKMKAEEAKKAEEAKIKA 1622

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1958769889  362 SEKAMEEAVKRTRDELVEYVREQRRLDQVTRQRSLSSLELFLSCAQKQ 409
Cdd:PTZ00121  1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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