|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
371-642 |
2.68e-98 |
|
This domain is the catalytic domain of ribonuclease II;
:
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 306.50 E-value: 2.68e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCE 450
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 451 ELCSLHPMTDKLTFSVIWTLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 506
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 507 FMLLANMAVAHKTYRAFPErALLRRHPPP-QTKMLNDLMEFCDQMGLPM-DFSSAGALNKSLTKTFGDDKyslarKEVLT 584
Cdd:smart00955 161 FMILANEAVARFLAKNGIP-GLYRVHEGPdPEKLAELLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2092052376 585 NMCSRPMQMALYFCSGTlrdqaqfRHYALNVPLYTHFTSPIRRFADILVHRLLAATLG 642
Cdd:smart00955 235 LLLLRSMPHAEYSVDNS-------GHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
265-341 |
1.33e-33 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
:
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 123.49 E-value: 1.33e-33
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2092052376 265 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIVDWKEDSNFALGHLAKSLGQAGEIEPETEGILTEYG 341
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
688-777 |
4.66e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
:
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.59 E-value: 4.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 688 GPLESEAMVLGVLNQAFDVLVLRYGVQKRVYCNALPLRSHHFQRVGKkpeLTLVWEPEDLEQEPVQQVVTIFSLVEVVLR 767
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 2092052376 768 AETSALKYSA 777
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| Rrp44_CSD1 super family |
cl28867 |
Rrp44-like cold shock domain; |
50-238 |
2.33e-12 |
|
Rrp44-like cold shock domain;
The actual alignment was detected with superfamily member pfam17216:
Pssm-ID: 375054 Cd Length: 148 Bit Score: 65.18 E-value: 2.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEQWKVikPESN 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA--PSSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 130 DKETEGTDeldlpeelcgshlpqqsvkgYNDSPDviIEAQFDDSDSEdghgNAQNVLVdgvqklsvcVHDKRKEdadapv 209
Cdd:pfam17216 82 VLDSEHFD--------------------VNDNPD--IEAGDDDDNNE----SSSNTTV---------ISDKQRR------ 120
|
170 180 190
....*....|....*....|....*....|
gi 2092052376 210 tkdestSMSQDTRVLSE-KSLQRSAKVVYI 238
Cdd:pfam17216 121 ------LLAKDAMIAQRsKKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
371-642 |
2.68e-98 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 306.50 E-value: 2.68e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCE 450
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 451 ELCSLHPMTDKLTFSVIWTLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 506
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 507 FMLLANMAVAHKTYRAFPErALLRRHPPP-QTKMLNDLMEFCDQMGLPM-DFSSAGALNKSLTKTFGDDKyslarKEVLT 584
Cdd:smart00955 161 FMILANEAVARFLAKNGIP-GLYRVHEGPdPEKLAELLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2092052376 585 NMCSRPMQMALYFCSGTlrdqaqfRHYALNVPLYTHFTSPIRRFADILVHRLLAATLG 642
Cdd:smart00955 235 LLLLRSMPHAEYSVDNS-------GHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
263-667 |
6.89e-94 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 308.57 E-value: 6.89e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 263 RKYALFSPSDHRVPR-IYVPLKDCPQdfvtrPKDyaNTLFICRIVDWKEDSNFALGHLAKSLGQAGEIEPETEGILTEYG 341
Cdd:COG0557 145 KGFGFVVPDDKRLLQdIFIPPDDLNG-----AKD--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHG 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 342 VDFsDFSSEVLDCLpQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGS 421
Cdd:COG0557 218 LPH-EFPEEVLAEA-EALPDEVPEADLKGRRDLRDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 422 PLDKVAAQRATSVYLVQKVVPMLPRLLCEELCSLHPMTDKLTFSVIWTLTPEGKLK------------------------ 477
Cdd:COG0557 296 ALDREARKRGTSVYLPDRVIPMLPERLSNGLCSLNPGEDRLAMSCEMEIDAKGEVVsyefyrsvirsdarltyeevqail 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 478 -----------------------LA---------------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANM 513
Cdd:COG0557 376 dgkdeelreeyadlvpmleelyeLAkilrkarekrgaidfdlpetkIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 514 AVAHKTYRAfpERALLRR-HPPPQTKMLNDLMEFCDQMGLPMDFS---SAGALNKsLTKTFGDDKYSlarkEVLTNMCSR 589
Cdd:COG0557 455 AVAEFLEKL--KLPFLYRvHEEPDPEKLEALREFLANLGLKLKGGdepTPKDLQK-LLEQVKGRPEE----ELLNTLLLR 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 590 PMQMALYF--CSGtlrdqaqfrHYALNVPLYTHFTSPIRRFADILVHRLLAATLG---YRELPDLEPDALQKQADHCNDR 664
Cdd:COG0557 528 SMKQAVYSpeNIG---------HFGLALEAYTHFTSPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSET 598
|
....
