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Conserved domains on  [gi|1964417668|ref|XP_038974626|]
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zinc finger BED domain-containing protein RICESLEEPER 2-like [Phoenix dactylifera]

Protein Classification

zinc finger BED domain-containing protein( domain architecture ID 10652382)

zinc finger BED domain-containing protein is a transposase-like protein, similar to Arabidopsis thaliana zinc finger BED domain-containing protein DAYSLEEPER that is essential for plant growth and development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 556-640 1.58e-33

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


:

Pssm-ID: 399013  Cd Length: 83  Bit Score: 123.14  E-value: 1.58e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 556 ELDSYLDDDVLPDleNKEFDILAWWKSNAAVYPILSRMARDVLAIPVSTVSSESAFSTGGRVVDQYRSSLSPSTVEALVC 635
Cdd:pfam05699   1 ELDQYLSEPVLPR--NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLC 78


                  ....*
gi 1964417668 636 TQDWL 640
Cdd:pfam05699  79 IEDWL 83
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 402-502 1.74e-33

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


:

Pssm-ID: 433913  Cd Length: 100  Bit Score: 123.51  E-value: 1.74e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 402 SGCKYPTSNLYLKEVWGIRALLMDESIDTDETVKQLTNEMLKKFNKYWSQCNNLLVIASILDPRSKLIFVEFCYQKAFEl 481
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYG- 79

                          90       100
                  ....*....|....*....|.
gi 1964417668 482 EECKKKIDDIRACLFKLYNEY 502
Cdd:pfam14372  80 EDAKKYIKKVRDGLRELFNEY 100
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 39-86 1.81e-14

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


:

Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 67.84  E-value: 1.81e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1964417668   39 WVWNHF--IEEKNSEGSIAKCKYCKKVLSGSTKGGTSHLKRHLENVCKRY 86
Cdd:smart00614   1 KVWKHFtlILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHPAR 50
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 556-640 1.58e-33

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 123.14  E-value: 1.58e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 556 ELDSYLDDDVLPDleNKEFDILAWWKSNAAVYPILSRMARDVLAIPVSTVSSESAFSTGGRVVDQYRSSLSPSTVEALVC 635
Cdd:pfam05699   1 ELDQYLSEPVLPR--NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLC 78


                  ....*
gi 1964417668 636 TQDWL 640
Cdd:pfam05699  79 IEDWL 83
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 402-502 1.74e-33

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


Pssm-ID: 433913  Cd Length: 100  Bit Score: 123.51  E-value: 1.74e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 402 SGCKYPTSNLYLKEVWGIRALLMDESIDTDETVKQLTNEMLKKFNKYWSQCNNLLVIASILDPRSKLIFVEFCYQKAFEl 481
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYG- 79

                          90       100
                  ....*....|....*....|.
gi 1964417668 482 EECKKKIDDIRACLFKLYNEY 502
Cdd:pfam14372  80 EDAKKYIKKVRDGLRELFNEY 100
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 39-86 1.81e-14

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 67.84  E-value: 1.81e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1964417668   39 WVWNHF--IEEKNSEGSIAKCKYCKKVLSGSTKGGTSHLKRHLENVCKRY 86
Cdd:smart00614   1 KVWKHFtlILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHPAR 50
zf-BED pfam02892
BED zinc finger;
40-84 2.65e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 44.67  E-value: 2.65e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1964417668  40 VWNHFIEEKNSEGSiAKCKYCKKVLSGstKGGTSHLKRHLENVCK 84
Cdd:pfam02892   3 VWKYFRELPLDETK-AVCRYCGKILSR--GGGTSNLIRHLRRKHP 44
 
Name Accession Description Interval E-value
Dimer_Tnp_hAT pfam05699
hAT family C-terminal dimerization region; This dimerization region is found at the C terminus ...
 556-640 1.58e-33

hAT family C-terminal dimerization region; This dimerization region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerization region forms extremely stable dimers in vitro.


Pssm-ID: 399013  Cd Length: 83  Bit Score: 123.14  E-value: 1.58e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 556 ELDSYLDDDVLPDleNKEFDILAWWKSNAAVYPILSRMARDVLAIPVSTVSSESAFSTGGRVVDQYRSSLSPSTVEALVC 635
Cdd:pfam05699   1 ELDQYLSEPVLPR--NEDFDPLEWWKENSSRYPNLSKLARDILSIPVSSAASERSFSTLGKVILESRNRLEPLNVEALLC 78


                  ....*
gi 1964417668 636 TQDWL 640
Cdd:pfam05699  79 IEDWL 83
DUF4413 pfam14372
Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer ...
 402-502 1.74e-33

Domain of unknown function (DUF4413); This domain is part of an RNase-H fold section of longer proteins some of which are transposable elements possibly of the Pong type, since some members are putative Tam3 transposases.


Pssm-ID: 433913  Cd Length: 100  Bit Score: 123.51  E-value: 1.74e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1964417668 402 SGCKYPTSNLYLKEVWGIRALLMDESIDTDETVKQLTNEMLKKFNKYWSQCNNLLVIASILDPRSKLIFVEFCYQKAFEl 481
Cdd:pfam14372   1 SGSKYPTANLYFHEVWKIQLLLNEWSLSDDPFISSMAKKMQEKFDKYWRECNLVLAIAVVLDPRFKMKLVEFTFNKIYG- 79

                          90       100
                  ....*....|....*....|.
gi 1964417668 482 EECKKKIDDIRACLFKLYNEY 502
Cdd:pfam14372  80 EDAKKYIKKVRDGLRELFNEY 100
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 39-86 1.81e-14

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 67.84  E-value: 1.81e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1964417668   39 WVWNHF--IEEKNSEGSIAKCKYCKKVLSGSTKGGTSHLKRHLENVCKRY 86
Cdd:smart00614   1 KVWKHFtlILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHPAR 50
zf-BED pfam02892
BED zinc finger;
40-84 2.65e-06

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 44.67  E-value: 2.65e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1964417668  40 VWNHFIEEKNSEGSiAKCKYCKKVLSGstKGGTSHLKRHLENVCK 84
Cdd:pfam02892   3 VWKYFRELPLDETK-AVCRYCGKILSR--GGGTSNLIRHLRRKHP 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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