gi 2092052376 665 -RMA 667
Cdd:COG0557 599 eRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
371-641 |
1.92e-85 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 273.78 E-value: 1.92e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCE 450
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDRVIPMLPEKLSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 451 ELCSLHPMTDKLTFSVIWTLTPEGKLK----------------------------------------------------- 477
Cdd:pfam00773 81 DLCSLNPGEDRLALSVEITIDADGEVTsyeiypsvirskarltyeevddllegkdaekdkpdlaedlrllyelakilrak 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 478 -------------LAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTYrAFPERALLRRHPPPQTKMLNDLM 544
Cdd:pfam00773 161 rlqrgaldldtpeNKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHLQ-ELGIPALYRVHPEPDLEKLNSLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 545 EFCDQMGLPMDFSsagalnKSLTKTFGDdkyslarKEVLTNMCSRPMQMALYFcsgtlrdQAQFRHYALNVPLYTHFTSP 624
Cdd:pfam00773 238 KLLQLLPDDKGLS------KSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFGLGLDIYTHFTSP 297
|
330
....*....|....*..
gi 2092052376 625 IRRFADILVHRLLAATL 641
Cdd:pfam00773 298 IRRYPDLIVHRQLKALL 314
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
231-664 |
4.43e-79 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 268.76 E-value: 4.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 231 RSAKVVYILDKKHSRAATGFLKLladknselfRKYALFSPSDHRVP-RIYVPlKDCPQDFVTrpkdyaNTLFICRIVDWK 309
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIP-PEQILGAEE------GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 310 EDSNFALGHLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLDcLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARD 389
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 390 LDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCEELCSLHPMTDKLTFSVIWT 469
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDRVIPMLPERLSNGICSLNPNEDRLTLSCEME 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 470 LTPEGK------------------------------------------LKLAFTLDH----------------------- 484
Cdd:TIGR02063 345 IDKKGRvkkyefyeavinsharltynqvndiiegkdaldkkepplkemLKNLFELYKilrkkrkkrgaidfdskeakiil 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 485 -ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTYRAfPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDFSSA---- 559
Cdd:TIGR02063 425 dENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLGITLKGGTSdkpq 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 560 -GALNKSLTKTFGDDKYSLARKEVLtnmcsRPMQMALYfcsgtlrDQAQFRHYALNVPLYTHFTSPIRRFADILVHRLL- 637
Cdd:TIGR02063 504 pKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIRRYPDLIVHRLIk 571
|
490 500 510
....*....|....*....|....*....|...
gi 2092052376 638 ------AATLGYRELPDLEPDaLQKQADHCNDR 664
Cdd:TIGR02063 572 kalfggENTTTEKEREYLEAK-LEEIAEHSSKT 603
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
265-341 |
1.33e-33 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 123.49 E-value: 1.33e-33
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2092052376 265 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIVDWKEDSNFALGHLAKSLGQAGEIEPETEGILTEYG 341
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
365-645 |
1.76e-33 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 138.34 E-value: 1.76e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 365 PEEFSKRR-DLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPM 443
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 444 LPRLLCEELCSLHPMTDKLTFSVIWTLTPEGKL--------------KLAFT-----LDHETGL-----PQGCHIYE--- 496
Cdd:PRK11642 333 LPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLtgykfyeavmsshaRLTYTkvwhiLQGDQDLreqyaPLVKHLEElhn 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 497 -YR--------------------------------------DSNKLVEEFMLLANMAVAHKTYRAfPERALLRRHPPPQT 537
Cdd:PRK11642 413 lYKvldkareerggisfeseeakfifnaerrierieqtqrnDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPST 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 538 KMLNDLMEFCDQMGLpmdfsSAGALNKSLTKTFGDDKYSLARK---EVLTNMCSRPMQMALYfcsgtlrDQAQFRHYALN 614
Cdd:PRK11642 492 EAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY-------DPENRGHFGLA 559
|
330 340 350
....*....|....*....|....*....|....*
gi 2092052376 615 VPLYTHFTSPIRRFADILVHR----LLAATLGYRE 645
Cdd:PRK11642 560 LQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKG 594
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
688-777 |
4.66e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.59 E-value: 4.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 688 GPLESEAMVLGVLNQAFDVLVLRYGVQKRVYCNALPLRSHHFQRVGKkpeLTLVWEPEDLEQEPVQQVVTIFSLVEVVLR 767
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 2092052376 768 AETSALKYSA 777
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-238 |
2.33e-12 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 65.18 E-value: 2.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEQWKVikPESN 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA--PSSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 130 DKETEGTDeldlpeelcgshlpqqsvkgYNDSPDviIEAQFDDSDSEdghgNAQNVLVdgvqklsvcVHDKRKEdadapv 209
Cdd:pfam17216 82 VLDSEHFD--------------------VNDNPD--IEAGDDDDNNE----SSSNTTV---------ISDKQRR------ 120
|
170 180 190
....*....|....*....|....*....|
gi 2092052376 210 tkdestSMSQDTRVLSE-KSLQRSAKVVYI 238
Cdd:pfam17216 121 ------LLAKDAMIAQRsKKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
371-642 |
2.68e-98 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 306.50 E-value: 2.68e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCE 450
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRVIPMLPEELSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 451 ELCSLHPMTDKLTFSVIWTLTPEG-------------KLKLAFTLDH-----------ETGLPQGCHIYEYRDSNKLVEE 506
Cdd:smart00955 81 GLCSLNPGEDRLALSVEMTLDADGgeildyefyrsviRSKARLTYEEvdailekivldEEGKIEDIVPRERNDAHSLVEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 507 FMLLANMAVAHKTYRAFPErALLRRHPPP-QTKMLNDLMEFCDQMGLPM-DFSSAGALNKSLTKTFGDDKyslarKEVLT 584
Cdd:smart00955 161 FMILANEAVARFLAKNGIP-GLYRVHEGPdPEKLAELLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2092052376 585 NMCSRPMQMALYFCSGTlrdqaqfRHYALNVPLYTHFTSPIRRFADILVHRLLAATLG 642
Cdd:smart00955 235 LLLLRSMPHAEYSVDNS-------GHFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
263-667 |
6.89e-94 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 308.57 E-value: 6.89e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 263 RKYALFSPSDHRVPR-IYVPLKDCPQdfvtrPKDyaNTLFICRIVDWKEDSNFALGHLAKSLGQAGEIEPETEGILTEYG 341
Cdd:COG0557 145 KGFGFVVPDDKRLLQdIFIPPDDLNG-----AKD--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHG 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 342 VDFsDFSSEVLDCLpQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGS 421
Cdd:COG0557 218 LPH-EFPEEVLAEA-EALPDEVPEADLKGRRDLRDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 422 PLDKVAAQRATSVYLVQKVVPMLPRLLCEELCSLHPMTDKLTFSVIWTLTPEGKLK------------------------ 477
Cdd:COG0557 296 ALDREARKRGTSVYLPDRVIPMLPERLSNGLCSLNPGEDRLAMSCEMEIDAKGEVVsyefyrsvirsdarltyeevqail 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 478 -----------------------LA---------------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANM 513
Cdd:COG0557 376 dgkdeelreeyadlvpmleelyeLAkilrkarekrgaidfdlpetkIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 514 AVAHKTYRAfpERALLRR-HPPPQTKMLNDLMEFCDQMGLPMDFS---SAGALNKsLTKTFGDDKYSlarkEVLTNMCSR 589
Cdd:COG0557 455 AVAEFLEKL--KLPFLYRvHEEPDPEKLEALREFLANLGLKLKGGdepTPKDLQK-LLEQVKGRPEE----ELLNTLLLR 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 590 PMQMALYF--CSGtlrdqaqfrHYALNVPLYTHFTSPIRRFADILVHRLLAATLG---YRELPDLEPDALQKQADHCNDR 664
Cdd:COG0557 528 SMKQAVYSpeNIG---------HFGLALEAYTHFTSPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSET 598
|
....
gi 2092052376 665 -RMA 667
Cdd:COG0557 599 eRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
371-641 |
1.92e-85 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 273.78 E-value: 1.92e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCE 450
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDRVIPMLPEKLSN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 451 ELCSLHPMTDKLTFSVIWTLTPEGKLK----------------------------------------------------- 477
Cdd:pfam00773 81 DLCSLNPGEDRLALSVEITIDADGEVTsyeiypsvirskarltyeevddllegkdaekdkpdlaedlrllyelakilrak 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 478 -------------LAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTYrAFPERALLRRHPPPQTKMLNDLM 544
Cdd:pfam00773 161 rlqrgaldldtpeNKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHLQ-ELGIPALYRVHPEPDLEKLNSLI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 545 EFCDQMGLPMDFSsagalnKSLTKTFGDdkyslarKEVLTNMCSRPMQMALYFcsgtlrdQAQFRHYALNVPLYTHFTSP 624
Cdd:pfam00773 238 KLLQLLPDDKGLS------KSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFGLGLDIYTHFTSP 297
|
330
....*....|....*..
gi 2092052376 625 IRRFADILVHRLLAATL 641
Cdd:pfam00773 298 IRRYPDLIVHRQLKALL 314
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
231-664 |
4.43e-79 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 268.76 E-value: 4.43e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 231 RSAKVVYILDKKHSRAATGFLKLladknselfRKYALFSPSDHRVP-RIYVPlKDCPQDFVTrpkdyaNTLFICRIVDWK 309
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIP-PEQILGAEE------GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 310 EDSNFALGHLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLDcLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARD 389
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 390 LDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCEELCSLHPMTDKLTFSVIWT 469
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDRVIPMLPERLSNGICSLNPNEDRLTLSCEME 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 470 LTPEGK------------------------------------------LKLAFTLDH----------------------- 484
Cdd:TIGR02063 345 IDKKGRvkkyefyeavinsharltynqvndiiegkdaldkkepplkemLKNLFELYKilrkkrkkrgaidfdskeakiil 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 485 -ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTYRAfPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDFSSA---- 559
Cdd:TIGR02063 425 dENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLGITLKGGTSdkpq 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 560 -GALNKSLTKTFGDDKYSLARKEVLtnmcsRPMQMALYfcsgtlrDQAQFRHYALNVPLYTHFTSPIRRFADILVHRLL- 637
Cdd:TIGR02063 504 pKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIRRYPDLIVHRLIk 571
|
490 500 510
....*....|....*....|....*....|...
gi 2092052376 638 ------AATLGYRELPDLEPDaLQKQADHCNDR 664
Cdd:TIGR02063 572 kalfggENTTTEKEREYLEAK-LEEIAEHSSKT 603
|
|
| 3_prime_RNase |
TIGR00358 |
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of ... |
231-665 |
6.02e-53 |
|
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. [Transcription, Degradation of RNA]
Pssm-ID: 273033 [Multi-domain] Cd Length: 654 Bit Score: 194.93 E-value: 6.02e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 231 RSAKVVYILDKKHSRAATGFLklladknselFRKYALFSPSDHrvPRIYVPLKdCPQDFVtrPKDYA-NTLFICRIVDWK 309
Cdd:TIGR00358 70 FEAEVERILEPALTRFVGKFL----------GENDFGFVVPDD--PRIYLDII-VPKASV--KNELAeGDKVVVELTEYP 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 310 EDSNFALGHLAKSLGQAGEIEPETEGILTEYGVDF---SDFSSEVLDclpqgLPWTIPPEEFSKRRDLRKDCIFTIDPST 386
Cdd:TIGR00358 135 LRRNLFYGEITQILGNNDDPLIPWWVTLARHEIPFefpDGVEQQAAK-----LQFDVDEQAKKYREDLTDLAFVTIDGAD 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 387 ARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPMLPRLLCEELCSLHPMTDKLTFSV 466
Cdd:TIGR00358 210 AKDLDDAVYVKKLPDGGWKLYVAIADVSYYVAENSPLDKEAKHRGFSVYLPGFVIPMLPEELSNGLCSLNPNEDRLVLVC 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 467 IWTLTPEGKL--------------KLAFT--------------------------------------------LDH---- 484
Cdd:TIGR00358 290 EMTISAQGRItdnefypatieskaRLTYDkvndwlenddelqpeyetlveqlkalhqlsqalgewrhkrglidFEHpetk 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 485 ----ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAhKTYRAFPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDFSSAG 560
Cdd:TIGR00358 370 fivdEEGRVIDIVAEVRRIAEKIIEEAMIVANICAA-RFLHNHKVPGIYRVHPGPSKKKLQSLLEFLAELGLTLPGGNAE 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 561 ALNKSltktfgdDKYSLARK-------EVLTNMCSRPMQMALYfcsgtlrDQAQFRHYALNVPLYTHFTSPIRRFADILV 633
Cdd:TIGR00358 449 NVTTL-------DGACWLREvkdrpeyEILVTRLLRSLSQAEY-------SPEPLGHFGLGLEHYAHFTSPIRRYPDLTN 514
|
490 500 510
....*....|....*....|....*....|....*.
gi 2092052376 634 HRLLAATLgYRELPDLEPDALQ----KQADHCNDRR 665
Cdd:TIGR00358 515 HRLIKAVL-AKEQTDTERYQPQdellQIAEHCSDTE 549
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
265-341 |
1.33e-33 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 123.49 E-value: 1.33e-33
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2092052376 265 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIVDWKEDSNFALGHLAKSLGQAGEIEPETEGILTEYG 341
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
365-645 |
1.76e-33 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 138.34 E-value: 1.76e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 365 PEEFSKRR-DLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSVYLVQKVVPM 443
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 444 LPRLLCEELCSLHPMTDKLTFSVIWTLTPEGKL--------------KLAFT-----LDHETGL-----PQGCHIYE--- 496
Cdd:PRK11642 333 LPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLtgykfyeavmsshaRLTYTkvwhiLQGDQDLreqyaPLVKHLEElhn 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 497 -YR--------------------------------------DSNKLVEEFMLLANMAVAHKTYRAfPERALLRRHPPPQT 537
Cdd:PRK11642 413 lYKvldkareerggisfeseeakfifnaerrierieqtqrnDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPST 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 538 KMLNDLMEFCDQMGLpmdfsSAGALNKSLTKTFGDDKYSLARK---EVLTNMCSRPMQMALYfcsgtlrDQAQFRHYALN 614
Cdd:PRK11642 492 EAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY-------DPENRGHFGLA 559
|
330 340 350
....*....|....*....|....*....|....*
gi 2092052376 615 VPLYTHFTSPIRRFADILVHR----LLAATLGYRE 645
Cdd:PRK11642 560 LQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKG 594
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
688-777 |
4.66e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.59 E-value: 4.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 688 GPLESEAMVLGVLNQAFDVLVLRYGVQKRVYCNALPLRSHHFQRVGKkpeLTLVWEPEDLEQEPVQQVVTIFSLVEVVLR 767
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 2092052376 768 AETSALKYSA 777
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| Rnb |
COG4776 |
Exoribonuclease II [Transcription]; |
356-667 |
7.72e-28 |
|
Exoribonuclease II [Transcription];
Pssm-ID: 443808 [Multi-domain] Cd Length: 644 Bit Score: 119.57 E-value: 7.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 356 PQGL-PWTIPPEEfSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSV 434
Cdd:COG4776 175 PEGDdEWELLDEG-LEREDLTALPFVTIDSESTEDMDDALYIEKLENGGWKLTVAIADPTAYIPEGSELDKEARQRAFTN 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 435 YLVQKVVPMLPRLLCEELCSLHP------------------MTDKLTFSVIWTltpEGKLKLA----------------- 479
Cdd:COG4776 254 YLPGFNIPMLPRELSDDLCSLKEnekrpalvcrvtidadgsIGDDIEFFAAWI---RSKAKLAydnvsdwlegkgewqpe 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 480 ------------------------------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHK----- 518
Cdd:COG4776 331 neeiaeqirllhqfalarsqwrqqhalvfkdrpdyrFELD-EKGNVLDIHAEPRRIANRIVEEAMIAANICAARVlrehl 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 519 ------TYRAF-PER-----ALLRRHPPPQTK-MLNDLMEFCdqmglpmdfssagALNKSLTKTfgDDKYSLARkevltn 585
Cdd:COG4776 410 gfgifnVHSGFdPEKleqavELLAEHGIEFDPeQLLTLEGFC-------------ALRRELDAQ--PTSYLDSR------ 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 586 mcsrpmqmalyfcsgtLRDQAQF--------RHYALNVPLYTHFTSPIRRFADILVHRLLAATLGYRELPDLEPDALQKQ 657
Cdd:COG4776 469 ----------------LRRFQTFaeistepgPHFGLGLDAYATWTSPIRKYGDMVNHRLIKAVILGQPAEKPDEELTERL 532
|
410
....*....|
gi 2092052376 658 ADHCNDRRMA 667
Cdd:COG4776 533 AERRRLNRMA 542
|
|
| PRK05054 |
PRK05054 |
exoribonuclease II; Provisional |
356-671 |
2.09e-26 |
|
exoribonuclease II; Provisional
Pssm-ID: 179920 [Multi-domain] Cd Length: 644 Bit Score: 114.97 E-value: 2.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 356 PQGL-PWTIPPEEfSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAQRATSV 434
Cdd:PRK05054 175 PAGGvAWEMLDEG-LEREDLTALDFVTIDSASTEDMDDALYVEKLPDGGLQLTVAIADPTAYIAEGSKLDKAARQRAFTN 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 435 YLVQKVVPMLPRLLCEELCSLHP------------------MTDKLTFSVIWTltpEGKLKLA----------------- 479
Cdd:PRK05054 254 YLPGFNIPMLPRELSDDLCSLRPnerrpalacrvtidadgtIEDDIRFFAAWI---ESKAKLAydnvsdwlenggdwqpe 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 480 ------------------------------------FTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAH------ 517
Cdd:PRK05054 331 seaiaeqirllhqfclarsewrkqhalvfkdrpdyrFELG-EKGEVLDIVAEPRRIANRIVEESMIAANICAARvlrdkl 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 518 -----KTYRAF-PERA-----LLRRHPPPQT-KMLNDLMEFCdQMGLPMDFSSAGALNKSLTK--TFGDDKYSLArkevl 583
Cdd:PRK05054 410 gfgiyNVHSGFdPANAeqavaLLKEHGLHFDaEELLTLEGFC-KLRRELDAQPTGYLDSRIRRfqSFAEISTEPG----- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 584 tnmcsrPmqmalyfcsgtlrdqaqfrHYALNVPLYTHFTSPIRRFADILVHRLLAATLGYRELPDLEPDALQKQADHCND 663
Cdd:PRK05054 484 ------P-------------------HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAERPQDEITVQLAERRRL 538
|
....*...
gi 2092052376 664 RRMASKRV 671
Cdd:PRK05054 539 NRMAERDV 546
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-238 |
2.33e-12 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 65.18 E-value: 2.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEQWKVikPESN 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA--PSSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2092052376 130 DKETEGTDeldlpeelcgshlpqqsvkgYNDSPDviIEAQFDDSDSEdghgNAQNVLVdgvqklsvcVHDKRKEdadapv 209
Cdd:pfam17216 82 VLDSEHFD--------------------VNDNPD--IEAGDDDDNNE----SSSNTTV---------ISDKQRR------ 120
|
170 180 190
....*....|....*....|....*....|
gi 2092052376 210 tkdestSMSQDTRVLSE-KSLQRSAKVVYI 238
Cdd:pfam17216 121 ------LLAKDAMIAQRsKKIQPTAKVVYI 144
|
|
| |
